Query 021419
Match_columns 312
No_of_seqs 149 out of 687
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.9 1.5E-21 3.3E-26 215.0 20.3 194 108-310 1165-1403(2102)
2 PLN03200 cellulose synthase-in 99.8 2.4E-19 5.2E-24 197.9 22.0 209 86-308 12-232 (2102)
3 PF04564 U-box: U-box domain; 99.6 6.6E-17 1.4E-21 121.0 -0.9 65 6-73 3-72 (73)
4 KOG4224 Armadillo repeat prote 99.4 3E-12 6.5E-17 120.5 13.8 189 103-307 179-376 (550)
5 KOG4224 Armadillo repeat prote 99.4 9E-12 1.9E-16 117.3 14.5 193 101-307 218-417 (550)
6 PF05804 KAP: Kinesin-associat 99.3 7.4E-11 1.6E-15 121.7 19.2 178 110-305 268-451 (708)
7 smart00504 Ubox Modified RING 99.3 4.2E-13 9E-18 96.9 -0.0 58 8-65 2-63 (63)
8 PF05804 KAP: Kinesin-associat 99.2 3.1E-10 6.8E-15 117.1 14.6 145 155-307 264-411 (708)
9 PF04826 Arm_2: Armadillo-like 99.0 3.1E-08 6.7E-13 91.2 17.3 186 84-292 9-197 (254)
10 KOG0166 Karyopherin (importin) 99.0 2.3E-08 4.9E-13 99.2 16.9 187 89-292 111-300 (514)
11 cd00020 ARM Armadillo/beta-cat 98.9 2.9E-08 6.3E-13 78.8 13.0 118 129-255 3-120 (120)
12 KOG0166 Karyopherin (importin) 98.9 7.6E-08 1.6E-12 95.5 17.1 216 59-292 211-428 (514)
13 cd00020 ARM Armadillo/beta-cat 98.9 3.1E-08 6.7E-13 78.6 11.4 109 179-292 4-112 (120)
14 COG5064 SRP1 Karyopherin (impo 98.5 3.8E-06 8.2E-11 79.3 16.0 189 88-292 72-264 (526)
15 PF10508 Proteasom_PSMB: Prote 98.5 1.4E-05 3E-10 80.6 19.0 167 103-283 89-255 (503)
16 KOG4199 Uncharacterized conser 98.4 2.2E-05 4.7E-10 74.1 18.4 172 109-292 165-351 (461)
17 KOG1048 Neural adherens juncti 98.4 5.9E-06 1.3E-10 84.8 14.2 177 88-281 234-427 (717)
18 PF04826 Arm_2: Armadillo-like 98.3 1.9E-05 4.1E-10 72.8 14.8 160 130-306 9-175 (254)
19 KOG2122 Beta-catenin-binding p 98.2 2.7E-05 5.8E-10 84.2 15.4 191 110-307 317-530 (2195)
20 COG5064 SRP1 Karyopherin (impo 98.1 3.8E-05 8.2E-10 72.6 12.8 193 87-292 242-435 (526)
21 KOG0946 ER-Golgi vesicle-tethe 98.1 0.00018 3.8E-09 74.2 17.8 198 78-292 13-233 (970)
22 KOG1222 Kinesin associated pro 98.0 4.6E-05 9.9E-10 74.9 11.2 135 156-298 279-415 (791)
23 KOG1222 Kinesin associated pro 98.0 0.00012 2.6E-09 72.0 13.1 208 57-284 229-438 (791)
24 PF10508 Proteasom_PSMB: Prote 97.7 0.0028 6.1E-08 64.0 17.7 163 131-306 75-242 (503)
25 KOG2122 Beta-catenin-binding p 97.6 0.00028 6.1E-09 76.7 10.1 193 111-310 371-575 (2195)
26 KOG4500 Rho/Rac GTPase guanine 97.6 0.0031 6.7E-08 61.6 15.6 177 110-292 242-423 (604)
27 KOG4199 Uncharacterized conser 97.6 0.0029 6.3E-08 60.1 15.0 167 104-280 255-424 (461)
28 PF11789 zf-Nse: Zinc-finger o 97.6 7.7E-06 1.7E-10 58.1 -1.7 45 2-46 6-55 (57)
29 PF03224 V-ATPase_H_N: V-ATPas 97.5 0.0022 4.8E-08 60.7 13.2 180 89-281 107-293 (312)
30 KOG2160 Armadillo/beta-catenin 97.4 0.011 2.3E-07 56.5 16.6 178 102-292 94-274 (342)
31 KOG1048 Neural adherens juncti 97.3 0.0019 4.1E-08 66.8 11.0 151 154-310 247-419 (717)
32 KOG4642 Chaperone-dependent E3 97.1 0.00026 5.6E-09 64.2 2.5 57 10-67 214-276 (284)
33 KOG4500 Rho/Rac GTPase guanine 97.1 0.0086 1.9E-07 58.6 12.8 186 89-282 88-276 (604)
34 KOG0168 Putative ubiquitin fus 97.0 0.009 2E-07 62.5 12.7 188 87-292 167-356 (1051)
35 PF00514 Arm: Armadillo/beta-c 97.0 0.0015 3.2E-08 42.7 4.2 40 122-168 1-40 (41)
36 PF03224 V-ATPase_H_N: V-ATPas 96.9 0.01 2.2E-07 56.2 11.5 186 111-307 30-239 (312)
37 KOG2160 Armadillo/beta-catenin 96.8 0.028 6.1E-07 53.7 13.4 134 154-292 97-232 (342)
38 PF00514 Arm: Armadillo/beta-c 96.8 0.0021 4.5E-08 42.0 4.0 40 171-210 1-40 (41)
39 PF14664 RICTOR_N: Rapamycin-i 96.8 0.032 7E-07 54.3 13.8 174 114-305 6-186 (371)
40 KOG0946 ER-Golgi vesicle-tethe 96.7 0.019 4.2E-07 59.7 11.6 167 104-281 76-264 (970)
41 PF05536 Neurochondrin: Neuroc 96.5 0.063 1.4E-06 54.9 14.5 156 88-256 6-169 (543)
42 PF13646 HEAT_2: HEAT repeats; 96.5 0.016 3.4E-07 43.5 7.7 87 135-250 1-87 (88)
43 KOG0289 mRNA splicing factor [ 96.2 0.006 1.3E-07 59.3 4.5 104 9-132 2-132 (506)
44 KOG4646 Uncharacterized conser 95.9 0.16 3.4E-06 42.7 11.0 112 87-210 16-127 (173)
45 PF05536 Neurochondrin: Neuroc 95.9 0.095 2.1E-06 53.5 11.9 100 183-292 51-160 (543)
46 COG5113 UFD2 Ubiquitin fusion 95.8 0.0047 1E-07 62.6 2.2 62 6-67 853-919 (929)
47 KOG4646 Uncharacterized conser 95.6 0.063 1.4E-06 45.1 7.5 114 134-257 17-130 (173)
48 smart00185 ARM Armadillo/beta- 95.4 0.035 7.6E-07 35.4 4.6 38 215-254 3-40 (41)
49 smart00185 ARM Armadillo/beta- 95.4 0.032 6.8E-07 35.6 4.3 38 173-210 3-40 (41)
50 KOG3036 Protein involved in ce 95.3 0.85 1.8E-05 41.9 14.4 145 109-257 97-249 (293)
51 cd00256 VATPase_H VATPase_H, r 95.1 0.56 1.2E-05 46.5 13.9 169 103-280 113-286 (429)
52 PRK09687 putative lyase; Provi 95.0 0.51 1.1E-05 44.1 12.6 45 225-284 192-236 (280)
53 PF12348 CLASP_N: CLASP N term 94.9 0.21 4.6E-06 44.4 9.4 166 103-289 19-195 (228)
54 KOG2042 Ubiquitin fusion degra 94.7 0.012 2.7E-07 62.6 1.2 62 6-67 869-935 (943)
55 KOG0168 Putative ubiquitin fus 94.5 0.1 2.2E-06 54.9 7.0 119 183-305 168-293 (1051)
56 PF10165 Ric8: Guanine nucleot 94.4 0.36 7.9E-06 48.1 10.7 124 153-281 45-190 (446)
57 PRK09687 putative lyase; Provi 94.4 0.73 1.6E-05 43.1 12.1 114 134-292 160-274 (280)
58 cd00256 VATPase_H VATPase_H, r 94.1 1.7 3.6E-05 43.2 14.4 139 133-282 53-196 (429)
59 PF13646 HEAT_2: HEAT repeats; 94.1 0.23 5.1E-06 37.0 6.8 73 184-283 1-74 (88)
60 KOG3678 SARM protein (with ste 93.4 0.42 9.2E-06 47.6 8.7 122 178-306 176-306 (832)
61 PF04078 Rcd1: Cell differenti 93.1 2.9 6.2E-05 38.8 13.2 150 110-267 69-226 (262)
62 KOG1293 Proteins containing ar 93.0 1.6 3.5E-05 45.0 12.5 143 104-256 390-534 (678)
63 KOG1789 Endocytosis protein RM 92.8 1.1 2.3E-05 48.9 11.0 118 156-281 1741-1863(2235)
64 KOG1789 Endocytosis protein RM 92.6 1.5 3.3E-05 47.7 11.9 136 110-255 1744-1883(2235)
65 PRK13800 putative oxidoreducta 92.3 4 8.6E-05 44.3 15.3 28 133-167 652-679 (897)
66 PRK13800 putative oxidoreducta 91.9 3.5 7.6E-05 44.8 14.3 83 184-292 777-859 (897)
67 KOG2171 Karyopherin (importin) 91.8 2.4 5.3E-05 46.2 12.6 185 103-307 360-560 (1075)
68 PTZ00429 beta-adaptin; Provisi 91.4 9.9 0.00021 40.5 16.6 95 183-292 106-200 (746)
69 PF01602 Adaptin_N: Adaptin N 91.2 9.7 0.00021 38.0 15.9 94 183-292 80-173 (526)
70 PF13513 HEAT_EZ: HEAT-like re 90.6 0.91 2E-05 31.0 5.6 54 197-253 2-55 (55)
71 COG5096 Vesicle coat complex, 90.3 1.3 2.9E-05 46.7 8.8 93 152-256 104-196 (757)
72 PF14664 RICTOR_N: Rapamycin-i 90.0 7.9 0.00017 37.8 13.4 160 106-283 39-200 (371)
73 KOG1293 Proteins containing ar 89.9 3.6 7.8E-05 42.5 11.2 125 177-306 414-545 (678)
74 PF09759 Atx10homo_assoc: Spin 89.8 1.4 3E-05 35.0 6.6 65 110-179 5-69 (102)
75 PF01602 Adaptin_N: Adaptin N 88.9 4 8.6E-05 40.7 10.9 152 103-282 126-278 (526)
76 PF12031 DUF3518: Domain of un 88.7 1.4 3E-05 40.4 6.6 83 154-237 138-228 (257)
77 PF12348 CLASP_N: CLASP N term 88.1 12 0.00026 33.0 12.4 133 109-256 71-207 (228)
78 KOG1242 Protein containing ada 88.0 6.7 0.00015 40.2 11.6 132 133-283 213-345 (569)
79 PF11841 DUF3361: Domain of un 87.3 10 0.00022 32.6 10.7 119 180-304 9-142 (160)
80 PTZ00429 beta-adaptin; Provisi 87.0 6.1 0.00013 42.1 11.1 113 153-282 118-230 (746)
81 PF12755 Vac14_Fab1_bd: Vacuol 86.6 4.7 0.0001 31.6 7.7 69 182-254 27-95 (97)
82 PF09759 Atx10homo_assoc: Spin 86.5 4.5 9.8E-05 32.1 7.6 69 199-271 3-72 (102)
83 KOG2973 Uncharacterized conser 86.3 5.2 0.00011 38.0 9.1 99 184-292 5-103 (353)
84 PF08045 CDC14: Cell division 86.0 11 0.00024 34.9 11.0 99 156-255 107-207 (257)
85 PF11841 DUF3361: Domain of un 85.0 24 0.00052 30.3 12.3 124 129-256 7-132 (160)
86 PF11701 UNC45-central: Myosin 84.9 2.7 5.9E-05 35.7 6.1 103 185-292 46-151 (157)
87 PF08045 CDC14: Cell division 84.8 5.8 0.00013 36.7 8.6 93 108-206 108-202 (257)
88 KOG2734 Uncharacterized conser 84.0 19 0.00041 35.9 12.0 158 129-292 172-341 (536)
89 KOG1517 Guanine nucleotide bin 83.7 37 0.00081 37.5 14.8 194 58-283 452-654 (1387)
90 PF06371 Drf_GBD: Diaphanous G 83.3 14 0.00031 31.5 10.1 118 87-210 66-186 (187)
91 PF02985 HEAT: HEAT repeat; I 82.8 2.6 5.6E-05 25.5 3.8 29 226-255 1-29 (31)
92 PF10165 Ric8: Guanine nucleot 82.2 5.8 0.00013 39.6 8.1 100 205-309 4-123 (446)
93 PF13513 HEAT_EZ: HEAT-like re 80.9 3.4 7.4E-05 28.1 4.3 53 155-209 2-55 (55)
94 COG5096 Vesicle coat complex, 80.7 10 0.00022 40.3 9.4 95 183-292 93-187 (757)
95 PF12717 Cnd1: non-SMC mitotic 80.4 11 0.00024 32.5 8.3 91 154-256 2-93 (178)
96 KOG2611 Neurochondrin/leucine- 80.2 40 0.00087 34.2 12.7 142 105-253 25-180 (698)
97 TIGR00599 rad18 DNA repair pro 79.8 1.5 3.2E-05 43.1 2.9 62 6-67 25-90 (397)
98 KOG2171 Karyopherin (importin) 78.4 50 0.0011 36.5 13.9 97 181-283 347-443 (1075)
99 TIGR02270 conserved hypothetic 78.3 42 0.00091 33.2 12.5 13 55-67 26-39 (410)
100 KOG2973 Uncharacterized conser 77.8 67 0.0015 30.7 15.1 185 109-308 60-286 (353)
101 KOG1241 Karyopherin (importin) 77.6 30 0.00064 36.8 11.4 157 126-291 310-468 (859)
102 TIGR02270 conserved hypothetic 77.4 42 0.00091 33.2 12.2 27 183-209 148-174 (410)
103 PF12031 DUF3518: Domain of un 77.4 8.7 0.00019 35.3 6.8 87 195-284 137-229 (257)
104 cd03569 VHS_Hrs_Vps27p VHS dom 77.3 19 0.00041 30.1 8.5 73 182-255 41-114 (142)
105 KOG4413 26S proteasome regulat 77.2 72 0.0016 31.0 13.0 164 109-286 100-270 (524)
106 cd03561 VHS VHS domain family; 76.1 24 0.00051 29.0 8.7 74 182-256 37-113 (133)
107 PF02985 HEAT: HEAT repeat; I 75.9 6.5 0.00014 23.7 4.0 27 184-210 2-28 (31)
108 KOG2734 Uncharacterized conser 75.8 92 0.002 31.3 13.7 188 110-309 103-320 (536)
109 PF05918 API5: Apoptosis inhib 75.7 39 0.00083 34.8 11.7 53 104-169 17-69 (556)
110 COG5209 RCD1 Uncharacterized p 75.1 21 0.00046 32.7 8.6 144 110-257 119-270 (315)
111 PF08167 RIX1: rRNA processing 73.9 20 0.00043 30.6 8.0 72 183-255 26-97 (165)
112 PF12717 Cnd1: non-SMC mitotic 72.5 17 0.00037 31.3 7.3 84 195-292 1-84 (178)
113 COG5231 VMA13 Vacuolar H+-ATPa 72.4 31 0.00067 33.2 9.3 123 156-283 165-291 (432)
114 cd03568 VHS_STAM VHS domain fa 72.1 34 0.00073 28.7 8.8 73 182-255 37-110 (144)
115 KOG2979 Protein involved in DN 69.7 2.2 4.7E-05 39.2 1.1 63 4-67 173-241 (262)
116 smart00288 VHS Domain present 69.2 41 0.00088 27.6 8.5 73 182-255 37-111 (133)
117 PLN03208 E3 ubiquitin-protein 69.1 2.3 5.1E-05 37.5 1.1 55 7-61 18-90 (193)
118 KOG1077 Vesicle coat complex A 67.2 30 0.00065 36.6 8.6 94 183-290 330-423 (938)
119 PF11701 UNC45-central: Myosin 67.0 77 0.0017 26.7 10.2 93 156-251 59-155 (157)
120 cd03567 VHS_GGA VHS domain fam 66.0 52 0.0011 27.4 8.6 72 182-254 38-115 (139)
121 PF08324 PUL: PUL domain; Int 65.7 67 0.0015 29.2 10.2 163 104-278 76-251 (268)
122 PF12755 Vac14_Fab1_bd: Vacuol 63.9 52 0.0011 25.6 7.7 56 225-287 27-84 (97)
123 COG1413 FOG: HEAT repeat [Ener 63.3 1.1E+02 0.0024 28.6 11.4 31 225-256 180-210 (335)
124 KOG0212 Uncharacterized conser 62.0 93 0.002 32.2 10.8 73 182-257 336-408 (675)
125 PF01365 RYDR_ITPR: RIH domain 61.9 37 0.0008 29.8 7.4 125 125-257 35-171 (207)
126 PF00790 VHS: VHS domain; Int 61.0 48 0.001 27.3 7.5 71 183-254 43-117 (140)
127 PF11698 V-ATPase_H_C: V-ATPas 60.8 41 0.00088 27.5 6.8 72 182-255 43-115 (119)
128 PF14668 RICTOR_V: Rapamycin-i 60.1 32 0.0007 25.5 5.6 60 243-306 4-69 (73)
129 KOG0414 Chromosome condensatio 59.8 35 0.00076 37.9 7.9 130 134-287 920-1051(1251)
130 KOG0883 Cyclophilin type, U bo 59.1 2.8 6.1E-05 40.8 -0.3 47 10-56 43-91 (518)
131 KOG1062 Vesicle coat complex A 59.0 1.6E+02 0.0035 31.7 12.3 135 103-256 246-380 (866)
132 PF05004 IFRD: Interferon-rela 58.7 52 0.0011 31.2 8.2 67 183-252 87-157 (309)
133 PF04063 DUF383: Domain of unk 57.5 1.4E+02 0.0029 26.4 10.5 101 133-235 52-157 (192)
134 PF10363 DUF2435: Protein of u 56.8 47 0.001 25.6 6.3 70 184-257 5-74 (92)
135 cd03572 ENTH_epsin_related ENT 56.8 1.1E+02 0.0024 25.1 9.0 101 51-168 13-118 (122)
136 PF05918 API5: Apoptosis inhib 56.2 37 0.0008 35.0 7.1 75 193-282 33-107 (556)
137 PF11698 V-ATPase_H_C: V-ATPas 56.0 41 0.0009 27.4 6.1 110 26-167 4-113 (119)
138 KOG2759 Vacuolar H+-ATPase V1 55.4 1.3E+02 0.0029 29.8 10.4 121 157-281 174-299 (442)
139 KOG1061 Vesicle coat complex A 54.1 37 0.00081 35.9 6.8 93 153-257 99-191 (734)
140 KOG1967 DNA repair/transcripti 53.6 1.5E+02 0.0033 32.4 11.2 142 133-291 867-1015(1030)
141 PF04063 DUF383: Domain of unk 53.3 1.6E+02 0.0035 25.9 10.2 94 183-281 53-157 (192)
142 PF04641 Rtf2: Rtf2 RING-finge 53.2 4.2 9.2E-05 37.5 -0.2 51 5-56 111-167 (260)
143 PF05004 IFRD: Interferon-rela 53.0 1.8E+02 0.004 27.4 10.9 98 184-286 45-144 (309)
144 COG1413 FOG: HEAT repeat [Ener 51.4 1.4E+02 0.003 27.9 9.9 28 182-209 105-133 (335)
145 KOG2023 Nuclear transport rece 50.6 1.3E+02 0.0029 31.8 9.9 142 134-291 129-276 (885)
146 KOG1248 Uncharacterized conser 50.3 4E+02 0.0086 30.1 13.9 161 106-283 712-881 (1176)
147 KOG1077 Vesicle coat complex A 49.0 3.2E+02 0.007 29.3 12.4 52 156-210 345-397 (938)
148 KOG1242 Protein containing ada 46.5 3.6E+02 0.0077 28.0 12.7 157 109-281 272-463 (569)
149 PF04821 TIMELESS: Timeless pr 45.8 1.1E+02 0.0024 28.2 8.1 154 106-283 9-190 (266)
150 PF06025 DUF913: Domain of Unk 45.6 1.4E+02 0.003 29.2 9.0 97 181-282 105-207 (379)
151 PF14500 MMS19_N: Dos2-interac 44.4 2.4E+02 0.0051 26.1 10.0 139 103-253 11-151 (262)
152 KOG1062 Vesicle coat complex A 44.1 1.1E+02 0.0023 33.0 8.2 110 154-282 121-230 (866)
153 KOG3678 SARM protein (with ste 44.0 2.2E+02 0.0047 29.1 9.9 140 129-280 176-316 (832)
154 PF13764 E3_UbLigase_R4: E3 ub 43.7 4.6E+02 0.01 28.5 17.3 169 109-282 139-330 (802)
155 KOG0301 Phospholipase A2-activ 43.4 4.3E+02 0.0093 28.0 12.9 168 105-283 558-728 (745)
156 KOG0567 HEAT repeat-containing 42.7 56 0.0012 30.6 5.4 82 183-290 188-270 (289)
157 KOG2611 Neurochondrin/leucine- 42.6 1.4E+02 0.0031 30.5 8.5 76 198-281 79-162 (698)
158 KOG3039 Uncharacterized conser 42.0 13 0.00029 34.1 1.2 50 6-56 220-276 (303)
159 PF12397 U3snoRNP10: U3 small 41.8 1.3E+02 0.0028 23.9 7.0 68 183-257 7-76 (121)
160 PF13445 zf-RING_UBOX: RING-ty 41.0 5.7 0.00012 26.4 -1.0 33 10-43 1-43 (43)
161 COG5215 KAP95 Karyopherin (imp 40.3 1E+02 0.0022 32.1 7.2 117 133-256 321-438 (858)
162 PF06371 Drf_GBD: Diaphanous G 38.3 1.3E+02 0.0028 25.4 6.9 74 180-255 105-187 (187)
163 COG5240 SEC21 Vesicle coat com 38.1 5E+02 0.011 27.3 12.8 32 183-214 304-335 (898)
164 KOG2259 Uncharacterized conser 37.7 1.3E+02 0.0029 31.8 7.6 70 129-210 369-438 (823)
165 PF04388 Hamartin: Hamartin pr 37.5 5.2E+02 0.011 27.3 13.3 88 158-256 54-141 (668)
166 KOG2023 Nuclear transport rece 37.5 5.4E+02 0.012 27.5 12.7 143 103-257 140-287 (885)
167 KOG4413 26S proteasome regulat 37.2 4.1E+02 0.0088 26.0 14.5 145 156-307 187-345 (524)
168 KOG2999 Regulator of Rac1, req 36.9 5.1E+02 0.011 27.0 11.9 153 88-253 84-240 (713)
169 KOG4151 Myosin assembly protei 36.5 1.8E+02 0.0039 31.1 8.5 138 109-254 560-698 (748)
170 PF14663 RasGEF_N_2: Rapamycin 35.9 82 0.0018 25.2 4.9 40 226-270 9-48 (115)
171 KOG0212 Uncharacterized conser 34.8 1.4E+02 0.003 31.0 7.2 152 133-299 250-410 (675)
172 KOG2259 Uncharacterized conser 34.5 58 0.0013 34.3 4.5 89 180-284 371-459 (823)
173 COG5369 Uncharacterized conser 34.0 1.8E+02 0.004 30.1 7.8 135 111-255 409-545 (743)
174 PF13764 E3_UbLigase_R4: E3 ub 33.4 76 0.0016 34.3 5.4 69 219-292 112-192 (802)
175 PF08389 Xpo1: Exportin 1-like 32.6 2.5E+02 0.0055 22.2 8.8 96 181-282 25-137 (148)
176 PF06012 DUF908: Domain of Unk 32.2 1.9E+02 0.004 27.6 7.5 58 156-213 238-299 (329)
177 KOG1820 Microtubule-associated 32.2 3.7E+02 0.008 29.2 10.3 90 154-254 350-442 (815)
178 PF12719 Cnd3: Nuclear condens 31.8 3.9E+02 0.0084 24.8 9.5 97 154-256 41-144 (298)
179 PHA02334 hypothetical protein 31.6 27 0.00058 24.7 1.2 23 7-29 3-28 (64)
180 PF12830 Nipped-B_C: Sister ch 31.4 2.3E+02 0.0051 24.5 7.4 66 183-255 9-74 (187)
181 KOG2229 Protein required for a 31.2 2.6E+02 0.0057 28.7 8.3 112 132-254 15-128 (616)
182 KOG1020 Sister chromatid cohes 31.0 6.7E+02 0.014 29.4 12.0 131 125-281 807-938 (1692)
183 cd03569 VHS_Hrs_Vps27p VHS dom 30.9 2.5E+02 0.0055 23.3 7.2 73 86-168 40-113 (142)
184 PF06012 DUF908: Domain of Unk 29.8 2.4E+02 0.0053 26.8 7.8 62 196-257 236-299 (329)
185 KOG2759 Vacuolar H+-ATPase V1 29.5 72 0.0016 31.7 4.1 80 125-210 356-437 (442)
186 PF11810 DUF3332: Domain of un 29.3 15 0.00032 32.1 -0.6 14 32-47 69-82 (176)
187 smart00288 VHS Domain present 29.1 3E+02 0.0064 22.4 7.3 72 87-167 37-109 (133)
188 KOG1058 Vesicle coat complex C 28.1 8E+02 0.017 26.6 12.0 47 109-167 224-270 (948)
189 PF08167 RIX1: rRNA processing 27.1 3.9E+02 0.0084 22.6 10.6 116 85-210 19-142 (165)
190 PF00790 VHS: VHS domain; Int 27.0 3E+02 0.0064 22.5 7.0 74 87-167 42-116 (140)
191 PF03526 Microcin: Colicin E1 26.6 75 0.0016 22.2 2.6 35 6-46 16-53 (55)
192 KOG3036 Protein involved in ce 25.1 5.7E+02 0.012 23.9 11.4 144 157-306 96-258 (293)
193 TIGR03139 QueF-II 7-cyano-7-de 24.2 31 0.00066 28.0 0.5 12 39-50 28-39 (115)
194 KOG1824 TATA-binding protein-i 23.9 8.8E+02 0.019 27.1 11.1 89 182-281 966-1054(1233)
195 PF07814 WAPL: Wings apart-lik 23.2 3.8E+02 0.0083 25.8 7.9 97 86-192 20-116 (361)
196 PF14726 RTTN_N: Rotatin, an a 23.1 3.7E+02 0.0081 21.0 7.8 61 181-244 29-89 (98)
197 KOG1060 Vesicle coat complex A 21.8 3.7E+02 0.008 29.2 7.8 91 152-256 120-210 (968)
198 KOG0213 Splicing factor 3b, su 21.8 1.8E+02 0.0038 31.4 5.4 105 181-292 798-904 (1172)
199 PF11865 DUF3385: Domain of un 21.6 4.9E+02 0.011 21.9 9.7 137 135-292 12-149 (160)
200 cd03567 VHS_GGA VHS domain fam 21.5 4.7E+02 0.01 21.7 7.3 77 86-167 37-114 (139)
201 COG5098 Chromosome condensatio 21.5 4.4E+02 0.0095 28.4 8.1 58 153-212 359-416 (1128)
202 cd03568 VHS_STAM VHS domain fa 21.3 4.4E+02 0.0096 21.9 7.0 73 86-168 36-109 (144)
203 PF04078 Rcd1: Cell differenti 21.1 6.8E+02 0.015 23.3 13.2 193 105-306 9-229 (262)
204 COG0780 Enzyme related to GTP 20.7 39 0.00085 28.7 0.5 12 39-50 50-61 (149)
205 KOG1824 TATA-binding protein-i 20.5 1.9E+02 0.0042 31.9 5.5 127 153-292 583-714 (1233)
206 PF08216 CTNNBL: Catenin-beta- 20.3 1.7E+02 0.0037 23.4 4.0 36 242-281 62-97 (108)
207 KOG0567 HEAT repeat-containing 20.3 7.3E+02 0.016 23.4 10.7 55 11-66 103-160 (289)
208 PF10521 DUF2454: Protein of u 20.2 5E+02 0.011 24.0 7.8 73 182-255 119-203 (282)
209 KOG1061 Vesicle coat complex A 20.1 1.9E+02 0.0042 30.8 5.3 86 192-292 96-181 (734)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=1.5e-21 Score=215.00 Aligned_cols=194 Identities=15% Similarity=0.109 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHH
Q 021419 108 GRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCM 187 (312)
Q Consensus 108 ~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~l 187 (312)
+..|+++|+.+++++++||+||+++|++++|+.+|+..... ......++++++|. .+++.+..+..+++++++
T Consensus 1165 ~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~---s~e~a~~ElL~IL~----~~~e~~~~l~a~~~v~~L 1237 (2102)
T PLN03200 1165 PPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQD---STEEAASELLRILF----SSPELRRHESAFGAVNQL 1237 (2102)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCcc---chhHHHHHHHHHHh----CCHHHHHHhhhhhHHHHH
Confidence 56799999999999999999999999999999999765321 12455677777755 366777888888899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhccchHH-------------HH-----HhhhhhchHHHHHHhhcCCCChHHHH-----
Q 021419 188 VWFLKSGDLSRRRNTVLVLREVISSDHRR-------------VN-----MFLEIEGAIESLYTLIKEPICPTATE----- 244 (312)
Q Consensus 188 v~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~-------------~~-----~Ig~~~g~i~~LV~ll~~~~~~~a~~----- 244 (312)
+++|++|+.++|.+|+.+|++|... +++ .. ..+..++++.+|++++++..++++.+
T Consensus 1238 v~vL~~Gs~~aR~~Aa~aL~~L~~~-~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~ 1316 (2102)
T PLN03200 1238 VAVLRLGSRSARYSAARALQELFSA-EHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEG 1316 (2102)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhh-hhhhhhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccc
Confidence 9999999999999999999999766 442 22 33455688999999999988999999
Q ss_pred HHHHH----------------HHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccch-hhhhh-----ccCCHHHHHH
Q 021419 245 ASFVV----------------VYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSL-CEKPW-----VFSTDFAAVI 302 (312)
Q Consensus 245 ~Al~a----------------L~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~-~e~aL-----L~~~~eGR~a 302 (312)
.++.+ +++||.+--++++||.++|++|+|++||++|.+ +++. +|+++ ||.|+|||++
T Consensus 1317 a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~d-e~~~~~E~Al~vLd~Lc~~eegre~ 1395 (2102)
T PLN03200 1317 NALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVS-ESSTAQEAGVCALDRLLDDEQLAEL 1395 (2102)
T ss_pred hhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhc-cCchHHHHHHHHHHHHhcCHhhHHH
Confidence 99999 888887422236899999999999999999998 6665 99999 9999999999
Q ss_pred HhhcCCcc
Q 021419 303 TGEERPTI 310 (312)
Q Consensus 303 i~~~~~~~ 310 (312)
+..|+.+|
T Consensus 1396 ~~~h~a~v 1403 (2102)
T PLN03200 1396 VAAHGAVV 1403 (2102)
T ss_pred HHHcCChh
Confidence 99999987
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.83 E-value=2.4e-19 Score=197.87 Aligned_cols=209 Identities=12% Similarity=0.105 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHh-cCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 021419 86 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVD-YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 164 (312)
Q Consensus 86 ~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~-aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL 164 (312)
..++..+++++.+.. .+++++.+++++|+.+++++++||++|.+ +|++|.|+++|.+. +..++++|+++|
T Consensus 12 ~~~v~~Lve~L~s~~--ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg-------~~~vk~nAaaaL 82 (2102)
T PLN03200 12 LASVAQCIEQLRAKS--SSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG-------TLGAKVNAAAVL 82 (2102)
T ss_pred HHHHHHHHHHHHccc--CCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC-------CHHHHHHHHHHH
Confidence 568899999997642 14567788999999999999999999997 69999999999764 357899999999
Q ss_pred HhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccc--hHHHHHhhhhhchHHHHHHhhcCCCChH-
Q 021419 165 TLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD--HRRVNMFLEIEGAIESLYTLIKEPICPT- 241 (312)
Q Consensus 165 ~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~--~~~~~~Ig~~~g~i~~LV~ll~~~~~~~- 241 (312)
.+|+ .++++|..|...|+|++++++|++|+.+.|++|+.+|++|+..+ +.++..|+...|+++.|+.+++++....
T Consensus 83 ~nLS-~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~ 161 (2102)
T PLN03200 83 GVLC-KEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDK 161 (2102)
T ss_pred HHHh-cCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhH
Confidence 9995 46888988888999999999999999999999999999998664 5555566666699999999999872211
Q ss_pred -HHHHHHHHHHHhhcCCCCCcchHHH-HHHcCcHHHHHHHhhhcccchhhhhh-----cc-CCHHHHHHHhhcCC
Q 021419 242 -ATEASFVVVYHMITSASAADKPIQK-FVDMGLVSLLLETLVDAQRSLCEKPW-----VF-STDFAAVITGEERP 308 (312)
Q Consensus 242 -a~~~Al~aL~~L~~~~~~~~~Nr~~-~V~~G~V~~LvelL~~~~~~~~e~aL-----L~-~~~eGR~ai~~~~~ 308 (312)
..+.|..+|+|||.++ .|+.+ ++++|+|+.|+++|.+.+....+.|. +| .+++++.++.+.+.
