Query 021418
Match_columns 312
No_of_seqs 156 out of 2147
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00579 FBD domain in FBox 99.5 1.9E-13 4.1E-18 92.5 6.8 69 239-307 2-72 (72)
2 PF08387 FBD: FBD; InterPro: 99.2 1.1E-11 2.4E-16 77.2 4.5 48 231-278 1-50 (51)
3 PLN00113 leucine-rich repeat r 99.0 3.2E-10 7E-15 114.3 7.2 122 4-127 140-270 (968)
4 PLN00113 leucine-rich repeat r 99.0 7.4E-10 1.6E-14 111.7 6.3 121 4-128 118-247 (968)
5 cd00116 LRR_RI Leucine-rich re 98.7 1.4E-08 3E-13 89.3 4.3 237 27-281 21-289 (319)
6 KOG2120 SCF ubiquitin ligase, 98.6 1.5E-09 3.2E-14 90.6 -3.2 172 27-216 208-394 (419)
7 PLN03210 Resistant to P. syrin 98.5 1.4E-07 3E-12 96.4 7.2 105 20-127 603-714 (1153)
8 cd00116 LRR_RI Leucine-rich re 98.4 4.3E-08 9.3E-13 86.1 -0.0 262 5-280 24-317 (319)
9 KOG4194 Membrane glycoprotein 98.4 1.8E-08 3.9E-13 91.3 -2.8 81 3-86 172-255 (873)
10 KOG4194 Membrane glycoprotein 98.4 1.1E-07 2.3E-12 86.4 1.1 135 19-165 162-306 (873)
11 PLN03210 Resistant to P. syrin 98.4 5.7E-07 1.2E-11 92.0 6.2 100 4-106 611-713 (1153)
12 PF14580 LRR_9: Leucine-rich r 98.2 2.4E-07 5.2E-12 73.4 0.1 108 27-160 40-148 (175)
13 KOG4341 F-box protein containi 98.2 1.8E-07 4E-12 81.6 -0.7 264 6-281 140-437 (483)
14 KOG0444 Cytoskeletal regulator 98.2 1.2E-08 2.7E-13 93.2 -8.3 177 19-220 93-302 (1255)
15 KOG3207 Beta-tubulin folding c 98.1 2.3E-07 5.1E-12 81.4 -1.6 99 28-126 171-280 (505)
16 KOG1909 Ran GTPase-activating 98.1 3.4E-06 7.4E-11 72.2 4.4 188 25-220 54-281 (382)
17 KOG0617 Ras suppressor protein 98.0 1.2E-07 2.6E-12 73.3 -5.4 156 24-220 28-184 (264)
18 KOG2982 Uncharacterized conser 97.9 7E-06 1.5E-10 69.0 3.0 220 4-267 71-307 (418)
19 KOG1909 Ran GTPase-activating 97.9 1.6E-06 3.4E-11 74.2 -1.8 189 25-221 88-310 (382)
20 PF13855 LRR_8: Leucine rich r 97.7 1.3E-05 2.9E-10 51.9 1.3 56 30-86 2-59 (61)
21 KOG0444 Cytoskeletal regulator 97.7 1.5E-07 3.3E-12 86.2 -10.7 78 5-85 127-206 (1255)
22 KOG3207 Beta-tubulin folding c 97.7 4.8E-06 1E-10 73.3 -1.7 101 27-127 119-232 (505)
23 KOG2120 SCF ubiquitin ligase, 97.7 5.9E-06 1.3E-10 69.5 -1.1 126 3-128 233-374 (419)
24 KOG0617 Ras suppressor protein 97.7 1.2E-06 2.7E-11 67.7 -4.7 69 17-87 44-113 (264)
25 PRK15370 E3 ubiquitin-protein 97.7 4.2E-05 9.2E-10 74.3 4.5 112 5-127 179-293 (754)
26 PF14580 LRR_9: Leucine-rich r 97.6 1.1E-05 2.5E-10 63.9 -0.2 132 26-189 16-148 (175)
27 PRK15387 E3 ubiquitin-protein 97.5 6.5E-05 1.4E-09 72.9 3.7 56 152-221 402-457 (788)
28 PF13855 LRR_8: Leucine rich r 97.5 0.00013 2.9E-09 47.2 3.9 57 5-63 2-61 (61)
29 KOG3665 ZYG-1-like serine/thre 97.5 5.7E-05 1.2E-09 72.7 2.6 150 29-217 122-283 (699)
30 PRK15370 E3 ubiquitin-protein 97.5 4E-05 8.7E-10 74.4 1.1 72 5-86 221-293 (754)
31 PRK15387 E3 ubiquitin-protein 97.4 0.0003 6.4E-09 68.4 6.8 78 19-106 214-291 (788)
32 KOG0618 Serine/threonine phosp 97.3 4.6E-06 1E-10 79.7 -7.6 168 29-219 241-440 (1081)
33 PF07723 LRR_2: Leucine Rich R 97.3 0.00032 6.9E-09 36.6 2.6 25 52-76 1-26 (26)
34 PLN03150 hypothetical protein; 97.1 0.00034 7.3E-09 67.2 3.1 56 31-87 420-477 (623)
35 KOG0472 Leucine-rich repeat pr 97.1 0.00012 2.6E-09 64.2 -0.3 65 10-77 256-321 (565)
36 PF12799 LRR_4: Leucine Rich r 97.0 0.00034 7.3E-09 41.9 1.6 36 29-64 1-37 (44)
37 KOG3665 ZYG-1-like serine/thre 97.0 0.00032 6.9E-09 67.7 2.1 200 50-278 59-283 (699)
38 KOG2982 Uncharacterized conser 96.9 0.00071 1.5E-08 57.3 3.3 103 24-126 40-155 (418)
39 KOG1259 Nischarin, modulator o 96.9 0.00014 3E-09 61.5 -1.0 180 20-221 205-411 (490)
40 KOG4237 Extracellular matrix p 96.6 0.0011 2.5E-08 58.1 2.1 48 18-65 79-130 (498)
41 KOG1644 U2-associated snRNP A' 96.3 0.0098 2.1E-07 47.7 5.3 95 30-125 43-148 (233)
42 KOG0472 Leucine-rich repeat pr 96.2 0.00032 7E-09 61.6 -3.3 67 18-86 400-468 (565)
43 PF12799 LRR_4: Leucine Rich r 96.2 0.0039 8.5E-08 37.2 2.1 36 51-88 1-36 (44)
44 KOG0618 Serine/threonine phosp 96.2 0.0016 3.5E-08 63.0 0.6 35 181-220 241-275 (1081)
45 PLN03150 hypothetical protein; 96.1 0.0048 1E-07 59.4 3.4 82 6-89 420-503 (623)
46 KOG1947 Leucine rich repeat pr 95.7 0.0027 5.8E-08 58.9 0.1 91 115-219 241-331 (482)
47 KOG1859 Leucine-rich repeat pr 95.7 0.00063 1.4E-08 64.2 -4.1 100 51-163 187-290 (1096)
48 KOG1259 Nischarin, modulator o 95.6 0.00041 8.8E-09 58.8 -5.1 35 50-86 283-317 (490)
49 KOG1644 U2-associated snRNP A' 95.6 0.019 4E-07 46.2 4.3 57 29-86 64-123 (233)
50 KOG4341 F-box protein containi 95.6 0.0075 1.6E-07 53.5 2.2 78 28-105 293-380 (483)
51 KOG2739 Leucine-rich acidic nu 95.0 0.0063 1.4E-07 50.6 0.0 84 5-88 19-103 (260)
52 COG4886 Leucine-rich repeat (L 95.0 0.013 2.8E-07 53.1 1.9 99 27-127 114-219 (394)
53 COG5238 RNA1 Ran GTPase-activa 94.9 0.038 8.2E-07 46.6 4.3 165 47-220 88-283 (388)
54 KOG2123 Uncharacterized conser 94.5 0.0042 9.1E-08 52.3 -2.4 62 27-88 39-100 (388)
55 PRK15386 type III secretion pr 94.4 0.079 1.7E-06 47.8 5.4 89 27-125 50-140 (426)
56 KOG1947 Leucine rich repeat pr 94.4 0.017 3.8E-07 53.5 1.3 82 25-106 210-304 (482)
57 COG4886 Leucine-rich repeat (L 94.1 0.012 2.7E-07 53.3 -0.4 153 17-191 127-287 (394)
58 COG5238 RNA1 Ran GTPase-activa 93.8 0.097 2.1E-06 44.2 4.3 184 28-221 29-254 (388)
59 KOG3864 Uncharacterized conser 92.5 0.022 4.7E-07 45.8 -1.2 72 19-90 91-165 (221)
60 KOG4658 Apoptotic ATPase [Sign 91.3 0.32 7E-06 48.7 5.1 64 29-92 523-587 (889)
61 PF13516 LRR_6: Leucine Rich r 90.0 0.26 5.6E-06 24.8 1.7 21 50-70 1-21 (24)
62 KOG4237 Extracellular matrix p 89.7 0.063 1.4E-06 47.6 -1.2 79 6-87 46-126 (498)
63 KOG4579 Leucine-rich repeat (L 89.4 0.04 8.6E-07 41.7 -2.3 77 25-104 49-127 (177)
64 KOG2739 Leucine-rich acidic nu 88.9 0.24 5.1E-06 41.5 1.6 60 28-88 64-128 (260)
65 PRK15386 type III secretion pr 88.8 1.1 2.3E-05 40.8 5.8 88 4-106 52-141 (426)
66 PF00560 LRR_1: Leucine Rich R 88.4 0.32 6.9E-06 24.0 1.3 14 30-43 1-14 (22)
67 KOG4579 Leucine-rich repeat (L 88.4 0.015 3.3E-07 43.8 -5.0 75 31-106 29-109 (177)
68 KOG3864 Uncharacterized conser 87.4 0.15 3.3E-06 41.1 -0.4 64 25-89 121-189 (221)
69 KOG2123 Uncharacterized conser 86.7 0.04 8.6E-07 46.6 -4.1 77 4-83 41-124 (388)
70 smart00367 LRR_CC Leucine-rich 86.4 0.66 1.4E-05 23.9 1.9 22 50-71 1-23 (26)
71 KOG4658 Apoptotic ATPase [Sign 85.9 0.23 4.9E-06 49.8 -0.1 86 19-106 560-651 (889)
72 PF08387 FBD: FBD; InterPro: 85.3 1.8 4E-05 26.5 3.8 38 180-217 13-50 (51)
73 KOG0531 Protein phosphatase 1, 85.1 0.36 7.7E-06 44.2 0.8 60 25-87 91-151 (414)
74 PF13504 LRR_7: Leucine rich r 83.5 0.78 1.7E-05 21.0 1.2 12 52-63 2-13 (17)
75 KOG0532 Leucine-rich repeat (L 79.9 0.32 6.9E-06 45.4 -1.6 64 20-86 135-199 (722)
76 KOG0532 Leucine-rich repeat (L 76.2 0.46 1E-05 44.3 -1.6 75 18-96 155-230 (722)
77 smart00579 FBD domain in FBox 74.9 6.7 0.00015 25.8 4.2 41 180-220 4-44 (72)
78 KOG0531 Protein phosphatase 1, 74.2 1.5 3.3E-05 40.1 1.1 100 27-128 70-173 (414)
79 smart00368 LRR_RI Leucine rich 73.5 3.6 7.7E-05 21.6 2.0 20 51-70 2-21 (28)
80 KOG1859 Leucine-rich repeat pr 69.8 0.52 1.1E-05 45.4 -2.9 38 25-63 205-244 (1096)
81 PF13306 LRR_5: Leucine rich r 64.8 6.6 0.00014 28.8 2.7 62 21-84 3-66 (129)
82 smart00369 LRR_TYP Leucine-ric 58.1 6.8 0.00015 19.8 1.2 15 50-64 1-15 (26)
83 smart00370 LRR Leucine-rich re 58.1 6.8 0.00015 19.8 1.2 15 50-64 1-15 (26)
84 smart00365 LRR_SD22 Leucine-ri 41.0 18 0.00039 18.6 1.2 15 50-64 1-15 (26)
85 PF07735 FBA_2: F-box associat 31.8 72 0.0016 20.5 3.3 32 52-83 33-69 (70)
No 1
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.46 E-value=1.9e-13 Score=92.52 Aligned_cols=69 Identities=33% Similarity=0.602 Sum_probs=61.6
Q ss_pred ccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEecCC--CCChHHHHHHHhcccccCCccEEEEe
Q 021418 239 SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS--LEGGWDLIKELLRFRRASARAEIIYL 307 (312)
Q Consensus 239 ~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~--~~~~~~~~~~l~~~~r~S~~~~v~~~ 307 (312)
|+.++|+.|+|.+|.|..+|+++++|+++||+.||+|+|.... .+...++.++|..++|||++|+|.|.
T Consensus 2 cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 2 CLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred cchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence 7788999999999999999999999999999999999999765 23445678889999999999999873
No 2
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.24 E-value=1.1e-11 Score=77.16 Aligned_cols=48 Identities=46% Similarity=0.785 Sum_probs=43.5
Q ss_pred cccccc--ccccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEe
Q 021418 231 FWEVDH--WTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK 278 (312)
Q Consensus 231 ~w~~~~--~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~ 278 (312)
+|.++. |+|..+||+.|++.||.|.++|++|++|+++||+.||+|+|.
T Consensus 1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 363333 889999999999999999999999999999999999999996
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.04 E-value=3.2e-10 Score=114.25 Aligned_cols=122 Identities=14% Similarity=0.056 Sum_probs=76.0
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021418 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
.+++.|+++.+... ..+|..+..+++|+.|+|++|.+.. |..+..+++|++|++++|.+.+. ++..+..+++|+.|
T Consensus 140 ~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L 217 (968)
T PLN00113 140 PNLETLDLSNNMLS-GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWI 217 (968)
T ss_pred CCCCEEECcCCccc-ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEE
Confidence 35666776543321 3567777788888888888887642 55677788888888888876543 34456777888888
Q ss_pred eeeccCCceeEE---EeCCCcceEEEeecc----cceeeecCCcceEEEEeEE
Q 021418 82 TLMNFDGFTHLN---IDAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLY 127 (312)
Q Consensus 82 ~l~~~~~~~~~~---i~~p~L~~L~~~~~~----~~~~~~~~~~L~~l~l~~~ 127 (312)
++.+|.....+. -..++|++|.+.++. .+..+.++++|+.++++.+
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 887764322111 134567777766531 1123456667777776544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.96 E-value=7.4e-10 Score=111.70 Aligned_cols=121 Identities=21% Similarity=0.192 Sum_probs=73.2
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021418 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
++++.|+++.+... -.+|. ...++|++|+|++|.+.. |..++.+++|+.|+|++|.+.+. ++..+..++.|++|
T Consensus 118 ~~L~~L~Ls~n~l~-~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L 193 (968)
T PLN00113 118 SSLRYLNLSNNNFT-GSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFL 193 (968)
T ss_pred CCCCEEECcCCccc-cccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCee
Confidence 35566666433211 13443 346778888888887643 45567788888888888876543 34456778888888
Q ss_pred eeeccCCceeEE---EeCCCcceEEEeec-cc---ceeeecCCcceEEEEeEEE
Q 021418 82 TLMNFDGFTHLN---IDAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLYV 128 (312)
Q Consensus 82 ~l~~~~~~~~~~---i~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l~~~~ 128 (312)
++.+|.....+. -..++|+.|.+.++ +. +-.+.++++|+.++++.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 887775332211 12356777777653 11 1234567788888776554
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.69 E-value=1.4e-08 Score=89.27 Aligned_cols=237 Identities=14% Similarity=0.027 Sum_probs=138.0
Q ss_pred cCCcceEEEeeceeeCC------CCCCCCCcccceeeecceeeC--hH---HHHHHHhCCcccceeeeeccCCce-----
Q 021418 27 LCQNLIHLELFNCLLKP------PSTFKGFRNLKSLDLQHITLS--QD---VFENLISSSPTLERLTLMNFDGFT----- 90 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~--~~---~l~~ll~~cp~Le~L~l~~~~~~~----- 90 (312)
..+.|+.|.+++|.+.. +..+..+++|++|.++++.+. .. .+...+..++.|+.|++.+|....
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 34558888888887643 122446677888888887765 22 234456667888888888765321
Q ss_pred --eEEEeCCCcceEEEeec-cc-----ce--eeecC-CcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEE
Q 021418 91 --HLNIDAPNLQFFDIGGV-FD-----DV--TFENT-FHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI 159 (312)
Q Consensus 91 --~~~i~~p~L~~L~~~~~-~~-----~~--~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l 159 (312)
.+.-. ++|++|.+.++ +. .+ .+... ++|++++++.+.... .....+...+..++++++|++
T Consensus 101 ~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-------~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 101 LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG-------ASCEALAKALRANRDLKELNL 172 (319)
T ss_pred HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc-------hHHHHHHHHHHhCCCcCEEEC
Confidence 11112 56888888763 21 11 13345 889999987654221 011223455667788999999
Q ss_pred eeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccc-ccc
Q 021418 160 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVD-HWT 238 (312)
Q Consensus 160 ~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~-~~~ 238 (312)
..+.+..-.....+..++ .+++|++|.+..+.-.......+...+..+|+|+.|++..+.... +... ...
T Consensus 173 ~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--------~~~~~l~~ 243 (319)
T cd00116 173 ANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--------AGAAALAS 243 (319)
T ss_pred cCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--------HHHHHHHH
Confidence 877553100000111111 246899999965533334444567777889999999998764221 0000 001
Q ss_pred -c--cccCceEEEEEeEecc-hhHHHHHHHHHccCcccceeEEecCC
Q 021418 239 -S--LFSQLRMVKIVGISGI-RSELEFIKFVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 239 -~--~~~~L~~v~i~~~~~~-~~~~~~~~~ll~~~~~Le~~~i~~~~ 281 (312)
+ ....|+.+.+.+..-. .+...++++ +.+.+.|+.+.+..+.
T Consensus 244 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 244 ALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNK 289 (319)
T ss_pred HHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCC
Confidence 1 1368888888764332 233444554 4455889999888776
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.5e-09 Score=90.62 Aligned_cols=172 Identities=20% Similarity=0.215 Sum_probs=118.4
Q ss_pred cCCcceEEEeeceeeCCC--CCCCCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCCceeE-----EEeCCC
Q 021418 27 LCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTHL-----NIDAPN 98 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~-----~i~~p~ 98 (312)
.|+.|+.|.|-+.+++++ ..++.-.+|+.|+|+.+. ++..+++-++++|..|.+|.+++|...... .--+++
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 578888899988888874 234566889999999986 888889999999999999999999754321 114589
Q ss_pred cceEEEeecccc-----e--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccC
Q 021418 99 LQFFDIGGVFDD-----V--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGN 171 (312)
Q Consensus 99 L~~L~~~~~~~~-----~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~ 171 (312)
|..|.++|.... + -...+|+|.+++++.+....+ .....+..++.|++|.++.++. ..+. .
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~----------~~~~~~~kf~~L~~lSlsRCY~-i~p~-~ 355 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN----------DCFQEFFKFNYLQHLSLSRCYD-IIPE-T 355 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc----------hHHHHHHhcchheeeehhhhcC-CChH-H
Confidence 999999984221 1 135799999999987654322 1123455789999999986642 0111 0
Q ss_pred CCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEE
Q 021418 172 VPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEM 216 (312)
Q Consensus 172 ~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l 216 (312)
. ..+ ...++|.+|++.++..+. .+.-+.+.||+|+.-.-
T Consensus 356 ~-~~l-~s~psl~yLdv~g~vsdt----~mel~~e~~~~lkin~q 394 (419)
T KOG2120|consen 356 L-LEL-NSKPSLVYLDVFGCVSDT----TMELLKEMLSHLKINCQ 394 (419)
T ss_pred e-eee-ccCcceEEEEeccccCch----HHHHHHHhCccccccce
Confidence 1 111 246788898886664432 35667788998765433
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.54 E-value=1.4e-07 Score=96.41 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=53.3
Q ss_pred ecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE---e
Q 021418 20 KVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI---D 95 (312)
Q Consensus 20 ~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i---~ 95 (312)
.+|..+ ..++|+.|++.++.+.. +.....+++|+.|+|+++..-. .++. ++.+++|++|++.+|..+..+.. .
T Consensus 603 ~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 603 CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhc
Confidence 555543 45667777777766543 3344566677777776553111 1121 45566666666666654432221 2
Q ss_pred CCCcceEEEeec--ccceee-ecCCcceEEEEeEE
Q 021418 96 APNLQFFDIGGV--FDDVTF-ENTFHLALVSIGLY 127 (312)
Q Consensus 96 ~p~L~~L~~~~~--~~~~~~-~~~~~L~~l~l~~~ 127 (312)
.++|+.|.+.++ +..+.. .++++|+.+.++.|
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence 345556655542 111111 14555555555443
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.42 E-value=4.3e-08 Score=86.14 Aligned_cols=262 Identities=18% Similarity=0.073 Sum_probs=153.1
Q ss_pred CceEEEEEecCC---cceecCCCcccCCcceEEEeeceeeCC-C-------CCCCCCcccceeeecceeeChH---HHHH
Q 021418 5 CVKEFILEIWKG---QRYKVPSSLFLCQNLIHLELFNCLLKP-P-------STFKGFRNLKSLDLQHITLSQD---VFEN 70 (312)
Q Consensus 5 ~v~eL~l~~~~~---~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-------~~~~~l~~L~~L~L~~~~~~~~---~l~~ 70 (312)
++++|+++.... ....++..+...++|+.|+++++.+.. + ..+..+++|+.|+++++.+.+. .+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 366777754332 223566666677889999998886652 1 2345678999999999987632 3444
Q ss_pred HHhCCcccceeeeeccCCce--------eEEEeCCCcceEEEeecc-c-----ce--eeecCCcceEEEEeEEEeecCCc
Q 021418 71 LISSSPTLERLTLMNFDGFT--------HLNIDAPNLQFFDIGGVF-D-----DV--TFENTFHLALVSIGLYVNVKNDQ 134 (312)
Q Consensus 71 ll~~cp~Le~L~l~~~~~~~--------~~~i~~p~L~~L~~~~~~-~-----~~--~~~~~~~L~~l~l~~~~~~~~~~ 134 (312)
+... |.|++|++.+|.... .+.-..++|+.|.+.++. . .+ .+..+++|+.++++.+....
T Consensus 104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--- 179 (319)
T cd00116 104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD--- 179 (319)
T ss_pred Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch---
Confidence 4444 679999999875321 111112789999988742 2 11 23456789999887543210
Q ss_pred cCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhh-hcCCCcce
Q 021418 135 AMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLL-RSSPNLQE 213 (312)
Q Consensus 135 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L-~~~p~Le~ 213 (312)
.....+...+...++++.|+++.+.+...........++ .+++|++|.++.+......+..+...+ ...+.|+.
T Consensus 180 ----~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 180 ----AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA-SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred ----HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc-ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 011222233445679999999887653111111111222 477899999965432222222232222 23589999
Q ss_pred EEEEeccCCCCCcccccccccccccccccCceEEEEEe-EecchhHHHHHHHHHccCcccceeEEecC
Q 021418 214 LEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG-ISGIRSELEFIKFVLSNSPVLETMTIKPA 280 (312)
Q Consensus 214 L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~-~~~~~~~~~~~~~ll~~~~~Le~~~i~~~ 280 (312)
|.+..+.....+... -.+..+. ..+|+.+.+.+ --+.+....+++.+..+++.|+.+.|..+
T Consensus 255 L~l~~n~i~~~~~~~---l~~~~~~--~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 255 LSLSCNDITDDGAKD---LAEVLAE--KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred EEccCCCCCcHHHHH---HHHHHhc--CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 999887532110000 0001011 26788888774 22345567888888888899999888654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.41 E-value=1.8e-08 Score=91.30 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=49.2
Q ss_pred CCCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccc
Q 021418 3 RSCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE 79 (312)
Q Consensus 3 ~~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 79 (312)
+.++++|+|...... .+-- .+-+..+|.+|+|+.|++.. +..|..+|.|+.|+|..|++.-... .-+.+.|+|+
T Consensus 172 ~~ni~~L~La~N~It--~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~-ltFqgL~Sl~ 248 (873)
T KOG4194|consen 172 KVNIKKLNLASNRIT--TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG-LTFQGLPSLQ 248 (873)
T ss_pred CCCceEEeecccccc--ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh-hhhcCchhhh
Confidence 457788888655432 2222 13345588888888887754 3446678888888888877642111 1234566666
Q ss_pred eeeeecc
Q 021418 80 RLTLMNF 86 (312)
Q Consensus 80 ~L~l~~~ 86 (312)
.|.|..+
T Consensus 249 nlklqrN 255 (873)
T KOG4194|consen 249 NLKLQRN 255 (873)
T ss_pred hhhhhhc
Confidence 6666554
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.37 E-value=1.1e-07 Score=86.40 Aligned_cols=135 Identities=17% Similarity=0.228 Sum_probs=81.8
Q ss_pred eecCCCcccC-CcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC--ceeEE
Q 021418 19 YKVPSSLFLC-QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG--FTHLN 93 (312)
Q Consensus 19 ~~lp~~l~~~-~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~--~~~~~ 93 (312)
.++|..-+.- .+++.|+|++|++.. ...|.+|.+|.+|.|+.|+++.- -...+.+.|.|+.|+|..+.. +..+.