T Consensus 162 ~L~~~Av~AL~nLs~~~----en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGa 232 (2102)
T PLN03200 162 VVEGLLTGALRNLCGST----DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGA 232 (2102)
T ss_pred HHHHHHHHHHHHHhcCc----cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 2345678999999986 78765 58999999999999876666666655 44 45789999986543
No 3
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.60 E-value=6.6e-17 Score=121.00 Aligned_cols=65 Identities=15% Similarity=0.011 Sum_probs=52.4
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhhHHH-H-hhCCCcccccccccCCCCccccchhh--hhhhchhhhhcc
Q 021419 6 HVRLINLAKWLVESAWVA-LRLFQERCEEE-L-LWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKFNLQREK 73 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~~~e-~-~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~~~~~n~ 73 (312)
+.|+||+|..||+|||+. ++++|||..|+ | ..++.+||.|+++|...+++||+.|| |++|+. +|.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~---~~~ 72 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCA---ENK 72 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHH---HCT
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHH---Hcc
Confidence 579999999999999977 88999999888 3 33589999999999999999999999 999998 653
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=3e-12 Score=120.51 Aligned_cols=189 Identities=16% Similarity=0.206 Sum_probs=150.7
Q ss_pred CCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccC--
Q 021419 103 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS-- 180 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~-- 180 (312)
+|.-.+..+...+..++- +.+||+.++.+|.+|+|++++.+++ ..+++.+-+++.+++. +..++++++.
T Consensus 179 kdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d-------~dvqyycttaisnIaV-d~~~Rk~Laqae 249 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGD-------LDVQYYCTTAISNIAV-DRRARKILAQAE 249 (550)
T ss_pred chhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCC-------hhHHHHHHHHhhhhhh-hHHHHHHHHhcc
Confidence 455556678888877776 5569999999999999999998763 4678888888888755 6677888774
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCC
Q 021419 181 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAA 260 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~ 260 (312)
|..++.+|.++..|+...|-.|..+|..|++. .++...|-++ |.+|.||++|+++ .-...-+...++.|++.++
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~a-g~lP~lv~Llqs~-~~plilasVaCIrnisihp--- 323 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEA-GSLPLLVELLQSP-MGPLILASVACIRNISIHP--- 323 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhc-CCchHHHHHHhCc-chhHHHHHHHHHhhccccc---
Confidence 66999999999999999999999999999755 5566666587 9999999999887 4456777889999999986
Q ss_pred cchHHHHHHcCcHHHHHHHhhhcccc-h---hhhhh--ccC-CHHHHHHHhhcC
Q 021419 261 DKPIQKFVDMGLVSLLLETLVDAQRS-L---CEKPW--VFS-TDFAAVITGEER 307 (312)
Q Consensus 261 ~~Nr~~~V~~G~V~~LvelL~~~~~~-~---~e~aL--L~~-~~eGR~ai~~~~ 307 (312)
-|-..++++|.+.+|+.+|.-++.. . +...| |+. ..--+.+|.+.+
T Consensus 324 -lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg 376 (550)
T KOG4224|consen 324 -LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG 376 (550)
T ss_pred -CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC
Confidence 7999999999999999999755443 2 22333 655 444666666554
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=9e-12 Score=117.34 Aligned_cols=193 Identities=16% Similarity=0.089 Sum_probs=153.7
Q ss_pred cCCCchhhhHHHHHHHHHHHhchhhhHHHHhcC--CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhc
Q 021419 101 KSEDQTGGRDLVAKIKKWIKESERNKRCIVDYG--AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYL 178 (312)
Q Consensus 101 ~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG--~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l 178 (312)
+++|...+.-+-..|..++-+ .++|+.++++| ++|.|++++..++ .++...|--+|.+|+. +.+...-|
T Consensus 218 ~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s-------~kvkcqA~lALrnlas-dt~Yq~ei 288 (550)
T KOG4224|consen 218 KSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGS-------DKVKCQAGLALRNLAS-DTEYQREI 288 (550)
T ss_pred ccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCC-------hHHHHHHHHHHhhhcc-cchhhhHH
Confidence 346777777777778777764 46999999998 9999999997663 4677787778888854 67777778
Q ss_pred cCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCC
Q 021419 179 GSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSAS 258 (312)
Q Consensus 179 ~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~ 258 (312)
.+.|.+|.++++|++....--...++.+.+++ ..+-+.-.|.+. ||+.+||++|+-+.+....-.|..+|+||+.+.
T Consensus 289 v~ag~lP~lv~Llqs~~~plilasVaCIrnis-ihplNe~lI~da-gfl~pLVrlL~~~dnEeiqchAvstLrnLAass- 365 (550)
T KOG4224|consen 289 VEAGSLPLLVELLQSPMGPLILASVACIRNIS-IHPLNEVLIADA-GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS- 365 (550)
T ss_pred HhcCCchHHHHHHhCcchhHHHHHHHHHhhcc-cccCcccceecc-cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-
Confidence 89999999999998876666667788888885 546666677677 999999999997756668889999999997633
Q ss_pred CCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh-----ccCCHHHHHHHhhcC
Q 021419 259 AADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFSTDFAAVITGEER 307 (312)
Q Consensus 259 ~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L~~~~eGR~ai~~~~ 307 (312)
+.|+..+.+.|+|+-|++++.|+.-++.+..- |+-..+-|.++.+.+
T Consensus 366 --e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~g 417 (550)
T KOG4224|consen 366 --EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSG 417 (550)
T ss_pred --hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcC
Confidence 48999999999999999999998666665533 555567777777654
No 6
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.33 E-value=7.4e-11 Score=121.68 Aligned_cols=178 Identities=15% Similarity=0.173 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHH
Q 021419 110 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVW 189 (312)
Q Consensus 110 ~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~ 189 (312)
-++.-|-+++.+. +++..+.+.|.++.|+.+|.+. +.+++-.+++.|..|+ ...+||..+++.|.++.+++
T Consensus 268 v~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~-------n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL~k 338 (708)
T PF05804_consen 268 VAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDRE-------NEELLILAVTFLKKLS-IFKENKDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHH
Confidence 3566677777755 5888889999999999999755 4578888999999994 46889999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 021419 190 FLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVD 269 (312)
Q Consensus 190 ~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~ 269 (312)
+|.+++.+.+..|..+|++||.. ++.+..|-+. |+++.|+.++.++ .....++.+|||||..+ ++|..+..
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~-GlIPkLv~LL~d~---~~~~val~iLy~LS~dd----~~r~~f~~ 409 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFD-PELRSQMVSL-GLIPKLVELLKDP---NFREVALKILYNLSMDD----EARSMFAY 409 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHC-CCcHHHHHHhCCC---chHHHHHHHHHHhccCH----hhHHHHhh
Confidence 99999999999999999999744 6667777576 9999999999876 34456999999999985 89999999
Q ss_pred cCcHHHHHHHhhhcccchhhh---hh---ccCCHHHHHHHhh
Q 021419 270 MGLVSLLLETLVDAQRSLCEK---PW---VFSTDFAAVITGE 305 (312)
Q Consensus 270 ~G~V~~LvelL~~~~~~~~e~---aL---L~~~~eGR~ai~~ 305 (312)
.++|+.|+++|.+....-.+. ++ |+....=-+.|++
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~ 451 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE 451 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh
Confidence 999999999997653222222 22 5555544455553
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.29 E-value=4.2e-13 Score=96.94 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=52.9
Q ss_pred hhhhhhHHHhhhhccc-chhhHHhhHHH-HhhCCCcccccccccCCCCccccchhh--hhhh
Q 021419 8 RLINLAKWLVESAWVA-LRLFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQT 65 (312)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~er~~~e-~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~W 65 (312)
+.||+++++|+||++. .+++|+|..|+ |+..+.+||+|++++...+++||+.|| |++|
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 6799999999999987 78999999776 555689999999999989999999999 9999
No 8
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.18 E-value=3.1e-10 Score=117.09 Aligned_cols=145 Identities=16% Similarity=0.149 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhh
Q 021419 155 SVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLI 234 (312)
Q Consensus 155 ~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll 234 (312)
.++..++.+|.+|+. +..++..+...+.++.++++|.+++.+....++.+|..||-. .+++..|++. |+++.|++++
T Consensus 264 qLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~-giV~kL~kLl 340 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAES-GIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHc-CCHHHHHHHh
Confidence 355667788999854 566677778899999999999999999999999999999744 7789999776 9999999999
Q ss_pred cCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcc-cchhhhhh--ccCCHHHHHHHhhcC
Q 021419 235 KEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQ-RSLCEKPW--VFSTDFAAVITGEER 307 (312)
Q Consensus 235 ~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~-~~~~e~aL--L~~~~eGR~ai~~~~ 307 (312)
..+ +....+.|+++|+||+..+ .+|.+||+.|+||.|+.+|.+.. +.++-+.| ++...++|..|....
T Consensus 341 ~s~-~~~l~~~aLrlL~NLSfd~----~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~Td 411 (708)
T PF05804_consen 341 PSE-NEDLVNVALRLLFNLSFDP----ELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTD 411 (708)
T ss_pred cCC-CHHHHHHHHHHHHHhCcCH----HHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcc
Confidence 876 7789999999999999986 89999999999999999998643 34555555 888888998886553
No 9
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.98 E-value=3.1e-08 Score=91.18 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=149.3
Q ss_pred CChHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHH
Q 021419 84 MSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILST 163 (312)
Q Consensus 84 ~~~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~i 163 (312)
+++.+.+.++.-|... .|+..+..++-.+-..+. .+.|+..+.+.|.++.+..+|... +..+++.|+-+
T Consensus 9 l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p-------~~~vr~~AL~a 77 (254)
T PF04826_consen 9 LEAQELQKLLCLLEST---EDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDP-------NPSVREKALNA 77 (254)
T ss_pred cCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCC-------ChHHHHHHHHH
Confidence 5667888888888754 678888878888877655 567999999999999999999765 35789999999
Q ss_pred HHhcCCCChhHHHhccCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChH
Q 021419 164 LTLLFPLAGEALTYLGSASSMHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPT 241 (312)
Q Consensus 164 L~~L~~~~~e~k~~l~~~~~l~~lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~ 241 (312)
|.+|+. +.+|+..|. ..++.+..-+.++ +.+.+..+..+|.+|+ ..+++...+.+ .++.|+.+|..| +..
T Consensus 78 L~Nls~-~~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt-v~~~~~~~l~~---~i~~ll~LL~~G-~~~ 149 (254)
T PF04826_consen 78 LNNLSV-NDENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLT-VTNDYHHMLAN---YIPDLLSLLSSG-SEK 149 (254)
T ss_pred HHhcCC-ChhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccC-CCcchhhhHHh---hHHHHHHHHHcC-ChH
Confidence 999954 667777664 2577777766666 5688889999999996 44556666733 599999999988 778
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhc-ccchhhhhh
Q 021419 242 ATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA-QRSLCEKPW 292 (312)
Q Consensus 242 a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~-~~~~~e~aL 292 (312)
.+..++++|.||+..+ .+...++.+++++.++.++... .+.+...+|
T Consensus 150 ~k~~vLk~L~nLS~np----~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l 197 (254)
T PF04826_consen 150 TKVQVLKVLVNLSENP----DMTRELLSAQVLSSFLSLFNSSESKENLLRVL 197 (254)
T ss_pred HHHHHHHHHHHhccCH----HHHHHHHhccchhHHHHHHccCCccHHHHHHH
Confidence 8899999999999986 7999999999999999999654 455555655
No 10
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.3e-08 Score=99.16 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=149.9
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021419 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
+..+|.-+.. ..++.-+.+|.-.|..+|..+...-+.++++|++|.++.++.+. +..++|.|+-+|.+++
T Consensus 111 v~~lV~~l~~---~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~-------~~~v~eQavWALgNIa 180 (514)
T KOG0166|consen 111 VPRLVEFLSR---DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP-------SADVREQAVWALGNIA 180 (514)
T ss_pred HHHHHHHHcc---CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-------cHHHHHHHHHHHhccc
Confidence 3344554532 23466678999999999999998999999999999999999876 3579999999999997
Q ss_pred CCChhHHHhccCCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhccc-h-HHHHHhhhhhchHHHHHHhhcCCCChHHHHH
Q 021419 169 PLAGEALTYLGSASSMHCMVWFLKSGD-LSRRRNTVLVLREVISSD-H-RRVNMFLEIEGAIESLYTLIKEPICPTATEA 245 (312)
Q Consensus 169 ~~~~e~k~~l~~~~~l~~lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~-~-~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~ 245 (312)
-+....|+.+.+.|.++++..++...+ ..-..+++-+|.+|+.-. + .....+ ..+++.|..+|... ++....+
T Consensus 181 gds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v---~~iLp~L~~ll~~~-D~~Vl~D 256 (514)
T KOG0166|consen 181 GDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV---APILPALLRLLHST-DEEVLTD 256 (514)
T ss_pred cCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHHHHHhcC-CHHHHHH
Confidence 766888999889999999999998775 478889999999998654 2 122333 46899999999877 8899999
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 246 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 246 Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
|.-+|.+|+... .+....++++|.++.|+++|...+..+.--||
T Consensus 257 a~WAlsyLsdg~---ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaL 300 (514)
T KOG0166|consen 257 ACWALSYLTDGS---NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPAL 300 (514)
T ss_pred HHHHHHHHhcCC---hHHHHHHHHccchHHHHHHHcCCCcccccHHH
Confidence 999999999654 26778888999999999999765544443344
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.92 E-value=2.9e-08 Score=78.79 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=100.9
Q ss_pred HHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 021419 129 IVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLRE 208 (312)
Q Consensus 129 l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~ 208 (312)
+.+.|+++.|+.+|... +..+++.++.+|.+++..+++....+.+.+.++.++.+|++.+...+.+|+.+|.+
T Consensus 3 ~~~~~~i~~l~~~l~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~ 75 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRN 75 (120)
T ss_pred HHHcCChHHHHHHHHcC-------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56789999999999754 35789999999999976657777777778999999999999999999999999999
Q ss_pred HhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 209 VISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 209 Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
|+...+.....+... |+++.|++++.+. +...++.|+.+|.+||.
T Consensus 76 l~~~~~~~~~~~~~~-g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 76 LAAGPEDNKLIVLEA-GGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HccCcHHHHHHHHHC-CChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 987655666666454 9999999999877 78999999999999873
No 12
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=7.6e-08 Score=95.49 Aligned_cols=216 Identities=13% Similarity=0.166 Sum_probs=163.7
Q ss_pred hhhhhhhchhhhhccccCCCCCCCCCCh-HHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHH
Q 021419 59 SLLYQQTKFNLQREKSEGYAKLGIPMSS-VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSV 137 (312)
Q Consensus 59 tLrIq~Wc~~~~~n~~~gv~tp~~p~~~-~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~ 137 (312)
.+|--.|+. .|-+.|-. |.||.+. ..+...+.++-. ..|++.+..|.-.|+.++..+.+.=..+.++|++|.
T Consensus 211 ~lRn~tW~L---sNlcrgk~-P~P~~~~v~~iLp~L~~ll~---~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~ 283 (514)
T KOG0166|consen 211 MLRNATWTL---SNLCRGKN-PSPPFDVVAPILPALLRLLH---STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPR 283 (514)
T ss_pred HHHHHHHHH---HHHHcCCC-CCCcHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHH
Confidence 344678998 55555533 5555432 233333333332 357777778999999999888877778899999999
Q ss_pred HHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHH
Q 021419 138 LAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRR 216 (312)
Q Consensus 138 Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~ 216 (312)
|+.+|.... ..++--||.++-+....+++....+...+.++.+..+|.+- .-..|..|+-+|-+++.-..+.
T Consensus 284 LV~lL~~~~-------~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~q 356 (514)
T KOG0166|consen 284 LVDLLGHSS-------PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQ 356 (514)
T ss_pred HHHHHcCCC-------cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHH
Confidence 999997552 24667788888888777777777777999999999999854 4458899999999998655566
Q ss_pred HHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 217 VNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 217 ~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
...+-++ |+++.|++++..+ +.+.+|.|.-++.|++.... .+-..-+|+.|+|++|-.+|.-.+..+...+|
T Consensus 357 iqaVida-~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii~v~L 428 (514)
T KOG0166|consen 357 IQAVIDA-NLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKIILVAL 428 (514)
T ss_pred HHHHHHc-ccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHHHHHH
Confidence 6666587 9999999999988 67899999999999987631 34677899999999999999644666655555
No 13
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.87 E-value=3.1e-08 Score=78.65 Aligned_cols=109 Identities=16% Similarity=0.245 Sum_probs=94.1
Q ss_pred cCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCC
Q 021419 179 GSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSAS 258 (312)
Q Consensus 179 ~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~ 258 (312)
.+.|.++.++.+|++++.+.|..|+.+|.+++...+.....+-+. |+++.|++++.++ +++.++.|+.+|.+++...
T Consensus 4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~- 80 (120)
T cd00020 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSE-DEEVVKAALWALRNLAAGP- 80 (120)
T ss_pred HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc-
Confidence 356899999999999999999999999999987656666666354 9999999999987 8899999999999999875
Q ss_pred CCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 259 AADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 259 ~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+.++..+++.|.++.|+++|.+.+..+.+.++
T Consensus 81 --~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~ 112 (120)
T cd00020 81 --EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNAT 112 (120)
T ss_pred --HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHH
Confidence 36788899999999999999877667777766
No 14
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.54 E-value=3.8e-06 Score=79.29 Aligned_cols=189 Identities=14% Similarity=0.177 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchh-hhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 021419 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESER-NKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 166 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~-nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~ 166 (312)
+...+.+++-+ .|.+.+.+|+.+.|++-...+. --..+.++|++|-++.++.+... -..+=+|.=+|.+
T Consensus 72 elp~lt~~l~S----dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~------~mlqfEAaWalTN 141 (526)
T COG5064 72 ELPQLTQQLFS----DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQR------DMLQFEAAWALTN 141 (526)
T ss_pred hhHHHHHHHhh----hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcch------hHHHHHHHHHHhh
Confidence 34556666654 5778889999999987654433 33357888999999999965421 1244566678888
Q ss_pred cCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC-CChHHHHH
Q 021419 167 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP-ICPTATEA 245 (312)
Q Consensus 167 L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~-~~~~a~~~ 245 (312)
+++......+++++.|++|.++.+|.+++.+.|++|+=+|-+++.+++.++..+-.. |+++.|+.++.+. .+-...+.
T Consensus 142 iaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~-galeplL~ll~ss~~~ismlRn 220 (526)
T COG5064 142 IASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC-GALEPLLGLLLSSAIHISMLRN 220 (526)
T ss_pred hccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc-CchHHHHHHHHhccchHHHHHH
Confidence 877554444567799999999999999999999999999999998888888877676 9999999998755 34478899
Q ss_pred HHHHHHHhhcCCCCCc--chHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 246 SFVVVYHMITSASAAD--KPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 246 Al~aL~~L~~~~~~~~--~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
|-=+|.|||..+...+ .|..+ ++|.|.+++-..+..+...|.
T Consensus 221 ~TWtLSNlcRGknP~P~w~~isq-----alpiL~KLiys~D~evlvDA~ 264 (526)
T COG5064 221 ATWTLSNLCRGKNPPPDWSNISQ-----ALPILAKLIYSRDPEVLVDAC 264 (526)
T ss_pred hHHHHHHhhCCCCCCCchHHHHH-----HHHHHHHHHhhcCHHHHHHHH
Confidence 9999999997541111 24444 678888888655555555544
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.46 E-value=1.4e-05 Score=80.61 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=137.6
Q ss_pred CCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCC
Q 021419 103 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 182 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~ 182 (312)
.++..+.-+++.|.+++.+++.--..+.+.++++.++..|... +..+.+.|..+|..|+. ....-..+.+++
T Consensus 89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-------d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~ 160 (503)
T PF10508_consen 89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-------DLSVAKAAIKALKKLAS-HPEGLEQLFDSN 160 (503)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-------cHHHHHHHHHHHHHHhC-CchhHHHHhCcc
Confidence 3455555688889999988887666778889999999999654 35788999999999865 334444455667
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
.+..+..++.+.+...|.....++-++++.+++....+-+. |+++.+++-+.++ +.-...+|+.+|..|+..+ .
T Consensus 161 ~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~s-gll~~ll~eL~~d-DiLvqlnalell~~La~~~----~ 234 (503)
T PF10508_consen 161 LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNS-GLLDLLLKELDSD-DILVQLNALELLSELAETP----H 234 (503)
T ss_pred hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhc-cHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcCh----h
Confidence 79999999988787888889999999988888777777565 9999999999875 7778889999999999875 7
Q ss_pred hHHHHHHcCcHHHHHHHhhhc
Q 021419 263 PIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~ 283 (312)
+..-+++.|.++.|.+++.+.
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhcc
Confidence 999999999999999999653
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=2.2e-05 Score=74.12 Aligned_cols=172 Identities=10% Similarity=0.130 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCCh---------hHHHhcc
Q 021419 109 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAG---------EALTYLG 179 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~---------e~k~~l~ 179 (312)
...+.-++..+-.++.||..|.+.|+.+.+...|...+. + .+..++-.++..|..+|+ +.-+.|+
T Consensus 165 ~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk-----~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia 238 (461)
T KOG4199|consen 165 LLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGK-----T-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIA 238 (461)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCc-----c-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHH
Confidence 446777888888899999999999999999988865432 2 244444444444433232 1123455
Q ss_pred CCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCCh---HHHHHHHHHHHHhhc
Q 021419 180 SASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICP---TATEASFVVVYHMIT 255 (312)
Q Consensus 180 ~~~~l~~lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~---~a~~~Al~aL~~L~~ 255 (312)
..+.+..++..|+.| ++..-..+...|..|+ ..++.+..|.+. |.+..|++++.+.+.. .+.|-+++.|..|.-
T Consensus 239 ~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA-Vr~E~C~~I~e~-GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG 316 (461)
T KOG4199|consen 239 KEGILTALTEALQAGIDPDSLVSLSTTLKALA-VRDEICKSIAES-GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG 316 (461)
T ss_pred HhhhHHHHHHHHHccCCccHHHHHHHHHHHHH-HHHHHHHHHHHc-cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC
Confidence 666899999999988 7778888999999995 667888888787 9999999999874232 367888999999998
Q ss_pred CCCCCcchHHHHHHcCcHHHHHHHhhh--cccchhhhhh
Q 021419 256 SASAADKPIQKFVDMGLVSLLLETLVD--AQRSLCEKPW 292 (312)
Q Consensus 256 ~~~~~~~Nr~~~V~~G~V~~LvelL~~--~~~~~~e~aL 292 (312)
++ .|+..+|+.|..+.++.++.. .++.+++.++
T Consensus 317 ~D----svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 317 SD----SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred CC----chHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 86 899999999999999999963 3566776666
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.38 E-value=5.9e-06 Score=84.75 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021419 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
+..+.+.-+.+ .++..+-.|...|..++..+..-|..+.+-|.|+.|+.+|... +.+|+..|..+|.+|
T Consensus 234 ~lpe~i~mL~~----q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-------~~evq~~acgaLRNL 302 (717)
T KOG1048|consen 234 TLPEVISMLMS----QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-------NDEVQRQACGALRNL 302 (717)
T ss_pred ccHHHHHHHhc----cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-------cHHHHHHHHHHHHhh
Confidence 44556666654 4667778899999999999999999999999999999999765 458999999999999
Q ss_pred CCCC--hhHHHhccCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCC------
Q 021419 168 FPLA--GEALTYLGSASSMHCMVWFLKS-GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPI------ 238 (312)
Q Consensus 168 ~~~~--~e~k~~l~~~~~l~~lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~------ 238 (312)
.... ++||-.|.+.+.++.++++|+. ++.+.|++.+.+|-+|++. |..|..|.. .+++.|-+-+-...
T Consensus 303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~ 379 (717)
T KOG1048|consen 303 VFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT--SALSTLTDNVIIPHSGWEEE 379 (717)
T ss_pred hcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH--HHHHHHHHhhcccccccCCC
Confidence 7544 4588889999999999999997 7999999999999999866 666666623 57777775543211
Q ss_pred -------ChHHHHHHHHHHHHhhcCCCCCcchHHHHHH-cCcHHHHHHHhh
Q 021419 239 -------CPTATEASFVVVYHMITSASAADKPIQKFVD-MGLVSLLLETLV 281 (312)
Q Consensus 239 -------~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~-~G~V~~LvelL~ 281 (312)
.......+.-+|.|+++-. .+.|.+|=+ .|.|..|+-.+.
T Consensus 380 ~~~~~~~~~~vf~n~tgcLRNlSs~~---~eaR~~mr~c~GLIdaL~~~iq 427 (717)
T KOG1048|consen 380 PAPRKAEDSTVFRNVTGCLRNLSSAG---QEAREQMRECDGLIDALLFSIQ 427 (717)
T ss_pred Ccccccccceeeehhhhhhccccchh---HHHHHHHhhccchHHHHHHHHH
Confidence 1346678899999998743 378899888 599999999886
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.32 E-value=1.9e-05 Score=72.78 Aligned_cols=160 Identities=10% Similarity=0.048 Sum_probs=121.3
Q ss_pred HhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 021419 130 VDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREV 209 (312)
Q Consensus 130 ~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~L 209 (312)
-+++-.+.|+.+|.... ++.++|.|+.+|.+.+ ....++..|.+.|.++.+..+|...+...|+.|..+|..+
T Consensus 9 l~~~~l~~Ll~lL~~t~------dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTE------DPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNL 81 (254)
T ss_pred cCHHHHHHHHHHHhcCC------ChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhc
Confidence 45566788999997653 2568999999999874 3578999999999999999999999999999999999999
Q ss_pred hccchHHHHHhhhhhchHHHHHHhhcC-CCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchh
Q 021419 210 ISSDHRRVNMFLEIEGAIESLYTLIKE-PICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLC 288 (312)
Q Consensus 210 s~~~~~~~~~Ig~~~g~i~~LV~ll~~-~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~ 288 (312)
+ .+.++...| + ..+..+.+.+.. .-+.....+++++|.||+... .++.. + +++++.++++|..++..+-
T Consensus 82 s-~~~en~~~I-k--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~----~~~~~-l-~~~i~~ll~LL~~G~~~~k 151 (254)
T PF04826_consen 82 S-VNDENQEQI-K--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN----DYHHM-L-ANYIPDLLSLLSSGSEKTK 151 (254)
T ss_pred C-CChhhHHHH-H--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc----chhhh-H-HhhHHHHHHHHHcCChHHH
Confidence 6 446667767 4 357777765433 334467788999999998774 44444 4 3589999999988766665
Q ss_pred hhhh-----ccCCHH-HHHHHhhc
Q 021419 289 EKPW-----VFSTDF-AAVITGEE 306 (312)
Q Consensus 289 e~aL-----L~~~~e-GR~ai~~~ 306 (312)
..+| |+.++. .|.-+...
T Consensus 152 ~~vLk~L~nLS~np~~~~~Ll~~q 175 (254)
T PF04826_consen 152 VQVLKVLVNLSENPDMTRELLSAQ 175 (254)
T ss_pred HHHHHHHHHhccCHHHHHHHHhcc
Confidence 5555 777776 45544443
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=2.7e-05 Score=84.22 Aligned_cols=191 Identities=15% Similarity=0.130 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhc----cc--ccccchhHHHHHHHHHHHHhcCCCChhHHHhccC-CC
Q 021419 110 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFES----FS--KTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS-AS 182 (312)
Q Consensus 110 ~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s----~~--~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~-~~ 182 (312)
.|+..|.++.-+ ++.|+.|.+-|++..+..+|.- .+ .++ ..+..++..|.-+|.||-..|..||..|-. .|
T Consensus 317 aA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd-~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 317 AALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETND-GECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 588888888874 4599999999999998887732 11 111 124556788888999998888889998864 89
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-HHHHHhhhhhchHHHHHHh-hcCCCChHHHHHHHHHHHHhhcCCCCC
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDH-RRVNMFLEIEGAIESLYTL-IKEPICPTATEASFVVVYHMITSASAA 260 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~-~~~~~Ig~~~g~i~~LV~l-l~~~~~~~a~~~Al~aL~~L~~~~~~~ 260 (312)
||+++|..|.+..-+--+=-+.+|.+||=-.+ ..++.+-+. |-+.+|+.. ++.. .....|+-|.+||||+-+-
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsVtaLa~~al~~~-kEsTLKavLSALWNLSAHc--- 469 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRET-GSVTALAACALRNK-KESTLKAVLSALWNLSAHC--- 469 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhh-hhHHHHHHHHHHhc-ccchHHHHHHHHhhhhhcc---
Confidence 99999999999887877888899999983323 456666444 877888866 3333 3357899999999997543
Q ss_pred cchHHHHHH-cCcHHHHHHHhh-hcc-c--chhhhhh---------ccCCHHHHHHHhhcC
Q 021419 261 DKPIQKFVD-MGLVSLLLETLV-DAQ-R--SLCEKPW---------VFSTDFAAVITGEER 307 (312)
Q Consensus 261 ~~Nr~~~V~-~G~V~~LvelL~-~~~-~--~~~e~aL---------L~~~~eGR~ai~~~~ 307 (312)
-+|+..+-. .|++..|+.+|. ++. + .+.|.+= ++.|+.=|+.+..|.
T Consensus 470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~N 530 (2195)
T KOG2122|consen 470 TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHN 530 (2195)
T ss_pred cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhh
Confidence 369988887 599999999996 321 1 2333322 788888888777664
No 20
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.15 E-value=3.8e-05 Score=72.65 Aligned_cols=193 Identities=12% Similarity=0.131 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 021419 87 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 166 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~ 166 (312)
.++..++.+|--. .|++....|.=.|.-++....+.-..+.+.|..+-|+.+|...+ ..++.-|++..-+
T Consensus 242 sqalpiL~KLiys---~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s-------a~iqtPalR~vGN 311 (526)
T COG5064 242 SQALPILAKLIYS---RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES-------AKIQTPALRSVGN 311 (526)
T ss_pred HHHHHHHHHHHhh---cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc-------ccccCHHHHhhcC
Confidence 3455556666432 46655555655555555444433345677899999999996542 3567788888888
Q ss_pred cCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchH-HHHHhhhhhchHHHHHHhhcCCCChHHHHH
Q 021419 167 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHR-RVNMFLEIEGAIESLYTLIKEPICPTATEA 245 (312)
Q Consensus 167 L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~-~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~ 245 (312)
+...++....+|.+-|+|+.+-.+|.+..-..|..|+=.|.++..-.-+ .+..| +. .+++.||+++..- .....|.
T Consensus 312 IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavi-d~-nliPpLi~lls~a-e~k~kKE 388 (526)
T COG5064 312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVI-DA-NLIPPLIHLLSSA-EYKIKKE 388 (526)
T ss_pred eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHH-hc-ccchHHHHHHHHH-HHHHHHH
Confidence 7666666666777899999999999988778999999999999744433 44445 77 8999999999765 5678888
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 246 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 246 Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
|-=++.|..+..-+++....-+|+.|++.+|-.+|.-.+..+.|-+|
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~L 435 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVAL 435 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhH
Confidence 98999999776433455677889999999999999766666666666
No 21
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00018 Score=74.19 Aligned_cols=198 Identities=13% Similarity=0.197 Sum_probs=149.9
Q ss_pred CCCCCCCChHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHH
Q 021419 78 AKLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVL 157 (312)
Q Consensus 78 ~tp~~p~~~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~ 157 (312)
..|+.+-..+.+..|+.+..++.. .+++..|++.|+.+++ ..|..+...|. +.|+.+|.... .+.++.
T Consensus 13 q~~k~~s~aETI~kLcDRvessTL---~eDRR~A~rgLKa~sr---kYR~~Vga~Gm-k~li~vL~~D~-----~D~E~i 80 (970)
T KOG0946|consen 13 QPPKQQSAAETIEKLCDRVESSTL---LEDRRDAVRGLKAFSR---KYREEVGAQGM-KPLIQVLQRDY-----MDPEII 80 (970)
T ss_pred CCCccccHHhHHHHHHHHHhhccc---hhhHHHHHHHHHHHHH---HHHHHHHHccc-HHHHHHHhhcc-----CCHHHH
Confidence 466666678899999999987653 3445789999999998 35656555565 66668885432 146788
Q ss_pred HHHHHHHHhcCCCCh------hHH-----------HhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-HHHHH
Q 021419 158 EEILSTLTLLFPLAG------EAL-----------TYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH-RRVNM 219 (312)
Q Consensus 158 e~Al~iL~~L~~~~~------e~k-----------~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~-~~~~~ 219 (312)
-.||.+++.+...++ +.+ ..|.+.+.|.+++.++..-+...|..|+.+|..|.+..+ +.+..
T Consensus 81 k~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ 160 (970)
T KOG0946|consen 81 KYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDA 160 (970)
T ss_pred HHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHH
Confidence 888988887765332 122 135578899999999999999999999999999987654 55666
Q ss_pred hhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHc-CcHHHHHHHhhhc---c-cchhhhhh
Q 021419 220 FLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLVDA---Q-RSLCEKPW 292 (312)
Q Consensus 220 Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~-G~V~~LvelL~~~---~-~~~~e~aL 292 (312)
|-..|-.|..||.+|+|. ....+.+|+-.|..|.-.. .+..++|.- .+..-|.+++.+. + .-|+|.+|
T Consensus 161 ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n----~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL 233 (970)
T KOG0946|consen 161 LLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDN----SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCL 233 (970)
T ss_pred HHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccC----chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 657778999999999987 4457788999999998765 689999985 6889999999643 2 24778887
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=4.6e-05 Score=74.87 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc
Q 021419 156 VLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK 235 (312)
Q Consensus 156 v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~ 235 (312)
++..|+..|.+|+. +-.....+.....+.-+|+.|...+.+--......|..||-. ++++..++.. |.++.|+++..