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhccccceeeehhhh
Confidence 4555444433 689999999998875 34578888999999999998642 234567799999999987632 11111
Q ss_pred E-eCCCcceEEEeec----ccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehh
Q 021418 94 I-DAPNLQFFDIGGV----FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLK 165 (312)
Q Consensus 94 i-~~p~L~~L~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 165 (312)
+ ..|+|+.+.+..+ +.+-.+-.+.+++.+++..+.-..-. ...+-+++.|+.|+++.+.++
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-----------~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-----------EGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-----------cccccccchhhhhccchhhhh
Confidence 1 2366777766542 22333445677777777654321100 122334555666666655543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.36 E-value=5.7e-07 Score=92.05 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=59.1
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeecee-eCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021418 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCL-LKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 82 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 82 (312)
.++++|++..+. .-.+|..+..+++|+.|+|+++. +...+.+..+++|++|+|.+|..- ..++..+..++.|+.|+
T Consensus 611 ~~L~~L~L~~s~--l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSK--LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcc--ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEe
Confidence 456666664433 23566666677778888887763 444445667777888877776422 22444556677777777
Q ss_pred eeccCCceeEEE--eCCCcceEEEee
Q 021418 83 LMNFDGFTHLNI--DAPNLQFFDIGG 106 (312)
Q Consensus 83 l~~~~~~~~~~i--~~p~L~~L~~~~ 106 (312)
+.+|..+..+.. ..++|+.|.+.|
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsg 713 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSG 713 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCC
Confidence 777654433221 334555555554
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=2.4e-07 Score=73.42 Aligned_cols=108 Identities=23% Similarity=0.270 Sum_probs=41.7
Q ss_pred cCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEee
Q 021418 27 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGG 106 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~ 106 (312)
.+++|+.|+|++|.+.....+..++.|++|++++|.++.-. ..+...||+|++|.+.++....
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~---------------- 102 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISD---------------- 102 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---S----------------
T ss_pred hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCC----------------
Confidence 35677777777777776666777777777777777765310 1223457777777776553211
Q ss_pred cccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021418 107 VFDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 107 ~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
+..+ .+..+|+|+.+++..++-... ..+- ...+..+|+|+.|+-.
T Consensus 103 -l~~l~~L~~l~~L~~L~L~~NPv~~~-------~~YR-~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 103 -LNELEPLSSLPKLRVLSLEGNPVCEK-------KNYR-LFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -CCCCGGGGG-TT--EEE-TT-GGGGS-------TTHH-HHHHHH-TT-SEETTE
T ss_pred -hHHhHHHHcCCCcceeeccCCcccch-------hhHH-HHHHHHcChhheeCCE
Confidence 1111 245678888888865543321 1111 2345678888888764
No 13
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.22 E-value=1.8e-07 Score=81.57 Aligned_cols=264 Identities=17% Similarity=0.201 Sum_probs=148.8
Q ss_pred ceEEEEEecCCcce-ecCCCcccCCcceEEEeecee-eCCC---CCCCCCcccceeeeccee-eChHHHHHHHhCCcccc
Q 021418 6 VKEFILEIWKGQRY-KVPSSLFLCQNLIHLELFNCL-LKPP---STFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLE 79 (312)
Q Consensus 6 v~eL~l~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~-l~~~---~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le 79 (312)
.|+|.++......+ .+=.....|+++.+|.+.+|. +.+. +-...|++|+.|.+..|. +++..+..+..+||+|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 45566554432211 111223468888888888885 3331 112468889999998854 77777888888999999
Q ss_pred eeeeeccCCcee-----EEEeCCCcceEEEeeccc----cee-e-ecCCcceEEEEeEEEeecCC------------ccC
Q 021418 80 RLTLMNFDGFTH-----LNIDAPNLQFFDIGGVFD----DVT-F-ENTFHLALVSIGLYVNVKND------------QAM 136 (312)
Q Consensus 80 ~L~l~~~~~~~~-----~~i~~p~L~~L~~~~~~~----~~~-~-~~~~~L~~l~l~~~~~~~~~------------~~~ 136 (312)
+|.+++|+.+.. +.-....++.+...|+.. .+. + ..++-+.++++..+....+. +..
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 999999875532 111222344443344210 000 0 12333333333222111100 000
Q ss_pred -----CCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCc
Q 021418 137 -----GPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNL 211 (312)
Q Consensus 137 -----~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~L 211 (312)
..+....+..+..+.++|+.|.+..+.- . .......+....+.|+.|.+..++.... . .+..+-.+||.|
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~--f-sd~~ft~l~rn~~~Le~l~~e~~~~~~d-~-tL~sls~~C~~l 374 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ--F-SDRGFTMLGRNCPHLERLDLEECGLITD-G-TLASLSRNCPRL 374 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccch--h-hhhhhhhhhcCChhhhhhcccccceehh-h-hHhhhccCCchh
Confidence 0122344566677788999999876531 1 1111123445677888888865554322 2 477888999999
Q ss_pred ceEEEEeccCCCCCcccccccccccccccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEecCC
Q 021418 212 QELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 212 e~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~ 281 (312)
+.|.++-+....+.+. . .-....|...+|..+++.+......+ .++ .+.+++.||++.++...
T Consensus 375 r~lslshce~itD~gi--~--~l~~~~c~~~~l~~lEL~n~p~i~d~--~Le-~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGI--R--HLSSSSCSLEGLEVLELDNCPLITDA--TLE-HLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhh--h--hhhhccccccccceeeecCCCCchHH--HHH-HHhhCcccceeeeechh
Confidence 9999985433211000 0 00003477889999999987765432 333 34688999998888764
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.22 E-value=1.2e-08 Score=93.17 Aligned_cols=177 Identities=17% Similarity=0.204 Sum_probs=85.9
Q ss_pred eecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcc--------------------
Q 021418 19 YKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT-------------------- 77 (312)
Q Consensus 19 ~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~-------------------- 77 (312)
.-+|..+|.+..|..|+|+.|++.. |..+..-.++-.|+|+++.|..- ...++.+..-
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI-Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI-PNSLFINLTDLLFLDLSNNRLEMLPPQIRR 171 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC-CchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence 3566666666666666666666543 33344444555555655554221 1122233333
Q ss_pred ---cceeeeeccCCceeEEE-eCC---CcceEEEeec---cc--ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHH
Q 021418 78 ---LERLTLMNFDGFTHLNI-DAP---NLQFFDIGGV---FD--DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLL 145 (312)
Q Consensus 78 ---Le~L~l~~~~~~~~~~i-~~p---~L~~L~~~~~---~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 145 (312)
|++|.++++.-.. +.+ ..| +|..|.+++. .. +.++.++.+|..++++.+. .+.+.
T Consensus 172 L~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------------Lp~vP 238 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNH-FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------------LPIVP 238 (1255)
T ss_pred HhhhhhhhcCCChhhH-HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC------------CCcch
Confidence 4444444442110 000 112 3444444442 11 1234455566666554321 12223
Q ss_pred HHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021418 146 RFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 146 ~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
..+-++++|+.|.++++.+.-+..+. ..+.+|+.|.++.+ .+..++.-+...|.|++|.+..+.
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~~~------~~W~~lEtLNlSrN-----QLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNMTE------GEWENLETLNLSRN-----QLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeeccH------HHHhhhhhhccccc-----hhccchHHHhhhHHHHHHHhccCc
Confidence 44556677777777776553332221 12556666666433 122466666777778777776654
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.3e-07 Score=81.37 Aligned_cols=99 Identities=20% Similarity=0.098 Sum_probs=66.1
Q ss_pred CCcceEEEeeceeeCCCCC---CCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE---eCCCcce
Q 021418 28 CQNLIHLELFNCLLKPPST---FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI---DAPNLQF 101 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~~~~~---~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i---~~p~L~~ 101 (312)
.++|+.|+|+.|++..+.+ -..++.||+|.|+.|.++..++..++..||.|+.|.+.++.+...-.. ....|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 5788888888887754322 135788999999999998888889999999999999988853221111 1235666
Q ss_pred EEEeec-c---cce-eeecCCcceEEEEeE
Q 021418 102 FDIGGV-F---DDV-TFENTFHLALVSIGL 126 (312)
Q Consensus 102 L~~~~~-~---~~~-~~~~~~~L~~l~l~~ 126 (312)
|+++++ + +.+ .++.+|.|..+.+..
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccc
Confidence 766663 1 111 244566666666543
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.10 E-value=3.4e-06 Score=72.21 Aligned_cols=188 Identities=23% Similarity=0.268 Sum_probs=108.3
Q ss_pred cccCCcceEEEeecee---eCC--CC-------CCCCCcccceeeecceeeCh---HHHHHHHhCCcccceeeeeccCCc
Q 021418 25 LFLCQNLIHLELFNCL---LKP--PS-------TFKGFRNLKSLDLQHITLSQ---DVFENLISSSPTLERLTLMNFDGF 89 (312)
Q Consensus 25 l~~~~~L~~L~L~~~~---l~~--~~-------~~~~l~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~l~~~~~~ 89 (312)
+.+-+.|+..+++..- ... |+ .+.++|.|++|+|++|.|.. ..+..++++|..|+.|-|.+|...
T Consensus 54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 3344667777766541 111 21 24567899999999999864 367788999999999999998632
Q ss_pred e----------------eEEEeCCCcceEEEeec-ccc-------eeeecCCcceEEEEeEEEeecCCccCCCCcchhHH
Q 021418 90 T----------------HLNIDAPNLQFFDIGGV-FDD-------VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLL 145 (312)
Q Consensus 90 ~----------------~~~i~~p~L~~L~~~~~-~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 145 (312)
. ...-..|.|+.|....+ +.+ -.+...|.|+.+.+..+..... ....+.
T Consensus 134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-------G~~al~ 206 (382)
T KOG1909|consen 134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-------GVTALA 206 (382)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCc-------hhHHHH
Confidence 1 11224567777776642 111 1234457777777654332111 111222
Q ss_pred HHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHH-hhhcCCCcceEEEEecc
Q 021418 146 RFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALC-LLRSSPNLQELEMLARP 220 (312)
Q Consensus 146 ~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~-~L~~~p~Le~L~l~~~~ 220 (312)
.-+..+++|+.|++..+++...........+| .|++|+.|.++.+.....+..++.. +-+..|+|+.|.+.++.
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~-s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALS-SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhc-ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 33456778888888777654221111122344 3677777777555433333333433 44567888888776654
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.01 E-value=1.2e-07 Score=73.26 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=102.4
Q ss_pred CcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceE
Q 021418 24 SLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFF 102 (312)
Q Consensus 24 ~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L 102 (312)
.++++..++.|.|+++.+.. |+.++.+.+|+.|++..+.+ +.++.-++..|.|+.|.+..+.-..
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~~------------ 93 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLNI------------ 93 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhhc------------
Confidence 47888999999999998765 77888999999999999988 4477778889999999886443210
Q ss_pred EEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCC
Q 021418 103 DIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD 182 (312)
Q Consensus 103 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~ 182 (312)
.+-.++..|.|+.+++.++.-.++..+ | +|+ .+..++.|.++.+.++++ |..+. .+.+
T Consensus 94 ------lprgfgs~p~levldltynnl~e~~lp---g------nff-~m~tlralyl~dndfe~l-----p~dvg-~lt~ 151 (264)
T KOG0617|consen 94 ------LPRGFGSFPALEVLDLTYNNLNENSLP---G------NFF-YMTTLRALYLGDNDFEIL-----PPDVG-KLTN 151 (264)
T ss_pred ------CccccCCCchhhhhhccccccccccCC---c------chh-HHHHHHHHHhcCCCcccC-----Chhhh-hhcc
Confidence 011245678888888876553332211 1 222 245566677776655432 22121 2444
Q ss_pred cceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021418 183 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 183 L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
|+.|.+. ..++..++..++....|+.|.|.++.
T Consensus 152 lqil~lr-----dndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 152 LQILSLR-----DNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred eeEEeec-----cCchhhCcHHHHHHHHHHHHhcccce
Confidence 4444442 13344678888888889999998764
No 18
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=7e-06 Score=69.04 Aligned_cols=220 Identities=17% Similarity=0.123 Sum_probs=124.3
Q ss_pred CCceEEEEEecCC-cceecCCCcccCCcceEEEeeceeeCCC-CCC-CCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021418 4 SCVKEFILEIWKG-QRYKVPSSLFLCQNLIHLELFNCLLKPP-STF-KGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~~l~~~-~~~-~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.+|+|+++..+.. .+.++-+-+-.++.|++|+|+.|.+.++ ... ....+|++|.|.+..+.......++...|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 4677777754431 2233433344678899999999888652 222 355689999998888877778888889999999
Q ss_pred eeeeccCC------ceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCc
Q 021418 81 LTLMNFDG------FTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI 154 (312)
Q Consensus 81 L~l~~~~~------~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 154 (312)
|+++.+.- -.++.--+|.++++...+ +++... ....++-.-+|++
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~-----------c~~~~w------------------~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLP-----------CLEQLW------------------LNKNKLSRIFPNV 201 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCC-----------cHHHHH------------------HHHHhHHhhcccc
Confidence 98876621 011111112222222221 111110 0112334456888
Q ss_pred cEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCC-Ccccccccc
Q 021418 155 RRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETG-IGVLTNFWE 233 (312)
Q Consensus 155 ~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~-~~~~~~~w~ 233 (312)
..+.++.++++.......... |+.+--|.+... +...|.++ .-|..+|.|..|.+..++...+ .+..
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~----~p~~~~LnL~~~--~idswasv-D~Ln~f~~l~dlRv~~~Pl~d~l~~~e----- 269 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEP----FPSLSCLNLGAN--NIDSWASV-DALNGFPQLVDLRVSENPLSDPLRGGE----- 269 (418)
T ss_pred hheeeecCcccchhhcccCCC----CCcchhhhhccc--ccccHHHH-HHHcCCchhheeeccCCcccccccCCc-----
Confidence 888888887765555443332 444445555322 33344333 4568999999999987764310 0000
Q ss_pred cccccc-cccCceEEEEEe---E---ecchhHHHHHHHHHc
Q 021418 234 VDHWTS-LFSQLRMVKIVG---I---SGIRSELEFIKFVLS 267 (312)
Q Consensus 234 ~~~~~~-~~~~L~~v~i~~---~---~~~~~~~~~~~~ll~ 267 (312)
+.. +.-.|..|++.| . .....|..|++|.++
T Consensus 270 ---rr~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 270 ---RRFLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred ---ceEEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 111 124555555553 1 123477899999886
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.86 E-value=1.6e-06 Score=74.20 Aligned_cols=189 Identities=18% Similarity=0.219 Sum_probs=116.0
Q ss_pred cccCCcceEEEeeceeeCC--CCC----CCCCcccceeeecceeeCh---HH---------HHHHHhCCcccceeeeecc
Q 021418 25 LFLCQNLIHLELFNCLLKP--PST----FKGFRNLKSLDLQHITLSQ---DV---------FENLISSSPTLERLTLMNF 86 (312)
Q Consensus 25 l~~~~~L~~L~L~~~~l~~--~~~----~~~l~~L~~L~L~~~~~~~---~~---------l~~ll~~cp~Le~L~l~~~ 86 (312)
+..|+.|+.|+|+.|.+.+ ++. +.++.+|+.|.|.+|.+.. .. .......-|.|+.+....+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 3467889999999987764 333 2567889999998887653 22 2233456778888887766
Q ss_pred CCce--------eEEEeCCCcceEEEeec-c--cc-----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhc
Q 021418 87 DGFT--------HLNIDAPNLQFFDIGGV-F--DD-----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVH 150 (312)
Q Consensus 87 ~~~~--------~~~i~~p~L~~L~~~~~-~--~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (312)
.... .++ ..|+|+.+++..+ + .. ..+..+|.|+.+++..+.... -.+..+...+..
T Consensus 168 rlen~ga~~~A~~~~-~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-------egs~~LakaL~s 239 (382)
T KOG1909|consen 168 RLENGGATALAEAFQ-SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-------EGSVALAKALSS 239 (382)
T ss_pred ccccccHHHHHHHHH-hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-------HHHHHHHHHhcc
Confidence 4221 111 2378888887652 1 11 135679999999997654321 123344566777
Q ss_pred CCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021418 151 LPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 151 l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
+++|+.|.++.+.++.--...+...+-..+++|+.|.+..+.........+..-...-|.|++|.+..+..
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88888888887655310000001122234778888888655433343334444455689999999988764
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.72 E-value=1.3e-05 Score=51.94 Aligned_cols=56 Identities=36% Similarity=0.450 Sum_probs=28.6
Q ss_pred cceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021418 30 NLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 86 (312)
Q Consensus 30 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~ 86 (312)
+|+.|++++|.+.. +..|.++++|++|+++++.++.- -+..+.++|+|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 45556666554443 23445566666666665554321 1123455566666665554
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.72 E-value=1.5e-07 Score=86.20 Aligned_cols=78 Identities=26% Similarity=0.315 Sum_probs=49.3
Q ss_pred CceEEEEEecCCcceecCCCcc-cCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021418 5 CVKEFILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 82 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 82 (312)
|.=.|.++.+. +-.+|.+++ +.+.|-.|+|++|++.. |+....+..|++|.|+++.+..-.+..+ -+..+|+.|.
T Consensus 127 n~iVLNLS~N~--IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLh 203 (1255)
T KOG0444|consen 127 NSIVLNLSYNN--IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLH 203 (1255)
T ss_pred CcEEEEcccCc--cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhh
Confidence 33344444333 347787765 56788888888888765 6677778888888888876543333332 3345566666
Q ss_pred eec
Q 021418 83 LMN 85 (312)
Q Consensus 83 l~~ 85 (312)
+++
T Consensus 204 ms~ 206 (1255)
T KOG0444|consen 204 MSN 206 (1255)
T ss_pred ccc
Confidence 654
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=4.8e-06 Score=73.33 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=68.2
Q ss_pred cCCcceEEEeeceeeCCCC---CCCCCcccceeeecceeeC-hHHHHHHHhCCcccceeeeeccCCc----eeEEEeCCC
Q 021418 27 LCQNLIHLELFNCLLKPPS---TFKGFRNLKSLDLQHITLS-QDVFENLISSSPTLERLTLMNFDGF----THLNIDAPN 98 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~~~---~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~l~~~~~~----~~~~i~~p~ 98 (312)
+...|+...|.++.+..+. ....||++++|+|+.+-+. ...+..+....|+||.|.++.+... ....-..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3467888888888776543 3567888888888888764 4567788888888888888876421 122235577
Q ss_pred cceEEEeec-cc--c--eeeecCCcceEEEEeEE
Q 021418 99 LQFFDIGGV-FD--D--VTFENTFHLALVSIGLY 127 (312)
Q Consensus 99 L~~L~~~~~-~~--~--~~~~~~~~L~~l~l~~~ 127 (312)
|+.|.++++ +. + ..+..+|+|+.+++..+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 888888763 21 1 12345788888777654
No 23
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=5.9e-06 Score=69.51 Aligned_cols=126 Identities=19% Similarity=0.222 Sum_probs=86.2
Q ss_pred CCCceEEEEEecCCc-ceecCCCcccCCcceEEEeeceeeCCC--CCC--CCCcccceeeeccee--eChHHHHHHHhCC
Q 021418 3 RSCVKEFILEIWKGQ-RYKVPSSLFLCQNLIHLELFNCLLKPP--STF--KGFRNLKSLDLQHIT--LSQDVFENLISSS 75 (312)
Q Consensus 3 ~~~v~eL~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~l~~~--~~~--~~l~~L~~L~L~~~~--~~~~~l~~ll~~c 75 (312)
.+++++|+|+++.+- ...+---+.+|++|..|+|+.|.+..+ ..+ .--++|+.|+|++++ +....+..+...|
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 467889999876531 122222245899999999999965432 111 124789999999986 4556788889999
Q ss_pred cccceeeeeccCCcee----EEEeCCCcceEEEeeccc--c---eeeecCCcceEEEEeEEE
Q 021418 76 PTLERLTLMNFDGFTH----LNIDAPNLQFFDIGGVFD--D---VTFENTFHLALVSIGLYV 128 (312)
Q Consensus 76 p~Le~L~l~~~~~~~~----~~i~~p~L~~L~~~~~~~--~---~~~~~~~~L~~l~l~~~~ 128 (312)
|+|.+|++++|..+.. .-+..+.|+++.++.++. + +.+...|+|.++++.++-
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9999999999876532 112446777777776432 1 235678888888876543
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.68 E-value=1.2e-06 Score=67.74 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=58.6
Q ss_pred cceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021418 17 QRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 17 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
....+|+.+....+|+.|++.++++.. |..++.+|.|+.|+++-+++ ..+++-++++|.||.|++.++.
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhccccc
Confidence 346789999999999999999999876 77889999999999988875 3356668899999999999874
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.67 E-value=4.2e-05 Score=74.25 Aligned_cols=112 Identities=20% Similarity=0.128 Sum_probs=62.0
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021418 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
+..+|.++.. ....+|..+. ++|+.|+|++|.+.. |..+ +++|++|++++|.++. ++.-+ .+.|+.|++
T Consensus 179 ~~~~L~L~~~--~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKIL--GLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCC--CcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hccccEEEC
Confidence 4455555432 2345666542 468888888887765 3322 3588888888887753 22222 246888888
Q ss_pred eccCCceeEEE-eCCCcceEEEeec-ccceeeecCCcceEEEEeEE
Q 021418 84 MNFDGFTHLNI-DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLY 127 (312)
Q Consensus 84 ~~~~~~~~~~i-~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~ 127 (312)
++|... .+.. -..+|+.|.++++ +..+.-.-.++|+.++++.+
T Consensus 249 s~N~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N 293 (754)
T PRK15370 249 SINRIT-ELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDN 293 (754)
T ss_pred cCCccC-cCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCC
Confidence 777432 1211 1136777777653 22221111246777777644
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.62 E-value=1.1e-05 Score=63.93 Aligned_cols=132 Identities=17% Similarity=0.078 Sum_probs=43.0
Q ss_pred ccCCcceEEEeeceeeCCCCCCC-CCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEE
Q 021418 26 FLCQNLIHLELFNCLLKPPSTFK-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI 104 (312)
Q Consensus 26 ~~~~~L~~L~L~~~~l~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~ 104 (312)
-++..++.|+|.++.+.....++ .+..|+.|++++|.++. +. -+..++.|++|++.++.-..
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~~-------------- 78 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRISS-------------- 78 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S--------------
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCCc--------------
Confidence 45667899999999988777776 58899999999998864 22 24567888888887664321
Q ss_pred eecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcc
Q 021418 105 GGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN 184 (312)
Q Consensus 105 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~ 184 (312)
........+|+|+.++++.+.-.+ ... ...+..+++|+.|++.++++..... ....+-..+|+|+
T Consensus 79 ---i~~~l~~~lp~L~~L~L~~N~I~~---------l~~-l~~L~~l~~L~~L~L~~NPv~~~~~--YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 79 ---ISEGLDKNLPNLQELYLSNNKISD---------LNE-LEPLSSLPKLRVLSLEGNPVCEKKN--YRLFVIYKLPSLK 143 (175)
T ss_dssp ----CHHHHHH-TT--EEE-TTS---S---------CCC-CGGGGG-TT--EEE-TT-GGGGSTT--HHHHHHHH-TT-S
T ss_pred ---cccchHHhCCcCCEEECcCCcCCC---------hHH-hHHHHcCCCcceeeccCCcccchhh--HHHHHHHHcChhh
Confidence 101011247888888886443211 111 1446789999999999987642111 1111112467888
Q ss_pred eEEEE
Q 021418 185 YLSIR 189 (312)
Q Consensus 185 ~L~l~ 189 (312)
.|+-.