T Consensus 279 LLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~-~iveKL~klfp 355 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQN-GIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhc-cHHHHHHHhcC
Confidence 44557777888754 211111234566788899999888888888888899999755 6789999665 99999999997
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhc-ccchhhhhh-ccCCHH
Q 021419 236 EPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA-QRSLCEKPW-VFSTDF 298 (312)
Q Consensus 236 ~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~-~~~~~e~aL-L~~~~e 298 (312)
-. +|..++..++.|+|++-.. .+|.+||..|.+|.|..+|.+. ..+++-..| ..+|.+
T Consensus 356 ~~-h~dL~~~tl~LlfNlSFD~----glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD 415 (791)
T KOG1222|consen 356 IQ-HPDLRKATLMLLFNLSFDS----GLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDD 415 (791)
T ss_pred CC-CHHHHHHHHHHhhhccccc----cccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCc
Confidence 66 8899999999999999774 7999999999999999999753 446666666 444444
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00012 Score=71.98 Aligned_cols=208 Identities=15% Similarity=0.175 Sum_probs=142.6
Q ss_pred cchhh-hhhhchhhhhccccCC-CCCCCCCChHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCC
Q 021419 57 NTSLL-YQQTKFNLQREKSEGY-AKLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGA 134 (312)
Q Consensus 57 N~tLr-Iq~Wc~~~~~n~~~gv-~tp~~p~~~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~ 134 (312)
.|-|| .+-|-..+- .+...+ +.|+.-.-++++..+-+++....+ ..++-..-|+.-+-.+|.+-. --..++.-..
T Consensus 229 dhElkRye~w~~El~-k~krs~de~p~netLk~e~dr~~kklk~~~~-KQeqLLrva~ylLlNlAed~~-~ElKMrrkni 305 (791)
T KOG1222|consen 229 DHELKRYEFWIAELK-KTKRSTDEKPKNETLKEEIDRLNKKLKTAIR-KQEQLLRVAVYLLLNLAEDIS-VELKMRRKNI 305 (791)
T ss_pred HHHHHHHHHHHHHHh-hhhcccccCcchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhh-HHHHHHHHhH
Confidence 45666 666654111 111122 244443335667777777754321 111122236677777776432 2234566678
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Q 021419 135 VSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH 214 (312)
Q Consensus 135 v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~ 214 (312)
|..||..|... +.++.-..+.-|..| +.-.+||..++.-+.+..++++....+.+-+.....+|+++|-++.
T Consensus 306 V~mLVKaLdr~-------n~~Ll~lv~~FLkKL-SIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g 377 (791)
T KOG1222|consen 306 VAMLVKALDRS-------NSSLLTLVIKFLKKL-SIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG 377 (791)
T ss_pred HHHHHHHHccc-------chHHHHHHHHHHHHh-hhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc
Confidence 88999999654 345666666777766 3357899999999999999999999999999999999999975544
Q ss_pred HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcc
Q 021419 215 RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQ 284 (312)
Q Consensus 215 ~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~ 284 (312)
-....+ .. |.+|.|+.+|.++. -..-|+..||+++... +-+.-+.-..+|+.|.+.+..+.
T Consensus 378 lr~KMv-~~-GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD----~~K~MfayTdci~~lmk~v~~~~ 438 (791)
T KOG1222|consen 378 LRPKMV-NG-GLLPHLASLLDSDT---KHGIALNMLYHLSCDD----DAKAMFAYTDCIKLLMKDVLSGT 438 (791)
T ss_pred ccHHHh-hc-cchHHHHHHhCCcc---cchhhhhhhhhhccCc----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 333445 66 99999999997662 2334899999999885 78888999999999999887653
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.67 E-value=0.0028 Score=64.00 Aligned_cols=163 Identities=13% Similarity=0.131 Sum_probs=123.4
Q ss_pred hcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 021419 131 DYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 210 (312)
Q Consensus 131 ~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls 210 (312)
..++.+.|...|... +..|++.++..|..+...++.....+.+.+.++.++..|..++.+....|+.+|..|+
T Consensus 75 ~~~~~~~L~~gL~h~-------~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHP-------SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred HHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 345677777777644 3578999999888775444444556778999999999999999999999999999998
Q ss_pred ccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhh
Q 021419 211 SSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEK 290 (312)
Q Consensus 211 ~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~ 290 (312)
...+... .+-.. +.+..|..++... +...+-....++.+++... +......+..|.++.++..|.+.|--+...
T Consensus 148 ~~~~~~~-~l~~~-~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S---~~~~~~~~~sgll~~ll~eL~~dDiLvqln 221 (503)
T PF10508_consen 148 SHPEGLE-QLFDS-NLLSKLKSLMSQS-SDIVRCRVYELLVEIASHS---PEAAEAVVNSGLLDLLLKELDSDDILVQLN 221 (503)
T ss_pred CCchhHH-HHhCc-chHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcC---HHHHHHHHhccHHHHHHHHhcCccHHHHHH
Confidence 6644443 34354 6699999998764 4456666889999998765 367777777899999999998755434444
Q ss_pred hh-----ccCCHHHHHHHhhc
Q 021419 291 PW-----VFSTDFAAVITGEE 306 (312)
Q Consensus 291 aL-----L~~~~eGR~ai~~~ 306 (312)
++ |+.+..|..-+.+.
T Consensus 222 alell~~La~~~~g~~yL~~~ 242 (503)
T PF10508_consen 222 ALELLSELAETPHGLQYLEQQ 242 (503)
T ss_pred HHHHHHHHHcChhHHHHHHhC
Confidence 44 88889998877664
No 25
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.63 E-value=0.00028 Score=76.66 Aligned_cols=193 Identities=11% Similarity=0.049 Sum_probs=139.3
Q ss_pred HHHHHHHHHHhchhhhHHHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhHHHhccCCCCHHHHH
Q 021419 111 LVAKIKKWIKESERNKRCIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEALTYLGSASSMHCMV 188 (312)
Q Consensus 111 al~~l~~lak~s~~nR~~l~~a-G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~-~~~e~k~~l~~~~~l~~lv 188 (312)
+...|-+|+..+..||..|+.. |+.+++|.-|.+.. .+++...-.+|.||+= .|-..|++|-+.|.+-+|+
T Consensus 371 a~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-------eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa 443 (2195)
T KOG2122|consen 371 AGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-------EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALA 443 (2195)
T ss_pred HHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-------HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHH
Confidence 4455566667788899999987 99999999997652 2455555568888852 3344577888888777777
Q ss_pred HH-HhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC---CChHHHHHHHHHHHHhhcCCCCCcchH
Q 021419 189 WF-LKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP---ICPTATEASFVVVYHMITSASAADKPI 264 (312)
Q Consensus 189 ~~-L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~---~~~~a~~~Al~aL~~L~~~~~~~~~Nr 264 (312)
.. |++..-..-..-..+|-+|+...-+||..|..++|++..||.+|.-. +....++.|--+|.|++++--.++.-|
T Consensus 444 ~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yR 523 (2195)
T KOG2122|consen 444 ACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYR 523 (2195)
T ss_pred HHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHH
Confidence 64 55544333345667888998777789999999999999999999732 344677788888999865432234678
Q ss_pred HHHHHcCcHHHHHHHhhhcccchhhhhh------ccCCHHHHHHHhhcCCcc
Q 021419 265 QKFVDMGLVSLLLETLVDAQRSLCEKPW------VFSTDFAAVITGEERPTI 310 (312)
Q Consensus 265 ~~~V~~G~V~~LvelL~~~~~~~~e~aL------L~~~~eGR~ai~~~~~~~ 310 (312)
.-+-+..++..|+++|...+=.++-.++ -+.+++-.+.+.+++...
T Consensus 524 QILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~ 575 (2195)
T KOG2122|consen 524 QILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVP 575 (2195)
T ss_pred HHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHH
Confidence 8888999999999999865422333333 577888888888876543
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.58 E-value=0.0031 Score=61.62 Aligned_cols=177 Identities=11% Similarity=0.095 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhc-ccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHH
Q 021419 110 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFES-FSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMV 188 (312)
Q Consensus 110 ~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s-~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv 188 (312)
+..-+|-.-+.+++.-+-.++++|.++-+..++.. ....+-.......-.+-.....|..+|+.-..+...|.+++.++
T Consensus 242 eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~ 321 (604)
T KOG4500|consen 242 EMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLE 321 (604)
T ss_pred hHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHH
Confidence 34456666677788888889999999999999965 21100000111122222333333234444455566788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC--C--CChHHHHHHHHHHHHhhcCCCCCcchH
Q 021419 189 WFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE--P--ICPTATEASFVVVYHMITSASAADKPI 264 (312)
Q Consensus 189 ~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~--~--~~~~a~~~Al~aL~~L~~~~~~~~~Nr 264 (312)
.-+++.+......++.+|-+++..++.+...+ +. |++..|+.+|-. + .+-+...+++.+|.|+.... .||
T Consensus 322 sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v-~~-~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv----~nk 395 (604)
T KOG4500|consen 322 SWFRSDDSNLITMGSLAIGNFARRDDICIQLV-QK-DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV----SNK 395 (604)
T ss_pred HHhcCCchhHHHHHHHHHHhhhccchHHHHHH-HH-HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC----Cch
Confidence 99999998888889999999976644444455 65 999999998752 1 25678899999999998765 799
Q ss_pred HHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 265 QKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 265 ~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
..++.+|++++++..|.-..+.++-|-+
T Consensus 396 a~~~~aGvteaIL~~lk~~~ppv~fkll 423 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLASPPVTFKLL 423 (604)
T ss_pred hhccccchHHHHHHHHHhcCCcchHHHH
Confidence 9999999999999999765555555544
No 27
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.0029 Score=60.09 Aligned_cols=167 Identities=12% Similarity=0.155 Sum_probs=122.7
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCC
Q 021419 104 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 183 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~ 183 (312)
|+....++...|..+|-.++ -.+.+++.|.+..|++++.+.++ +.+.++...+++.|..|+ .++++|..|++.|.
T Consensus 255 dp~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~---~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg 329 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNE---QGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGG 329 (461)
T ss_pred CccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhch---hhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcC
Confidence 45555567778888888776 45568999999999999977543 235667788899999884 46789999999999
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC-CCChHHHHHHHHHHHHhhcCCCCC
Q 021419 184 MHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE-PICPTATEASFVVVYHMITSASAA 260 (312)
Q Consensus 184 l~~lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~-~~~~~a~~~Al~aL~~L~~~~~~~ 260 (312)
++.|+.++-.- ++-.=+.+++++..|+--++++-..+-+. |+-...|+-++- +...+..+.|-..+.|+....
T Consensus 330 ~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~-G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs--- 405 (461)
T KOG4199|consen 330 LDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEA-GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS--- 405 (461)
T ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhc-chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh---
Confidence 99999876543 56666777777777775556554444376 777777777763 344577899999999998654
Q ss_pred cchHHHHHHcCcHHHHHHHh
Q 021419 261 DKPIQKFVDMGLVSLLLETL 280 (312)
Q Consensus 261 ~~Nr~~~V~~G~V~~LvelL 280 (312)
..||..+...|+ +.|+..-
T Consensus 406 ~~~~~~~l~~Gi-E~Li~~A 424 (461)
T KOG4199|consen 406 AENRTILLANGI-EKLIRTA 424 (461)
T ss_pred hhccchHHhccH-HHHHHHH
Confidence 368888888875 4444444
No 28
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.57 E-value=7.7e-06 Score=58.10 Aligned_cols=45 Identities=7% Similarity=-0.121 Sum_probs=30.7
Q ss_pred CCcccchhhhhhHHHhhhhccc--chhhHHhhHHH-Hh--hCCCcccccc
Q 021419 2 PGKRHVRLINLAKWLVESAWVA--LRLFQERCEEE-LL--WAAEMIKIKA 46 (312)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~er~~~e-~~--~G~~TCP~T~ 46 (312)
-|...++-||+|++.++|||.. -+++|||.+|. +. .+...||+++
T Consensus 6 ~~~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 6 EGGTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SSB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 4667789999999999999987 58999999877 44 5788999986
No 29
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.48 E-value=0.0022 Score=60.66 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=120.2
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021419 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
...+++.+. ++|..-+..|..-+..+...++....... .++++.++..|.+... ..+.+++..++..|..|.
T Consensus 107 ~~~fl~ll~----~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~---~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 107 YSPFLKLLD----RNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLS---SSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp HHHHHHH-S-----SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT----HHHH---HHHHHHHHHHH
T ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhc---CCCcchHHHHHHHHHHHh
Confidence 344555332 35777777888888888876664333322 4567778788765321 113456788888888874
Q ss_pred CCChhHHHhccCCCCHHHHHHHH-----hcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChH
Q 021419 169 PLAGEALTYLGSASSMHCMVWFL-----KSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPT 241 (312)
Q Consensus 169 ~~~~e~k~~l~~~~~l~~lv~~L-----~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~ 241 (312)
. .++.|..+.+.+.++.+..+| .++ +....-++..++--| +.+++....+-.. ++|+.|++++++.....
T Consensus 179 ~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~~~~~~~-~~i~~L~~i~~~~~KEK 255 (312)
T PF03224_consen 179 R-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL-SFEPEIAEELNKK-YLIPLLADILKDSIKEK 255 (312)
T ss_dssp T-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-TTSHHHHHHHHTT-SHHHHHHHHHHH--SHH
T ss_pred C-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH-hcCHHHHHHHhcc-chHHHHHHHHHhcccch
Confidence 3 678888888899999999999 233 445555666666666 5667777777454 79999999999876778
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhh
Q 021419 242 ATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 242 a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~ 281 (312)
.++-++.+|.|++.... +.+...|+..|..+.|-.+..
T Consensus 256 vvRv~la~l~Nl~~~~~--~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 256 VVRVSLAILRNLLSKAP--KSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSSSS--TTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccH--HHHHHHHHHccHHHHHHHHhc
Confidence 99999999999987641 129999999988777666654
No 30
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.011 Score=56.45 Aligned_cols=178 Identities=10% Similarity=0.167 Sum_probs=130.3
Q ss_pred CCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCC
Q 021419 102 SEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSA 181 (312)
Q Consensus 102 ~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~ 181 (312)
+.|.+++..|+..|..++..=+ |=.-|+..|+...|+..|.+. +..+++.|..++...+..+......+.+.
T Consensus 94 s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~-------~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENS-------DAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCC-------cHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 3577888899999999998666 777889998877777877654 35789999999988766667777777788
Q ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHHhccch-HHHHHhhhhhchHHHHHHhhcCC-CChHHHHHHHHHHHHhhcCCC
Q 021419 182 SSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDH-RRVNMFLEIEGAIESLYTLIKEP-ICPTATEASFVVVYHMITSAS 258 (312)
Q Consensus 182 ~~l~~lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~-~~~~~Ig~~~g~i~~LV~ll~~~-~~~~a~~~Al~aL~~L~~~~~ 258 (312)
++++.++..|.+. +.++|..|.-++.+|..-.+ ...... ..+| +..|.+++.++ .+.+....|+..+-.|....
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl-~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~- 242 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL-KLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQED- 242 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH-hcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-
Confidence 8999999999865 67888999999998875543 223333 5534 89999999874 57788888888888886543
Q ss_pred CCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 259 AADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 259 ~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
..++.-+-..|....+..+....+-.+-|.++
T Consensus 243 --~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l 274 (342)
T KOG2160|consen 243 --KSDEDIASSLGFQRVLENLISSLDFEVNEAAL 274 (342)
T ss_pred --hhhhhHHHHhhhhHHHHHHhhccchhhhHHHH
Confidence 23445555567777766666544333334433
No 31
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.30 E-value=0.0019 Score=66.78 Aligned_cols=151 Identities=12% Similarity=0.055 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccc--hHHHHHhhhhhchHHHHH
Q 021419 154 VSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD--HRRVNMFLEIEGAIESLY 231 (312)
Q Consensus 154 ~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~--~~~~~~Ig~~~g~i~~LV 231 (312)
..++-+|-+-|..++..+.+.|..+.+-+.|+.+|.+|.+...+.+.+|+..|.+|+-.+ ++++..|-+. +.++.|+
T Consensus 247 ~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~-~Gv~~l~ 325 (717)
T KOG1048|consen 247 PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL-NGVPTLV 325 (717)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc-CChHHHH
Confidence 356888888888887778888887778899999999999999999999999999998443 3589999554 8899999
Q ss_pred HhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh---c-ccc-------------hhhhhh--
Q 021419 232 TLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD---A-QRS-------------LCEKPW-- 292 (312)
Q Consensus 232 ~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~---~-~~~-------------~~e~aL-- 292 (312)
.+|+.-.+....+...-+|+||++++ .-+.. +-.-+++.|-+.+.. + +.+ .+--+|
T Consensus 326 ~~Lr~t~D~ev~e~iTg~LWNLSS~D----~lK~~-ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRN 400 (717)
T KOG1048|consen 326 RLLRHTQDDEVRELITGILWNLSSND----ALKML-IITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRN 400 (717)
T ss_pred HHHHhhcchHHHHHHHHHHhcccchh----HHHHH-HHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhcc
Confidence 99996446688888999999999984 33344 334467777766631 1 111 111222
Q ss_pred c-cCCHHHHHHHhhcCCcc
Q 021419 293 V-FSTDFAAVITGEERPTI 310 (312)
Q Consensus 293 L-~~~~eGR~ai~~~~~~~ 310 (312)
+ ....|||+++.+..|.|
T Consensus 401 lSs~~~eaR~~mr~c~GLI 419 (717)
T KOG1048|consen 401 LSSAGQEAREQMRECDGLI 419 (717)
T ss_pred ccchhHHHHHHHhhccchH
Confidence 4 44789999999988876
No 32
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00026 Score=64.18 Aligned_cols=57 Identities=11% Similarity=-0.031 Sum_probs=48.6
Q ss_pred hhhhHHHhhhhccc-chhhHHhhHHHH---hhCCCcccccccccCCCCccccchhh--hhhhch
Q 021419 10 INLAKWLVESAWVA-LRLFQERCEEEL---LWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~er~~~e~---~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+.+|-.||++|++. +++||||..|+- .-|| -=|+|.-+|+...++||++|+ |..+..
T Consensus 214 gkIt~el~~~pvi~psgIty~ra~I~Ehl~rvgh-fdpvtr~~Lte~q~ipN~alkevIa~fl~ 276 (284)
T KOG4642|consen 214 GKITLELMREPVITPSGITYDRADIEEHLQRVGH-FDPVTRWPLTEYQLIPNLALKEVIAAFLK 276 (284)
T ss_pred hhhhHHhhcCCccCccccchhHHHHHHHHHHhcc-CCchhcccCCHHhhccchHHHHHHHHHHH
Confidence 46888999999966 999999999883 3364 459999999999999999999 887765
No 33
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.12 E-value=0.0086 Score=58.61 Aligned_cols=186 Identities=8% Similarity=0.074 Sum_probs=128.7
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021419 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
..+.+++.-++ .|.+.-.+.-+.+-.++.++.+||..+-+.|...+++++|++....+...+.+....+..+|.+-.
T Consensus 88 ~le~Lrq~psS---~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 88 ALELLRQTPSS---PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHhCCCC---CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 34445555332 455556678889999999999999999999998999999976532221234566666777888765
Q ss_pred CCChhHHHhccCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCCChHHHHH
Q 021419 169 PLAGEALTYLGSASSMHCMVWFLKSG--DLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPICPTATEA 245 (312)
Q Consensus 169 ~~~~e~k~~l~~~~~l~~lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~-~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~ 245 (312)
..+++.+.-+++.|.++.++..+--| +.+--+.-..-.+.|.+.- +.....-.+. .+...|++++...+.+...+.
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~-sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDC-SLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccc-hHHHHHHHHHHHhhccchhhH
Confidence 55577777788999999988887655 3332233333333333221 1122222233 677888899877666777888
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh
Q 021419 246 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD 282 (312)
Q Consensus 246 Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~ 282 (312)
...+|.....++ .-+..++++|.+.-+++++..
T Consensus 244 ~feila~~aend----~Vkl~la~~gl~e~~~~lv~~ 276 (604)
T KOG4500|consen 244 IFEILAKAAEND----LVKLSLAQNGLLEDSIDLVRN 276 (604)
T ss_pred HHHHHHHHhcCc----ceeeehhhcchHHHHHHHHHh
Confidence 888888888775 789999999999999999964
No 34
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.009 Score=62.45 Aligned_cols=188 Identities=10% Similarity=0.115 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchh-hhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 021419 87 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESER-NKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 165 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~-nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~ 165 (312)
.++.+|+..+.+. +|+..|++|+.++-.+-.-..+ .=.-+--.-++|+|+.+|+... +.++.-.|.++|.
T Consensus 167 Sk~kkLL~gL~~~---~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~------n~DIMl~AcRalt 237 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAE---SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH------NFDIMLLACRALT 237 (1051)
T ss_pred HHHHHHHHhcccc---CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc------cHHHHHHHHHHHH
Confidence 3677788888654 5888899999988776653322 1111222248999999996542 5678888888888
Q ss_pred hcCCCChhHHHhccCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHH
Q 021419 166 LLFPLAGEALTYLGSASSMHCMVWFLKS-GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATE 244 (312)
Q Consensus 166 ~L~~~~~e~k~~l~~~~~l~~lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~ 244 (312)
.|+.--.++-.++++.++||.+..=|.. .=++.-+++..+|+.||... .+..+ ++ |++-..+..+. =-+..+.+
T Consensus 238 yl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL-~A-G~l~a~LsylD-FFSi~aQR 312 (1051)
T KOG0168|consen 238 YLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAIL-QA-GALSAVLSYLD-FFSIHAQR 312 (1051)
T ss_pred HHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHH-hc-ccHHHHHHHHH-HHHHHHHH
Confidence 8864335666677889999999886654 34567788999999997553 35556 77 88888777763 22456889
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 245 ASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 245 ~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
.|+.+.-|.|..-. .+-=.-++ .+||.|-.+|...++...|.+.
T Consensus 313 ~AlaiaaN~Cksi~--sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ 356 (1051)
T KOG0168|consen 313 VALAIAANCCKSIR--SDEFHFVM--EALPLLTPLLSYQDKKPIESVC 356 (1051)
T ss_pred HHHHHHHHHHhcCC--CccchHHH--HHHHHHHHHHhhccchhHHHHH
Confidence 99999999996421 11222233 3789999999887888888877
No 35
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.95 E-value=0.0015 Score=42.75 Aligned_cols=40 Identities=33% Similarity=0.308 Sum_probs=34.7
Q ss_pred chhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021419 122 SERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 122 s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
++.||..+.++|++|.|+.+|.+. +.+++++|+.+|.+|+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-------~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-------DPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-------SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 467999999999999999999854 4689999999999873
No 36
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.94 E-value=0.01 Score=56.18 Aligned_cols=186 Identities=14% Similarity=0.130 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhchhhhHHHHhc---CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccC------C
Q 021419 111 LVAKIKKWIKESERNKRCIVDY---GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS------A 181 (312)
Q Consensus 111 al~~l~~lak~s~~nR~~l~~a---G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~------~ 181 (312)
-+..|+.+-+.+..+|.-+.+. +.+..++++|...+. +.++...++..+.-|...+.+....+.. .
T Consensus 30 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~-----~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~ 104 (312)
T PF03224_consen 30 DLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSS-----NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDS 104 (312)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHHH--------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccC-----cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 3445555655555555544443 468888898865411 3567888888887775544443333221 2
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCC---hHHHHHHHHHHHHhhcCCC
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPIC---PTATEASFVVVYHMITSAS 258 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~---~~a~~~Al~aL~~L~~~~~ 258 (312)
....++..+|.+++.-.+..|+.+|-.|....+...... . .++++.+++.+++..+ ......|+.+|-+|...+
T Consensus 105 ~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~- 181 (312)
T PF03224_consen 105 DPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-V-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK- 181 (312)
T ss_dssp --HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-H-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-H-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-
Confidence 368888899999999999999999999986654322221 1 3678888888876422 234488999999999886
Q ss_pred CCcchHHHHHHcCcHHHHHHHhh-----hc--ccchhhhhh-----ccCCHHHHHHHhhcC
Q 021419 259 AADKPIQKFVDMGLVSLLLETLV-----DA--QRSLCEKPW-----VFSTDFAAVITGEER 307 (312)
Q Consensus 259 ~~~~Nr~~~V~~G~V~~LvelL~-----~~--~~~~~e~aL-----L~~~~eGR~ai~~~~ 307 (312)
+.|..+++.|.|+.|..+|. +. .....-.++ |+=.+++...+..+.
T Consensus 182 ---~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~ 239 (312)
T PF03224_consen 182 ---EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY 239 (312)
T ss_dssp ---HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS
T ss_pred ---hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc
Confidence 89999999999999999992 11 112222333 666778888877665
No 37
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.028 Score=53.67 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHh
Q 021419 154 VSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTL 233 (312)
Q Consensus 154 ~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~l 233 (312)
.+-.+.|+.-|..+.. +-+|-.-+.+-|.+..++.+|++++.+.|+.|+.+|-+.+.-++...+.+-+. |+++.|+.+
T Consensus 97 le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~-~~L~~Ll~~ 174 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL-GALSKLLKI 174 (342)
T ss_pred HHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc-ccHHHHHHH
Confidence 4456777777766633 33444456677888999999999999999999999999987777666666576 899999999
Q ss_pred hcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh--cccchhhhhh
Q 021419 234 IKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD--AQRSLCEKPW 292 (312)
Q Consensus 234 l~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~--~~~~~~e~aL 292 (312)
+....+..++..|+-++++|.... ..--.++-.++....|...|.+ .+....-|++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~---~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~ 232 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNN---KPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKAL 232 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcC---cHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHH
Confidence 986545567688888888888765 4677888888889999999976 3444444444
No 38
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.79 E-value=0.0021 Score=42.02 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=36.9
Q ss_pred ChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 021419 171 AGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 210 (312)
Q Consensus 171 ~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls 210 (312)
+++++..+.+.|+++.++.+|++++.+.+.+|+.+|.+|+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3578888889999999999999999999999999999986
No 39
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.77 E-value=0.032 Score=54.26 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=117.7
Q ss_pred HHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhc
Q 021419 114 KIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKS 193 (312)
Q Consensus 114 ~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~ 193 (312)
.+-.+-++.+.-|.-+.-.-+.+-+..++-+. +.+++-.+++++..+.. +.+.-..+.+-+.--.++..|..
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~-------~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~ 77 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD-------SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDR 77 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC-------cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcc
Confidence 44455555554444444433444444333222 25788889999987744 55555555454444455666655
Q ss_pred C--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcC
Q 021419 194 G--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMG 271 (312)
Q Consensus 194 g--s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G 271 (312)
. +..+|++|.+++..+...... ...+ . .|++..+|.+..+. +.+.+..|+.+|..++.. |-.-++++|
T Consensus 78 ~~~~~~ER~QALkliR~~l~~~~~-~~~~-~-~~vvralvaiae~~-~D~lr~~cletL~El~l~------~P~lv~~~g 147 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFLEIKKG-PKEI-P-RGVVRALVAIAEHE-DDRLRRICLETLCELALL------NPELVAECG 147 (371)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCC-cccC-C-HHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhh------CHHHHHHcC
Confidence 4 567999999999999765322 2234 3 38999999999775 668999999999999986 668888999
Q ss_pred cHHHHHHHhhhcccchhhhhh-----ccCCHHHHHHHhh
Q 021419 272 LVSLLLETLVDAQRSLCEKPW-----VFSTDFAAVITGE 305 (312)
Q Consensus 272 ~V~~LvelL~~~~~~~~e~aL-----L~~~~eGR~ai~~ 305 (312)
.+.+|++.+.|+.-...|..+ +.++++-|.-+..
T Consensus 148 G~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 148 GIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRP 186 (371)
T ss_pred CHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcC
Confidence 999999999986434555544 7777777765543
No 40
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.019 Score=59.66 Aligned_cols=167 Identities=16% Similarity=0.220 Sum_probs=124.1
Q ss_pred CchhhhHHHHHHHHHHHhch------hhh------H-----HHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 021419 104 DQTGGRDLVAKIKKWIKESE------RNK------R-----CIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 166 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~------~nR------~-----~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~ 166 (312)
|++...-++..+..+...++ ..+ . ++...+.|..|+.++..+ +..|+--++..|..
T Consensus 76 D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-------DF~VR~~aIqLlsa 148 (970)
T KOG0946|consen 76 DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-------DFHVRLYAIQLLSA 148 (970)
T ss_pred CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-------chhhhhHHHHHHHH
Confidence 44444446666666666553 222 1 233448889999998765 35678888887766
Q ss_pred cCC-CChhHHHh-ccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCC---hH
Q 021419 167 LFP-LAGEALTY-LGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPIC---PT 241 (312)
Q Consensus 167 L~~-~~~e~k~~-l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~---~~ 241 (312)
|.. -..+.+.. +..|..|..++.+|....-..|-.|..+|.+|+..+.....++ .-+.+|+-|..++++..+ --
T Consensus 149 lls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlV-AFENaFerLfsIIeeEGg~dGgI 227 (970)
T KOG0946|consen 149 LLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLV-AFENAFERLFSIIEEEGGLDGGI 227 (970)
T ss_pred HHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHH-HHHHHHHHHHHHHHhcCCCCCcc
Confidence 643 23566665 5679999999999988777789999999999987766666666 556899999999985422 24
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhh
Q 021419 242 ATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 242 a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~ 281 (312)
.+.+++..|.||...+ -.|-.-+-+.|.||-|.++|+
T Consensus 228 VveDCL~ll~NLLK~N---~SNQ~~FrE~~~i~rL~klL~ 264 (970)
T KOG0946|consen 228 VVEDCLILLNNLLKNN---ISNQNFFREGSYIPRLLKLLS 264 (970)
T ss_pred hHHHHHHHHHHHHhhC---cchhhHHhccccHHHHHhhcC
Confidence 6899999999998765 478899999999999999997
No 41
>PF05536 Neurochondrin: Neurochondrin
Probab=96.53 E-value=0.063 Score=54.87 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchh---hhHHHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHH
Q 021419 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESER---NKRCIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILST 163 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~---nR~~l~~a-G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~i 163 (312)
.+.+.++-|++. +..++..++--+.++.+.++. +|+.+-++ | .++|-++|.+...+........+.-|+++
T Consensus 6 ~l~~c~~lL~~~----~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 6 SLEKCLSLLKSA----DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHHhccC----CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 444555555442 335667788888899887774 34445666 6 59999999775321100124567889999
Q ss_pred HHhcCCCChhH---HHhccCCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCC
Q 021419 164 LTLLFPLAGEA---LTYLGSASSMHCMVWFLKSGDL-SRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPIC 239 (312)
Q Consensus 164 L~~L~~~~~e~---k~~l~~~~~l~~lv~~L~~gs~-~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~ 239 (312)
|..++. +++. .+++ +.||.++.++.+++. +.-..|..+|..+++. ++-...+.+. |.++.|+.++.+ +
T Consensus 81 L~~f~~-~~~~a~~~~~~---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~-g~v~~L~ei~~~--~ 152 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMV---SRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLES-GAVPALCEIIPN--Q 152 (543)
T ss_pred HHHHcC-ChhhhcCHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhc-CCHHHHHHHHHh--C
Confidence 999865 4332 2222 579999999988866 8889999999999855 4444445476 999999999977 4
Q ss_pred hHHHHHHHHHHHHhhcC
Q 021419 240 PTATEASFVVVYHMITS 256 (312)
Q Consensus 240 ~~a~~~Al~aL~~L~~~ 256 (312)
+...+.|+.+|.+++..
T Consensus 153 ~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSR 169 (543)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 57889999999999765
No 42
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.51 E-value=0.016 Score=43.53 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=64.3
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Q 021419 135 VSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH 214 (312)
Q Consensus 135 v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~ 214 (312)
+|.|+..|.... +..++..|+.+|..+ . ++..++.++++|++.+...|..|+..|..+
T Consensus 1 i~~L~~~l~~~~------~~~vr~~a~~~L~~~---~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----- 58 (88)
T PF13646_consen 1 IPALLQLLQNDP------DPQVRAEAARALGEL---G--------DPEAIPALIELLKDEDPMVRRAAARALGRI----- 58 (88)
T ss_dssp HHHHHHHHHTSS------SHHHHHHHHHHHHCC---T--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHhcCC------CHHHHHHHHHHHHHc---C--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-----
Confidence 578888884331 467888999888854 1 124699999999999999999999888865
Q ss_pred HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHH
Q 021419 215 RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVV 250 (312)
Q Consensus 215 ~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL 250 (312)
|. +.+++.|.+++.++.+...+..|..+|
T Consensus 59 ------~~-~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 59 ------GD-PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ------HH-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred ------CC-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 33 368899999998764545567677665
No 43
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.18 E-value=0.006 Score=59.29 Aligned_cols=104 Identities=12% Similarity=0.058 Sum_probs=68.3
Q ss_pred hhhhhHHHhhhhccc--chhhHHhhHHH-HhhCCCcccccccccCCCCccccchhhhhhhchhhhhccccCCCCCCCCCC
Q 021419 9 LINLAKWLVESAWVA--LRLFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYAKLGIPMS 85 (312)
Q Consensus 9 ~~~~~~~~~~~~~~~--~~~~~er~~~e-~~~G~~TCP~T~Q~L~~~~l~PN~tLrIq~Wc~~~~~n~~~gv~tp~~p~~ 85 (312)
+|-+.-.+=++|||. +++.|||.=|| +...+.+||+|+|+|+-.+++|=.+ .++-.|++|..
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~---------------~~~v~pk~~sa 66 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKV---------------PAQVRPKPPSA 66 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccc---------------cccccCCCCCc
Confidence 566777788899998 88899999888 6888999999999998666665211 11123444311
Q ss_pred ------------------------hHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhc
Q 021419 86 ------------------------SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDY 132 (312)
Q Consensus 86 ------------------------~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~a 132 (312)
+.+....-++|+-+ ..+...|.+=|.+|.||-++.|+.+...
T Consensus 67 tSIPalL~~lQdEWDavML~~F~LRqqL~ttrQELSha-----LYqhDAAcrViaRL~kE~~eareaLa~~ 132 (506)
T KOG0289|consen 67 TSIPALLKTLQDEWDAVMLESFTLRQQLQTTRQELSHA-----LYQHDAACRVIARLTKERDEAREALAKL 132 (506)
T ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11222233333322 1233457788899999999899888653
No 44
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=95.91 E-value=0.16 Score=42.74 Aligned_cols=112 Identities=10% Similarity=0.126 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 021419 87 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 166 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~ 166 (312)
+.+..+|.+.... .+.+.+.+-+..|.++|-+ +.|=..+.+..+..+.+..|... +..+.|.++..|++
T Consensus 16 ~Ylq~LV~efq~t---t~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~-------ne~LvefgIgglCN 84 (173)
T KOG4646|consen 16 EYLQHLVDEFQTT---TNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQ-------NELLVEFGIGGLCN 84 (173)
T ss_pred HHHHHHHHHHHHh---ccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcc-------cHHHHHHhHHHHHh
Confidence 5567788877554 3455566788899999885 45888899999999988888654 45678999999999
Q ss_pred cCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 021419 167 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 210 (312)
Q Consensus 167 L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls 210 (312)
++. |..|++.|.+.+.++.++.+|.+..-..-..|+..+.-|+
T Consensus 85 lC~-d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 85 LCL-DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred hcc-ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 976 7788888989999999999997776666666777777664
No 45
>PF05536 Neurochondrin: Neurochondrin
Probab=95.88 E-value=0.095 Score=53.55 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=76.8
Q ss_pred CHHHHHHHHhcCC-------HHHHHHHHHHHHHHhccchHH---HHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHH
Q 021419 183 SMHCMVWFLKSGD-------LSRRRNTVLVLREVISSDHRR---VNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYH 252 (312)
Q Consensus 183 ~l~~lv~~L~~gs-------~~~r~~Aa~lL~~Ls~~~~~~---~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~ 252 (312)
..+.+-++|+.|+ ..-+.-|+.+|..++.. ++. ...+ +-||.|++++....+...+.+|+.+|+.
T Consensus 51 g~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~-~~~a~~~~~~----~~IP~Lle~l~~~s~~~~v~dalqcL~~ 125 (543)
T PF05536_consen 51 GFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD-PELASSPQMV----SRIPLLLEILSSSSDLETVDDALQCLLA 125 (543)
T ss_pred ChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC-hhhhcCHHHH----HHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 3466666677742 45667789999999764 432 3444 5589999999877334899999999999
Q ss_pred hhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 253 MITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 253 L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
++.++ +.+..+++.|+|+.|.+.+.+ .....|.++
T Consensus 126 Ias~~----~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 126 IASSP----EGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HHcCc----HhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 99886 899999999999999999987 444566666
No 46
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0047 Score=62.60 Aligned_cols=62 Identities=15% Similarity=0.003 Sum_probs=54.2
Q ss_pred cchhhhhhHHHhhhhccc--chhhHHhhHHH-HhhCCCcccccccccCCCCccccchhh--hhhhch
Q 021419 6 HVRLINLAKWLVESAWVA--LRLFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~--~~~~~er~~~e-~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+-||=||+=-+|+|||++ ++++.+|+.|- ..-...|-|....||.-.|.+||-+|| |..+..
T Consensus 853 DeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k 919 (929)
T COG5113 853 DEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYK 919 (929)
T ss_pred hhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHh
Confidence 568999999999999966 88999999887 344458999999999988999999999 998865
No 47
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=95.59 E-value=0.063 Score=45.05 Aligned_cols=114 Identities=9% Similarity=0.045 Sum_probs=89.5
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 021419 134 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 213 (312)
Q Consensus 134 ~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~ 213 (312)
.+..|++=+.... +.+..|.+++-|.+++- |.-|-..+..-+.++.++..|...+-.-.+.+...|++++.+
T Consensus 17 Ylq~LV~efq~tt------~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d- 88 (173)
T KOG4646|consen 17 YLQHLVDEFQTTT------NIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD- 88 (173)
T ss_pred HHHHHHHHHHHhc------cHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-
Confidence 4445555554321 46789999999999854 667777777889999999999998988999999999999744
Q ss_pred hHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCC
Q 021419 214 HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 214 ~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
..+++.|-++ +.++..+..+.+. ....+..|+.+|+.||...
T Consensus 89 ~~n~~~I~ea-~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 89 KTNAKFIREA-LGLPLIIFVLSSP-PEITVHSAALFLQLLEFGE 130 (173)
T ss_pred hHHHHHHHHh-cCCceEEeecCCC-hHHHHHHHHHHHHHhcCcc
Confidence 6677788566 7788888888766 4467888999999999873
No 48
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.45 E-value=0.035 Score=35.37 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=32.4
Q ss_pred HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 021419 215 RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 254 (312)
Q Consensus 215 ~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~ 254 (312)
+++..+.+. |+++.|+++++.+ ++..++.|..+|.||+
T Consensus 3 ~~~~~i~~~-g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDA-GGLPALVELLKSE-DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHC-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 356667565 9999999999866 8899999999999986
No 49
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.40 E-value=0.032 Score=35.59 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=34.6
Q ss_pred hHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 021419 173 EALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 210 (312)
Q Consensus 173 e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls 210 (312)
+++..+.+.|+++.++.+|++++.+.+.+|+.+|.+|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47777888999999999999999999999999999985
No 50
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.32 E-value=0.85 Score=41.93 Aligned_cols=145 Identities=12% Similarity=0.165 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhHHHhccCCCCHHHH
Q 021419 109 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEALTYLGSASSMHCM 187 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~-~~~e~k~~l~~~~~l~~l 187 (312)
-.|+.-++.+|.+.+ -|+.+..+-+--.|-.+|...+.. ......+-.+|.++..|.. ++.+-.+-+.+.+.++..
T Consensus 97 cnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~--r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 97 CNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKS--RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred HHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccC--CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 358888888888766 677777887776777777543211 1123455667777766643 445545556688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhccch------HHHHHhhhhhchHHHHH-HhhcCCCChHHHHHHHHHHHHhhcCC
Q 021419 188 VWFLKSGDLSRRRNTVLVLREVISSDH------RRVNMFLEIEGAIESLY-TLIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 188 v~~L~~gs~~~r~~Aa~lL~~Ls~~~~------~~~~~Ig~~~g~i~~LV-~ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
++.+.+|+-.+|.-|+-++..+...+. ...+......-.+..+| ++.+.+ +++..|.++++..+||..+
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999875543 12222222222344444 444445 9999999999999999874
No 51
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.14 E-value=0.56 Score=46.52 Aligned_cols=169 Identities=10% Similarity=0.058 Sum_probs=103.5
Q ss_pred CCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCC
Q 021419 103 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 182 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~ 182 (312)
+|..-...|..-+..+...+..+-.-....-+...|...|.+.. +...+.-++..|..|.. .++.|..+.+.+
T Consensus 113 ~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~------~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~ 185 (429)
T cd00256 113 QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNIT------NNDYVQTAARCLQMLLR-VDEYRFAFVLAD 185 (429)
T ss_pred CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccC------CcchHHHHHHHHHHHhC-CchHHHHHHHcc
Confidence 34445555666666665543321110000012234444444331 12456666677766533 467787777666
Q ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCC-
Q 021419 183 SMHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASA- 259 (312)
Q Consensus 183 ~l~~lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~- 259 (312)
.++.++.+|++. +....-++..++--|| .++...+.. ...++|+.|+++++...-...++-++.+|.||......
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~ 263 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLT-FNPHAAEVL-KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDR 263 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHh-ccHHHHHhh-ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Confidence 999999999874 3456666777777664 555556666 44599999999999765568999999999999874211
Q ss_pred --CcchHHHHHHcCcHHHHHHHh
Q 021419 260 --ADKPIQKFVDMGLVSLLLETL 280 (312)
Q Consensus 260 --~~~Nr~~~V~~G~V~~LvelL 280 (312)
++.....||+.|..+.+-.+.
T Consensus 264 ~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 264 EVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred chhhhHHHHHHHcChHHHHHHHh
Confidence 112456788888766444443
No 52
>PRK09687 putative lyase; Provisional
Probab=94.97 E-value=0.51 Score=44.13 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=24.2
Q ss_pred chHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcc
Q 021419 225 GAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQ 284 (312)
Q Consensus 225 g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~ 284 (312)
.+++.|+.++.|. ++..+..|+.+|-.+-.. -+|++|++.|.+..
T Consensus 192 ~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~~--------------~av~~Li~~L~~~~ 236 (280)
T PRK09687 192 DIREAFVAMLQDK-NEEIRIEAIIGLALRKDK--------------RVLSVLIKELKKGT 236 (280)
T ss_pred HHHHHHHHHhcCC-ChHHHHHHHHHHHccCCh--------------hHHHHHHHHHcCCc
Confidence 4555566666554 445555554444332111 27788888886543
No 53
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.85 E-value=0.21 Score=44.43 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=91.0
Q ss_pred CCchhhhHHHHHHHHHHHhc--hhhhHHHHhc--CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhc
Q 021419 103 EDQTGGRDLVAKIKKWIKES--ERNKRCIVDY--GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYL 178 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s--~~nR~~l~~a--G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l 178 (312)
.|=.++.+++.+|+.+.+.+ ..+...+.+. .++..+...+.+. ...+...|+.++..|+. ..+.-+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-------Rs~v~~~A~~~l~~l~~---~l~~~~ 88 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-------RSKVSKTACQLLSDLAR---QLGSHF 88 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----------HHHHHHHHHHHHHH---HHGGGG
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-------HHHHHHHHHHHHHHHHH---HHhHhH
Confidence 34467788999999999988 3334443332 4555666655433 23577778777776642 112222
Q ss_pred c--CCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhch-HHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 179 G--SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGA-IESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 179 ~--~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~-i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
. -...++.++..+.++..-.+..|..+|..+....+ . . ..+ +..+.....+. +|..+..++..|..+..
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~-~-~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----Y-S-PKILLEILSQGLKSK-NPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H----HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----c-H-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 2 13478889898888888899999999999864312 0 1 133 45555556555 89999999999999876
Q ss_pred CCCCCcchHHHHHH----cCcHHHHHHHhhhcccchhh
Q 021419 256 SASAADKPIQKFVD----MGLVSLLLETLVDAQRSLCE 289 (312)
Q Consensus 256 ~~~~~~~Nr~~~V~----~G~V~~LvelL~~~~~~~~e 289 (312)
.. +.+...+-. ...++.+...|.|.+..+-+
T Consensus 161 ~~---~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~ 195 (228)
T PF12348_consen 161 KW---GSDSSVLQKSAFLKQLVKALVKLLSDADPEVRE 195 (228)
T ss_dssp T--------GGG--HHHHHHHHHHHHHHHTSS-HHHHH
T ss_pred Hc---cchHhhhcccchHHHHHHHHHHHCCCCCHHHHH
Confidence 53 111111111 23677777777776544433
No 54
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.012 Score=62.56 Aligned_cols=62 Identities=19% Similarity=0.027 Sum_probs=54.0
Q ss_pred cchhhhhhHHHhhhhccc--chhhHHhhHHHH-hhCCCcccccccccCCCCccccchhh--hhhhch
Q 021419 6 HVRLINLAKWLVESAWVA--LRLFQERCEEEL-LWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~--~~~~~er~~~e~-~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+-|+=|++--+|.|||+. +++|-+|+.|+- .---.|=|.-.++|....++||-+|| |+.|..
T Consensus 869 def~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ 935 (943)
T KOG2042|consen 869 DEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIK 935 (943)
T ss_pred hhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHH
Confidence 457889999999999966 889999999993 33447779999999999999999999 999976
No 55
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.1 Score=54.93 Aligned_cols=119 Identities=15% Similarity=0.152 Sum_probs=81.9
Q ss_pred CHHHHHHHHhcC-CHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCC
Q 021419 183 SMHCMVWFLKSG-DLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAA 260 (312)
Q Consensus 183 ~l~~lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~-~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~ 260 (312)
-+..|+.=|+.. +...+..|+.=|.++.... ++....+ -.+-+++.||.+|++..++...-.|.+||++||..-
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~f-pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl--- 243 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGF-PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL--- 243 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc---
Confidence 444444445444 4555556666666654443 3444444 455699999999998888999999999999999654
Q ss_pred cchHHHHHHcCcHHHHHHHhhhccc-chhhhhh----ccCCHHHHHHHhh
Q 021419 261 DKPIQKFVDMGLVSLLLETLVDAQR-SLCEKPW----VFSTDFAAVITGE 305 (312)
Q Consensus 261 ~~Nr~~~V~~G~V~~LvelL~~~~~-~~~e~aL----L~~~~eGR~ai~~ 305 (312)
++-..-+|+.|+||+|++.|..-+- .++|.+| .-+-..+++-+..
T Consensus 244 P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A 293 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA 293 (1051)
T ss_pred cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc
Confidence 3778889999999999999975432 4788877 2222455554443
No 56
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=94.41 E-value=0.36 Score=48.13 Aligned_cols=124 Identities=12% Similarity=-0.015 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHhccchHHH-HHhhhhhch
Q 021419 153 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG-----DLSRRRNTVLVLREVISSDHRRV-NMFLEIEGA 226 (312)
Q Consensus 153 ~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~g-----s~~~r~~Aa~lL~~Ls~~~~~~~-~~Ig~~~g~ 226 (312)
+..+..+|+..|+|....++..+....+.+..+.++..|+.. +.+...-..++||=++....+.. ..+ ...++
T Consensus 45 ~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~-~e~~~ 123 (446)
T PF10165_consen 45 DPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLI-EEHHG 123 (446)
T ss_pred ChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHH-HHhhh
Confidence 467899999999998777788888888889999999999988 78899999999998876554433 344 44466
Q ss_pred HHHHHHhhcC-------C---------CChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhh
Q 021419 227 IESLYTLIKE-------P---------ICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 227 i~~LV~ll~~-------~---------~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~ 281 (312)
+..++..|.. . .+..+.-.++++|||+..+. .....--..+.++.|+.+|.
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~----~~~~~~~~~~~~~~l~~il~ 190 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY----PKSVPEEFSPSIPHLVSILR 190 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc----CcccchhhhHHHHHHHHHHH
Confidence 6666654431 1 13356778999999996543 11111233455666666554
No 57
>PRK09687 putative lyase; Provisional
Probab=94.39 E-value=0.73 Score=43.07 Aligned_cols=114 Identities=12% Similarity=0.041 Sum_probs=75.6
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 021419 134 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 213 (312)
Q Consensus 134 ~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~ 213 (312)
+++.|+.+|... +..++..|+..|-.+.. .++..++.|+..|...+.+.|..|+..|-.+
T Consensus 160 ai~~L~~~L~d~-------~~~VR~~A~~aLg~~~~---------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---- 219 (280)
T PRK09687 160 AIPLLINLLKDP-------NGDVRNWAAFALNSNKY---------DNPDIREAFVAMLQDKNEEIRIEAIIGLALR---- 219 (280)
T ss_pred HHHHHHHHhcCC-------CHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc----
Confidence 567777777543 24577777777776521 1235677888888888888888888877654
Q ss_pred hHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhh-hcccchhhhhh
Q 021419 214 HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV-DAQRSLCEKPW 292 (312)
Q Consensus 214 ~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~-~~~~~~~e~aL 292 (312)
|. +.+++.|++.+.++ + ....|..+|-++-.. -+++.|.+++. +.+..+.-++.
T Consensus 220 -------~~-~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~~--------------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 -------KD-KRVLSVLIKELKKG-T--VGDLIIEAAGELGDK--------------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred -------CC-hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCCH--------------hHHHHHHHHHhhCCChhHHHHHH
Confidence 22 25789999999876 3 344566666655332 27889999886 44555555443
No 58
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.11 E-value=1.7 Score=43.25 Aligned_cols=139 Identities=8% Similarity=0.034 Sum_probs=96.6
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhc-----cCCCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 021419 133 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYL-----GSASSMHCMVWFLKSGDLSRRRNTVLVLR 207 (312)
Q Consensus 133 G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l-----~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~ 207 (312)
.++.+++.+|.... ..++...++..+.-|...++..-..+ .+++....++.+|.+++.-....|..+|-
T Consensus 53 ~y~~~~l~ll~~~~------~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt 126 (429)
T cd00256 53 QYVKTFVNLLSQID------KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA 126 (429)
T ss_pred HHHHHHHHHHhccC------cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence 57888888886543 34677888887776654443322222 23567888889998888888899999998
Q ss_pred HHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh
Q 021419 208 EVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD 282 (312)
Q Consensus 208 ~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~ 282 (312)
.+.+.+....... ..+-++.-|...++.+.+.....-|+.+|..|...+ +-|..+++.+.|+.|+++|..
T Consensus 127 ~l~~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~----~~R~~f~~~~~v~~L~~~L~~ 196 (429)
T cd00256 127 KLACFGLAKMEGS-DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD----EYRFAFVLADGVPTLVKLLSN 196 (429)
T ss_pred HHHhcCccccchh-HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc----hHHHHHHHccCHHHHHHHHhh
Confidence 8875433211100 111244456666765435678888999999998886 799999999999999999964
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.09 E-value=0.23 Score=36.96 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=55.8
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021419 184 MHCMVWFL-KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 184 l~~lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
|+.+++.| ++.+...|..|+.+|.++ +. +.+++.|+.+++++ ++..+..|..+|-.+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-----------~~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-----------GD-PEAIPALIELLKDE-DPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-----------TH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CC-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-------
Confidence 57888988 777999999998888743 12 25689999999876 88888888888886621
Q ss_pred hHHHHHHcCcHHHHHHHhhhc
Q 021419 263 PIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~ 283 (312)
..+++.|.+++.+.
T Consensus 61 -------~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 61 -------PEAIPALIKLLQDD 74 (88)
T ss_dssp -------HHTHHHHHHHHTC-
T ss_pred -------HHHHHHHHHHHcCC
Confidence 22888999998764
No 60
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=93.40 E-value=0.42 Score=47.59 Aligned_cols=122 Identities=13% Similarity=0.193 Sum_probs=85.4
Q ss_pred ccCCCCHHHHHHHHhcCCHHH--HHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 178 LGSASSMHCMVWFLKSGDLSR--RRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 178 l~~~~~l~~lv~~L~~gs~~~--r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
|...|.++.+++++...+.++ |..|+++|+++.. .++.+.|.+. | ...++.+-+....+...+..+.+|-||-.
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARI-G-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 445688999999999987766 9999999999863 3455555444 4 34444554555567888889999999987
Q ss_pred CCCCCcchHHHHHHcCcHHHHHHHhhhcccc---hhhhhh----ccCCHHHHHHHhhc
Q 021419 256 SASAADKPIQKFVDMGLVSLLLETLVDAQRS---LCEKPW----VFSTDFAAVITGEE 306 (312)
Q Consensus 256 ~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~---~~e~aL----L~~~~eGR~ai~~~ 306 (312)
+. ++...++|++|.+..++---...+.. -|..|| |-+|-+|...|++.
T Consensus 252 HS---eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK 306 (832)
T KOG3678|consen 252 HS---EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEK 306 (832)
T ss_pred hh---HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh
Confidence 65 46789999999988776544433332 233444 66677777766553
No 61
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.08 E-value=2.9 Score=38.75 Aligned_cols=150 Identities=11% Similarity=0.158 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhHHHhccCCCCHHHHH
Q 021419 110 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEALTYLGSASSMHCMV 188 (312)
Q Consensus 110 ~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~-~~~e~k~~l~~~~~l~~lv 188 (312)
.|+.=+..+|... +-|..+.++.+.-.|-.+|...+.. .....++-.+|.++..|.. ++.|.-..+.+.+.+|.-.
T Consensus 69 naLaLlQ~vAshp-etr~~Fl~a~iplyLyPfL~tt~k~--r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 69 NALALLQCVASHP-ETRMPFLKAHIPLYLYPFLNTTSKT--RPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHH-T-TTHHHHHHTTGGGGGHHHHH----S--HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHcCh-HHHHHHHHcCchhhehhhhhccccc--cccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 4777788888844 5888999999888888888554321 0112344456666655543 3445555566889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhccchHH------HHHhhhhhchHHHHHH-hhcCCCChHHHHHHHHHHHHhhcCCCCCc
Q 021419 189 WFLKSGDLSRRRNTVLVLREVISSDHRR------VNMFLEIEGAIESLYT-LIKEPICPTATEASFVVVYHMITSASAAD 261 (312)
Q Consensus 189 ~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~------~~~Ig~~~g~i~~LV~-ll~~~~~~~a~~~Al~aL~~L~~~~~~~~ 261 (312)
+.+..|+--+|.-|.-++..+..++... .+..-...-++..+|. +.++. +++..|..+.+-..|+..+
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-S~RLLKhIIrCYlRLsdnp---- 220 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP-SPRLLKHIIRCYLRLSDNP---- 220 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTST----
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHccCH----
Confidence 9999999999999999999997664311 1111111123444443 33344 9999999999999999986
Q ss_pred chHHHH
Q 021419 262 KPIQKF 267 (312)
Q Consensus 262 ~Nr~~~ 267 (312)
+.|..+
T Consensus 221 rar~aL 226 (262)
T PF04078_consen 221 RAREAL 226 (262)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 666543
No 62
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=93.03 E-value=1.6 Score=44.95 Aligned_cols=143 Identities=13% Similarity=0.165 Sum_probs=99.4
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCC
Q 021419 104 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 183 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~ 183 (312)
|......|+--++.+++-=..-|.-+..+.+...|+.+|... ...+.-.++.+|.+|.-.-...|..+-+.+.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-------~~~i~~~~lgai~NlVmefs~~kskfl~~ng 462 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-------EIMIMGITLGAICNLVMEFSNLKSKFLRNNG 462 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-------chhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence 333333455555555554333344455666788888888433 2356778899999985422445777678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccch-HH-HHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 184 MHCMVWFLKSGDLSRRRNTVLVLREVISSDH-RR-VNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~-~~-~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
|+.+..++..-+...|.++..+|+.++--++ .. .....+. ....++.+..|+ ++...+-++..|.||...
T Consensus 463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki--~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 463 IDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKI--PANLILDLINDP-DWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHh--hHHHHHHHHhCC-CHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999984433 22 2233222 446677788777 888999999999999664
No 63
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=1.1 Score=48.87 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCCChhHHHhccCC----CCHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHH
Q 021419 156 VLEEILSTLTLLFPLAGEALTYLGSA----SSMHCMVWFLKS-GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESL 230 (312)
Q Consensus 156 v~e~Al~iL~~L~~~~~e~k~~l~~~----~~l~~lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~L 230 (312)
-.+.+|++|.+|...+.+.-.+.++. +-++++.-.|+. |+...+.-|..++.-+. ...++..-|... |.+..|
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~-~vL~~L 1818 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATC-NVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhh-hHHHHH
Confidence 35678889988865555444444432 467888888875 47778888988888775 446788888666 899999
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhh
Q 021419 231 YTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 231 V~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~ 281 (312)
+.+|.+. |..+.-++.+||+|+++. +....+.+.|++.-+..++.
T Consensus 1819 L~lLHS~--PS~R~~vL~vLYAL~S~~----~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1819 LTLLHSQ--PSMRARVLDVLYALSSNG----QIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred HHHHhcC--hHHHHHHHHHHHHHhcCc----HHHHHHHhcCchhhhhHHHh
Confidence 9999654 667778999999999985 78889999998888887774
No 64
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=1.5 Score=47.74 Aligned_cols=136 Identities=12% Similarity=0.111 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhchhhhHHHHh----cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHH
Q 021419 110 DLVAKIKKWIKESERNKRCIVD----YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMH 185 (312)
Q Consensus 110 ~al~~l~~lak~s~~nR~~l~~----aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~ 185 (312)
=++..|+++.+..+.--..+.+ -|..+.+...|....+ .+++.-+|.++..+ ..+.+.-+-+++.+.+.
T Consensus 1744 m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~------~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1744 MTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKH------PKLQILALQVILLA-TANKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCC------chHHHHHHHHHHHH-hcccHHHHHHHhhhHHH
Confidence 3778888888876632222222 2777888888876642 46788888888766 33556666677788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 186 CMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 186 ~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
.+..+|.+. +..|+.+..+|+.|++...-.++.+ +. |++..+..++....+++-+..|...|-.|..
T Consensus 1817 ~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~-~h-g~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1817 TLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEAL-EH-GGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHH-hc-CchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 999999654 4688999999999987755667776 65 8899999999887788888778888777753
No 65
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.32 E-value=4 Score=44.34 Aligned_cols=28 Identities=25% Similarity=0.133 Sum_probs=17.0
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021419 133 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 133 G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
++++.|..+|... +..++..|+..|..+
T Consensus 652 ~~~~~L~~aL~D~-------d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 652 GFGPALVAALGDG-------AAAVRRAAAEGLREL 679 (897)
T ss_pred hHHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 4677777777433 245666666666544
No 66
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.94 E-value=3.5 Score=44.76 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcch
Q 021419 184 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKP 263 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~N 263 (312)
++.+..+++..+...|..|+..|-.+- ..+.++..|+..|++. ++..+..|+.+|-.+...
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g-----------~~~~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~------- 837 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELG-----------CPPDDVAAATAALRAS-AWQVRQGAARALAGAAAD------- 837 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcC-----------CcchhHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-------
Confidence 455666666566666666655554431 1111223344555444 455555555555444221
Q ss_pred HHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 264 IQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 264 r~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
-++++|+.+|.|.+..|-..|.
T Consensus 838 -------~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 838 -------VAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred -------chHHHHHHHhcCCCHHHHHHHH
Confidence 1446666666655444443333
No 67
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.85 E-value=2.4 Score=46.18 Aligned_cols=185 Identities=11% Similarity=0.109 Sum_probs=113.7
Q ss_pred CCchhhhHHHHHHHHHHHhchhhhHHHHhc--CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC-Chh-HHHhc
Q 021419 103 EDQTGGRDLVAKIKKWIKESERNKRCIVDY--GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL-AGE-ALTYL 178 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~nR~~l~~a--G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~-~~e-~k~~l 178 (312)
.+...+..++..|..++..+.+ .|... -+++..+..|.. .++.|+-.|+-++--++.+ ..+ .|..
T Consensus 360 ~~w~~R~AaL~Als~i~EGc~~---~m~~~l~~Il~~Vl~~l~D-------phprVr~AA~naigQ~stdl~p~iqk~~- 428 (1075)
T KOG2171|consen 360 TEWKERHAALLALSVIAEGCSD---VMIGNLPKILPIVLNGLND-------PHPRVRYAALNAIGQMSTDLQPEIQKKH- 428 (1075)
T ss_pred CCHHHHHHHHHHHHHHHcccHH---HHHHHHHHHHHHHHhhcCC-------CCHHHHHHHHHHHHhhhhhhcHHHHHHH-
Confidence 3456777888888888887763 33331 244444444432 2678888888888776431 122 1211
Q ss_pred cCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchHHHHHhh-hhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 179 GSASSMHCMVWFLKS-GDLSRRRNTVLVLREVISSDHRRVNMFL-EIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 179 ~~~~~l~~lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig-~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
....++.++..|.+ ++.....+|+..+.+.+...+ +..|+ --++++..++.+|....++...+.++.++-..+..
T Consensus 429 -~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~--~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 429 -HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD--KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred -HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 12356678888876 478999999999999974433 33342 23456665555665555888999999999988765
Q ss_pred CCCCcchHHHHHH--cCcHHHHHHHhhhcc----c---chhhhhh-ccCCHHHHHHHhhcC
Q 021419 257 ASAADKPIQKFVD--MGLVSLLLETLVDAQ----R---SLCEKPW-VFSTDFAAVITGEER 307 (312)
Q Consensus 257 ~~~~~~Nr~~~V~--~G~V~~LvelL~~~~----~---~~~e~aL-L~~~~eGR~ai~~~~ 307 (312)
. -..++. .-.+|-|.+.|..++ + +-+..++ +-..+-||++|..++
T Consensus 506 A------~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 506 A------QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred H------hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 2 234443 236677777775442 1 2222333 555577888887654
No 68
>PTZ00429 beta-adaptin; Provisional
Probab=91.42 E-value=9.9 Score=40.52 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=51.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
++..+.+-|.+.+...|..|.+.+..+- . ++ .+ + -++..+.+.+.|. +|-.+|.|+.+++.+-...
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir-~-~~---i~-e--~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~----- 171 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIR-V-SS---VL-E--YTLEPLRRAVADP-DPYVRKTAAMGLGKLFHDD----- 171 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC-c-HH---HH-H--HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhC-----
Confidence 4555555566666666666666665552 1 21 22 1 2345555555555 6666666666666664432
Q ss_pred hHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 263 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
...+.+.|.++.|.++|.|.+..|.-.|+
T Consensus 172 -pelv~~~~~~~~L~~LL~D~dp~Vv~nAl 200 (746)
T PTZ00429 172 -MQLFYQQDFKKDLVELLNDNNPVVASNAA 200 (746)
T ss_pred -cccccccchHHHHHHHhcCCCccHHHHHH
Confidence 12233456666666666655555555554
No 69
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.25 E-value=9.7 Score=37.96 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=42.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
++..+.+=|.+.+...|..|...|-.+. . ++ .+ . -+++.+.+++.++ +|-.++.|+.+++++....
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~-~~---~~-~--~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~----- 145 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR-T-PE---MA-E--PLIPDVIKLLSDP-SPYVRKKAALALLKIYRKD----- 145 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH--S-HH---HH-H--HHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc-c-cc---hh-h--HHHHHHHHHhcCC-chHHHHHHHHHHHHHhccC-----
Confidence 3444444455555555555555555553 1 21 11 1 2345555555544 5555555555555554321
Q ss_pred hHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 263 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
...++.+.++.+.++|.|.+..+...|+
T Consensus 146 --p~~~~~~~~~~l~~lL~d~~~~V~~~a~ 173 (526)
T PF01602_consen 146 --PDLVEDELIPKLKQLLSDKDPSVVSAAL 173 (526)
T ss_dssp --HCCHHGGHHHHHHHHTTHSSHHHHHHHH
T ss_pred --HHHHHHHHHHHHhhhccCCcchhHHHHH
Confidence 1112211455555555444444444443
No 70
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.64 E-value=0.91 Score=31.02 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHh
Q 021419 197 SRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM 253 (312)
Q Consensus 197 ~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L 253 (312)
..|.+|+..|-+++...+...... .+.+++.|+.+|+|+ ++..+..|..+|-+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~--~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPY--LPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHH--HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHH--HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 578899999988764444333222 247899999999887 667888888887654
No 71
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.30 E-value=1.3 Score=46.69 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHH
Q 021419 152 EHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLY 231 (312)
Q Consensus 152 ~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV 231 (312)
.|..++-.|++.|..| . .. +++ ...++++.+.|.+++...|.+|+..+.++=..+.+.+. +. |.+..+.
T Consensus 104 ~N~~iR~~AlR~ls~l-~-~~---el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~---~~-g~~~~l~ 172 (757)
T COG5096 104 PNEEIRGFALRTLSLL-R-VK---ELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYH---EL-GLIDILK 172 (757)
T ss_pred CCHHHHHHHHHHHHhc-C-hH---HHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhh---cc-cHHHHHH
Confidence 4788999999999977 2 11 222 23789999999999999999999999999656554443 33 8889999
Q ss_pred HhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 232 TLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 232 ~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
.++.|. +|....+|+.+|+.+..-
T Consensus 173 ~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCC-CchHHHHHHHHHHHhchh
Confidence 999887 999999999999998653
No 72
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=90.03 E-value=7.9 Score=37.75 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=105.1
Q ss_pred hhhhH-HHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCH
Q 021419 106 TGGRD-LVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSM 184 (312)
Q Consensus 106 ~~~~~-al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l 184 (312)
.++.. +.+-+|-+.. +...-+.+.+.+.--+++.-|..... ...| +|+|+.....+.......+. ...+.+
T Consensus 39 ~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~----~~~E-R~QALkliR~~l~~~~~~~~--~~~~vv 110 (371)
T PF14664_consen 39 KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNK----NDVE-REQALKLIRAFLEIKKGPKE--IPRGVV 110 (371)
T ss_pred HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCC----ChHH-HHHHHHHHHHHHHhcCCccc--CCHHHH
Confidence 33443 4455555555 44466677777777777777754321 1223 67898877655322111111 245789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchH
Q 021419 185 HCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPI 264 (312)
Q Consensus 185 ~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr 264 (312)
.++|.+..+.+-.-|..|...|.+|+-.+++.. ... |++..|++.+-++ +.+.....+.++.++...+ ..|
T Consensus 111 ralvaiae~~~D~lr~~cletL~El~l~~P~lv---~~~-gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p----~tR 181 (371)
T PF14664_consen 111 RALVAIAEHEDDRLRRICLETLCELALLNPELV---AEC-GGIRVLLRALIDG-SFSISESLLDTLLYLLDSP----RTR 181 (371)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH---HHc-CCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCc----chh
Confidence 999999988888899999999999986666533 255 8889999998887 5568888889999998875 344
Q ss_pred HHHHHcC-cHHHHHHHhhhc
Q 021419 265 QKFVDMG-LVSLLLETLVDA 283 (312)
Q Consensus 265 ~~~V~~G-~V~~LvelL~~~ 283 (312)
+.+..| -++.++.-..|.