T Consensus 144 ~LD~~ 148 (175)
T PF14580_consen 144 VLDGQ 148 (175)
T ss_dssp EETTE
T ss_pred eeCCE
Confidence 77753
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.54 E-value=6.5e-05 Score=72.86 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=30.5
Q ss_pred CCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021418 152 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
++++.|+++.+.+. .+|..+.+|+.|.+..+. . ..++.-+..+++|+.|++..++.
T Consensus 402 s~L~~LdLS~N~Ls---------sIP~l~~~L~~L~Ls~Nq--L---t~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 402 SELKELMVSGNRLT---------SLPMLPSGLLSLSVYRNQ--L---TRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cCCCEEEccCCcCC---------CCCcchhhhhhhhhccCc--c---cccChHHhhccCCCeEECCCCCC
Confidence 45666666655432 122223355555553221 1 13555567788888888887754
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.52 E-value=0.00013 Score=47.16 Aligned_cols=57 Identities=28% Similarity=0.328 Sum_probs=45.1
Q ss_pred CceEEEEEecCCcceecCCCc-ccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceee
Q 021418 5 CVKEFILEIWKGQRYKVPSSL-FLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITL 63 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~ 63 (312)
++++|+++.+ ....+|... ..+++|++|++++|.+.. +..|.++++|+.|++++|.+
T Consensus 2 ~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNN--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSS--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCC--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5777887544 345888755 468999999999998764 45689999999999999864
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=5.7e-05 Score=72.72 Aligned_cols=150 Identities=24% Similarity=0.255 Sum_probs=89.8
Q ss_pred CcceEEEeeceeeCC---CCCC-CCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEE
Q 021418 29 QNLIHLELFNCLLKP---PSTF-KGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI 104 (312)
Q Consensus 29 ~~L~~L~L~~~~l~~---~~~~-~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~ 104 (312)
++|++|+++|...-. +... ..||+|++|.+.+..+..+++..+..++|+|+.|+++++....
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-------------- 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-------------- 187 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--------------
Confidence 678888888864322 1122 3589999999988888777788888888888888887664211
Q ss_pred eecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeeh--------hhhcccCCCCCC
Q 021418 105 GGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL--------KYLAIGNVPSRL 176 (312)
Q Consensus 105 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~--------~~l~~~~~~~~l 176 (312)
+ ..++.+.+|+.+.+..-... ....+.. +.++.+|+.|+++.... +|+. .
T Consensus 188 ---l--~GIS~LknLq~L~mrnLe~e---------~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYle-------c 245 (699)
T KOG3665|consen 188 ---L--SGISRLKNLQVLSMRNLEFE---------SYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLE-------C 245 (699)
T ss_pred ---c--HHHhccccHHHHhccCCCCC---------chhhHHH-HhcccCCCeeeccccccccchHHHHHHHH-------h
Confidence 0 01334555666555322111 1122333 33577777777764311 1111 1
Q ss_pred CcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEE
Q 021418 177 PRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML 217 (312)
Q Consensus 177 ~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~ 217 (312)
+..+|+||.|+.+....+. ..+..++..-|+|+....-
T Consensus 246 ~~~LpeLrfLDcSgTdi~~---~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDINE---EILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cccCccccEEecCCcchhH---HHHHHHHHhCccHhhhhhh
Confidence 1236688888876442221 2467788888988887654
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.46 E-value=4e-05 Score=74.42 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=35.9
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021418 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
++++|++..+. ...+|..+. .+|+.|+|++|.+.. |..+ ..+|+.|++++|.++. ++.-+ ++.|+.|++
T Consensus 221 nL~~L~Ls~N~--LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~--LP~~l--~~sL~~L~L 290 (754)
T PRK15370 221 NIKTLYANSNQ--LTSIPATLP--DTIQEMELSINRITELPERL--PSALQSLDLFHNKISC--LPENL--PEELRYLSV 290 (754)
T ss_pred CCCEEECCCCc--cccCChhhh--ccccEEECcCCccCcCChhH--hCCCCEEECcCCccCc--ccccc--CCCCcEEEC
Confidence 45666654332 234555432 356667777666544 2222 2356666666665542 22211 245666666
Q ss_pred ecc
Q 021418 84 MNF 86 (312)
Q Consensus 84 ~~~ 86 (312)
++|
T Consensus 291 s~N 293 (754)
T PRK15370 291 YDN 293 (754)
T ss_pred CCC
Confidence 655
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.44 E-value=0.0003 Score=68.41 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=43.3
Q ss_pred eecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCC
Q 021418 19 YKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPN 98 (312)
Q Consensus 19 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~ 98 (312)
..+|..+. ++|+.|.+.+|.+...+. ..++|++|++++|.++. ++. ..+.|+.|++.+|.. ..+.-..++
T Consensus 214 tsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N~L-~~Lp~lp~~ 283 (788)
T PRK15387 214 TTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPL-THLPALPSG 283 (788)
T ss_pred CcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeeccCCch-hhhhhchhh
Confidence 46777654 367777887777665332 35677888887776652 222 235666666665532 112112234
Q ss_pred cceEEEee
Q 021418 99 LQFFDIGG 106 (312)
Q Consensus 99 L~~L~~~~ 106 (312)
|+.|.+.+
T Consensus 284 L~~L~Ls~ 291 (788)
T PRK15387 284 LCKLWIFG 291 (788)
T ss_pred cCEEECcC
Confidence 55555544
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.25 E-value=4.6e-06 Score=79.72 Aligned_cols=168 Identities=18% Similarity=0.124 Sum_probs=89.3
Q ss_pred CcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce--eEEEeCCCcceEEEe
Q 021418 29 QNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT--HLNIDAPNLQFFDIG 105 (312)
Q Consensus 29 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~--~~~i~~p~L~~L~~~ 105 (312)
.+|+.++++++.+.. |.+...+++|+.+....++++ .++.-++....|+.|.+.+|+... ...-.-.+|++|.+.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 578888888887765 555577888888888888773 244445555666666666653210 000001233444433
Q ss_pred ec-c---cc-------------------------eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccE
Q 021418 106 GV-F---DD-------------------------VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRR 156 (312)
Q Consensus 106 ~~-~---~~-------------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 156 (312)
.+ + .+ ..=...+.|+.+++..+.. .....+.+.+..+|+.
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L-----------td~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL-----------TDSCFPVLVNFKHLKV 387 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc-----------cccchhhhccccceee
Confidence 21 0 00 0001122333333322211 1112466778889999
Q ss_pred EEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021418 157 LEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR 219 (312)
Q Consensus 157 L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~ 219 (312)
|++..+.+. .+|...-.++..|++|.++.+.- ..++.-+.+|+.|++|..+.+
T Consensus 388 LhLsyNrL~-----~fpas~~~kle~LeeL~LSGNkL-----~~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 388 LHLSYNRLN-----SFPASKLRKLEELEELNLSGNKL-----TTLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred eeecccccc-----cCCHHHHhchHHhHHHhcccchh-----hhhhHHHHhhhhhHHHhhcCC
Confidence 999887653 23332223566777777765422 235555566666776665554
No 33
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.25 E-value=0.00032 Score=36.65 Aligned_cols=25 Identities=36% Similarity=0.688 Sum_probs=22.5
Q ss_pred ccceeeecceeeChH-HHHHHHhCCc
Q 021418 52 NLKSLDLQHITLSQD-VFENLISSSP 76 (312)
Q Consensus 52 ~L~~L~L~~~~~~~~-~l~~ll~~cp 76 (312)
+||+|+|.++.+.++ .+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999765 7999999998
No 34
>PLN03150 hypothetical protein; Provisional
Probab=97.10 E-value=0.00034 Score=67.23 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=28.0
Q ss_pred ceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021418 31 LIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 31 L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
++.|+|+++.+.. |..+..+++|+.|+|++|.+.+. ++..+..++.|+.|++++|.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~ 477 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNS 477 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCC
Confidence 4455555554432 33445555555555555555432 33334555555555555543
No 35
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.06 E-value=0.00012 Score=64.19 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=48.4
Q ss_pred EEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcc
Q 021418 10 ILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT 77 (312)
Q Consensus 10 ~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~ 77 (312)
++++.+...-++|..+....+|.+|+++++.+.. |..++++ .|+.|-+.++.+ ..+.+-+-.|+.
T Consensus 256 vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl--rTiRr~ii~~gT 321 (565)
T KOG0472|consen 256 VLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL--RTIRREIISKGT 321 (565)
T ss_pred eeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch--HHHHHHHHcccH
Confidence 3445555556899999888999999999998876 6778888 899999998876 334444444443
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.04 E-value=0.00034 Score=41.88 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=22.1
Q ss_pred CcceEEEeeceeeCCCCC-CCCCcccceeeecceeeC
Q 021418 29 QNLIHLELFNCLLKPPST-FKGFRNLKSLDLQHITLS 64 (312)
Q Consensus 29 ~~L~~L~L~~~~l~~~~~-~~~l~~L~~L~L~~~~~~ 64 (312)
++|++|++++|.+...+. +..|++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 356777777776665333 667777777777777654
No 37
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.02 E-value=0.00032 Score=67.68 Aligned_cols=200 Identities=22% Similarity=0.331 Sum_probs=120.4
Q ss_pred CcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCcee-------EEE-----------eCCCcceEEEeec--c-
Q 021418 50 FRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTH-------LNI-----------DAPNLQFFDIGGV--F- 108 (312)
Q Consensus 50 l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~-------~~i-----------~~p~L~~L~~~~~--~- 108 (312)
.=++++.++..+......+..+- . +.|++|.+.+.+.... +.| .-.+|++|+++|. +
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~-~-~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s 136 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLR-K-QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS 136 (699)
T ss_pred hheeEEeeccceecchhHHHHHh-h-ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence 33566677766666555444433 2 2388888876542211 111 1247888988883 1
Q ss_pred cce--eee-cCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcce
Q 021418 109 DDV--TFE-NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNY 185 (312)
Q Consensus 109 ~~~--~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~ 185 (312)
..+ .++ .+|+|+.+.+.+-.. ....+..+..++|+|..|++++..+.-+ .++. .+.||+.
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~~~~----------~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS-~LknLq~ 199 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISGRQF----------DNDDFSQLCASFPNLRSLDISGTNISNL------SGIS-RLKNLQV 199 (699)
T ss_pred ccHHHHHhhhCcccceEEecCcee----------cchhHHHHhhccCccceeecCCCCccCc------HHHh-ccccHHH
Confidence 122 122 589999999864332 1223567788999999999998766422 1222 3777887
Q ss_pred EEE-EEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEeEecchhHHHHHHH
Q 021418 186 LSI-RINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKF 264 (312)
Q Consensus 186 L~l-~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ 264 (312)
|.+ +..+....+ +..+ -...+|+.|+|+.............| -+|. .-|..+++.++.|+.-..++++.
T Consensus 200 L~mrnLe~e~~~~---l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qY-----lec~-~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 200 LSMRNLEFESYQD---LIDL-FNLKKLRVLDISRDKNNDDTKIIEQY-----LECG-MVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhccCCCCCchhh---HHHH-hcccCCCeeeccccccccchHHHHHH-----HHhc-ccCccccEEecCCcchhHHHHHH
Confidence 777 344544333 3334 35899999999886533110000111 3343 22555556667788877889999
Q ss_pred HHccCcccceeEEe
Q 021418 265 VLSNSPVLETMTIK 278 (312)
Q Consensus 265 ll~~~~~Le~~~i~ 278 (312)
+++.-+.|+.+..-
T Consensus 270 ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 270 LLNSHPNLQQIAAL 283 (699)
T ss_pred HHHhCccHhhhhhh
Confidence 99888888877744
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.00071 Score=57.29 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=66.7
Q ss_pred CcccCCcceEEEeeceeeCCCCC---C-CCCcccceeeecceeeC-hHHHHHHHhCCcccceeeeeccCC---ceeEEEe
Q 021418 24 SLFLCQNLIHLELFNCLLKPPST---F-KGFRNLKSLDLQHITLS-QDVFENLISSSPTLERLTLMNFDG---FTHLNID 95 (312)
Q Consensus 24 ~l~~~~~L~~L~L~~~~l~~~~~---~-~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~l~~~~~---~~~~~i~ 95 (312)
.+++...+..|.+-+|.++.... + ..++.++.|+|.+|.+. .+.+..++...|+|+.|.++.+.- +......