T Consensus 182 -~yl~~~~dL~~l~apftd~ 200 (371)
T PF14664_consen 182 -KYLRPGFDLESLLAPFTDF 200 (371)
T ss_pred -hhhcCCccHHHHHHhhhhh
Confidence 445554 556666665543
No 73
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=89.92 E-value=3.6 Score=42.52 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=89.0
Q ss_pred hccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 177 YLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 177 ~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
-+.+.+.+.++|.+|..++...+..+..+|.++.-.=...+...=.. |+|+-|..++.+. ++..++.++-+|+|+.-.
T Consensus 414 g~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~-ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 414 GLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN-NGIDILESMLTDP-DFNSRANSLWVLRHLMFN 491 (678)
T ss_pred CCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc-CcHHHHHHHhcCC-CchHHHHHHHHHHHHHhc
Confidence 35566789999999988888888899999999852212345444365 9999999999887 778889999999999876
Q ss_pred CCCCcchHHHHHHcCc-HHHHHHHhhhcccchhhhhh------ccCCHHHHHHHhhc
Q 021419 257 ASAADKPIQKFVDMGL-VSLLLETLVDAQRSLCEKPW------VFSTDFAAVITGEE 306 (312)
Q Consensus 257 ~~~~~~Nr~~~V~~G~-V~~LvelL~~~~~~~~e~aL------L~~~~eGR~ai~~~ 306 (312)
. ++-+...--... ..-++.+..|.+-.|.|-++ +|.|.+--.-+.+.
T Consensus 492 ~---de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 492 C---DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred c---hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 4 122233223332 33455555677788999988 78887766555443
No 74
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=89.78 E-value=1.4 Score=35.03 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhcc
Q 021419 110 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG 179 (312)
Q Consensus 110 ~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~ 179 (312)
..++-|..++.++..+...+.+.|.+|.+++.-.-. +.++-++|-|+-++.+|...+++|+..|.
T Consensus 5 ~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-----~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 5 DLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-----DHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-----cccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 467788899999999999999998899888875221 23678899999999999888899988765
No 75
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=88.93 E-value=4 Score=40.74 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=73.2
Q ss_pred CCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhH-HHhccCC
Q 021419 103 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEA-LTYLGSA 181 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~-k~~l~~~ 181 (312)
.++..+..|+..+.++.+.++. .+... +++.|..+|.+. +..++..|+.++..+ ..+++. ... -+
T Consensus 126 ~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~-------~~~V~~~a~~~l~~i-~~~~~~~~~~--~~ 191 (526)
T PF01602_consen 126 PSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDK-------DPSVVSAALSLLSEI-KCNDDSYKSL--IP 191 (526)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHS-------SHHHHHHHHHHHHHH-HCTHHHHTTH--HH
T ss_pred CchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCC-------cchhHHHHHHHHHHH-ccCcchhhhh--HH
Confidence 4555556677777777765442 33333 677888888543 356777777777766 111111 000 01
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCc
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 261 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~ 261 (312)
..++.+..++...+.-.+.....+|..+....+..... ..+++.+..++++. ++...-.|..++.++....
T Consensus 192 ~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~----~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~---- 262 (526)
T PF01602_consen 192 KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK----NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSP---- 262 (526)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSH----
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH----HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcch----
Confidence 12333333333445555555555555554332221100 13455555555433 3444444555555544432
Q ss_pred chHHHHHHcCcHHHHHHHhhh
Q 021419 262 KPIQKFVDMGLVSLLLETLVD 282 (312)
Q Consensus 262 ~Nr~~~V~~G~V~~LvelL~~ 282 (312)
. +-..++++|+.+|.+
T Consensus 263 ~-----~~~~~~~~L~~lL~s 278 (526)
T PF01602_consen 263 E-----LLQKAINPLIKLLSS 278 (526)
T ss_dssp H-----HHHHHHHHHHHHHTS
T ss_pred H-----HHHhhHHHHHHHhhc
Confidence 1 333355556665553
No 76
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.70 E-value=1.4 Score=40.37 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHhcc-CCC--CHHHH----HHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhc
Q 021419 154 VSVLEEILSTLTLLFPLAGEALTYLG-SAS--SMHCM----VWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEG 225 (312)
Q Consensus 154 ~~v~e~Al~iL~~L~~~~~e~k~~l~-~~~--~l~~l----v~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g 225 (312)
..-+.-||.+|..|+. .+.|-++|- .+. .++.+ +++|. +++...|+-|+.+|..|+..+...+..++..++
T Consensus 138 lSPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 3458899999999855 567777654 433 34444 44444 358899999999999998776666767877779
Q ss_pred hHHHHHHhhcCC
Q 021419 226 AIESLYTLIKEP 237 (312)
Q Consensus 226 ~i~~LV~ll~~~ 237 (312)
+|..||.++.+.
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999999754
No 77
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=88.14 E-value=12 Score=33.02 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCC-HHHH
Q 021419 109 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS-MHCM 187 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~-l~~l 187 (312)
..|+.-+..++..-...=.-+ -.-++|.|+..+.+. +..+.+.|..+|..+..... ..+.. ++.+
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll~~~~~~-------~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l 136 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPY-ADILLPPLLKKLGDS-------KKFIREAANNALDAIIESCS------YSPKILLEIL 136 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGG----------HHHHHHHHHHHHHHHTTS-------H--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHccc-------cHHHHHHHHHHHHHHHHHCC------cHHHHHHHHH
Confidence 345556666665433221111 113556666666443 23456666666665532111 01223 4556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhh---hhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 188 VWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLE---IEGAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 188 v~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~---~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
...+++.+...|..++..|..+....+.....+.. .+.+++.+++.+.|+ ++..++.|-.++..+...
T Consensus 137 ~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 137 SQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHH
Confidence 66677789999999999999886443311222211 135788888999888 889999999999888543
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=88.00 E-value=6.7 Score=40.15 Aligned_cols=132 Identities=12% Similarity=0.186 Sum_probs=82.2
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHH-HHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 021419 133 GAVSVLAAAFESFSKTCLDEHVSVLEEILST-LTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVIS 211 (312)
Q Consensus 133 G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~i-L~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~ 211 (312)
++++.+-.+|.++++.. ...++....|+.+ +..+ + ....|. .+++++.-|..-.+.+|.+++.+|-.+..
T Consensus 213 yiv~~lp~il~~~~d~~-~~Vr~Aa~~a~kai~~~~-~-~~aVK~------llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKI-NKVREAAVEAAKAIMRCL-S-AYAVKL------LLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred hHHhhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhc-C-cchhhH------hhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 46677777776664321 1122333333333 3332 1 112222 45555555555588999999999998876
Q ss_pred cchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhc
Q 021419 212 SDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 212 ~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~ 283 (312)
..+.....- -+.+++.|...+-|. .|..++++..+|..+++.- +|-. ++ -.++.|++.+.+.
T Consensus 284 ~ap~qLs~~--lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svi----dN~d--I~-~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 284 CAPKQLSLC--LPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVI----DNPD--IQ-KIIPTLLDALADP 345 (569)
T ss_pred hchHHHHHH--HhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhh----ccHH--HH-HHHHHHHHHhcCc
Confidence 655433322 247899999999887 8999999999999999874 4544 11 1566677766543
No 79
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=87.29 E-value=10 Score=32.56 Aligned_cols=119 Identities=8% Similarity=0.139 Sum_probs=83.8
Q ss_pred CCCCHHHHHHHHhcCCH------HHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC-CChHHHHHHHHHHHH
Q 021419 180 SASSMHCMVWFLKSGDL------SRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP-ICPTATEASFVVVYH 252 (312)
Q Consensus 180 ~~~~l~~lv~~L~~gs~------~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~-~~~~a~~~Al~aL~~ 252 (312)
+.+.+..++.++.+|+. +.-..+.....+|...+--..+.+ +. .+|...+..+... .++...+.|+..|.+
T Consensus 9 ~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~-~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 9 SRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SD-SFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred hccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cH-HHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 45788999999998873 445567777777764432244666 43 6999999998754 357788899999999
Q ss_pred hhcCCCCCcchHHHHHHcC-cHHHHHHHhhhcccchhhhhh------ccCCHHHHH-HHh
Q 021419 253 MITSASAADKPIQKFVDMG-LVSLLLETLVDAQRSLCEKPW------VFSTDFAAV-ITG 304 (312)
Q Consensus 253 L~~~~~~~~~Nr~~~V~~G-~V~~LvelL~~~~~~~~e~aL------L~~~~eGR~-ai~ 304 (312)
++... ...-..|+.. -++.|+.+|.+.+..+.-.++ +...++++. ++.
T Consensus 87 ~Vl~S----~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 87 IVLNS----PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHhCC----HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 98875 5667777776 899999999876555555444 455555533 443
No 80
>PTZ00429 beta-adaptin; Provisional
Probab=87.04 E-value=6.1 Score=42.10 Aligned_cols=113 Identities=13% Similarity=0.137 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 021419 153 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 232 (312)
Q Consensus 153 ~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ 232 (312)
++.++-.||+.|..+.. .+-- +-.++.+.+.|...++-.|..|+..+..+-..+++ .+ ...|+++.|.+
T Consensus 118 Np~IRaLALRtLs~Ir~--~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv-~~~~~~~~L~~ 186 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRV--SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LF-YQQDFKKDLVE 186 (746)
T ss_pred CHHHHHHHHHHHHcCCc--HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cc-cccchHHHHHH
Confidence 56677777777776521 1111 12456677778788999999999999999655453 33 33488999999
Q ss_pred hhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh
Q 021419 233 LIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD 282 (312)
Q Consensus 233 ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~ 282 (312)
+|.|. +|..+-+|+.+|+.++... .++.. ...+.+.-|+..|.+
T Consensus 187 LL~D~-dp~Vv~nAl~aL~eI~~~~----~~~l~-l~~~~~~~Ll~~L~e 230 (746)
T PTZ00429 187 LLNDN-NPVVASNAAAIVCEVNDYG----SEKIE-SSNEWVNRLVYHLPE 230 (746)
T ss_pred HhcCC-CccHHHHHHHHHHHHHHhC----chhhH-HHHHHHHHHHHHhhc
Confidence 99887 8899999999999998653 22221 223445555655554
No 81
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.60 E-value=4.7 Score=31.58 Aligned_cols=69 Identities=9% Similarity=0.104 Sum_probs=52.2
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 254 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~ 254 (312)
..++++...+...+...|..|+-.|++++.... -+.+..-+.++..|.+++.|. ++ .++.|...|-+|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~-d~-~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP-DE-NVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC-ch-hHHHHHHHHHHHh
Confidence 468888999989999999999999999975432 233334457899999999886 54 4666777776653
No 82
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=86.54 E-value=4.5 Score=32.11 Aligned_cols=69 Identities=10% Similarity=0.206 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc-CCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcC
Q 021419 199 RRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK-EPICPTATEASFVVVYHMITSASAADKPIQKFVDMG 271 (312)
Q Consensus 199 r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~-~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G 271 (312)
|..-+++|-+|+..+..+...+.+. |.|+.++.--. |..+|-.++.|+.++.|||... .+|...+.+.-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n---~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN---PENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC---HHHHHHHHhcc
Confidence 5567888889987778888889666 77888886633 5569999999999999999865 47877766654
No 83
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.34 E-value=5.2 Score=38.01 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcch
Q 021419 184 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKP 263 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~N 263 (312)
+-.++.+|.+-++..|..|+.-+..++.. . .+.........++.|.+++.+. .+ .+.|..+|-|++-.. .-
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~-~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~----~l 75 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-G-LQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKE----EL 75 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-c-hhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhH----HH
Confidence 45688899999999999999999998754 2 2222223336788999999876 33 677889999998774 67
Q ss_pred HHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 264 IQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 264 r~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
|..+.+. .+..+..++.+.....++.+.
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~c 103 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLIC 103 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHH
Confidence 8888888 777777777665455555433
No 84
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=86.01 E-value=11 Score=34.92 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhh
Q 021419 156 VLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLI 234 (312)
Q Consensus 156 v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll 234 (312)
....||.+|.=++-.+..+|........+..++.+|. .+....+.++..+|..+.-.++.+.... +..+.+..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~F-E~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDF-EELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHH-HHhCCHHHHHHHH
Confidence 3555667765554557889999999999999999994 4577888888888888776777777666 5558899999999
Q ss_pred cCCC-ChHHHHHHHHHHHHhhc
Q 021419 235 KEPI-CPTATEASFVVVYHMIT 255 (312)
Q Consensus 235 ~~~~-~~~a~~~Al~aL~~L~~ 255 (312)
++.. +...+-..+..||-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 9763 33343446666666543
No 85
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=84.99 E-value=24 Score=30.33 Aligned_cols=124 Identities=13% Similarity=0.151 Sum_probs=85.1
Q ss_pred HHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcC--CHHHHHHHHHHH
Q 021419 129 IVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG--DLSRRRNTVLVL 206 (312)
Q Consensus 129 l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~g--s~~~r~~Aa~lL 206 (312)
+.+.|.+..|+.++.++...+ +...+.+..+|.++..|.....-+-+ ..++.++..++.+.+.. +...-+-|..+|
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~-~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQ-PCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHhccCHHHHHHHHHcCCccC-cchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 445678899999997653200 11235677788888777432111222 22456899999999866 467778899999
Q ss_pred HHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 207 REVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 207 ~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
+++...++.....+ ..+==++.|+..|.+. +++-...|+..+-+|..-
T Consensus 85 Es~Vl~S~~ly~~V-~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 85 ESIVLNSPKLYQLV-EQEVTLESLIRHLQVS-NQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHhCCHHHHHHH-hccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhc
Confidence 99986666655566 3335689999999876 788888888888888543
No 86
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=84.85 E-value=2.7 Score=35.70 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc-CCCChHHHHHHHHHHHHhhcCCCCCcch
Q 021419 185 HCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK-EPICPTATEASFVVVYHMITSASAADKP 263 (312)
Q Consensus 185 ~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~-~~~~~~a~~~Al~aL~~L~~~~~~~~~N 263 (312)
+.+-..+..++.+....|..++..|--..++....|-..+|+++.++.+.. +..+......++++|.+-|.. ++
T Consensus 46 ~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-----~~ 120 (157)
T PF11701_consen 46 DFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-----KS 120 (157)
T ss_dssp HHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-----HH
T ss_pred HHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-----HH
Confidence 334444556677788899999988865555555444455699999999997 344778888888888888887 58
Q ss_pred HHHHHHcCcHHHHHHHhhhcc-cc-hhhhhh
Q 021419 264 IQKFVDMGLVSLLLETLVDAQ-RS-LCEKPW 292 (312)
Q Consensus 264 r~~~V~~G~V~~LvelL~~~~-~~-~~e~aL 292 (312)
+..++..-+++.|-+++...+ .. +-.+|+
T Consensus 121 ~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~ 151 (157)
T PF11701_consen 121 CRTFISKNYVSWLKELYKNSKDDSEIRVLAA 151 (157)
T ss_dssp HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 888888888999999985432 23 555555
No 87
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=84.82 E-value=5.8 Score=36.74 Aligned_cols=93 Identities=11% Similarity=0.041 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHH
Q 021419 108 GRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCM 187 (312)
Q Consensus 108 ~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~l 187 (312)
...|++=|.-++--++..|.++.......+|+.+|.... ...++-.+|.+|..+..++..|.+...+-+.+..+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~------~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v 181 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSN------PPAIQSACLDTLVCILLDSPENQRDFEELNGLSTV 181 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCC------CchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHH
Confidence 345788888889889999999999999999999995432 24677778877766556678888888888999999
Q ss_pred HHHHhcCCH--HHHHHHHHHH
Q 021419 188 VWFLKSGDL--SRRRNTVLVL 206 (312)
Q Consensus 188 v~~L~~gs~--~~r~~Aa~lL 206 (312)
+.++++.+. +.|.-.+-.|
T Consensus 182 ~~llk~~~~~~~~r~K~~EFL 202 (257)
T PF08045_consen 182 CSLLKSKSTDRELRLKCIEFL 202 (257)
T ss_pred HHHHccccccHHHhHHHHHHH
Confidence 999998753 3444444333
No 88
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.99 E-value=19 Score=35.95 Aligned_cols=158 Identities=13% Similarity=0.183 Sum_probs=97.5
Q ss_pred HHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcC-C-HHHHHHHHHHH
Q 021419 129 IVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG-D-LSRRRNTVLVL 206 (312)
Q Consensus 129 l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~g-s-~~~r~~Aa~lL 206 (312)
+++.++++.|+.-+...+... .........+++++.+|...+.+--..+++.|.+..+..=+... . ...+++|.-+|
T Consensus 172 Lvdg~vlaLLvqnveRLdEsv-keea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiL 250 (536)
T KOG2734|consen 172 LVDGQVLALLVQNVERLDESV-KEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEIL 250 (536)
T ss_pred HHhccHHHHHHHHHHHhhhcc-hhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 456688899988886543211 11234567788899888655544434444455554444433222 2 34688888888
Q ss_pred HHHhccchHHHHHhhhhhchHHHHHHhhc-----CCCC---hHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHH
Q 021419 207 REVISSDHRRVNMFLEIEGAIESLYTLIK-----EPIC---PTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLE 278 (312)
Q Consensus 207 ~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~-----~~~~---~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~Lve 278 (312)
.-+...+.+++...|.. ..+..|++-+. ++.. .+..+.-..+|+.+...+ .||.+++....++...=
T Consensus 251 aillq~s~e~~~~~~~l-~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~----~nr~~Fl~~EGlqLm~L 325 (536)
T KOG2734|consen 251 AILLQNSDENRKLLGPL-DGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP----ANRERFLKGEGLQLMNL 325 (536)
T ss_pred HHHhccCchhhhhhcCc-ccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh----hhhhhhhccccHHHHHH
Confidence 88876667788899887 55566665442 2211 245556666777776665 89999999877665544
Q ss_pred Hhhh--cccchhhhhh
Q 021419 279 TLVD--AQRSLCEKPW 292 (312)
Q Consensus 279 lL~~--~~~~~~e~aL 292 (312)
++.. ..+.-+-++|
T Consensus 326 mlr~Kk~sr~SalkvL 341 (536)
T KOG2734|consen 326 MLREKKVSRGSALKVL 341 (536)
T ss_pred HHHHHHHhhhhHHHHH
Confidence 4432 2455666666
No 89
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.70 E-value=37 Score=37.46 Aligned_cols=194 Identities=10% Similarity=0.024 Sum_probs=110.3
Q ss_pred chhh-hhhhchhhhhccccCCCCCCCCCChHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHH---HhcC
Q 021419 58 TSLL-YQQTKFNLQREKSEGYAKLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCI---VDYG 133 (312)
Q Consensus 58 ~tLr-Iq~Wc~~~~~n~~~gv~tp~~p~~~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l---~~aG 133 (312)
+-|- .|-|.. +|++.-+||. +..-.++-|.+ |..-++.|..|++==|--+-.+ -.-|
T Consensus 452 eQLTAFevWLd-------~gse~r~PPe---QLPiVLQVLLS---------QvHRlRAL~LL~RFLDlGpWAV~LaLsVG 512 (1387)
T KOG1517|consen 452 EQLTAFEVWLD-------YGSESRTPPE---QLPIVLQVLLS---------QVHRLRALVLLARFLDLGPWAVDLALSVG 512 (1387)
T ss_pred HHHHHHHHHHH-------hccccCCChH---hcchHHHHHHH---------HHHHHHHHHHHHHHhccchhhhhhhhccc
Confidence 3455 899997 4666444442 33223333322 1223444555554333333322 2239
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHH-HHHhcCCCChhHHHhccCCCCHHHHHHHHhc-C--CHHHHHHHHHHHHHH
Q 021419 134 AVSVLAAAFESFSKTCLDEHVSVLEEILS-TLTLLFPLAGEALTYLGSASSMHCMVWFLKS-G--DLSRRRNTVLVLREV 209 (312)
Q Consensus 134 ~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~-iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~-g--s~~~r~~Aa~lL~~L 209 (312)
+.|..+.+|.+...+ -..++--+-+ ||. . |...+.-+...+.=.-++.+|.. + +.|-|.-||.+|-.+
T Consensus 513 IFPYVLKLLQS~a~E----LrpiLVFIWAKILA---v-D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAvi 584 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARE----LRPILVFIWAKILA---V-DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVI 584 (1387)
T ss_pred hHHHHHHHhccchHh----hhhhHHHHHHHHHh---c-CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHH
Confidence 999999999876321 1222333323 332 2 44433333332222233344444 3 457888899888888
Q ss_pred hccch-HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhc
Q 021419 210 ISSDH-RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 210 s~~~~-~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~ 283 (312)
..--. ..+..+ +. +.|..-...+.++..|-.+.-..-+|-.|-..- +++|..-++.++.+.|+.+|.|.
T Consensus 585 v~nf~lGQ~acl-~~-~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~---~~Arw~G~r~~AhekL~~~LsD~ 654 (1387)
T KOG1517|consen 585 VRNFKLGQKACL-NG-NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY---DEARWSGRRDNAHEKLILLLSDP 654 (1387)
T ss_pred HcccchhHHHhc-cc-cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc---chhhhccccccHHHHHHHHhcCc
Confidence 53211 233444 44 667766777777535677777777887775433 48999999999999999999875
No 90
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=83.30 E-value=14 Score=31.46 Aligned_cols=118 Identities=13% Similarity=0.175 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhh-hHHHHhcCCHHHHHHHhhccccc--ccchhHHHHHHHHHH
Q 021419 87 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERN-KRCIVDYGAVSVLAAAFESFSKT--CLDEHVSVLEEILST 163 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~n-R~~l~~aG~v~~Lv~lL~s~~~~--~~~~~~~v~e~Al~i 163 (312)
......++.+... . ...+.+..|+..-+..... =+-|.+.|++..|+.+|...... ........+.+.+..
T Consensus 66 ~~p~~~i~~L~~~----~--~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~C 139 (187)
T PF06371_consen 66 SSPEWYIKKLKSR----P--STSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRC 139 (187)
T ss_dssp HHHHHHHHHHTTT--------HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHcc----C--ccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHH
Confidence 3455667777432 1 1125677777666655421 11245668889999998553210 001234567788888
Q ss_pred HHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 021419 164 LTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 210 (312)
Q Consensus 164 L~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls 210 (312)
|..+.........++..++.+..|+..|.+.+...|..|.-+|-.++
T Consensus 140 lkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 140 LKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 88775432333456678999999999999999999999998887664
No 91
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=82.77 E-value=2.6 Score=25.48 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=24.7
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 226 AIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 226 ~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
+++.++++++|+ ++.-+.+|..+|-.++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 478899999988 89999999999998864
No 92
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=82.19 E-value=5.8 Score=39.60 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=66.1
Q ss_pred HHHHHhccchHHHHHhhhhhchHHHHHHhh---------cCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHH
Q 021419 205 VLREVISSDHRRVNMFLEIEGAIESLYTLI---------KEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSL 275 (312)
Q Consensus 205 lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll---------~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~ 275 (312)
.|.-|+.+ ....+.|... ..+..|.+.- .+..++.....|++||.|+.... ...|..+++.|..+.
T Consensus 4 ~LRiLsRd-~~~~~~l~~~-~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s---~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 4 TLRILSRD-PTGLDPLFTE-EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS---PSARQIFVDLGLAEK 78 (446)
T ss_pred HHHHHccC-cccchhhccH-HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC---HHHHHHHHHcCcHHH
Confidence 44445433 4444455343 5566666665 23346789999999999998765 479999999999999
Q ss_pred HHHHhhhcc-c--c-----hhhhhh-c--cCCHHHHHHHhhcCCc
Q 021419 276 LLETLVDAQ-R--S-----LCEKPW-V--FSTDFAAVITGEERPT 309 (312)
Q Consensus 276 LvelL~~~~-~--~-----~~e~aL-L--~~~~eGR~ai~~~~~~ 309 (312)
|++.|.... + . ..-+.| | +.+.+.|..++.+..+
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~ 123 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG 123 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence 999997652 1 1 222222 3 3467888888776443
No 93
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=80.86 E-value=3.4 Score=28.07 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCCChh-HHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 021419 155 SVLEEILSTLTLLFPLAGE-ALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREV 209 (312)
Q Consensus 155 ~v~e~Al~iL~~L~~~~~e-~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~L 209 (312)
.+++.|+.+|..++....+ .+. ..+..++.++..|++.+.+.|.+|+..|-+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP--YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678888888876533322 122 2356899999999888889999999888653
No 94
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=80.74 E-value=10 Score=40.32 Aligned_cols=95 Identities=13% Similarity=0.209 Sum_probs=78.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
++..+.+=|.+.+...|..|.+.+-.| .. .+.+|. +++.+.+.+.++ ++..++.|.-++..+=..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l-~~----~el~~~---~~~~ik~~l~d~-~ayVRk~Aalav~kly~l------ 157 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL-RV----KELLGN---IIDPIKKLLTDP-HAYVRKTAALAVAKLYRL------ 157 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc-Ch----HHHHHH---HHHHHHHHccCC-cHHHHHHHHHHHHHHHhc------
Confidence 677888888889999999999998877 22 345633 689999999888 899999999999999765
Q ss_pred hHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 263 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
.+....+.|.+..+..++.|.++.|.--|+
T Consensus 158 d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl 187 (757)
T COG5096 158 DKDLYHELGLIDILKELVADSDPIVIANAL 187 (757)
T ss_pred CHhhhhcccHHHHHHHHhhCCCchHHHHHH
Confidence 467788899999999999988877777776
No 95
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=80.38 E-value=11 Score=32.47 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhc-hHHHHHH
Q 021419 154 VSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEG-AIESLYT 232 (312)
Q Consensus 154 ~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g-~i~~LV~ 232 (312)
+.++.+++.+|.-|+.-.+. +. ...++.+...|+..++..|.+|..+|..|... + .+ +..| ++..++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d----~i-k~k~~l~~~~l~ 70 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D----MI-KVKGQLFSRILK 70 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C----ce-eehhhhhHHHHH
Confidence 35677777777655321111 11 13688999999999999999999999999633 2 22 2234 3477778
Q ss_pred hhcCCCChHHHHHHHHHHHHhhcC
Q 021419 233 LIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 233 ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
.+.|. ++.-+..|..++..+...
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHh
Confidence 88777 888888898888888765
No 96
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=80.16 E-value=40 Score=34.20 Aligned_cols=142 Identities=12% Similarity=0.148 Sum_probs=91.8
Q ss_pred chhhhHHHHHHHHHHHhchh---hhHHHHhcCCHHHHHHHhhccc-ccccchhHHHHHHHHHHHHhcCCCChh---HHHh
Q 021419 105 QTGGRDLVAKIKKWIKESER---NKRCIVDYGAVSVLAAAFESFS-KTCLDEHVSVLEEILSTLTLLFPLAGE---ALTY 177 (312)
Q Consensus 105 ~~~~~~al~~l~~lak~s~~---nR~~l~~aG~v~~Lv~lL~s~~-~~~~~~~~~v~e~Al~iL~~L~~~~~e---~k~~ 177 (312)
.+++..|+--.-+++|.+|- ||+.+-++=..+++=.+|.+.+ ++++..+ .....++++|..++. ++| .+++
T Consensus 25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~-Vy~~i~itvLacFC~-~pElAsh~~~ 102 (698)
T KOG2611|consen 25 DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDD-VYLQISITVLACFCR-VPELASHEEM 102 (698)
T ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHH-HHHHHHHHHHHHHhC-ChhhccCHHH
Confidence 36778899888999998763 7888888844588888886653 2222111 235667889988865 333 2444
Q ss_pred ccCCCCHHHHHHHHhcC-CH--H----HHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHH
Q 021419 178 LGSASSMHCMVWFLKSG-DL--S----RRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVV 250 (312)
Q Consensus 178 l~~~~~l~~lv~~L~~g-s~--~----~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL 250 (312)
+ +.||.+..++..| +. + .-..+-..|+.+++..+.....| .. |.++.+-++-..........-|+.+|
T Consensus 103 v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~-G~~~~~~Q~y~~~~~~~d~alal~Vl 177 (698)
T KOG2611|consen 103 V---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-AS-GGLRVIAQMYELPDGSHDMALALKVL 177 (698)
T ss_pred H---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hc-CchHHHHHHHhCCCCchhHHHHHHHH
Confidence 4 5799999999887 32 2 33467778888877655566677 55 88999888754321222333355555
Q ss_pred HHh
Q 021419 251 YHM 253 (312)
Q Consensus 251 ~~L 253 (312)
.-+
T Consensus 178 ll~ 180 (698)
T KOG2611|consen 178 LLL 180 (698)
T ss_pred HHH
Confidence 443
No 97
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.83 E-value=1.5 Score=43.11 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=49.5
Q ss_pred cchhhhhhHHHhhhhccc-chhhH-HhhHHHHhhCCCcccccccccCCCCccccchhh--hhhhch
Q 021419 6 HVRLINLAKWLVESAWVA-LRLFQ-ERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~-er~~~e~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
..+.|+.-+.++.+|+++ =+++| .-|..+|+.....||+=+++.....+.+|..|. |+.|..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 357899999999999977 56655 555666777778899999998877899999999 666643
No 98
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.45 E-value=50 Score=36.46 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCC
Q 021419 181 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAA 260 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~ 260 (312)
+-.++.+-.+|.+.++..|..|..+|-.++.= -.+.++|.-+.+++..+..|+|. +|+.+-+|+.++-.++..-
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG--c~~~m~~~l~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl--- 420 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEG--CSDVMIGNLPKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDL--- 420 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhh---
Confidence 34677788889999999999999998888532 23456666677899999999988 9999999999999997643
Q ss_pred cchHHHHHHcCcHHHHHHHhhhc
Q 021419 261 DKPIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 261 ~~Nr~~~V~~G~V~~LvelL~~~ 283 (312)
..-..+--..-..+.|+..+.+.
T Consensus 421 ~p~iqk~~~e~l~~aL~~~ld~~ 443 (1075)
T KOG2171|consen 421 QPEIQKKHHERLPPALIALLDST 443 (1075)
T ss_pred cHHHHHHHHHhccHHHHHHhccc
Confidence 13444444445666777777654
No 99
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=78.27 E-value=42 Score=33.22 Aligned_cols=13 Identities=8% Similarity=-0.105 Sum_probs=8.5
Q ss_pred cccchhh-hhhhch
Q 021419 55 KVNTSLL-YQQTKF 67 (312)
Q Consensus 55 ~PN~tLr-Iq~Wc~ 67 (312)
.|+++|. ++++-.
T Consensus 26 ~p~~~l~~la~lde 39 (410)
T TIGR02270 26 APDYVLEDLAELEE 39 (410)
T ss_pred CCCCCHHHHHhHHH
Confidence 4677777 666655
No 100
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.80 E-value=67 Score=30.75 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhcc--C----CC
Q 021419 109 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG--S----AS 182 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~--~----~~ 182 (312)
..|+..+-+++....- |+.+.+. ++.++...+... ....-+.+..+|.+|+..++....++. . .+
T Consensus 60 ~~a~~alVnlsq~~~l-~~~ll~~-~~k~l~~~~~~p-------~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~ 130 (353)
T KOG2973|consen 60 EPAATALVNLSQKEEL-RKKLLQD-LLKVLMDMLTDP-------QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSG 130 (353)
T ss_pred cHHHHHHHHHHhhHHH-HHHHHHH-HHHHHHHHhcCc-------ccchHHHHHHHHHHhccCchHHHHHHHhcccccccc
Confidence 4577888888886664 4444444 777777776432 112445566778888665544433322 2 45
Q ss_pred CHHHHHHHHhcC-CHH-HHHHHHHHHHHHhccchHHHHHhhhhhc-hHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCC
Q 021419 183 SMHCMVWFLKSG-DLS-RRRNTVLVLREVISSDHRRVNMFLEIEG-AIESLYTLIKEPICPTATEASFVVVYHMITSASA 259 (312)
Q Consensus 183 ~l~~lv~~L~~g-s~~-~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g-~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~ 259 (312)
.++....+..+| +.. .=.+-+-++.+|+......+-.+ ...- ....|+.+-. ..+.--+.--+.+|.|.|--.
T Consensus 131 lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~-~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~-- 206 (353)
T KOG2973|consen 131 LMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLL-EPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA-- 206 (353)
T ss_pred hHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhc-chhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc--
Confidence 677777777666 322 22456677777876543333333 3322 2223333322 212112223456777877654
Q ss_pred CcchHHHHHHcC--cHHHHHHH---------------------hhhc-cc--------chhhhhh-ccCCHHHHHHHhhc
Q 021419 260 ADKPIQKFVDMG--LVSLLLET---------------------LVDA-QR--------SLCEKPW-VFSTDFAAVITGEE 306 (312)
Q Consensus 260 ~~~Nr~~~V~~G--~V~~Lvel---------------------L~~~-~~--------~~~e~aL-L~~~~eGR~ai~~~ 306 (312)
++...+...+ +.+.|+-- |++. +| ...|-.+ ||.+..||+.+++.