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 34444455567777777664222 2 35678999999999985 577888999999999999987642 2333334
Q ss_pred CCCcceEEEeecccce-----eeecCCcceEEEEeE
Q 021418 96 APNLQFFDIGGVFDDV-----TFENTFHLALVSIGL 126 (312)
Q Consensus 96 ~p~L~~L~~~~~~~~~-----~~~~~~~L~~l~l~~ 126 (312)
..+|+++.+.|..-+| .+.++|.++++.++.
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 4578888887743222 234556666665543
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.94 E-value=0.00014 Score=61.55 Aligned_cols=180 Identities=17% Similarity=0.149 Sum_probs=96.2
Q ss_pred ecCCCcccCCcceEEEeeceeeCCCCCCC-CCcccceeeecceeeChH-H------HH---------------HHHhCCc
Q 021418 20 KVPSSLFLCQNLIHLELFNCLLKPPSTFK-GFRNLKSLDLQHITLSQD-V------FE---------------NLISSSP 76 (312)
Q Consensus 20 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~-~l~~L~~L~L~~~~~~~~-~------l~---------------~ll~~cp 76 (312)
.+|..+....+|.+++++.|.-....++. .=|.|.++..+...+... . +. ..+-...
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred ccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 45555556688899998888543322221 235677776655433210 0 00 0011233
Q ss_pred ccceeeeeccCC--ceeEEEeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCC
Q 021418 77 TLERLTLMNFDG--FTHLNIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP 152 (312)
Q Consensus 77 ~Le~L~l~~~~~--~~~~~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 152 (312)
.|++|+++++.. ++.-.--.|.++.|.++.+ +..+ .+..+++|+.++++++.-. .+..+=..+.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls------------~~~Gwh~KLG 352 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA------------ECVGWHLKLG 352 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH------------hhhhhHhhhc
Confidence 466666665421 1111112467777766653 2111 2445777777777643211 1122333567
Q ss_pred CccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021418 153 HIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
|+++|.+..+.++.+ .++. ++.+|..|++..+ ...+++.+ .-+++.|+||.+.+..++.
T Consensus 353 NIKtL~La~N~iE~L------SGL~-KLYSLvnLDl~~N--~Ie~ldeV-~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL------SGLR-KLYSLVNLDLSSN--QIEELDEV-NHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred CEeeeehhhhhHhhh------hhhH-hhhhheecccccc--chhhHHHh-cccccccHHHHHhhcCCCc
Confidence 788888887766533 1222 4677887777433 23333333 3348889999998877653
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.61 E-value=0.0011 Score=58.14 Aligned_cols=48 Identities=27% Similarity=0.372 Sum_probs=37.4
Q ss_pred ceecCCCcc-cCCcceEEEeeceeeCC--CCCCCCCcccceeeecc-eeeCh
Q 021418 18 RYKVPSSLF-LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQH-ITLSQ 65 (312)
Q Consensus 18 ~~~lp~~l~-~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~-~~~~~ 65 (312)
+-.+|+..| ..++|++|+|+.|.+.. |..|.++++|.+|.+++ ++|++
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 347787655 57899999999997654 66788999999998888 66653
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.26 E-value=0.0098 Score=47.73 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=49.6
Q ss_pred cceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc--eeE--EEeCCCcceEEEe
Q 021418 30 NLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF--THL--NIDAPNLQFFDIG 105 (312)
Q Consensus 30 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~--~~~--~i~~p~L~~L~~~ 105 (312)
....++|+.|.+.....+.++++|.+|.+..|+++.-+ +.+-...|+|..|.+.++... ..+ -..+|+|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 44556666665554445566666666666666654310 112223456666666654311 111 1244666666665
Q ss_pred ec-------ccceeeecCCcceEEEEe
Q 021418 106 GV-------FDDVTFENTFHLALVSIG 125 (312)
Q Consensus 106 ~~-------~~~~~~~~~~~L~~l~l~ 125 (312)
|+ +..+.+..+|+|+.+++.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehh
Confidence 52 223345567777777764
No 42
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.24 E-value=0.00032 Score=61.62 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=31.5
Q ss_pred ceecCCCcccCCcceE-EEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021418 18 RYKVPSSLFLCQNLIH-LELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 86 (312)
Q Consensus 18 ~~~lp~~l~~~~~L~~-L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~ 86 (312)
..++|..+.....+++ +.++++.+.- +..+.++++|+.|+|+++-+.+ ++.-....-.|+.|+++.+
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh--cchhhhhhhhhheeccccc
Confidence 3456665554444443 2333333333 2234566666666666654421 2222223333666666544
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.19 E-value=0.0039 Score=37.23 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=28.9
Q ss_pred cccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021418 51 RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG 88 (312)
Q Consensus 51 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~ 88 (312)
++|+.|+++++.+++ ++..++.||+|+.|++++|..
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence 579999999999864 666689999999999998853
No 44
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.17 E-value=0.0016 Score=63.00 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021418 181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 181 ~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
.+|+.+.++.+ .. ..++..+..|++|+.+.+..+.
T Consensus 241 ~nl~~~dis~n--~l---~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 241 LNLQYLDISHN--NL---SNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred ccceeeecchh--hh---hcchHHHHhcccceEecccchh
Confidence 36776666322 22 2466777889999998887654
No 45
>PLN03150 hypothetical protein; Provisional
Probab=96.10 E-value=0.0048 Score=59.42 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=65.1
Q ss_pred ceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021418 6 VKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 6 v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
|..|+|+-... ...+|..+..+++|+.|+|++|.+.. |..+..+++|+.|+|++|.+.+. ++..++.+++|+.|++
T Consensus 420 v~~L~L~~n~L-~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGL-RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCc-cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence 45555543322 24788889999999999999998864 55688999999999999998764 5667889999999999
Q ss_pred eccCCc
Q 021418 84 MNFDGF 89 (312)
Q Consensus 84 ~~~~~~ 89 (312)
.+|...
T Consensus 498 s~N~l~ 503 (623)
T PLN03150 498 NGNSLS 503 (623)
T ss_pred cCCccc
Confidence 988643
No 46
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.74 E-value=0.0027 Score=58.94 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=44.2
Q ss_pred cCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCC
Q 021418 115 NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFND 194 (312)
Q Consensus 115 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~ 194 (312)
.+++|+.+++..+... ....+..+...+++++.|.+..+.- +..... ..+...+++|++|.+..+...
T Consensus 241 ~~~~L~~l~l~~~~~i---------sd~~l~~l~~~c~~L~~L~l~~c~~--lt~~gl-~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLV---------TDIGLSALASRCPNLETLSLSNCSN--LTDEGL-VSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhcc---------CchhHHHHHhhCCCcceEccCCCCc--cchhHH-HHHHHhcCcccEEeeecCccc
Confidence 3566666666544321 1222333334467777777543321 001000 112234667777777644332
Q ss_pred hhhHHHHHHhhhcCCCcceEEEEec
Q 021418 195 LEENLAALCLLRSSPNLQELEMLAR 219 (312)
Q Consensus 195 ~~~~~~l~~~L~~~p~Le~L~l~~~ 219 (312)
.+ .++..+..+||+|+.|.+...
T Consensus 309 -~d-~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 309 -TD-SGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred -hH-HHHHHHHHhCcchhhhhhhhc
Confidence 11 134555666887777665543
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.72 E-value=0.00063 Score=64.20 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=51.7
Q ss_pred cccceeeecceeeChHHHHHHHhCCcccceeeeeccC--CceeEEEeCCCcceEEEeecc-cce-eeecCCcceEEEEeE
Q 021418 51 RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD--GFTHLNIDAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGL 126 (312)
Q Consensus 51 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~--~~~~~~i~~p~L~~L~~~~~~-~~~-~~~~~~~L~~l~l~~ 126 (312)
|.|+.|+|++|.++.- . .+..||.|..|+|+++. -+..+......|..|.+.++. ..+ .+.++.+|+.+++++
T Consensus 187 ~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhhhccchhhhhhh--H-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhH
Confidence 4566666666655432 1 45667777777776653 233333444456666666642 211 245666667676654
Q ss_pred EEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeee
Q 021418 127 YVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF 163 (312)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 163 (312)
+-..+. .. ..+++.+..|+.|.+.+++
T Consensus 264 Nll~~h---------se-L~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 264 NLLSEH---------SE-LEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhcc---------hh-hhHHHHHHHHHHHhhcCCc
Confidence 322111 11 2345555566666665553
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.64 E-value=0.00041 Score=58.80 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=15.8
Q ss_pred CcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021418 50 FRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 86 (312)
Q Consensus 50 l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~ 86 (312)
...|++++|++|.++. +...+.-.|.++.|+++++
T Consensus 283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N 317 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQN 317 (490)
T ss_pred Hhhhhhccccccchhh--hhhhhhhccceeEEecccc
Confidence 3445555555554421 2223333455555555544
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.61 E-value=0.019 Score=46.18 Aligned_cols=57 Identities=28% Similarity=0.328 Sum_probs=25.9
Q ss_pred CcceEEEeeceeeCC-CCCC-CCCcccceeeecceeeCh-HHHHHHHhCCcccceeeeecc
Q 021418 29 QNLIHLELFNCLLKP-PSTF-KGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNF 86 (312)
Q Consensus 29 ~~L~~L~L~~~~l~~-~~~~-~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~~ 86 (312)
++|.+|.|.+|++.. .+.+ .-+|+|++|.|.+|++.. +++.. +..||.|++|++.++
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN 123 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence 455555555554433 1222 224555555555555421 12222 234555555555544
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.58 E-value=0.0075 Score=53.50 Aligned_cols=78 Identities=26% Similarity=0.382 Sum_probs=44.3
Q ss_pred CCcceEEEeeceeeCCCC---CC-CCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCC-----ceeEEEeCC
Q 021418 28 CQNLIHLELFNCLLKPPS---TF-KGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDG-----FTHLNIDAP 97 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~~~~---~~-~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~-----~~~~~i~~p 97 (312)
|..|+.|..++|...+.. .+ .++++|+.|-+..|. |++..+..+=.+||.||.+++..|.. +..+...+|
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 566666666666432211 11 355666666666665 55555555556666666666666532 233445566
Q ss_pred CcceEEEe
Q 021418 98 NLQFFDIG 105 (312)
Q Consensus 98 ~L~~L~~~ 105 (312)
.|+.+.++
T Consensus 373 ~lr~lsls 380 (483)
T KOG4341|consen 373 RLRVLSLS 380 (483)
T ss_pred hhccCChh
Confidence 66666655
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.04 E-value=0.0063 Score=50.63 Aligned_cols=84 Identities=23% Similarity=0.165 Sum_probs=56.1
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeCh-HHHHHHHhCCcccceeee
Q 021418 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTL 83 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l 83 (312)
.|+++.++-+....-++....-....|+.|.+.++.+.....+.-+|+||+|.++.+.+.. ..+.-++..||+|.+|.+
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l 98 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL 98 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence 3455555533221123444444557788888888888776777788999999999994322 236667778899999988
Q ss_pred eccCC
Q 021418 84 MNFDG 88 (312)
Q Consensus 84 ~~~~~ 88 (312)
+++..