T Consensus 207 --~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~k 284 (353)
T KOG2973|consen 207 --KLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSK 284 (353)
T ss_pred --hhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhc
Confidence 5666666633 44444332 2211 11 1222222 99999999999886
Q ss_pred CC
Q 021419 307 RP 308 (312)
Q Consensus 307 ~~ 308 (312)
+.
T Consensus 285 gv 286 (353)
T KOG2973|consen 285 GV 286 (353)
T ss_pred Cc
Confidence 54
No 101
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.59 E-value=30 Score=36.77 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=90.1
Q ss_pred hHHHHhc--CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHH
Q 021419 126 KRCIVDY--GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTV 203 (312)
Q Consensus 126 R~~l~~a--G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa 203 (312)
..+...+ +++|.|+.+|...++++.+......-.|=..|-.++ .-.++.|+. -.++.+-.-+++.++.-|+.|+
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A---~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaav 385 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFA---QCVGDDIVP-HVLPFIEENIQNPDWRNREAAV 385 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHH---HHhcccchh-hhHHHHHHhcCCcchhhhhHHH
Confidence 4444443 789999999965432111111222233333444331 112233333 3666666678889999999999
Q ss_pred HHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhc
Q 021419 204 LVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 204 ~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~ 283 (312)
..+-++..- ++-....--.+++++.++.++.|. +-.....+.-+|..++..-. +..-...-..+.++.|++=|.|.
T Consensus 386 mAFGSIl~g-p~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~De 461 (859)
T KOG1241|consen 386 MAFGSILEG-PEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLNDE 461 (859)
T ss_pred HHHHhhhcC-CchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhhhC
Confidence 999888632 321112223358999999999876 66666777778888876421 11222223345677777777664
Q ss_pred ccchhhhh
Q 021419 284 QRSLCEKP 291 (312)
Q Consensus 284 ~~~~~e~a 291 (312)
+.++..+
T Consensus 462 -Prva~N~ 468 (859)
T KOG1241|consen 462 -PRVASNV 468 (859)
T ss_pred -chHHHHH
Confidence 3444443
No 102
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=77.37 E-value=42 Score=33.21 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=16.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREV 209 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~L 209 (312)
..+.+..+|++.++..|..|+.+|-.+
T Consensus 148 ~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 148 PGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 455566666666666666666666544
No 103
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=77.35 E-value=8.7 Score=35.29 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHHhccchHHHHHh------hhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 021419 195 DLSRRRNTVLVLREVISSDHRRVNMF------LEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFV 268 (312)
Q Consensus 195 s~~~r~~Aa~lL~~Ls~~~~~~~~~I------g~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V 268 (312)
...-|..|.-+|..|+-. +.|+..| .+.+.++..|+++|....++-.++-|+..|.+||.... .--|.-+.
T Consensus 137 ~lSPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~--~~~r~iA~ 213 (257)
T PF12031_consen 137 PLSPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDE--AAARAIAM 213 (257)
T ss_pred CCCHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccH--HHHHHHHH
Confidence 456788999999999733 4444433 13345788889999887788999999999999997640 12556677
Q ss_pred HcCcHHHHHHHhhhcc
Q 021419 269 DMGLVSLLLETLVDAQ 284 (312)
Q Consensus 269 ~~G~V~~LvelL~~~~ 284 (312)
+.++|..|+..+.+++
T Consensus 214 q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 214 QKPCISHLIAFIEDAE 229 (257)
T ss_pred hhchHHHHHHHHHHHH
Confidence 7899999999997653
No 104
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=77.30 E-value=19 Score=30.10 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=58.2
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
.+++.|.+=|++++......|..+|..+..- .......|++. +++..|++++.+..++..++..+..+.+-..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASR-EFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4788888889999999999999999998743 24455667554 9999999999876577788888888888764
No 105
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=77.23 E-value=72 Score=30.97 Aligned_cols=164 Identities=12% Similarity=0.098 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHhchhhhH----HHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCH
Q 021419 109 RDLVAKIKKWIKESERNKR----CIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSM 184 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~----~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l 184 (312)
.=+.+.|-.+..+++.|-. .++.+|..+.++..+...+ -+|...|...+..++. -......|-.+..+
T Consensus 100 iLackqigcilEdcDtnaVseillvvNaeilklildcIgged-------deVAkAAiesikrial-fpaaleaiFeSell 171 (524)
T KOG4413|consen 100 ILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-------DEVAKAAIESIKRIAL-FPAALEAIFESELL 171 (524)
T ss_pred hhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-------HHHHHHHHHHHHHHHh-cHHHHHHhcccccC
Confidence 3477788888888886543 2467799999999885442 2455555555554421 23334444333333
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCc
Q 021419 185 HCMVWF---LKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 261 (312)
Q Consensus 185 ~~lv~~---L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~ 261 (312)
+.+-.. .+. +.-.|.--..++-++++.+++.....-.+ |++.-|..=++...+.-..-..+...+.|...+
T Consensus 172 Ddlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkS-GLldlLeaElkGteDtLVianciElvteLaete---- 245 (524)
T KOG4413|consen 172 DDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKS-GLLDLLEAELKGTEDTLVIANCIELVTELAETE---- 245 (524)
T ss_pred ChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhh-hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh----
Confidence 222111 222 33455566677888888887655555344 777777766664345556667888889998774
Q ss_pred chHHHHHHcCcHHHHHHHhhhcccc
Q 021419 262 KPIQKFVDMGLVSLLLETLVDAQRS 286 (312)
Q Consensus 262 ~Nr~~~V~~G~V~~LvelL~~~~~~ 286 (312)
..|.-+.+.|.+..+-.++...+..
T Consensus 246 HgreflaQeglIdlicnIIsGadsd 270 (524)
T KOG4413|consen 246 HGREFLAQEGLIDLICNIISGADSD 270 (524)
T ss_pred hhhhhcchhhHHHHHHHHhhCCCCC
Confidence 5778888899999888888755433
No 106
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.08 E-value=24 Score=28.96 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=58.2
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcC--CCChHHHHHHHHHHHHhhcC
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKE--PICPTATEASFVVVYHMITS 256 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~-~~~~~~Ig~~~g~i~~LV~ll~~--~~~~~a~~~Al~aL~~L~~~ 256 (312)
.+++.|-+=|++++...+..|..+|..+..-. ......+++. .++..|++++.. ..++...+.++..+.+....
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~-~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADK-EFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 36788888899999999999999999997433 3466677664 888889999976 45677888888888887543
No 107
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=75.92 E-value=6.5 Score=23.68 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 021419 184 MHCMVWFLKSGDLSRRRNTVLVLREVI 210 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls 210 (312)
+|.+...|+..+.+.|..|+..|-.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 688999999999999999999999885
No 108
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.85 E-value=92 Score=31.31 Aligned_cols=188 Identities=13% Similarity=0.106 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCC-----hh----HHHhccC
Q 021419 110 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLA-----GE----ALTYLGS 180 (312)
Q Consensus 110 ~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~-----~e----~k~~l~~ 180 (312)
..+.++..+|.--+ -=-.+++-++++.|+.+|.-.+ ..+.-..+..|.-|--.| ++ .-+.+++
T Consensus 103 d~IQ~mhvlAt~Pd-LYp~lveln~V~slL~LLgHeN-------tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd 174 (536)
T KOG2734|consen 103 DIIQEMHVLATMPD-LYPILVELNAVQSLLELLGHEN-------TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD 174 (536)
T ss_pred HHHHHHHhhhcChH-HHHHHHHhccHHHHHHHhcCCC-------chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh
Confidence 35666666665444 2235678888999999995432 234444555665552111 12 1233567
Q ss_pred CCCHHHHHHHHhcCC------HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCC-hHHHHHHHHHHHHh
Q 021419 181 ASSMHCMVWFLKSGD------LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPIC-PTATEASFVVVYHM 253 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs------~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~-~~a~~~Al~aL~~L 253 (312)
.+.++.++.-+..=+ ..+-.++..++.++....++.+..+.+. |++.-|++-++.... ..-...|..+|.-+
T Consensus 175 g~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLail 253 (536)
T KOG2734|consen 175 GQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAIL 253 (536)
T ss_pred ccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHH
Confidence 778888888776432 3344577888888888878877777565 888888875554311 23445566666555
Q ss_pred hcCCCCCcchHHHHHHcCcHHHHHHHhhhc---ccc-hhhhhh-------ccC---CHHHHHHHhhcCCc
Q 021419 254 ITSASAADKPIQKFVDMGLVSLLLETLVDA---QRS-LCEKPW-------VFS---TDFAAVITGEERPT 309 (312)
Q Consensus 254 ~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~---~~~-~~e~aL-------L~~---~~eGR~ai~~~~~~ 309 (312)
--.. +.|+...-....|..|++-|.-. ++. +-|.=+ ||+ -+++|+-+.+..|.
T Consensus 254 lq~s---~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGl 320 (536)
T KOG2734|consen 254 LQNS---DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGL 320 (536)
T ss_pred hccC---chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccH
Confidence 4433 36999999999999999999622 222 212222 555 36899888887764
No 109
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=75.70 E-value=39 Score=34.84 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=34.1
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC
Q 021419 104 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP 169 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~ 169 (312)
|..+..++-..|-..+|.+..-|+.-+ .++..++..+ ++.++.|+.++.-|+.
T Consensus 17 d~~~~~~~y~~il~~~kg~~k~K~Laa-----q~I~kffk~F--------P~l~~~Ai~a~~DLcE 69 (556)
T PF05918_consen 17 DKSQHEEDYKEILDGVKGSPKEKRLAA-----QFIPKFFKHF--------PDLQEEAINAQLDLCE 69 (556)
T ss_dssp GGGGGHHHHHHHHHGGGS-HHHHHHHH-----HHHHHHHCC---------GGGHHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHccCCHHHHHHHH-----HHHHHHHhhC--------hhhHHHHHHHHHHHHh
Confidence 434556788888889998876555432 3555666655 3568888887777755
No 110
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=75.10 E-value=21 Score=32.65 Aligned_cols=144 Identities=8% Similarity=0.126 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC-CCChhHHHhccCCCCHHHHH
Q 021419 110 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF-PLAGEALTYLGSASSMHCMV 188 (312)
Q Consensus 110 ~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~-~~~~e~k~~l~~~~~l~~lv 188 (312)
.|+.-++-++.+-+ .|+.+.++-+.-+|-.+|...+.. ......+-.++.++..|. .++.+-.+-+...+.+|...
T Consensus 119 naL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~--~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 119 NALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSN--SKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccC--CccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 47777777777554 788888888777777777433211 012234455666665553 33444455566778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhccchH------HHHHhhhhhchHHHHHHh-hcCCCChHHHHHHHHHHHHhhcCC
Q 021419 189 WFLKSGDLSRRRNTVLVLREVISSDHR------RVNMFLEIEGAIESLYTL-IKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 189 ~~L~~gs~~~r~~Aa~lL~~Ls~~~~~------~~~~Ig~~~g~i~~LV~l-l~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
+++..|+--+|.-|+.++-.+...+.. ..+......-++..+|.- +..+ +.+..|.++++-..||..+
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~-~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG-STRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHheeecCCH
Confidence 999999988999999888887655431 122222333455566633 3334 7799999999999999874
No 111
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=73.93 E-value=20 Score=30.59 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=54.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
....+..+|++.+.+.|-.++.++..+...++ .-..+....-.+..|+.+|+...++...+.|..+|..+..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45567788989999999999999998874432 2222234435899999999987677788888888888854
No 112
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=72.48 E-value=17 Score=31.28 Aligned_cols=84 Identities=24% Similarity=0.327 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHH
Q 021419 195 DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVS 274 (312)
Q Consensus 195 s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~ 274 (312)
++..|.|++.++-.|+-.-+ ..+ +..++.+...|+|+ +|..++.|+.+|.+|.... --+.+ .-.+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~v---e~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d----~ik~k---~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLV---EPYLPNLYKCLRDE-DPLVRKTALLVLSHLILED----MIKVK---GQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHH---HhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcC----ceeeh---hhhhH
Confidence 35678899999998863323 233 24688999999988 8999999999999997652 11211 12346
Q ss_pred HHHHHhhhcccchhhhhh
Q 021419 275 LLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 275 ~LvelL~~~~~~~~e~aL 292 (312)
.++.+|.|.+..+...|-
T Consensus 67 ~~l~~l~D~~~~Ir~~A~ 84 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLAR 84 (178)
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 667777776555544443
No 113
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=72.37 E-value=31 Score=33.25 Aligned_cols=123 Identities=13% Similarity=0.084 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCCChhHHHh-ccCCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 021419 156 VLEEILSTLTLLFPLAGEALTY-LGSASSMHCMVWFLKS--GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 232 (312)
Q Consensus 156 v~e~Al~iL~~L~~~~~e~k~~-l~~~~~l~~lv~~L~~--gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ 232 (312)
.+--|++.|..|.. +.+-|.+ .++..+-.+++.+|++ |..+-+-+...++--|+ .++...+.|-+....|..|++
T Consensus 165 Trlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aqdi~K~~dli~dli~ 242 (432)
T COG5231 165 TRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQDIDKMDDLINDLIA 242 (432)
T ss_pred HHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 45567788887754 4454554 4556677889999987 56677778887777774 556666777666778999999
Q ss_pred hhcCCCChHHHHHHHHHHHHhhc-CCCCCcchHHHHHHcCcHHHHHHHhhhc
Q 021419 233 LIKEPICPTATEASFVVVYHMIT-SASAADKPIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 233 ll~~~~~~~a~~~Al~aL~~L~~-~~~~~~~Nr~~~V~~G~V~~LvelL~~~ 283 (312)
+++...-....+-+..++.|+|. .+ ..-...+.-.|-+..-++.|.+.
T Consensus 243 iVk~~~keKV~Rlc~~Iv~n~~dK~p---K~~I~~~lll~~~~k~vq~L~er 291 (432)
T COG5231 243 IVKERAKEKVLRLCCGIVANVLDKSP---KGYIFSPLLLNDISKCVQVLLER 291 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc---cchhhhhHhhcchHHHHHHHHhc
Confidence 99876555677888889999987 33 24677788888788888888643
No 114
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.12 E-value=34 Score=28.71 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=57.9
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
.++..|.+=|.++++.....|..+|..+..- .......|++. +++..|++++.+..++...+..+..+.....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask-~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR-DFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4788888889999999999999999999743 23455677565 9999999999875577777778888877754
No 115
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=69.71 E-value=2.2 Score=39.25 Aligned_cols=63 Identities=5% Similarity=-0.119 Sum_probs=47.1
Q ss_pred cccchhhhhhHHHhhhhccc--chhhHHhhHHH-HhhC--CCcccccccccCCCCccccchhh-hhhhch
Q 021419 4 KRHVRLINLAKWLVESAWVA--LRLFQERCEEE-LLWA--AEMIKIKAQDLKGKEVKVNTSLL-YQQTKF 67 (312)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~er~~~e-~~~G--~~TCP~T~Q~L~~~~l~PN~tLr-Iq~Wc~ 67 (312)
-..++=||+||+.+..|++. =+++|+|-+|+ +..+ -.-||+-+-. .-.-+.|-|... =.-||.
T Consensus 173 e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~-~~~~~~~~~l~~d~el~~k 241 (262)
T KOG2979|consen 173 EVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE-NPYYIQPGHLDEDKELQQK 241 (262)
T ss_pred hhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC-ccccccccccCchHHHHHH
Confidence 35678899999999999999 89999999988 5666 4568988766 123466666666 355654
No 116
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=69.16 E-value=41 Score=27.64 Aligned_cols=73 Identities=8% Similarity=0.012 Sum_probs=54.6
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChH-HHHHHHHHHHHhhc
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPT-ATEASFVVVYHMIT 255 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~-a~~~Al~aL~~L~~ 255 (312)
.+++.|-+=|++++......|..+|..+..- .......|++. +++..|++++.+..+.. ..+..+..+..-..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~-~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK-EFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3677788888899999999999999999743 34556677555 99999999998763333 56666666666643
No 117
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=69.09 E-value=2.3 Score=37.55 Aligned_cols=55 Identities=11% Similarity=-0.058 Sum_probs=41.3
Q ss_pred chhhhhhHHHhhhhccc-chh-hHHhhHHHHhh----------------CCCcccccccccCCCCccccchhh
Q 021419 7 VRLINLAKWLVESAWVA-LRL-FQERCEEELLW----------------AAEMIKIKAQDLKGKEVKVNTSLL 61 (312)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~~~-~~er~~~e~~~----------------G~~TCP~T~Q~L~~~~l~PN~tLr 61 (312)
.+-||.-....+||+++ =++ |=..+...|+. +..+||+-+.++...+++|.+.-.
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg 90 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG 90 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence 46788888999999987 555 55555544532 346899999999998999987644
No 118
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.20 E-value=30 Score=36.56 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=65.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
++..+-.+|.+.....|--|.--+..|++. ....+.+ +.. .+.++..|+...+-..++.|+..||.+|.. +
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~dav-K~h--~d~Ii~sLkterDvSirrravDLLY~mcD~-----~ 400 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAV-KKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-----S 400 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHH-HHH--HHHHHHHhccccchHHHHHHHHHHHHHhch-----h
Confidence 566677777777777777777777777655 3233444 321 556667777333667899999999999998 5
Q ss_pred hHHHHHHcCcHHHHHHHhhhcccchhhh
Q 021419 263 PIQKFVDMGLVSLLLETLVDAQRSLCEK 290 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~~~~~~e~ 290 (312)
|...+| ..|++.|..+|.++-|.
T Consensus 401 Nak~IV-----~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 401 NAKQIV-----AELLQYLETADYSIREE 423 (938)
T ss_pred hHHHHH-----HHHHHHHhhcchHHHHH
Confidence 988865 56888887776555544
No 119
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=66.98 E-value=77 Score=26.73 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCCChhH-HHhccCCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 021419 156 VLEEILSTLTLLFPLAGEA-LTYLGSASSMHCMVWFLK--SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 232 (312)
Q Consensus 156 v~e~Al~iL~~L~~~~~e~-k~~l~~~~~l~~lv~~L~--~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ 232 (312)
..-.++.+|..|.+...+. -.++...|+++.+..... +.+......++.+|- .+..+...+..|.+ -.++-|-+
T Consensus 59 ~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~-aAc~d~~~r~~I~~--~~~~~L~~ 135 (157)
T PF11701_consen 59 SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLS-AACIDKSCRTFISK--NYVSWLKE 135 (157)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHH-HHTTSHHHHHCCHH--HCHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHH-HHHccHHHHHHHHH--HHHHHHHH
Confidence 3566777777777766554 557778999999999998 445445444444444 43454677777744 46788888
Q ss_pred hhcCCCChH-HHHHHHHHHH
Q 021419 233 LIKEPICPT-ATEASFVVVY 251 (312)
Q Consensus 233 ll~~~~~~~-a~~~Al~aL~ 251 (312)
+++.+.+.. .+-.|+.+|.
T Consensus 136 ~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 136 LYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HTTTCC-HH-CHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHHh
Confidence 886553444 3444555443
No 120
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=66.01 E-value=52 Score=27.44 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=54.0
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchHHHHHhhhhhchHHHHHHhhcC-----CCChHHHHHHHHHHHHhh
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVIS-SDHRRVNMFLEIEGAIESLYTLIKE-----PICPTATEASFVVVYHMI 254 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~-~~~~~~~~Ig~~~g~i~~LV~ll~~-----~~~~~a~~~Al~aL~~L~ 254 (312)
.++..|.+=|++++......|..+|..+.. ........|++. +++..|++++.. ..++..++..+..+..-.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~-~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKF-RFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 477888888999999999999999999974 334566778665 999999999963 134566666666666554
No 121
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=65.66 E-value=67 Score=29.19 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=91.4
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhcC--CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhc-cC
Q 021419 104 DQTGGRDLVAKIKKWIKESERNKRCIVDYG--AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYL-GS 180 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~aG--~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l-~~ 180 (312)
+++.+.-++.=+|-++.. ...-..+...+ ....+..++...... .....+=-++++|.|++. +...+..+ ..
T Consensus 76 p~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~ 150 (268)
T PF08324_consen 76 PPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSS---SPPANQMLALRLLANLFS-HPPGRQLLLSH 150 (268)
T ss_dssp -CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTT---SSHHHHHHHHHHHHHHTT-SCCCHHHHHCT
T ss_pred CCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCC---CcHHHHHHHHHHHHHhhC-CCccHHHHHhc
Confidence 344455566555555554 33444555553 356666666443211 134456668899999965 44444543 33
Q ss_pred CC-CHHHHHHHHhcC----CHHHHHHHHHHHHHHhccchHHHHHhh---hhhchHHHHHHh-hcCCCChHHHHHHHHHHH
Q 021419 181 AS-SMHCMVWFLKSG----DLSRRRNTVLVLREVISSDHRRVNMFL---EIEGAIESLYTL-IKEPICPTATEASFVVVY 251 (312)
Q Consensus 181 ~~-~l~~lv~~L~~g----s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig---~~~g~i~~LV~l-l~~~~~~~a~~~Al~aL~ 251 (312)
.+ .+-..+.-+... +...|..++.++++++.... ....+ .. ..+..++.+ .....++++.--++.+|-
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~--~~~~~~~~~~-~ll~~i~~~~~~~~~d~Ea~~R~LvAlG 227 (268)
T PF08324_consen 151 FDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLH--KNRSDEEWQS-ELLSSIIEVLSREESDEEALYRLLVALG 227 (268)
T ss_dssp HHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHH--HCTS-CCHHH-HHHHHHHHHCHCCHTSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHH--hcCCChHHHH-HHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 33 333333333333 56789999999999973311 11111 11 356666673 434357889999999999
Q ss_pred HhhcCCCCCcchHHHHHH-cCcHHHHHH
Q 021419 252 HMITSASAADKPIQKFVD-MGLVSLLLE 278 (312)
Q Consensus 252 ~L~~~~~~~~~Nr~~~V~-~G~V~~Lve 278 (312)
+|+..+ .....+.+ .|+-..+-.
T Consensus 228 tL~~~~----~~~~~~~~~l~~~~~~~~ 251 (268)
T PF08324_consen 228 TLLSSS----DSAKQLAKSLDVKSVLSK 251 (268)
T ss_dssp HHHCCS----HHHHHHCCCCTHHHHHHH
T ss_pred HHhccC----hhHHHHHHHcChHHHHHH
Confidence 999774 56666665 354444433
No 122
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=63.87 E-value=52 Score=25.63 Aligned_cols=56 Identities=7% Similarity=0.106 Sum_probs=41.6
Q ss_pred chHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHH--cCcHHHHHHHhhhcccch
Q 021419 225 GAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVD--MGLVSLLLETLVDAQRSL 287 (312)
Q Consensus 225 g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~--~G~V~~LvelL~~~~~~~ 287 (312)
.+++.++..+.|. +++.+-.|..+|||++... +..+.. ......|.++..|.+.+|
T Consensus 27 ~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~------~~~~l~~f~~IF~~L~kl~~D~d~~V 84 (97)
T PF12755_consen 27 EILPPVLKCFDDQ-DSRVRYYACEALYNISKVA------RGEILPYFNEIFDALCKLSADPDENV 84 (97)
T ss_pred HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCCchhH
Confidence 4788888889887 8899999999999998763 445544 246667777776665444
No 123
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=63.33 E-value=1.1e+02 Score=28.61 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=22.0
Q ss_pred chHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 225 GAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 225 g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
..++.|...+++. .......|..+|..+...
T Consensus 180 ~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 180 EAIPLLIELLEDE-DADVRRAAASALGQLGSE 210 (335)
T ss_pred hhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcc
Confidence 5677777777766 556777777777777654
No 124
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.97 E-value=93 Score=32.18 Aligned_cols=73 Identities=7% Similarity=0.067 Sum_probs=56.2
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCC
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
..++.+.+.|.+...++|..+..=+..|-...+. .... -...++.-|++-|.|. +...+.-++..|-++|.++
T Consensus 336 ~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~-h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 336 SIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLV-HNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhh-hccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCc
Confidence 4567777777788899999998888877544332 2222 2236899999999988 7789999999999999875
No 125
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=61.87 E-value=37 Score=29.82 Aligned_cols=125 Identities=10% Similarity=0.106 Sum_probs=50.6
Q ss_pred hhHHHHhcCCHHHHHHHhhcccccc-----------cchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhc
Q 021419 125 NKRCIVDYGAVSVLAAAFESFSKTC-----------LDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKS 193 (312)
Q Consensus 125 nR~~l~~aG~v~~Lv~lL~s~~~~~-----------~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~ 193 (312)
+.+.|...|+...++.+|...-... .....++...+...|..++..+.+|+..+... ++.++..+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 4456888899999999996532110 01124667778888888877778888776532 3333333333
Q ss_pred CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC-CCChHHHHHHHHHHHHhhcCC
Q 021419 194 GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE-PICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 194 gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~-~~~~~a~~~Al~aL~~L~~~~ 257 (312)
.....-..++.+|.++-..+.+.+..+.+. -|..++.+++. +..++ =+..|..+|...
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~--~I~~~i~ll~~~gr~~~----~L~~L~~lc~~~ 171 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISEE--HIEKFIELLRKHGRQPR----YLDFLSSLCVCN 171 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT----------------------------------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhHH--HHHHHHHHHHHcCCChH----HHHHHhhhcccC
Confidence 322222467788888876666777777543 59999999986 42333 667888888764
No 126
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.96 E-value=48 Score=27.35 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=53.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCCChH---HHHHHHHHHHHhh
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPICPT---ATEASFVVVYHMI 254 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~-~~~~~~Ig~~~g~i~~LV~ll~~~~~~~---a~~~Al~aL~~L~ 254 (312)
++..|-+=|+++++.....|..+|..+..-. +.....+++. .++..|++++.+..... ..+.++..|....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~-~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK-EFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH-HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 5677777788999999999999999997433 4566778665 89999999998653433 4556666666553
No 127
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.84 E-value=41 Score=27.48 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=50.1
Q ss_pred CCHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 182 SSMHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 182 ~~l~~lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
..+..|+.+|. +.+...-.-|+-=|-++...-|.-+..+.+ .|+-.-++.++.++ ++..+..|+.++..+-.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 36899999993 334444444555555555455666777744 48889999999877 89999999999987754
No 128
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=60.05 E-value=32 Score=25.49 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcc----cchhhhhh--ccCCHHHHHHHhhc
Q 021419 243 TEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQ----RSLCEKPW--VFSTDFAAVITGEE 306 (312)
Q Consensus 243 ~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~----~~~~e~aL--L~~~~eGR~ai~~~ 306 (312)
.|.|+=++-|+++++ ....-+-+.++|+.++++-...+ |+++=-+| ++++.+|++.+.+.
T Consensus 4 lKaaLWaighIgss~----~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP----LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcCh----HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 578999999998875 45555555789999999987653 45555555 89999999988664
No 129
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.79 E-value=35 Score=37.92 Aligned_cols=130 Identities=16% Similarity=0.222 Sum_probs=86.6
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhcc
Q 021419 134 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLK-SGDLSRRRNTVLVLREVISS 212 (312)
Q Consensus 134 ~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~-~gs~~~r~~Aa~lL~~Ls~~ 212 (312)
+.|+++...+.++. .++++++..|--+|.-|+..+.+- -...++.++.+|. +.++-.|-|++..+-.++-.
T Consensus 920 f~piv~e~c~n~~~---~sdp~Lq~AAtLaL~klM~iSa~f-----ces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL---FSDPELQAAATLALGKLMCISAEF-----CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHhcCCCc---CCCHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 57777777755432 124667766655666554433221 1246888888887 45788899999888888532
Q ss_pred chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHH-cCcHHHHHHHhhhcccch
Q 021419 213 DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVD-MGLVSLLLETLVDAQRSL 287 (312)
Q Consensus 213 ~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~-~G~V~~LvelL~~~~~~~ 287 (312)
-+. .+ + ..-+.|...|+|. ++..++.|+.+|.||-... |++ -|.++...-+|.|.+..+
T Consensus 992 fpn---li-e--~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd---------miKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen 992 FPN---LI-E--PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND---------MIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred ccc---cc-c--hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh---------hhHhcccHHHHHHHhcCCcHHH
Confidence 232 23 2 3557788888887 8899999999999998763 333 388888888887765443
No 130
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=59.10 E-value=2.8 Score=40.78 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=37.4
Q ss_pred hhhhHHHhhhhccc-chhhHHhhHH-HHhhCCCcccccccccCCCCccc
Q 021419 10 INLAKWLVESAWVA-LRLFQERCEE-ELLWAAEMIKIKAQDLKGKEVKV 56 (312)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~er~~~-e~~~G~~TCP~T~Q~L~~~~l~P 56 (312)
|-|+-+=..|||-. ++..||=..| -|+.-|.|=|+|+|+|...||++
T Consensus 43 C~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 43 CSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIK 91 (518)
T ss_pred ceeccccccCcccccCCcEEeeehhhHHHHHcCCCCCCCCcccccccee
Confidence 66777778899955 6666665554 48888889999999999999987
No 131
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.00 E-value=1.6e+02 Score=31.65 Aligned_cols=135 Identities=14% Similarity=0.166 Sum_probs=64.2
Q ss_pred CCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCC
Q 021419 103 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 182 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~ 182 (312)
.||.-|.+.++-|+-+.+.+.+...+|.+ +|..+.......-...+. ++-+.+..+..+ ..+...+. +
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnA-ILYE~V~TI~~I-~~~~~Lrv-l---- 313 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNA-ILYECVRTIMDI-RSNSGLRV-L---- 313 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhH-HHHHHHHHHHhc-cCCchHHH-H----
Confidence 36777788888888888877665555543 555555332110001122 232322222211 11111111 1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
++..|-+||.+.+-..|--|...|..+...++.....- + ..++.-|+|. ++..++.|+..+|.|.-.
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-r-----~tIleCL~Dp-D~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-R-----STILECLKDP-DVSIKRRALELSYALVNE 380 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-H-----HHHHHHhcCC-cHHHHHHHHHHHHHHhcc
Confidence 45555556655555555555555555544433322222 1 1233444444 555566666666666544
No 132
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=58.72 E-value=52 Score=31.16 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=40.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-c--hHHHHHhhhhhchHHHHHHhhcCCC-ChHHHHHHHHHHHH
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISS-D--HRRVNMFLEIEGAIESLYTLIKEPI-CPTATEASFVVVYH 252 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~--~~~~~~Ig~~~g~i~~LV~ll~~~~-~~~a~~~Al~aL~~ 252 (312)
.++.+.+.+++|+.+++..|+.++-=++-. . ++..+.. + .+.+.|.+++.++. ++.++..++.+|--
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai 157 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-E--ELKPVLKRILTDSSASPKARAACLEALAI 157 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-H--HHHHHHHHHHhCCccchHHHHHHHHHHHH
Confidence 578888999999888888777766544311 1 2233333 2 46788888888762 33443444444433
No 133
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=57.49 E-value=1.4e+02 Score=26.39 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=67.6
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCC--CC--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 021419 133 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSA--SS--MHCMVWFLKSGDLSRRRNTVLVLRE 208 (312)
Q Consensus 133 G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~--~~--l~~lv~~L~~gs~~~r~~Aa~lL~~ 208 (312)
.++..|+.++..+.+..... ..-.+....+|.+++. .++.|..+.++ .. |..++-++.+.+..-|..++.+|.+
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~-~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrN 129 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNK-KDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRN 129 (192)
T ss_pred HHHHHHHHHHHcCCcccCCC-CcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 45677777775521110011 1235566678999843 57788876653 34 7788888888899999999999999
Q ss_pred HhccchHHHHHhhhh-hchHHHHHHhhc
Q 021419 209 VISSDHRRVNMFLEI-EGAIESLYTLIK 235 (312)
Q Consensus 209 Ls~~~~~~~~~Ig~~-~g~i~~LV~ll~ 235 (312)
.+-..+.+...++.. -++++.|+--|.
T Consensus 130 ccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 130 CCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 986656666677542 367777776665
No 134
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=56.80 E-value=47 Score=25.62 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCC
Q 021419 184 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
+......|.+..+..|.++...|..|..... ..+...++++.-+...|++. ++-.--+|+..|..|+...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHC
Confidence 4455666777778899999999999975533 23335567888888999887 6667777889999998764
No 135
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=56.78 E-value=1.1e+02 Score=25.06 Aligned_cols=101 Identities=11% Similarity=0.003 Sum_probs=60.8
Q ss_pred CCCccccchhh-hhhhchhhhhccccCCCCCCCCCChHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhch-hhhHH
Q 021419 51 GKEVKVNTSLL-YQQTKFNLQREKSEGYAKLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRC 128 (312)
Q Consensus 51 ~~~l~PN~tLr-Iq~Wc~~~~~n~~~gv~tp~~p~~~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~-~nR~~ 128 (312)
+...+|-+.+. |.+|+. .+... ..+-..-|.++|.. .++..+.++|+=|..++.... .-+++
T Consensus 13 d~~p~pgy~~~Eia~~t~---~s~~~---------~~ei~d~L~kRL~~----~~~hVK~K~Lrilk~l~~~G~~~f~~~ 76 (122)
T cd03572 13 DDEPTPGYLYEEIAKLTR---KSVGS---------CQELLEYLLKRLKR----SSPHVKLKVLKIIKHLCEKGNSDFKRE 76 (122)
T ss_pred CCCCCchHHHHHHHHHHH---cCHHH---------HHHHHHHHHHHhcC----CCCcchHHHHHHHHHHHhhCCHHHHHH
Confidence 34589999999 999987 32110 01123445666654 345666789999999887654 56666
Q ss_pred HHhc-CCHHHHHHHhhccc--ccccchhHHHHHHHHHHHHhcC
Q 021419 129 IVDY-GAVSVLAAAFESFS--KTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 129 l~~a-G~v~~Lv~lL~s~~--~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
+... -.|..+..+=...+ .++ +.+..|++.|=.++..+.