T Consensus 99 s~Nki 103 (260)
T KOG2739|consen 99 SGNKI 103 (260)
T ss_pred cCCcc
Confidence 87643
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.98 E-value=0.013 Score=53.15 Aligned_cols=99 Identities=23% Similarity=0.228 Sum_probs=55.8
Q ss_pred cCCcceEEEeeceeeCCCCCC-CCC-cccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE--eCCCcceE
Q 021418 27 LCQNLIHLELFNCLLKPPSTF-KGF-RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI--DAPNLQFF 102 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~~~~~-~~l-~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i--~~p~L~~L 102 (312)
..+.+..|.+.++.+...+.. ..+ ++|+.|+++++.+.. ++.-+..+|.|+.|++.++....--.. ..++|+.+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 345677777777766553333 333 277888777776633 334456777788888777753321111 56677777
Q ss_pred EEeec-ccceee--ecCCcceEEEEeEE
Q 021418 103 DIGGV-FDDVTF--ENTFHLALVSIGLY 127 (312)
Q Consensus 103 ~~~~~-~~~~~~--~~~~~L~~l~l~~~ 127 (312)
.+++. +..+.- .....|+++.+..+
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCC
Confidence 77763 333321 12233666665543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.93 E-value=0.038 Score=46.56 Aligned_cols=165 Identities=20% Similarity=0.124 Sum_probs=79.4
Q ss_pred CCCCcccceeeecceeeCh---HHHHHHHhCCcccceeeeeccCCce----------------eEEEeCCCcceEEEeec
Q 021418 47 FKGFRNLKSLDLQHITLSQ---DVFENLISSSPTLERLTLMNFDGFT----------------HLNIDAPNLQFFDIGGV 107 (312)
Q Consensus 47 ~~~l~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~l~~~~~~~----------------~~~i~~p~L~~L~~~~~ 107 (312)
+..||.|.+.+|++|.|.. +.+..+++....|+.|.+.+|.... .-.-+.|.|+++....+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 4567777777777777653 3456677777777777777764221 01124456665554321
Q ss_pred -ccce-------eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHh--hcCCCccEEEEeeeehhhhcccCCCCCCC
Q 021418 108 -FDDV-------TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF--VHLPHIRRLEIQSYFLKYLAIGNVPSRLP 177 (312)
Q Consensus 108 -~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~l~~~~~~~l~~~~~~~~l~ 177 (312)
+... .+....+|..+.+..+....- .... ..+. .-+.+|+.|++..+++....+......++
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpe-------gv~~-L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~ 239 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPE-------GVTM-LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcc-------hhHH-HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence 1110 122224555555543321100 0011 1111 12456777777666553322222222333
Q ss_pred cccCCcceEEEEEEcCChhhHHHHHHhhh--cCCCcceEEEEecc
Q 021418 178 RPCVDLNYLSIRINFNDLEENLAALCLLR--SSPNLQELEMLARP 220 (312)
Q Consensus 178 ~~f~~L~~L~l~~~~~~~~~~~~l~~~L~--~~p~Le~L~l~~~~ 220 (312)
.+++|+.|.+..|+.+..+..++..-+. -.|+|..|..+.+.
T Consensus 240 -~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 240 -EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred -ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 3666777777555544333222222211 24777776665543
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.0042 Score=52.28 Aligned_cols=62 Identities=18% Similarity=0.056 Sum_probs=47.0
Q ss_pred cCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021418 27 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG 88 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~ 88 (312)
.++.|++|.|+-|.+.....+..|.+|+.|.|+.|.|.+-+--.-+.+.|+|+.|+|..+..
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 46788899998888877666788899999999988886532223356889999999987643
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.43 E-value=0.079 Score=47.82 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=55.5
Q ss_pred cCCcceEEEeeceeeCCCCCCCCCc-ccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEe
Q 021418 27 LCQNLIHLELFNCLLKPPSTFKGFR-NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIG 105 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~ 105 (312)
.|..+.+|++++|.+...+ .+| +|++|.+++|.-- ..++..+ .+.|++|.+.+|..+..+ .++|++|.+.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~ 120 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGL---PESVRSLEIK 120 (426)
T ss_pred HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccc---ccccceEEeC
Confidence 4788999999999666533 344 6999999886421 1122222 358999999988665433 3678888876
Q ss_pred ecccceeeecC-CcceEEEEe
Q 021418 106 GVFDDVTFENT-FHLALVSIG 125 (312)
Q Consensus 106 ~~~~~~~~~~~-~~L~~l~l~ 125 (312)
+.... .+..+ ++|+.+.+.
T Consensus 121 ~n~~~-~L~~LPssLk~L~I~ 140 (426)
T PRK15386 121 GSATD-SIKNVPNGLTSLSIN 140 (426)
T ss_pred CCCCc-ccccCcchHhheecc
Confidence 53211 12233 357777663
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.42 E-value=0.017 Score=53.52 Aligned_cols=82 Identities=34% Similarity=0.486 Sum_probs=47.6
Q ss_pred cccCCcceEEEeece-eeCC------CCCCCCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCCce-----e
Q 021418 25 LFLCQNLIHLELFNC-LLKP------PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFT-----H 91 (312)
Q Consensus 25 l~~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~-----~ 91 (312)
...|+.|+.|++++| .... ......+++|+.|++.++. +++..+..+...||.|+.|.+..|..+. .
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345677777777763 2111 1122345777777777766 6666666666667777777766665321 1
Q ss_pred EEEeCCCcceEEEee
Q 021418 92 LNIDAPNLQFFDIGG 106 (312)
Q Consensus 92 ~~i~~p~L~~L~~~~ 106 (312)
+.-.+|+|++|.+.+
T Consensus 290 i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 290 IAERCPSLRELDLSG 304 (482)
T ss_pred HHHhcCcccEEeeec
Confidence 222456677777665
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.08 E-value=0.012 Score=53.30 Aligned_cols=153 Identities=21% Similarity=0.240 Sum_probs=101.2
Q ss_pred cceecCCCcccCC-cceEEEeeceeeCCC-CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE
Q 021418 17 QRYKVPSSLFLCQ-NLIHLELFNCLLKPP-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI 94 (312)
Q Consensus 17 ~~~~lp~~l~~~~-~L~~L~L~~~~l~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i 94 (312)
....+|+.....+ +|+.|+++++.+... .....+++|+.|++..+.+.+ +.......+.|+.|+++++.... +..
T Consensus 127 ~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i~~-l~~ 203 (394)
T COG4886 127 NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISD-LPP 203 (394)
T ss_pred ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCcccc-Cch
Confidence 3468888777775 999999999988763 467899999999999998744 55555588999999999875432 222
Q ss_pred --eCCC-cceEEEeec-ccc--eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhc
Q 021418 95 --DAPN-LQFFDIGGV-FDD--VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLA 168 (312)
Q Consensus 95 --~~p~-L~~L~~~~~-~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~ 168 (312)
..++ |+++.+.++ ... ..+.+..++..+.+....... +...++.+++++.|++..+.+..+.
T Consensus 204 ~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~------------~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED------------LPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee------------ccchhccccccceeccccccccccc
Confidence 1333 888877775 322 123455555555543222110 0244667888999999888764332
Q ss_pred ccCCCCCCCcccCCcceEEEEEE
Q 021418 169 IGNVPSRLPRPCVDLNYLSIRIN 191 (312)
Q Consensus 169 ~~~~~~~l~~~f~~L~~L~l~~~ 191 (312)
. ++ .+.+++.|.++..
T Consensus 272 ~------~~-~~~~l~~L~~s~n 287 (394)
T COG4886 272 S------LG-SLTNLRELDLSGN 287 (394)
T ss_pred c------cc-ccCccCEEeccCc
Confidence 2 22 3778888888543
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.78 E-value=0.097 Score=44.21 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=100.6
Q ss_pred CCcceEEEeeceeeCC--CC----CCCCCcccceeeecceee---ChH------HHHHHHhCCcccceeeeeccCCce--
Q 021418 28 CQNLIHLELFNCLLKP--PS----TFKGFRNLKSLDLQHITL---SQD------VFENLISSSPTLERLTLMNFDGFT-- 90 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~~--~~----~~~~l~~L~~L~L~~~~~---~~~------~l~~ll~~cp~Le~L~l~~~~~~~-- 90 (312)
..+++.++|++|.+.. .. .+.+-.+|+.-.+++... .++ .+...+..||.|+..+++++-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5788999999998754 11 123445555555554321 111 233445799999999999874321
Q ss_pred -----eEEEeCCCcceEEEeec-ccce----------------eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHh
Q 021418 91 -----HLNIDAPNLQFFDIGGV-FDDV----------------TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF 148 (312)
Q Consensus 91 -----~~~i~~p~L~~L~~~~~-~~~~----------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l 148 (312)
.+-..+..|++|.++.+ +.++ ...+.|.|+.+.+.-+.... +....+...+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-------gs~~~~a~~l 181 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-------GSKELSAALL 181 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-------CcHHHHHHHH
Confidence 11224557888887641 2111 12356778777665333221 1111122334
Q ss_pred hcCCCccEEEEeeeehhhhcccCCC---CCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021418 149 VHLPHIRRLEIQSYFLKYLAIGNVP---SRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 149 ~~l~~l~~L~l~~~~~~~l~~~~~~---~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
..-.+++.+.+..+.++. .|... .++. -..+|+.|++..++-...+-..+...+...|.|+.|.+..|-.
T Consensus 182 ~sh~~lk~vki~qNgIrp--egv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 182 ESHENLKEVKIQQNGIRP--EGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HhhcCceeEEeeecCcCc--chhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 444678888887766531 11000 0111 2457777777555433333334666777788888888877643
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=0.022 Score=45.75 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=43.7
Q ss_pred eecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCCce
Q 021418 19 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFT 90 (312)
Q Consensus 19 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~ 90 (312)
+.+|-.-..-..++.++-+++.+.. ...+.+++.+++|.+..|. +.+..+..+=...|+|++|++++|..++
T Consensus 91 ~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 91 FSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred ecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 3555543334456666666654432 3345667777777777775 5555566665567777777777776543
No 60
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=91.29 E-value=0.32 Score=48.73 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=41.0
Q ss_pred CcceEEEeeceeeCCCCCCCCCcccceeeecceee-ChHHHHHHHhCCcccceeeeeccCCceeE
Q 021418 29 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITL-SQDVFENLISSSPTLERLTLMNFDGFTHL 92 (312)
Q Consensus 29 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~l~~~~~~~~~ 92 (312)
...++..+-++.+...+....++.|++|-+.++.. -...-..++...|.|+.|++++|.....+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 45677777777665444445667888888877752 11112234667888999998887665443
No 61
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.98 E-value=0.26 Score=24.83 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=13.1
Q ss_pred CcccceeeecceeeChHHHHH
Q 021418 50 FRNLKSLDLQHITLSQDVFEN 70 (312)
Q Consensus 50 l~~L~~L~L~~~~~~~~~l~~ 70 (312)
+++|++|+|++|.++++....
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 467888888888887765544
No 62
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=89.72 E-value=0.063 Score=47.59 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=52.6
Q ss_pred ceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021418 6 VKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 6 v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
|+-..+++...+-.++|..+- .+-+.++|..|.+.. +..|..+++|+.|+|+.|.|+.-+ +..+.+.+.|.+|.+
T Consensus 46 ~~g~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvl 122 (498)
T KOG4237|consen 46 VEGGIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVL 122 (498)
T ss_pred CCCceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHh
Confidence 444566665544445554432 234778888887654 567899999999999999875432 344567777888888
Q ss_pred eccC
Q 021418 84 MNFD 87 (312)
Q Consensus 84 ~~~~ 87 (312)
.++.