T Consensus 77 ~~~~~~~Ik~~~~f~g~~Dp~~Gd-~~~~~VR~~A~El~~~if 118 (122)
T cd03572 77 LQRNSAQIRECANYKGPPDPLKGD-SLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHhHHHHHHHHHcCCCCCcccCc-chhHHHHHHHHHHHHHHh
Confidence 6665 45555555443221 111 345677887777776653
No 136
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=56.20 E-value=37 Score=34.99 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCc
Q 021419 193 SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGL 272 (312)
Q Consensus 193 ~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~ 272 (312)
+|+.++|.-|+..|-.-...=++.. + .+|..+++|..|. +...++.|++.|-.+|... +++..++
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~----~--~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~---~~~v~kv----- 97 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQ----E--EAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDN---PEHVSKV----- 97 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGH----H--HHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T-----T-HHHH-----
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhH----H--HHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhH---HHHHhHH-----
Confidence 6888999999999988754434322 2 5789999999877 8889999999999999863 3677774
Q ss_pred HHHHHHHhhh
Q 021419 273 VSLLLETLVD 282 (312)
Q Consensus 273 V~~LvelL~~ 282 (312)
+.+|+++|..
T Consensus 98 aDvL~QlL~t 107 (556)
T PF05918_consen 98 ADVLVQLLQT 107 (556)
T ss_dssp HHHHHHHTT-
T ss_pred HHHHHHHHhc
Confidence 5678888864
No 137
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=56.03 E-value=41 Score=27.43 Aligned_cols=110 Identities=13% Similarity=0.038 Sum_probs=64.8
Q ss_pred hhHHhhHHHHhhCCCcccccccccCCCCccccchhhhhhhchhhhhccccCCCCCCCCCChHHHHHHHHHHHhcccCCCc
Q 021419 26 LFQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYAKLGIPMSSVEVLEINSKITAACKSEDQ 105 (312)
Q Consensus 26 ~~~er~~~e~~~G~~TCP~T~Q~L~~~~l~PN~tLrIq~Wc~~~~~n~~~gv~tp~~p~~~~~v~~ll~~l~~~~~~~d~ 105 (312)
++||+|.-|-.+|+- +..|=|+=- .=|.+|..+=....+ .-+..|++-|..+ .|+
T Consensus 4 tsfdeY~~El~sg~L------------~WSP~H~se-~FW~ENa~kf~~~~~---------~llk~L~~lL~~s---~d~ 58 (119)
T PF11698_consen 4 TSFDEYLSELESGHL------------EWSPVHKSE-KFWRENADKFEENNF---------ELLKKLIKLLDKS---DDP 58 (119)
T ss_dssp -HHHHHHHHHHHT-----------------GGGG-H-HHHHHHSGGGSSGGG---------HHHHHHHHHH-SH---HHH
T ss_pred CcHHHHHHHHhcCCc------------cccCCCCCc-cHHHHHHHHHHHccc---------HHHHHHHHHHccC---CCc
Confidence 478888888887742 334555422 335543111011111 1233344444222 344
Q ss_pred hhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021419 106 TGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 106 ~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
....=|...|-.+++..+.-|..+.+.|+-..+..++... +.+|+.+||-++..|
T Consensus 59 ~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-------d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 59 TTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-------DPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-------SHHHHHHHHHHHHHH
T ss_pred ceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-------CHHHHHHHHHHHHHH
Confidence 4444488999999999999888888889999999999654 468999998877644
No 138
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=55.41 E-value=1.3e+02 Score=29.84 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhh
Q 021419 157 LEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLI 234 (312)
Q Consensus 157 ~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll 234 (312)
+--+++.|..|.. .++.|..+...+....++..|.++ +..-+-+....+--| +.++...+.+ ..-+.|+.|++++
T Consensus 174 ~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlL-tFn~~~ae~~-~~~~li~~L~~Iv 250 (442)
T KOG2759|consen 174 IQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLL-TFNPHAAEKL-KRFDLIQDLSDIV 250 (442)
T ss_pred HHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHh-hcCHHHHHHH-hhccHHHHHHHHH
Confidence 3444555655533 356677777778888888888443 666666677777766 4666666777 5558999999999
Q ss_pred cCCCChHHHHHHHHHHHHhhcCCCCCc---chHHHHHHcCcHHHHHHHhh
Q 021419 235 KEPICPTATEASFVVVYHMITSASAAD---KPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 235 ~~~~~~~a~~~Al~aL~~L~~~~~~~~---~Nr~~~V~~G~V~~LvelL~ 281 (312)
++..-....+-.+.++.|+++..+.++ .....|+..++.+.+ +.|.
T Consensus 251 k~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l-~~L~ 299 (442)
T KOG2759|consen 251 KESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTL-QSLE 299 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHH-HHHH
Confidence 987566788899999999988642111 244677776665554 4443
No 139
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.07 E-value=37 Score=35.88 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 021419 153 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 232 (312)
Q Consensus 153 ~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ 232 (312)
++.++--|++.+..+-. +.-- .-...++...|+.++..+|.-|+..+.++=..+.+. . ...|++..|-.
T Consensus 99 np~iR~lAlrtm~~l~v--~~i~-----ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~---~-~~~gl~~~L~~ 167 (734)
T KOG1061|consen 99 NPLIRALALRTMGCLRV--DKIT-----EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDL---V-EDSGLVDALKD 167 (734)
T ss_pred CHHHHHHHhhceeeEee--hHHH-----HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhh---c-cccchhHHHHH
Confidence 56666667776665521 1111 125678888999999999999999988884343332 2 44599999999
Q ss_pred hhcCCCChHHHHHHHHHHHHhhcCC
Q 021419 233 LIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 233 ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
++.|. +|..+.+|+.+|..+...+
T Consensus 168 ll~D~-~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 168 LLSDS-NPMVVANALAALSEIHESH 191 (734)
T ss_pred HhcCC-CchHHHHHHHHHHHHHHhC
Confidence 99977 8999999999999997654
No 140
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=53.63 E-value=1.5e+02 Score=32.38 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=90.7
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHH-HHHhcCCCChhHHHhcc-C-CCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 021419 133 GAVSVLAAAFESFSKTCLDEHVSVLEEILS-TLTLLFPLAGEALTYLG-S-ASSMHCMVWFLKSGDLSRRRNTVLVLREV 209 (312)
Q Consensus 133 G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~-iL~~L~~~~~e~k~~l~-~-~~~l~~lv~~L~~gs~~~r~~Aa~lL~~L 209 (312)
..+|.|++-+... ++. .....-.+|+ +|.++ | +.++. . +..+|.+..-|.-.+...|..+..++.-+
T Consensus 867 ~ivP~l~~~~~t~-~~~---~K~~yl~~LshVl~~v-P-----~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~ 936 (1030)
T KOG1967|consen 867 DIVPILVSKFETA-PGS---QKHNYLEALSHVLTNV-P-----KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPML 936 (1030)
T ss_pred hhHHHHHHHhccC-Ccc---chhHHHHHHHHHHhcC-C-----HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHH
Confidence 4688888888632 221 1223334444 33332 2 34443 3 67889999999888999999999999887
Q ss_pred hccchHH-HHHhhhhhchHHHHHHhhcCCCC--hHHHHHHHHHHHHhhc-CCCCCcchHHHHHHcCcHHHHHHHhhhccc
Q 021419 210 ISSDHRR-VNMFLEIEGAIESLYTLIKEPIC--PTATEASFVVVYHMIT-SASAADKPIQKFVDMGLVSLLLETLVDAQR 285 (312)
Q Consensus 210 s~~~~~~-~~~Ig~~~g~i~~LV~ll~~~~~--~~a~~~Al~aL~~L~~-~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~ 285 (312)
....+.. -+-+ + -+++.|..+-++..+ ...+.+|+.+|..|.. .+ -++-.--+--++.+|+..|.|..|
T Consensus 937 l~~~~tL~t~~~-~--Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P----~~~l~~fr~~Vl~al~k~LdDkKR 1009 (1030)
T KOG1967|consen 937 LTESETLQTEHL-S--TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLP----TKSLLSFRPLVLRALIKILDDKKR 1009 (1030)
T ss_pred HHhccccchHHH-h--HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCC----CcccccccHHHHHHhhhccCcHHH
Confidence 6443321 2223 2 368888888766532 5678899999999976 33 344444555688899999987555
Q ss_pred chhhhh
Q 021419 286 SLCEKP 291 (312)
Q Consensus 286 ~~~e~a 291 (312)
-+-+.|
T Consensus 1010 lVR~eA 1015 (1030)
T KOG1967|consen 1010 LVRKEA 1015 (1030)
T ss_pred HHHHHH
Confidence 444444
No 141
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=53.32 E-value=1.6e+02 Score=25.94 Aligned_cols=94 Identities=9% Similarity=0.039 Sum_probs=63.9
Q ss_pred CHHHHHHHHhcC------CHHHHHHHHHHHHHHhccchHHHHHhhhhhch--HHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 021419 183 SMHCMVWFLKSG------DLSRRRNTVLVLREVISSDHRRVNMFLEIEGA--IESLYTLIKEPICPTATEASFVVVYHMI 254 (312)
Q Consensus 183 ~l~~lv~~L~~g------s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~--i~~LV~ll~~~~~~~a~~~Al~aL~~L~ 254 (312)
.|..++..+..| ....-.+.+.++-++|...+...-.+....+. +..|+.++... ++--++-++.++.|.|
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhh
Confidence 688888887773 23455678999999987744333444333344 77788887766 7777778999999999
Q ss_pred cCCCCCcchHHHHHHc---CcHHHHHHHhh
Q 021419 255 TSASAADKPIQKFVDM---GLVSLLLETLV 281 (312)
Q Consensus 255 ~~~~~~~~Nr~~~V~~---G~V~~LvelL~ 281 (312)
-.. .+...+... +.++.|+-.|.
T Consensus 132 Fd~----~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 132 FDT----DSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred ccH----hHHHHhcCchhhhhHHHHHhhcc
Confidence 875 566777764 34444444443
No 142
>PF04641 Rtf2: Rtf2 RING-finger
Probab=53.20 E-value=4.2 Score=37.53 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=37.4
Q ss_pred ccchhhhhhHHHhh--hhccc---chh-hHHhhHHHHhhCCCcccccccccCCCCccc
Q 021419 5 RHVRLINLAKWLVE--SAWVA---LRL-FQERCEEELLWAAEMIKIKAQDLKGKEVKV 56 (312)
Q Consensus 5 ~~~~~~~~~~~~~~--~~~~~---~~~-~~er~~~e~~~G~~TCP~T~Q~L~~~~l~P 56 (312)
--.|.||+|...|. .+||. -+. +-|+.-.|+. ....||+++++....|+||
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 44689999999995 34533 344 6677766775 4567999999999888765
No 143
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=53.00 E-value=1.8e+02 Score=27.43 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC--CCCCc
Q 021419 184 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS--ASAAD 261 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~--~~~~~ 261 (312)
|.-.+.-|...+...|++|...|..+.......-..-....-++..+.+.++.| ..+-...|++++--+|.. . +
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~---g 120 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGA---G 120 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCC---C
Confidence 445555566677899999999999886443211112223335788899999887 335555566666555544 2 2
Q ss_pred chHHHHHHcCcHHHHHHHhhhcccc
Q 021419 262 KPIQKFVDMGLVSLLLETLVDAQRS 286 (312)
Q Consensus 262 ~Nr~~~V~~G~V~~LvelL~~~~~~ 286 (312)
.....+.+ ...++|...+.+.+..
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~ 144 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSAS 144 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccc
Confidence 45566665 4888888888876543
No 144
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=51.37 E-value=1.4e+02 Score=27.86 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=13.4
Q ss_pred CCHHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 021419 182 SSMHCMVWFLKS-GDLSRRRNTVLVLREV 209 (312)
Q Consensus 182 ~~l~~lv~~L~~-gs~~~r~~Aa~lL~~L 209 (312)
..++.++..|.+ .+...|..|+..|..+
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 345555555542 4444555555444443
No 145
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.59 E-value=1.3e+02 Score=31.82 Aligned_cols=142 Identities=14% Similarity=0.203 Sum_probs=91.3
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhH--HHhccCC--CCHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 021419 134 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEA--LTYLGSA--SSMHCMVWFLKSGDLSRRRNTVLVLREV 209 (312)
Q Consensus 134 ~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~--k~~l~~~--~~l~~lv~~L~~gs~~~r~~Aa~lL~~L 209 (312)
..|.|..+|.+.+ -..+|-|+.+|...+.++.+- .+...++ -.||.+..+.++.++..|.+|+..+-..
T Consensus 129 lLp~L~~~L~s~d-------~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 129 LLPQLCELLDSPD-------YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred HHHHHHHHhcCCc-------ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 5688888887653 135788888888776533221 1122222 2689999999999999999999988776
Q ss_pred hccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHc--CcHHHHHHHhhhcccch
Q 021419 210 ISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM--GLVSLLLETLVDAQRSL 287 (312)
Q Consensus 210 s~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~--G~V~~LvelL~~~~~~~ 287 (312)
.-... ...+-....+++.|-.+-.|. +|..+|.--.+|..|...+ -.+++-. |.|+-.+..-.|.+..+
T Consensus 202 i~~~~--qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr------~dkl~phl~~IveyML~~tqd~dE~V 272 (885)
T KOG2023|consen 202 IIIQT--QALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVR------PDKLVPHLDNIVEYMLQRTQDVDENV 272 (885)
T ss_pred eecCc--HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhc------HHhcccchHHHHHHHHHHccCcchhH
Confidence 43322 223334456899999988766 8888888888888887663 2333332 34555554444544444
Q ss_pred hhhh
Q 021419 288 CEKP 291 (312)
Q Consensus 288 ~e~a 291 (312)
+-.|
T Consensus 273 ALEA 276 (885)
T KOG2023|consen 273 ALEA 276 (885)
T ss_pred HHHH
Confidence 4333
No 146
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.35 E-value=4e+02 Score=30.06 Aligned_cols=161 Identities=11% Similarity=0.077 Sum_probs=85.2
Q ss_pred hhhhHHHHHHHHHHHhch-hhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccC---C
Q 021419 106 TGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS---A 181 (312)
Q Consensus 106 ~~~~~al~~l~~lak~s~-~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~---~ 181 (312)
..+...++-+..+-+..+ .+.. +...-+.++++.. ... +...+..|...|..+... .+....++ +
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e~~~-~i~k~I~EvIL~~-Ke~-------n~~aR~~Af~lL~~i~~i--~~~~d~g~e~~~ 780 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAEHCD-LIPKLIPEVILSL-KEV-------NVKARRNAFALLVFIGAI--QSSLDDGNEPAS 780 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHhc-ccc-------cHHHHhhHHHHHHHHHHH--HhhhcccccchH
Confidence 334556666777766665 2222 2222233344333 332 356678888888776410 00011121 2
Q ss_pred CCHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc---CCCChHHHHHHHHHHHHhhcC
Q 021419 182 SSMHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK---EPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 182 ~~l~~lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~---~~~~~~a~~~Al~aL~~L~~~ 256 (312)
..|..++.+|.-| .-+.+.-|.. |..+...-.+.+..+ +. +.++.++..+. .+.++.-+++|+..+.-++..
T Consensus 781 ~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~l-d~-~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 781 AILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNIL-DD-ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccc-cH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence 3788888888887 3344444443 555543334555555 43 56666665544 234889999999999988764
Q ss_pred CCCCcchHHHHHHcCcHHHHHHHhhhc
Q 021419 257 ASAADKPIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 257 ~~~~~~Nr~~~V~~G~V~~LvelL~~~ 283 (312)
- +.-..+.-.--.++.++.++.+.
T Consensus 858 ~---pe~~l~~~~~~LL~sll~ls~d~ 881 (1176)
T KOG1248|consen 858 F---PEECLSPHLEELLPSLLALSHDH 881 (1176)
T ss_pred C---CHHHHhhhHHHHHHHHHHHHHhh
Confidence 3 12111111112556666655553
No 147
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.03 E-value=3.2e+02 Score=29.30 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHh
Q 021419 156 VLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLK-SGDLSRRRNTVLVLREVI 210 (312)
Q Consensus 156 v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~-~gs~~~r~~Aa~lL~~Ls 210 (312)
++--|+.-++.|+. .+.+.+.+... .+.++..|+ ..+...|.-|+-+|+..+
T Consensus 345 iRYLaLEsm~~L~s-s~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 345 IRYLALESMCKLAS-SEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred chhhhHHHHHHHHh-ccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 34445555555543 23333333322 778889998 569999999999999996
No 148
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=46.51 E-value=3.6e+02 Score=28.00 Aligned_cols=157 Identities=16% Similarity=0.138 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC--CCh--------------
Q 021419 109 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP--LAG-------------- 172 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~--~~~-------------- 172 (312)
..++.-+..++...+. .--.....++|.|...|-.+ ++++++.+..+|..+.. .+.
T Consensus 272 ~aslellg~m~~~ap~-qLs~~lp~iiP~lsevl~DT-------~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 272 MASLELLGAMADCAPK-QLSLCLPDLIPVLSEVLWDT-------KPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALA 343 (569)
T ss_pred HHHHHHHHHHHHhchH-HHHHHHhHhhHHHHHHHccC-------CHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 4466666666654442 22234447899999888544 46677777766655432 111
Q ss_pred -------hH-----HHhc---cCCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHh
Q 021419 173 -------EA-----LTYL---GSASSMHCMVWFLKSG----DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTL 233 (312)
Q Consensus 173 -------e~-----k~~l---~~~~~l~~lv~~L~~g----s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~l 233 (312)
+. +..+ +++..+..|+-+|++| +.+.+..++.++-+++..-++-+...-=.+.++++|=..
T Consensus 344 dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 344 DPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred CcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHH
Confidence 11 0111 1234688888888877 678888999999998865422222221112356666666
Q ss_pred hcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhh
Q 021419 234 IKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 234 l~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~ 281 (312)
+.+. .|..+.-|.++|-.+-.-- .++. + .+.++-|.+.+.
T Consensus 424 ~~d~-~PEvR~vaarAL~~l~e~~----g~~~-f--~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 424 LDDA-VPEVRAVAARALGALLERL----GEVS-F--DDLIPELSETLT 463 (569)
T ss_pred hcCC-ChhHHHHHHHHHHHHHHHH----Hhhc-c--cccccHHHHhhc
Confidence 6666 7888888888886664321 1111 1 556666666664
No 149
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=45.82 E-value=1.1e+02 Score=28.21 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=84.2
Q ss_pred hhhhHHHHHHHHHHHhchh----hhHHHHhcCCHH-HHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccC
Q 021419 106 TGGRDLVAKIKKWIKESER----NKRCIVDYGAVS-VLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS 180 (312)
Q Consensus 106 ~~~~~al~~l~~lak~s~~----nR~~l~~aG~v~-~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~ 180 (312)
.+|.+++++|.++.+.++. -|+++++.++++ =|+.+|.+..+ +..+...++.+|.+|--.-+-. ..+
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~-----~~~l~~~~l~LLV~LT~P~~~~---~~~ 80 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKD-----DDKLFLACLRLLVNLTWPIELL---VES 80 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccC-----chHHHHHHHHHHHHhCCCHHHh---ccC
Confidence 4688999999999987654 366777777665 56666654422 3467788888888874211110 000
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC----------CChHHHHHHHHHH
Q 021419 181 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP----------ICPTATEASFVVV 250 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~----------~~~~a~~~Al~aL 250 (312)
. ..+...+.+...+...+ -.+|+.+.+. +++..+++++... .+....+..+..+
T Consensus 81 ~-----------~~~~~~~~~~~~l~~~l----~~yK~afl~~-~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~Li 144 (266)
T PF04821_consen 81 Q-----------PKDKNQRRNIPELLKYL----QSYKEAFLDP-RVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLI 144 (266)
T ss_pred C-----------CCChHHHHHHHHHHHHH----HHHHHHHccc-HHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHH
Confidence 0 01233333444444444 3456666553 6777777665321 1224566667777
Q ss_pred HHhhcCCCC--C-----------cchHHHHHHcCcHHHHHHHhhhc
Q 021419 251 YHMITSASA--A-----------DKPIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 251 ~~L~~~~~~--~-----------~~Nr~~~V~~G~V~~LvelL~~~ 283 (312)
.|+..-+.. . ++-...+-+.|....|+.+..+.
T Consensus 145 RNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~ 190 (266)
T PF04821_consen 145 RNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSP 190 (266)
T ss_pred HHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCc
Confidence 777433200 0 01223344556666666666543
No 150
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=45.56 E-value=1.4e+02 Score=29.23 Aligned_cols=97 Identities=13% Similarity=0.200 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHhcCC---HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc-CCC--ChHHHHHHHHHHHHhh
Q 021419 181 ASSMHCMVWFLKSGD---LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK-EPI--CPTATEASFVVVYHMI 254 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs---~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~-~~~--~~~a~~~Al~aL~~L~ 254 (312)
...+.++-.++++.. ...=..|+.++..+...+|.....|-+. |+++.+++-+. .+. +..+...--.+|-+||
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~-Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~Aic 183 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEA-GLIDAFLDAITAKGILPSSEVLTSLPNVLSAIC 183 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHc-CChHHHHHHHhccCCCCcHHHHHHHHHHHhHHh
Confidence 556777777777752 3444678888888876667777788566 99999998887 553 3344444446677779
Q ss_pred cCCCCCcchHHHHHHcCcHHHHHHHhhh
Q 021419 255 TSASAADKPIQKFVDMGLVSLLLETLVD 282 (312)
Q Consensus 255 ~~~~~~~~Nr~~~V~~G~V~~LvelL~~ 282 (312)
.+. +-..++.+.++++.+++++.+
T Consensus 184 LN~----~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 184 LNN----RGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred cCH----HHHHHHHhcChHHHHHHHhCC
Confidence 985 788889999999999999864
No 151
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=44.43 E-value=2.4e+02 Score=26.06 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=74.2
Q ss_pred CCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCC
Q 021419 103 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 182 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~ 182 (312)
.|+..+.+|+.-|......-+.+. +- ..-+.+|+.++.+.-+ +......++..|..|.....-.+.. ...
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~--L~-~~ev~~L~~F~~~rl~-----D~~~~~~~l~gl~~L~~~~~~~~~~--~~~ 80 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDF--LS-RQEVQVLLDFFCSRLD-----DHACVQPALKGLLALVKMKNFSPES--AVK 80 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhh--cc-HHHHHHHHHHHHHHhc-----cHhhHHHHHHHHHHHHhCcCCChhh--HHH
Confidence 344555567777777666555332 21 1236777787754311 1223444455554442211100000 001
Q ss_pred CHHHHHHHH--hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHh
Q 021419 183 SMHCMVWFL--KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM 253 (312)
Q Consensus 183 ~l~~lv~~L--~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L 253 (312)
.+..+..-. ++-....|...-.+|..|.....+....+|. +++.++++++..+.+|+...-+...+..+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~--~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGD--DFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchh--HHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 222222211 1224577888888888886442333345543 69999999998778998776666666555
No 152
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.11 E-value=1.1e+02 Score=32.99 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHh
Q 021419 154 VSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTL 233 (312)
Q Consensus 154 ~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~l 233 (312)
.-++.-||.+|.++++ .| +.++..+-+.++|++.+.-.|.-|+.....+....++..+ -++..--++
T Consensus 121 q~vVglAL~alg~i~s--~E-----mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e------~f~~~~~~l 187 (866)
T KOG1062|consen 121 QYVVGLALCALGNICS--PE-----MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE------HFVIAFRKL 187 (866)
T ss_pred eeehHHHHHHhhccCC--HH-----HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH------HhhHHHHHH
Confidence 4456667777777643 22 1245678889999999888888888888877655565443 256677777
Q ss_pred hcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh
Q 021419 234 IKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD 282 (312)
Q Consensus 234 l~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~ 282 (312)
|.+. ++...-.++..++.+|.-. ..+...+=+ .++.|+..|.+
T Consensus 188 L~ek-~hGVL~~~l~l~~e~c~~~---~~~l~~fr~--l~~~lV~iLk~ 230 (866)
T KOG1062|consen 188 LCEK-HHGVLIAGLHLITELCKIS---PDALSYFRD--LVPSLVKILKQ 230 (866)
T ss_pred Hhhc-CCceeeeHHHHHHHHHhcC---HHHHHHHHH--HHHHHHHHHHH
Confidence 8776 6667777888899998753 244444444 77788877753
No 153
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=44.03 E-value=2.2e+02 Score=29.13 Aligned_cols=140 Identities=12% Similarity=0.157 Sum_probs=89.9
Q ss_pred HHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcC-CHHHHHHHHHHHH
Q 021419 129 IVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG-DLSRRRNTVLVLR 207 (312)
Q Consensus 129 l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~g-s~~~r~~Aa~lL~ 207 (312)
|...|....|+.+|.+.+. ...++-++-.+|--. ...+|++.++.-+ +.-|..+-+.. .++-....+.+|.
T Consensus 176 iR~~~~lD~Llrmf~aPn~-----et~vRve~~rlLEq~--~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNL-----ETSVRVEAARLLEQI--LVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILE 247 (832)
T ss_pred hhccchHHHHHHHHhCCch-----hHHHHHHHHHHHHHH--HhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence 4555788888888876532 124566666666543 2357777776544 44444443433 6676677888888
Q ss_pred HHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHh
Q 021419 208 EVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETL 280 (312)
Q Consensus 208 ~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL 280 (312)
.+-..+++.+..+-.+ |.+...+---+.. +|...+.+..+|-|...+.. -.-..+||+..+-+-|.-+-
T Consensus 248 ~mFKHSeet~~~Lvaa-~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~--~a~qrrmveKr~~EWLF~LA 316 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAA-GGLDAVLYWCRRT-DPALLRHCALALGNCALHGG--QAVQRRMVEKRAAEWLFPLA 316 (832)
T ss_pred HHhhhhHHHHHHHHhh-cccchheeecccC-CHHHHHHHHHHhhhhhhhch--hHHHHHHHHhhhhhhhhhhh
Confidence 8876666655555366 7777766555543 68888889999998876530 14677888877666555444
No 154
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=43.67 E-value=4.6e+02 Score=28.47 Aligned_cols=169 Identities=9% Similarity=0.160 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcc-cccccchhHHHHHHHHHHHHhcCCCChhHHHh-------ccC
Q 021419 109 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESF-SKTCLDEHVSVLEEILSTLTLLFPLAGEALTY-------LGS 180 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~-~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~-------l~~ 180 (312)
.+.+-+|-..+-.-..||+.|.+.|+++.|++.|... ..+......++.|..+.++-.|.. +.+... ...
T Consensus 139 l~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~--ea~~~~~~~~~~~~~~ 216 (802)
T PF13764_consen 139 LQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLS--EANSSSSSESKSSSSL 216 (802)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHH--HHhhhhhhhccccccc
Confidence 4445555554444577999999999999999998421 110001235677887777766532 111111 111
Q ss_pred C----CCHHHHHHHHhcC-------CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc-CCCChHHHHHHHH
Q 021419 181 A----SSMHCMVWFLKSG-------DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK-EPICPTATEASFV 248 (312)
Q Consensus 181 ~----~~l~~lv~~L~~g-------s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~-~~~~~~a~~~Al~ 248 (312)
. .....+..+|+.- +......-+++|=.|+.-+++.-..+- ..+...+++=+ |......-+--+.
T Consensus 217 ~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv---~~F~p~l~f~~~D~~~~~~~~~~Le 293 (802)
T PF13764_consen 217 SGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV---EHFKPYLDFDKFDEEHSPDEQFKLE 293 (802)
T ss_pred cccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH---HHHHHhcChhhcccccCchHHHHHH
Confidence 1 2444555555433 234444555555555432222222221 12333333211 1101111123355
Q ss_pred HHHHhhcC--CCCCc-chHHHHHHcCcHHHHHHHhhh
Q 021419 249 VVYHMITS--ASAAD-KPIQKFVDMGLVSLLLETLVD 282 (312)
Q Consensus 249 aL~~L~~~--~~~~~-~Nr~~~V~~G~V~~LvelL~~ 282 (312)
+...++.. ++.+| +=|..+++.|.|..++++|.+
T Consensus 294 ~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 294 CFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLK 330 (802)
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555321 11122 467889999999999999974
No 155
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=43.36 E-value=4.3e+02 Score=28.04 Aligned_cols=168 Identities=11% Similarity=-0.009 Sum_probs=90.5
Q ss_pred chhhhHHHHHHHHHHHhchhhhHHHH-hcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCC-C
Q 021419 105 QTGGRDLVAKIKKWIKESERNKRCIV-DYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSA-S 182 (312)
Q Consensus 105 ~~~~~~al~~l~~lak~s~~nR~~l~-~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~-~ 182 (312)
.+.+.-|+.-||.+.+....|-..+- +.|. .++..++.... . .+.-+--+++.|.++++ +...+..+.+. .
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~-~~~~~li~~~~-~----~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQ-NLVGTLIPILN-A----DPANQLLVVRCLANLFS-NPAGRELFMSRLE 630 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhh-HHHHhhhcccc-c----chhHHHHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence 34456688888888887765554332 2222 23333332221 0 12335567889999865 56666665532 2
Q ss_pred CHHHHHHHHhcCC-HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCc
Q 021419 183 SMHCMVWFLKSGD-LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 261 (312)
Q Consensus 183 ~l~~lv~~L~~gs-~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~ 261 (312)
.+..-+--.++++ ...++.-+.+.+++|-.--.-...++..+-+..++..++..-.+-.|.--++.||-+|+...
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~---- 706 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD---- 706 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc----
Confidence 2222222234443 34455555555555422111111243332233333334432223356666788888888875
Q ss_pred chHHHHHHcCcHHHHHHHhhhc
Q 021419 262 KPIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 262 ~Nr~~~V~~G~V~~LvelL~~~ 283 (312)
.+..++++.=-|..++..+.+.
T Consensus 707 ~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHHHh
Confidence 6888998888888888888653
No 156
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=42.66 E-value=56 Score=30.58 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=49.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC-CChHHHHHHHHHHHHhhcCCCCCc
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP-ICPTATEASFVVVYHMITSASAAD 261 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~-~~~~a~~~Al~aL~~L~~~~~~~~ 261 (312)
.|..++.-|..+|.--|..++-++-.| .++-+|+.|.+.|.+. ..|-.+..|+.+|-++..-.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl------------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~---- 251 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQL------------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED---- 251 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhc------------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH----
Confidence 455555555444444444444444333 2234678888887754 46667777888888876542
Q ss_pred chHHHHHHcCcHHHHHHHhhhcccchhhh
Q 021419 262 KPIQKFVDMGLVSLLLETLVDAQRSLCEK 290 (312)
Q Consensus 262 ~Nr~~~V~~G~V~~LvelL~~~~~~~~e~ 290 (312)
++++|.+++.|.++-+.|.
T Consensus 252 ----------~~~vL~e~~~D~~~vv~es 270 (289)
T KOG0567|consen 252 ----------CVEVLKEYLGDEERVVRES 270 (289)
T ss_pred ----------HHHHHHHHcCCcHHHHHHH
Confidence 6777888887765544444
No 157
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=42.65 E-value=1.4e+02 Score=30.45 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhccch--HHHHHhhhhhchHHHHHHhhcCCCChH------HHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 021419 198 RRRNTVLVLREVISSDH--RRVNMFLEIEGAIESLYTLIKEPICPT------ATEASFVVVYHMITSASAADKPIQKFVD 269 (312)
Q Consensus 198 ~r~~Aa~lL~~Ls~~~~--~~~~~Ig~~~g~i~~LV~ll~~~~~~~------a~~~Al~aL~~L~~~~~~~~~Nr~~~V~ 269 (312)
-|.-++.+|--.++..+ ...+.+ ..|+-|..++..+.++. ...++-.+|+.++..+ +--..++.
T Consensus 79 y~~i~itvLacFC~~pElAsh~~~v----~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e----~G~~~Lia 150 (698)
T KOG2611|consen 79 YLQISITVLACFCRVPELASHEEMV----SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE----AGLMTLIA 150 (698)
T ss_pred HHHHHHHHHHHHhCChhhccCHHHH----HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC----chhHHHHh
Confidence 45667777777765522 345666 34889999988665554 7899999999999985 67788899
Q ss_pred cCcHHHHHHHhh
Q 021419 270 MGLVSLLLETLV 281 (312)
Q Consensus 270 ~G~V~~LvelL~ 281 (312)
.|.++.+-++-.