T Consensus 123 yg~N 126 (498)
T KOG4237|consen 123 YGNN 126 (498)
T ss_pred hcCC
Confidence 7643
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.36 E-value=0.04 Score=41.65 Aligned_cols=77 Identities=23% Similarity=0.256 Sum_probs=53.4
Q ss_pred cccCCcceEEEeeceeeCC-CCCCC-CCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceE
Q 021418 25 LFLCQNLIHLELFNCLLKP-PSTFK-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFF 102 (312)
Q Consensus 25 l~~~~~L~~L~L~~~~l~~-~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L 102 (312)
+..-..|...+|++|.+.. |+.|. .+|.+++|++..+.+. +++.-+...|.|+.|.++.+......++-+| |..|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRSLNLRFNPLNAEPRVIAP-LIKL 125 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhhcccccCccccchHHHHH-HHhH
Confidence 3344677888899988765 55554 4678999999988774 3555588899999999998865544444444 5555
Q ss_pred EE
Q 021418 103 DI 104 (312)
Q Consensus 103 ~~ 104 (312)
.+
T Consensus 126 ~~ 127 (177)
T KOG4579|consen 126 DM 127 (177)
T ss_pred HH
Confidence 43
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.87 E-value=0.24 Score=41.46 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=34.8
Q ss_pred CCcceEEEeeceeeCCCCC----CCCCcccceeeecceeeCh-HHHHHHHhCCcccceeeeeccCC
Q 021418 28 CQNLIHLELFNCLLKPPST----FKGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNFDG 88 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~~~~~----~~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~~~~ 88 (312)
+++|+.|.++.|.+.+... ...+|+|++|.+++|.+.. +.+.. +...++|..|++.+|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCc
Confidence 4677888887774332111 2345888888888877653 22222 23445566777776653
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.84 E-value=1.1 Score=40.78 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=48.4
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeece-eeCCCCCCCCCcccceeeeccee-eChHHHHHHHhCCccccee
Q 021418 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERL 81 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L 81 (312)
++.+.|+++.+. .-.+|. + -.+|+.|.+++| .+...+.. -.++|+.|.+.+|. +. .+ -+.|+.|
T Consensus 52 ~~l~~L~Is~c~--L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~--sL------P~sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCD--IESLPV-L--PNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEIS--GL------PESVRSL 117 (426)
T ss_pred cCCCEEEeCCCC--CcccCC-C--CCCCcEEEccCCCCcccCCch-hhhhhhheEccCccccc--cc------ccccceE
Confidence 456677775442 234552 1 135899999887 44432221 13589999998883 32 11 2457777
Q ss_pred eeeccCCceeEEEeCCCcceEEEee
Q 021418 82 TLMNFDGFTHLNIDAPNLQFFDIGG 106 (312)
Q Consensus 82 ~l~~~~~~~~~~i~~p~L~~L~~~~ 106 (312)
.+..+.. ..+..-.++|+.|.+.+
T Consensus 118 ~L~~n~~-~~L~~LPssLk~L~I~~ 141 (426)
T PRK15386 118 EIKGSAT-DSIKNVPNGLTSLSINS 141 (426)
T ss_pred EeCCCCC-cccccCcchHhheeccc
Confidence 7753321 12333335677776643
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.40 E-value=0.32 Score=24.00 Aligned_cols=14 Identities=36% Similarity=0.261 Sum_probs=8.4
Q ss_pred cceEEEeeceeeCC
Q 021418 30 NLIHLELFNCLLKP 43 (312)
Q Consensus 30 ~L~~L~L~~~~l~~ 43 (312)
+|+.|+|++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 35666666665543
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.36 E-value=0.015 Score=43.80 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=33.7
Q ss_pred ceEEEeeceeeCC----CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce--eEEEeCCCcceEEE
Q 021418 31 LIHLELFNCLLKP----PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT--HLNIDAPNLQFFDI 104 (312)
Q Consensus 31 L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~--~~~i~~p~L~~L~~ 104 (312)
+.-++|++|.+.- +..+....-|++.+|++|.+.+ .-..+...+|.+++|.+.++...+ .=-..-|.|+++.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3345555554321 1222334445555666655421 122445555666666666553211 00112255666655
Q ss_pred ee
Q 021418 105 GG 106 (312)
Q Consensus 105 ~~ 106 (312)
..
T Consensus 108 ~~ 109 (177)
T KOG4579|consen 108 RF 109 (177)
T ss_pred cc
Confidence 54
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.36 E-value=0.15 Score=41.06 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=47.0
Q ss_pred cccCCcceEEEeecee-eCC--CCCC-CCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCCc
Q 021418 25 LFLCQNLIHLELFNCL-LKP--PSTF-KGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGF 89 (312)
Q Consensus 25 l~~~~~L~~L~L~~~~-l~~--~~~~-~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~~ 89 (312)
+..++.++.|.+.+|. +++ ...+ +..++|++|+|++|. |++..+.-+ ...++|+.|.+.+-..+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcCchhh
Confidence 4567889999999994 554 2222 257899999999986 888777654 56788888888765443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.71 E-value=0.04 Score=46.61 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=53.4
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCC---CCCCCcccceeeecceeeC---hHHH-HHHHhCCc
Q 021418 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPS---TFKGFRNLKSLDLQHITLS---QDVF-ENLISSSP 76 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~---~~~~l~~L~~L~L~~~~~~---~~~l-~~ll~~cp 76 (312)
+.+|.|.|+++.. .--..+..|++|+.|+|..|.+.+.. -+.++|+|++|.|..|.-. +... ...+...|
T Consensus 41 p~lEVLsLSvNkI---ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 41 PLLEVLSLSVNKI---SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred ccceeEEeecccc---ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 4567777766652 22234667999999999999887633 3578999999999887532 2222 24556788
Q ss_pred ccceeee
Q 021418 77 TLERLTL 83 (312)
Q Consensus 77 ~Le~L~l 83 (312)
+|+.|+=
T Consensus 118 nLkKLDn 124 (388)
T KOG2123|consen 118 NLKKLDN 124 (388)
T ss_pred cchhccC
Confidence 8888874
No 70
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.37 E-value=0.66 Score=23.86 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=13.3
Q ss_pred Ccccceeeeccee-eChHHHHHH
Q 021418 50 FRNLKSLDLQHIT-LSQDVFENL 71 (312)
Q Consensus 50 l~~L~~L~L~~~~-~~~~~l~~l 71 (312)
+++|+.|+|++|. +++..+..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 4566777776664 666555543
No 71
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=85.90 E-value=0.23 Score=49.81 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=60.9
Q ss_pred eecCCCcc-cCCcceEEEeecee-eC-CCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeE---
Q 021418 19 YKVPSSLF-LCQNLIHLELFNCL-LK-PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHL--- 92 (312)
Q Consensus 19 ~~lp~~l~-~~~~L~~L~L~~~~-l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~--- 92 (312)
..++..++ .++.|++|+|++|. +. .|..++.|-+|+.|+++++.+. .++.-+.....|.+|++..+.....+
T Consensus 560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccch
Confidence 45555444 47899999999873 33 3667888999999999998875 36666677778999999877643322
Q ss_pred EEeCCCcceEEEee
Q 021418 93 NIDAPNLQFFDIGG 106 (312)
Q Consensus 93 ~i~~p~L~~L~~~~ 106 (312)
.-..++|++|.+.+
T Consensus 638 ~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 638 LLELQSLRVLRLPR 651 (889)
T ss_pred hhhcccccEEEeec
Confidence 22246777777765
No 72
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=85.31 E-value=1.8 Score=26.50 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=29.9
Q ss_pred cCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEE
Q 021418 180 CVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML 217 (312)
Q Consensus 180 f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~ 217 (312)
..+|+.+.+..-.....++.-+..++++++.|+++.|.
T Consensus 13 ~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 46899988854444556777788899999999999885
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.12 E-value=0.36 Score=44.22 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=37.6
Q ss_pred cccCCcceEEEeeceeeCCCCC-CCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021418 25 LFLCQNLIHLELFNCLLKPPST-FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 25 l~~~~~L~~L~L~~~~l~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
+..+++|..|++..+.+..... +..+++|+.|+|+++.++.- .. +..++.|+.|++.++.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~-l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EG-LSTLTLLKELNLSGNL 151 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc--cc-hhhccchhhheeccCc
Confidence 4456677777777777766555 66677777777777776431 11 2334447777777664
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=83.48 E-value=0.78 Score=21.01 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=4.9
Q ss_pred ccceeeecceee
Q 021418 52 NLKSLDLQHITL 63 (312)
Q Consensus 52 ~L~~L~L~~~~~ 63 (312)
+|+.|+|++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555543
No 75
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=79.91 E-value=0.32 Score=45.37 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=28.5
Q ss_pred ecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021418 20 KVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 86 (312)
Q Consensus 20 ~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~ 86 (312)
.+|..++.|+ |+.|-+++|++.. |..++..+.|..|+.++|.+ ..++.-+.....|++|.+..+
T Consensus 135 ~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhh
Confidence 3444444443 4555555554432 33444455555555555543 122223334444555555444
No 76
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=76.22 E-value=0.46 Score=44.33 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=50.9
Q ss_pred ceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeC
Q 021418 18 RYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDA 96 (312)
Q Consensus 18 ~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~ 96 (312)
...+|..+.-..+|..|+.+.|.+.. |+.++++.+|+.|.++.+++.. ++.-+. |=-|..|+++.++ +..+.+..
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~-~LpLi~lDfScNk-is~iPv~f 230 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELC-SLPLIRLDFSCNK-ISYLPVDF 230 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHh-CCceeeeecccCc-eeecchhh
Confidence 35788888877888889988887654 6778888888888888887632 333333 5557777776443 33344433
No 77
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=74.92 E-value=6.7 Score=25.77 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=30.9
Q ss_pred cCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021418 180 CVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 180 f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
..+|+.+.+..-.....++.-+..+++++|.|+.+.|...+
T Consensus 4 ~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 4 LSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred hheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 34688888854333456677788899999999999998754
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=74.23 E-value=1.5 Score=40.12 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=61.7
Q ss_pred cCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE-eCCCcceEEE
Q 021418 27 LCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DAPNLQFFDI 104 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i-~~p~L~~L~~ 104 (312)
.+..+..+.+..+.+.. -..+..+.+|+.|++.++.+.. +...+..|++|+.|+++++....-..+ ..+.|+.|.+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 45666777777766654 2336778888888888888743 334467788888888887743221111 2244777877
Q ss_pred eecc-ccee-eecCCcceEEEEeEEE
Q 021418 105 GGVF-DDVT-FENTFHLALVSIGLYV 128 (312)
Q Consensus 105 ~~~~-~~~~-~~~~~~L~~l~l~~~~ 128 (312)
.|+. ..+. +..+++|+.++++++.
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcch
Confidence 7743 2221 3346667777766544
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.54 E-value=3.6 Score=21.56 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=15.0
Q ss_pred cccceeeecceeeChHHHHH
Q 021418 51 RNLKSLDLQHITLSQDVFEN 70 (312)
Q Consensus 51 ~~L~~L~L~~~~~~~~~l~~ 70 (312)
++|+.|+|++|.+.++....
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 57889999999887665443
No 80
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=69.76 E-value=0.52 Score=45.41 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=20.6
Q ss_pred cccCCcceEEEeeceeeCCCCCC--CCCcccceeeecceee
Q 021418 25 LFLCQNLIHLELFNCLLKPPSTF--KGFRNLKSLDLQHITL 63 (312)
Q Consensus 25 l~~~~~L~~L~L~~~~l~~~~~~--~~l~~L~~L~L~~~~~ 63 (312)
+..|+.|++|+|++|++...+.+ .++. |..|.|++|.+
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence 44566667777776665543332 2333 55555555544
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=64.80 E-value=6.6 Score=28.85 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=29.1
Q ss_pred cCCC-cccCCcceEEEeece-eeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021418 21 VPSS-LFLCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 84 (312)
Q Consensus 21 lp~~-l~~~~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 84 (312)
+|.. +..|++|+.+.+... .--....|.++++|+.+.+... +..- -...+..|+.|+.+.+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFP 66 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEET
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-cccc-ceeeeeccccccccccc
Confidence 3443 345678888877643 2112345677778888887653 2110 11246677777777774
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=58.08 E-value=6.8 Score=19.81 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=10.7
Q ss_pred CcccceeeecceeeC
Q 021418 50 FRNLKSLDLQHITLS 64 (312)
Q Consensus 50 l~~L~~L~L~~~~~~ 64 (312)
+++|++|+|.+|.++
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 457788888877654
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=58.08 E-value=6.8 Score=19.81 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=10.7
Q ss_pred CcccceeeecceeeC
Q 021418 50 FRNLKSLDLQHITLS 64 (312)
Q Consensus 50 l~~L~~L~L~~~~~~ 64 (312)
+++|++|+|.+|.++
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 457788888877654
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=41.01 E-value=18 Score=18.65 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=9.6
Q ss_pred CcccceeeecceeeC
Q 021418 50 FRNLKSLDLQHITLS 64 (312)
Q Consensus 50 l~~L~~L~L~~~~~~ 64 (312)
+.+|+.|+++.|.++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777653
No 85
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=31.76 E-value=72 Score=20.50 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=22.4
Q ss_pred ccceeeecceeeChHHHHHHH-----hCCcccceeee
Q 021418 52 NLKSLDLQHITLSQDVFENLI-----SSSPTLERLTL 83 (312)
Q Consensus 52 ~L~~L~L~~~~~~~~~l~~ll-----~~cp~Le~L~l 83 (312)
+-+.+.+....++.+++..++ +..|.||.|.+
T Consensus 33 nc~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 33 NCKKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 446677777778777666665 47788888765
Done!