T Consensus 151 ~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 151 SGGLRVIAQMYE 162 (698)
T ss_pred cCchHHHHHHHh
Confidence 999999987653
No 158
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.95 E-value=13 Score=34.11 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=32.6
Q ss_pred cchhhhhhHHHhhhhc---cc--chh--hHHhhHHHHhhCCCcccccccccCCCCccc
Q 021419 6 HVRLINLAKWLVESAW---VA--LRL--FQERCEEELLWAAEMIKIKAQDLKGKEVKV 56 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~---~~--~~~--~~er~~~e~~~G~~TCP~T~Q~L~~~~l~P 56 (312)
+.|+||.|+-..-... ++ .+. ++| +..-|-.+.-.||+|..+|.+.|++|
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~e-cvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKE-CVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHH-HHHHhccccccccCCCCcCcccceEe
Confidence 5678888887766432 22 333 333 33345667788888888888888776
No 159
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=41.80 E-value=1.3e+02 Score=23.88 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=44.5
Q ss_pred CHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHH-HHHHHHHHHHhhcCC
Q 021419 183 SMHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTA-TEASFVVVYHMITSA 257 (312)
Q Consensus 183 ~l~~lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a-~~~Al~aL~~L~~~~ 257 (312)
.+|.+...|+ +...+.|..+-.++-.|++..+-..+.+ + .+++.+++-.. +.. .+.++.+|..++..+
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l-~--~l~~~i~~~~~----~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVL-N--ALMESILKNWT----QETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHH-H--HHHHHHHhccc----cchhHHHHHHHHHHHHHcc
Confidence 4677788888 5577899999999999975533223333 1 24444444332 233 488999999999664
No 160
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=40.96 E-value=5.7 Score=26.36 Aligned_cols=33 Identities=9% Similarity=-0.202 Sum_probs=16.6
Q ss_pred hhhhHHHhhh----hccc-chhhHHhhHHHHhh-----CCCccc
Q 021419 10 INLAKWLVES----AWVA-LRLFQERCEEELLW-----AAEMIK 43 (312)
Q Consensus 10 ~~~~~~~~~~----~~~~-~~~~~er~~~e~~~-----G~~TCP 43 (312)
||.+|+ +.+ |+++ =+++|-|..++.+. +..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 788889 888 8866 88888888877433 234576
No 161
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=40.30 E-value=1e+02 Score=32.06 Aligned_cols=117 Identities=9% Similarity=0.078 Sum_probs=70.9
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 021419 133 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISS 212 (312)
Q Consensus 133 G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~ 212 (312)
.++|.|+++|...+++..+..-.+--.|-+.|..++ +-.++.|.++ .+..+-.-+++.+..-|+.|+.++-++..-
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfa---q~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFA---QLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHH---HHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 478999999966432110001222333444555442 1224455555 566666667888999999999999988632
Q ss_pred ch-HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 213 DH-RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 213 ~~-~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
.. .....+ .+.+++++..+..|. +-....-+.-+++.++.+
T Consensus 397 p~~~~lT~~--V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 397 PCEDCLTKI--VPQALPGIENEMSDS-CLWVKSTTAWCFGAIADH 438 (858)
T ss_pred ccHHHHHhh--HHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHH
Confidence 11 222222 257899999888776 556666677777777543
No 162
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=38.27 E-value=1.3e+02 Score=25.43 Aligned_cols=74 Identities=5% Similarity=0.135 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHhcC---------CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHH
Q 021419 180 SASSMHCMVWFLKSG---------DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVV 250 (312)
Q Consensus 180 ~~~~l~~lv~~L~~g---------s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL 250 (312)
+.+.+..|+.+|..= +......+...|+.|..........+ +.++++..|+..|... +++.+..++..|
T Consensus 105 ~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~-~~~~~v~~i~~~L~s~-~~~~r~~~leiL 182 (187)
T PF06371_consen 105 ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVL-SHPDSVNLIALSLDSP-NIKTRKLALEIL 182 (187)
T ss_dssp HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHH-CSSSHHHHHHHT--TT-SHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHH-cCcHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 345667777766431 23455678888999876644455566 5669999999999765 889999999999
Q ss_pred HHhhc
Q 021419 251 YHMIT 255 (312)
Q Consensus 251 ~~L~~ 255 (312)
..+|.
T Consensus 183 ~~lc~ 187 (187)
T PF06371_consen 183 AALCL 187 (187)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 99884
No 163
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=38.08 E-value=5e+02 Score=27.32 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=24.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDH 214 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~ 214 (312)
.+..+--+|++.....|-.|.++|-+|+-..|
T Consensus 304 ~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 304 TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 44555556777888999999999999975444
No 164
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.69 E-value=1.3e+02 Score=31.75 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 021419 129 IVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLRE 208 (312)
Q Consensus 129 l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~ 208 (312)
|...|+.-+++.-|.. .--+|++.|++.|..|+.....- ...+++.++.+++..-...|..|...|..
T Consensus 369 iI~sGACGA~VhGlED-------Ef~EVR~AAV~Sl~~La~ssP~F-----A~~aldfLvDMfNDE~~~VRL~ai~aL~~ 436 (823)
T KOG2259|consen 369 IIPSGACGALVHGLED-------EFYEVRRAAVASLCSLATSSPGF-----AVRALDFLVDMFNDEIEVVRLKAIFALTM 436 (823)
T ss_pred cccccccceeeeechH-------HHHHHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3444555555555532 23678999999998886422110 12368888898888778889999888888
Q ss_pred Hh
Q 021419 209 VI 210 (312)
Q Consensus 209 Ls 210 (312)
++
T Consensus 437 Is 438 (823)
T KOG2259|consen 437 IS 438 (823)
T ss_pred HH
Confidence 86
No 165
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=37.46 E-value=5.2e+02 Score=27.33 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC
Q 021419 158 EEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP 237 (312)
Q Consensus 158 e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~ 237 (312)
..|+.+|..+-. ...|. .+..|=..+.+. ..|..|..+|..+....+.+...|.+. .+|..|++.|.-+
T Consensus 54 ~~~~~il~~~~~--P~~K~------~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t-~Lf~~LLk~L~~D 122 (668)
T PF04388_consen 54 QRALEILVGVQE--PHDKH------LFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQT-PLFKSLLKCLQFD 122 (668)
T ss_pred HHHHHHHHhcCC--ccHHH------HHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcC-hhHHHHHHHHhhc
Confidence 345667775421 21222 455566666544 589999999999987767778888776 8999999999876
Q ss_pred CChHHHHHHHHHHHHhhcC
Q 021419 238 ICPTATEASFVVVYHMITS 256 (312)
Q Consensus 238 ~~~~a~~~Al~aL~~L~~~ 256 (312)
.++.....|+.+|.-|.+.
T Consensus 123 ~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 123 TSITVVSSALLVLIMLLPH 141 (668)
T ss_pred ccHHHHHHHHHHHHHHhcc
Confidence 6888888999999988764
No 166
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.46 E-value=5.4e+02 Score=27.51 Aligned_cols=143 Identities=6% Similarity=0.073 Sum_probs=89.0
Q ss_pred CCchhhhHHHHHHHHHHHhchh--hhHHHHhc--CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhc
Q 021419 103 EDQTGGRDLVAKIKKWIKESER--NKRCIVDY--GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYL 178 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~--nR~~l~~a--G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l 178 (312)
.|...|..|...|.+++.+|.. .+...-+. =.+|-++.+++.. ++.++.+|+..+.-+.... +..++
T Consensus 140 ~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-------spkiRs~A~~cvNq~i~~~--~qal~ 210 (885)
T KOG2023|consen 140 PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-------SPKIRSHAVGCVNQFIIIQ--TQALY 210 (885)
T ss_pred CcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-------ChhHHHHHHhhhhheeecC--cHHHH
Confidence 4556678899999999998864 11111111 2466666666544 4678888888776543321 12222
Q ss_pred cC-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCC
Q 021419 179 GS-ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 179 ~~-~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
.. ..++..+..+=...+.+.|.+-+..+..|....++. .+---.++++-.++..++. +....-.|-.....++..+
T Consensus 211 ~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk--l~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 211 VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQP 287 (885)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCc
Confidence 22 235555555444458999999999999997665542 2223346788888888776 4444445667788887763
No 167
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=37.16 E-value=4.1e+02 Score=25.99 Aligned_cols=145 Identities=12% Similarity=0.108 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhh
Q 021419 156 VLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKS-GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLI 234 (312)
Q Consensus 156 v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll 234 (312)
++-.++..+..+++.+.+.-.....+|.++.+..=|+. .+.-.+.+..-+..+|+.. +...+.+... |+|.-+-.++
T Consensus 187 aRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQe-glIdlicnII 264 (524)
T KOG4413|consen 187 ARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQE-GLIDLICNII 264 (524)
T ss_pred HHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchh-hHHHHHHHHh
Confidence 34445555555545455555555667889998888866 4777899999999999755 4446677554 9999999988
Q ss_pred cCC-CChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHH-------HHhhhcccchhhhhh-----ccCCHHHHH
Q 021419 235 KEP-ICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLL-------ETLVDAQRSLCEKPW-----VFSTDFAAV 301 (312)
Q Consensus 235 ~~~-~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~Lv-------elL~~~~~~~~e~aL-----L~~~~eGR~ 301 (312)
... .+|-..-.++..--.+-.. .|....++.-.+..++ |+....+....|-|. |-+..||..
T Consensus 265 sGadsdPfekfralmgfgkffgk-----eaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGad 339 (524)
T KOG4413|consen 265 SGADSDPFEKFRALMGFGKFFGK-----EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGAD 339 (524)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcc-----hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhH
Confidence 643 2443333344433333332 4555555544444443 333323444455444 666778877
Q ss_pred HHhhcC
Q 021419 302 ITGEER 307 (312)
Q Consensus 302 ai~~~~ 307 (312)
-+.+.+
T Consensus 340 lllkTg 345 (524)
T KOG4413|consen 340 LLLKTG 345 (524)
T ss_pred HHhccC
Confidence 666554
No 168
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=36.91 E-value=5.1e+02 Score=27.03 Aligned_cols=153 Identities=11% Similarity=0.110 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021419 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
.+..+...+.+ ++...+..+++++..+..+-..-+.++... .+..|.+++.+.... -+.+++...|++++.|
T Consensus 84 ~a~~i~e~l~~----~~~~~~~~a~k~l~sls~d~~fa~efi~~~-gl~~L~~liedg~~~---~~~~~L~~~L~af~el 155 (713)
T KOG2999|consen 84 YAKRIMEILTE----GNNISKMEALKELDSLSLDPTFAEEFIRCS-GLELLFSLIEDGRVC---MSSELLSTSLRAFSEL 155 (713)
T ss_pred HHHHHHHHHhC----CCcHHHHHHHHHHhhccccHHHHHHHHhcc-hHHHHHHHHHcCccc---hHHHHHHHHHHHHHHH
Confidence 44556666654 445666779999999988777666665544 457888888765320 1345566666666655
Q ss_pred CCCChhHHHhc--cCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHH
Q 021419 168 FPLAGEALTYL--GSASSMHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTAT 243 (312)
Q Consensus 168 ~~~~~e~k~~l--~~~~~l~~lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~ 243 (312)
.. ..-..- ....++.+++.+.+.. +...-..|...|+++...++.....|.+ +--+.-|+..|..+ +.+..
T Consensus 156 me---hgvvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~e-ev~i~~li~hlq~~-n~~i~ 230 (713)
T KOG2999|consen 156 ME---HGVVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAE-EVPIETLIRHLQVS-NQRIQ 230 (713)
T ss_pred Hh---hceeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHhc-chHHH
Confidence 32 111111 1223555665555332 4556667888888886555555556633 46788888888776 44444
Q ss_pred HHHHHHHHHh
Q 021419 244 EASFVVVYHM 253 (312)
Q Consensus 244 ~~Al~aL~~L 253 (312)
..|+..+-+|
T Consensus 231 ~~aial~nal 240 (713)
T KOG2999|consen 231 TCAIALLNAL 240 (713)
T ss_pred HHHHHHHHHH
Confidence 4466666666
No 169
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.49 E-value=1.8e+02 Score=31.09 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccC-CCCHHHH
Q 021419 109 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS-ASSMHCM 187 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~-~~~l~~l 187 (312)
.+++..++.++.-++..|.-+...=.++-+-.++.. .+...+..++..+.+|.....-....+++ ...++..
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~e-------e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w 632 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTE-------ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLW 632 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhc-------ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHH
Confidence 468888888888777777666655222333233321 14566788888888875433334445555 4566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 021419 188 VWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 254 (312)
Q Consensus 188 v~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~ 254 (312)
...+....-..+..++..+-.+.+.+..++..+-+.....+.++.++.++ ++....-.+....|+-
T Consensus 633 ~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 633 NLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLF 698 (748)
T ss_pred HHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHH
Confidence 66665544455555565555555555556653435556788888998887 7778888888888854
No 170
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.92 E-value=82 Score=25.21 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=31.9
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHc
Q 021419 226 AIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM 270 (312)
Q Consensus 226 ~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~ 270 (312)
+|+.||+-|.|. ++..+..|+.+|+..|..+ .+...++..
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~----~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDK----EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhch----hhHHHHHHc
Confidence 578899999888 8889999999999999875 455555543
No 171
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.83 E-value=1.4e+02 Score=30.98 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=93.9
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhc-cCCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHh
Q 021419 133 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYL-GSASSMHCMVWFLKSGD-LSRRRNTVLVLREVI 210 (312)
Q Consensus 133 G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l-~~~~~l~~lv~~L~~gs-~~~r~~Aa~lL~~Ls 210 (312)
..+++|+.-+.++ ++.++..|+.-+..+.... .+..+ .-++.+..+...+.... ...|+.|..+-..|.
T Consensus 250 ~~i~vlv~~l~ss-------~~~iq~~al~Wi~efV~i~--g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 250 DMINVLVPHLQSS-------EPEIQLKALTWIQEFVKIP--GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cchhhccccccCC-------cHHHHHHHHHHHHHHhcCC--CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 3567776666544 4678888877766554322 12222 23556666666565543 356666665543333
Q ss_pred cc--chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchh
Q 021419 211 SS--DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLC 288 (312)
Q Consensus 211 ~~--~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~ 288 (312)
+. ++..+..| +...+|+.|-+.+.++ ...++-+++.-+.+|-... +|..-.--....+.|+.-|.|.+..+.
T Consensus 321 ~l~s~~~~~~~i-d~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~----p~ql~~h~~~if~tLL~tLsd~sd~vv 394 (675)
T KOG0212|consen 321 KLVSSERLKEEI-DYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKA----PGQLLVHNDSIFLTLLKTLSDRSDEVV 394 (675)
T ss_pred HHHhhhhhcccc-chHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhC----cchhhhhccHHHHHHHHhhcCchhHHH
Confidence 21 12233234 4424788888888876 5677788888888885543 354444445688999999998888899
Q ss_pred hhhh-----ccCCHHH
Q 021419 289 EKPW-----VFSTDFA 299 (312)
Q Consensus 289 e~aL-----L~~~~eG 299 (312)
+++| +|..++.
T Consensus 395 l~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 395 LLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHhcCccc
Confidence 9988 6665544
No 172
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.52 E-value=58 Score=34.26 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCC
Q 021419 180 SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASA 259 (312)
Q Consensus 180 ~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~ 259 (312)
..|+=..+|+=|...=++.|.+|+.-+.+|+..++... ..++..||++++|+ ....+..|+.+|..++..-
T Consensus 371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA------~~aldfLvDMfNDE-~~~VRL~ai~aL~~Is~~l-- 441 (823)
T KOG2259|consen 371 PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA------VRALDFLVDMFNDE-IEVVRLKAIFALTMISVHL-- 441 (823)
T ss_pred cccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHh--
Confidence 34444556665655568999999999999986555432 24689999999987 4466777888888776532
Q ss_pred CcchHHHHHHcCcHHHHHHHhhhcc
Q 021419 260 ADKPIQKFVDMGLVSLLLETLVDAQ 284 (312)
Q Consensus 260 ~~~Nr~~~V~~G~V~~LvelL~~~~ 284 (312)
. ++...++..++.|.|..
T Consensus 442 --~-----i~eeql~~il~~L~D~s 459 (823)
T KOG2259|consen 442 --A-----IREEQLRQILESLEDRS 459 (823)
T ss_pred --e-----ecHHHHHHHHHHHHhcC
Confidence 1 22234556666665543
No 173
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=34.02 E-value=1.8e+02 Score=30.08 Aligned_cols=135 Identities=14% Similarity=0.172 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHH
Q 021419 111 LVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWF 190 (312)
Q Consensus 111 al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~ 190 (312)
++--|..+++.-..-|--+.++-+++.|+.+|+... ..+.--+...+.++...-...+.-+-+.+.|+.++.+
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-------imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~ 481 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-------IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL 481 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-------ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence 444555555544445556666677777777775421 0111112233333322112223444466789999999
Q ss_pred HhcCCHHHHHHHHHHHHHHhccch--HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 191 LKSGDLSRRRNTVLVLREVISSDH--RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 191 L~~gs~~~r~~Aa~lL~~Ls~~~~--~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
+.+.+..-|.+..=+|..+.--.+ +..+.+.+. .+..++.+..|+ +-....-.+.+|.|+..
T Consensus 482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Laki--g~~kvl~~~NDp-c~~vq~q~lQilrNftc 545 (743)
T COG5369 482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKI--GVEKVLSYTNDP-CFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhc--CHHHHHHHhcCc-ccccHHHHHHHHHhccc
Confidence 988877888899999999874322 334566454 458888998877 66677779999999954
No 174
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=33.40 E-value=76 Score=34.27 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=47.4
Q ss_pred HhhhhhchHHHHHHhhcCCC----ChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhc----c----cc
Q 021419 219 MFLEIEGAIESLYTLIKEPI----CPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA----Q----RS 286 (312)
Q Consensus 219 ~Ig~~~g~i~~LV~ll~~~~----~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~----~----~~ 286 (312)
.+++. |.+..|+.+|..-. ........++.|.+-|..+ .||.++++.|+++.|++.|..+ . ..
T Consensus 112 v~~~~-gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~----~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~ 186 (802)
T PF13764_consen 112 VLAEC-GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK----VNRRALLELNALNRLLSVLNRALQANQNSSQAE 186 (802)
T ss_pred HhhcC-CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH----HHHHHHHHcCCHHHHHHHHHHHHhCccccccch
Confidence 34344 77777777765311 2244555666666667775 8999999999999999999632 2 35
Q ss_pred hhhhhh
Q 021419 287 LCEKPW 292 (312)
Q Consensus 287 ~~e~aL 292 (312)
++|+.|
T Consensus 187 i~E~LL 192 (802)
T PF13764_consen 187 IAEQLL 192 (802)
T ss_pred HHHHHH
Confidence 777776
No 175
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=32.59 E-value=2.5e+02 Score=22.23 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccc---------h----HHHHHhhh-hhchHHHHHHhhcCCCC---hHHH
Q 021419 181 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD---------H----RRVNMFLE-IEGAIESLYTLIKEPIC---PTAT 243 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~---------~----~~~~~Ig~-~~g~i~~LV~ll~~~~~---~~a~ 243 (312)
+++++.++..+++ +.........+|..+...- . +.+..+.+ .+.++..+.+++....+ ....
T Consensus 25 p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~ 103 (148)
T PF08389_consen 25 PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELV 103 (148)
T ss_dssp TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHH
T ss_pred chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 4566777776655 3445555555555554210 0 12222321 23456666666654322 7889
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh
Q 021419 244 EASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD 282 (312)
Q Consensus 244 ~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~ 282 (312)
+.++.++.+...+ -....++....++.+.++|.+
T Consensus 104 ~~~L~~l~s~i~~-----~~~~~i~~~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 104 KAALKCLKSWISW-----IPIELIINSNLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHTTT-----S-HHHHHSSSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHh-----CCHHHhccHHHHHHHHHHcCC
Confidence 9999999999888 477888888899999999954
No 176
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=32.23 E-value=1.9e+02 Score=27.58 Aligned_cols=58 Identities=9% Similarity=0.121 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCCChhHHHhc-cCCCCHHHHHHHHhcC---CHHHHHHHHHHHHHHhccc
Q 021419 156 VLEEILSTLTLLFPLAGEALTYL-GSASSMHCMVWFLKSG---DLSRRRNTVLVLREVISSD 213 (312)
Q Consensus 156 v~e~Al~iL~~L~~~~~e~k~~l-~~~~~l~~lv~~L~~g---s~~~r~~Aa~lL~~Ls~~~ 213 (312)
++-.|+++|..+.+.....-.++ .+++.+..|+++|+-+ ....|..|..+|..++...
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 45567777766543223333333 4677999999999876 5688999999999998643
No 177
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=32.18 E-value=3.7e+02 Score=29.24 Aligned_cols=90 Identities=11% Similarity=0.128 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccch---HHHHHhhhhhchHHHH
Q 021419 154 VSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH---RRVNMFLEIEGAIESL 230 (312)
Q Consensus 154 ~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~---~~~~~Ig~~~g~i~~L 230 (312)
..+.+.++.++....... .-...++.+...|++|++..|.....++-......+ ..+..+ .++++++
T Consensus 350 ~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~---~~l~p~~ 419 (815)
T KOG1820|consen 350 SELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV---KTLVPHL 419 (815)
T ss_pred HHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH---HHHhHHH
Confidence 456666666665432210 112467788889999999999987766655543322 223333 4689999
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhh
Q 021419 231 YTLIKEPICPTATEASFVVVYHMI 254 (312)
Q Consensus 231 V~ll~~~~~~~a~~~Al~aL~~L~ 254 (312)
+..++|. +..-+++|+.++..+-
T Consensus 420 ~~~~~D~-~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 420 IKHINDT-DKDVRKAALEAVAAVM 442 (815)
T ss_pred hhhccCC-cHHHHHHHHHHHHHHH
Confidence 9999877 7777888888877773
No 178
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=31.81 E-value=3.9e+02 Score=24.78 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-HHHHHhh------hhhch
Q 021419 154 VSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH-RRVNMFL------EIEGA 226 (312)
Q Consensus 154 ~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~-~~~~~Ig------~~~g~ 226 (312)
..+++.|+..|-..+-.+.+. ....++.+...++.++.+.|.-|..+|+.+....+ .....-+ ....+
T Consensus 41 ~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l 115 (298)
T PF12719_consen 41 PAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSL 115 (298)
T ss_pred HHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHH
Confidence 578899988877665444321 12356677777777888888888888888764322 1111111 12256
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 227 IESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 227 i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
+..+.+.+.+. ++...-.|...+.-|-..
T Consensus 116 ~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 116 LKILTKFLDSE-NPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 66666776655 566666666666666544
No 179
>PHA02334 hypothetical protein
Probab=31.57 E-value=27 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=17.5
Q ss_pred chhhhhhHHHhhhhc--cc-chhhHH
Q 021419 7 VRLINLAKWLVESAW--VA-LRLFQE 29 (312)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~-~~~~~e 29 (312)
|||.||++.++.|.| +| ++..-|
T Consensus 3 sfLLP~A~Kiv~~av~kiPd~~elge 28 (64)
T PHA02334 3 SFLLPFASKIVSDAVNKIPDDEELGE 28 (64)
T ss_pred hHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 799999999999988 66 443333
No 180
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=31.39 E-value=2.3e+02 Score=24.45 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=40.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021419 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
.++.+.++.-+.+...|..|..+|..+. +..+-....+++.|+.|..++ ++...+.|...+..+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il------~qGLvnP~~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELIL------RQGLVNPKQCVPTLIALETSP-NPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH------hcCCCChHHHHhHhhhhhCCC-ChHHHHHHHHHHHHHHH
Confidence 3455555555666667777777776653 122224434677777777665 66677777777777754
No 181
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.15 E-value=2.6e+02 Score=28.70 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=67.6
Q ss_pred cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 021419 132 YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVIS 211 (312)
Q Consensus 132 aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~ 211 (312)
+.|-.-|..+|....... .+++++..+.+|.+| .||.+|.-.+.|.++..+++.|+-..|.-+-.=|.....
T Consensus 15 a~FP~el~dLL~~~~~~l---p~~Lr~~i~~~LiLL-----rNk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ik 86 (616)
T KOG2229|consen 15 ANFPSELKDLLRTNHTVL---PPELREKIVKALILL-----RNKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIK 86 (616)
T ss_pred HhhhHHHHHHHHhccccC---CHHHHHHHHHHHHHH-----hccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 356677788886553221 357888888888876 467888777899999999999987666543322222211
Q ss_pred cchHHHHHhh-hhh-chHHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 021419 212 SDHRRVNMFL-EIE-GAIESLYTLIKEPICPTATEASFVVVYHMI 254 (312)
Q Consensus 212 ~~~~~~~~Ig-~~~-g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~ 254 (312)
..++..+- ..+ ..=..+..+|.+. ++.+.+.|+.++..|-
T Consensus 87 --n~n~~~kn~klnkslq~~~fsml~~~-d~~~ak~a~~~~~eL~ 128 (616)
T KOG2229|consen 87 --NINKKHKNDKLNKSLQAFMFSMLDQS-DSTAAKMALDTMIELY 128 (616)
T ss_pred --HHHhhcccchHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 01111110 001 1223344677666 5567777888888874
No 182
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.00 E-value=6.7e+02 Score=29.37 Aligned_cols=131 Identities=8% Similarity=0.103 Sum_probs=80.3
Q ss_pred hhHHHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHH
Q 021419 125 NKRCIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTV 203 (312)
Q Consensus 125 nR~~l~~a-G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa 203 (312)
+|.+.... +++..++.+|... ...++..|+.+|..+...| ..++..++.-..+-.=+...+...|+.|+
T Consensus 807 ~r~f~~sfD~yLk~Il~~l~e~-------~ialRtkAlKclS~ive~D---p~vL~~~dvq~~Vh~R~~DssasVREAal 876 (1692)
T KOG1020|consen 807 ARSFSQSFDPYLKLILSVLGEN-------AIALRTKALKCLSMIVEAD---PSVLSRPDVQEAVHGRLNDSSASVREAAL 876 (1692)
T ss_pred hhHHHHhhHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHhcC---hHhhcCHHHHHHHHHhhccchhHHHHHHH
Confidence 44454444 4566666666533 3568899999999885433 23444555555555556566788888888
Q ss_pred HHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhh
Q 021419 204 LVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 204 ~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~ 281 (312)
-++-.-.-..++... ....-+..-+.|. +-..+|.+++.|..+|... .+-..++ ..++++|.
T Consensus 877 dLvGrfvl~~~e~~~------qyY~~i~erIlDt-gvsVRKRvIKIlrdic~e~----pdf~~i~-----~~cakmlr 938 (1692)
T KOG1020|consen 877 DLVGRFVLSIPELIF------QYYDQIIERILDT-GVSVRKRVIKILRDICEET----PDFSKIV-----DMCAKMLR 938 (1692)
T ss_pred HHHhhhhhccHHHHH------HHHHHHHhhcCCC-chhHHHHHHHHHHHHHHhC----CChhhHH-----HHHHHHHH
Confidence 887654322232211 2344444444444 5568889999999999765 5666644 44556664
No 183
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=30.94 E-value=2.5e+02 Score=23.29 Aligned_cols=73 Identities=7% Similarity=0.072 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhch-hhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 021419 86 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 164 (312)
Q Consensus 86 ~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~-~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL 164 (312)
.+.++.+.++|.. +++..+..|+.=|-.+.+... .-...+++.++...|+.++.... +..|.+.++.++
T Consensus 40 k~a~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~------~~~Vk~kil~li 109 (142)
T cd03569 40 KYAMRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTK------NEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccC------CHHHHHHHHHHH
Confidence 3556777788854 567788889998899999754 35555777789999999886421 467899999988
Q ss_pred HhcC
Q 021419 165 TLLF 168 (312)
Q Consensus 165 ~~L~ 168 (312)
...+
T Consensus 110 ~~W~ 113 (142)
T cd03569 110 QAWA 113 (142)
T ss_pred HHHH
Confidence 7763
No 184
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=29.78 E-value=2.4e+02 Score=26.78 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC--CChHHHHHHHHHHHHhhcCC
Q 021419 196 LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP--ICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 196 ~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~--~~~~a~~~Al~aL~~L~~~~ 257 (312)
...|..|...+..+.......-..+-..++++..|+++|+-+ ......-+|+.+|-.++..+
T Consensus 236 l~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 236 LQIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 356778888887775332222223323346999999999843 55678888999999998763
No 185
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=29.53 E-value=72 Score=31.69 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=55.8
Q ss_pred hhHHHHhc--CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHH
Q 021419 125 NKRCIVDY--GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNT 202 (312)
Q Consensus 125 nR~~l~~a--G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~A 202 (312)
|=.++-+. .++..|+.+|..+.++ .++..|..=+..+....++.|.++..-|+=..+..+|++.+++.|-+|
T Consensus 356 Na~rlnennyellkiL~~lLe~s~Dp------~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~A 429 (442)
T KOG2759|consen 356 NADRLNENNYELLKILIKLLETSNDP------IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHA 429 (442)
T ss_pred hHHHHhhccHHHHHHHHHHHhcCCCC------ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHH
Confidence 33444444 4688999999776532 223333222222213356888888888999999999999999999999
Q ss_pred HHHHHHHh
Q 021419 203 VLVLREVI 210 (312)
Q Consensus 203 a~lL~~Ls 210 (312)
..++..|.
T Consensus 430 LlavQ~lm 437 (442)
T KOG2759|consen 430 LLAVQKLM 437 (442)
T ss_pred HHHHHHHH
Confidence 99998875
No 186
>PF11810 DUF3332: Domain of unknown function (DUF3332); InterPro: IPR021768 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=29.27 E-value=15 Score=32.13 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=12.3
Q ss_pred HHHHhhCCCccccccc
Q 021419 32 EEELLWAAEMIKIKAQ 47 (312)
Q Consensus 32 ~~e~~~G~~TCP~T~Q 47 (312)
+||||+|.+ |+|+.
T Consensus 69 sIEFWTG~N--Pi~g~ 82 (176)
T PF11810_consen 69 SIEFWTGSN--PITGK 82 (176)
T ss_pred eeeeecCCC--CcCCC
Confidence 799999988 88777
No 187
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=29.11 E-value=3e+02 Score=22.43 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhch-hhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 021419 87 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 165 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~-~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~ 165 (312)
+.++.+.++|.. +++..+..|+.=+-.+.+.+. .-...+.+.++...|..++..... ...|.+.++.++.
T Consensus 37 ~a~r~l~krl~~----~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~-----~~~Vk~kil~li~ 107 (133)
T smart00288 37 DAVRLLKKRLNN----KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP-----LPLVKKRILELIQ 107 (133)
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHH
Confidence 456677777764 567888889999999999854 455567777899999888865421 2348888888887
Q ss_pred hc
Q 021419 166 LL 167 (312)
Q Consensus 166 ~L 167 (312)
..
T Consensus 108 ~W 109 (133)
T smart00288 108 EW 109 (133)
T ss_pred HH
Confidence 65
No 188
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.13 E-value=8e+02 Score=26.64 Aligned_cols=47 Identities=23% Similarity=0.155 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021419 109 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
.--+..|++.+...+.-| +-+++.+..+|.+.+ ..+.=+|-..|..|
T Consensus 224 lViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~sts-------saV~fEaa~tlv~l 270 (948)
T KOG1058|consen 224 LVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTS-------SAVIFEAAGTLVTL 270 (948)
T ss_pred HHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCC-------chhhhhhcceEEEc
Confidence 335566666666444222 235778888886653 23444444445555
No 189
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=27.06 E-value=3.9e+02 Score=22.58 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcC--CHHHHHHHhhcccccccchhHHHHHHHHH
Q 021419 85 SSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYG--AVSVLAAAFESFSKTCLDEHVSVLEEILS 162 (312)
Q Consensus 85 ~~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG--~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~ 162 (312)
.+.++..++.++.+.-.+++++.+-.++.-+...+..++ ..++.+.| .+..|..+|...+ ...+.+.++.
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~------~~~~~~~ai~ 90 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPD------PPSVLEAAII 90 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCC------CHHHHHHHHH
Confidence 455777888888665545566777778888888888764 34565543 5788888887642 2345666666
Q ss_pred HHHhcCC---CChhHHHhccC---CCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 021419 163 TLTLLFP---LAGEALTYLGS---ASSMHCMVWFLKSGDLSRRRNTVLVLREVI 210 (312)
Q Consensus 163 iL~~L~~---~~~e~k~~l~~---~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls 210 (312)
+|..+.. ...+..+.+.. ++.+..++.+++. ......+..+|..+.
T Consensus 91 ~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 91 TLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred HHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 6655532 22343333333 3355555555543 233344555555444
No 190
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=27.04 E-value=3e+02 Score=22.53 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhch-hhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 021419 87 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 165 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~-~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~ 165 (312)
+.+..+-++|.. +++..+..||.=+-.+.+.+. .-+..+....+...|..++.+.... ....|.+.++.+|.
T Consensus 42 ea~~~l~krl~~----~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~---~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 42 EAARALRKRLKH----GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTD---PETPVKEKILELLQ 114 (140)
T ss_dssp HHHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTH---HHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCC---chhHHHHHHHHHHH
Confidence 345566677754 577888889988999999874 4555666777888888888654221 01128889988887
Q ss_pred hc
Q 021419 166 LL 167 (312)
Q Consensus 166 ~L 167 (312)
.+
T Consensus 115 ~W 116 (140)
T PF00790_consen 115 EW 116 (140)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 191
>PF03526 Microcin: Colicin E1 (microcin) immunity protein; InterPro: IPR003061 The structural and functional relationships among independently cloned segments of the plasmid ColE1 region that regulates and codes for colicin E1 (cea), immunity (imm) and the mitomycin C-induced lethality function (lys) have been analysed []. A model for the structure and expression of the colicin E1 operon has been proposed in which the cea and lys genes are expressed from a single inducible promoter that is controlled by the lexA repressor in response to the SOS system of Escherichia coli []. The imm gene lies between the cea and lys genes and is expressed by transcription in the opposite direction from a promoter located within the lys gene []. This arrangement indicates that the transcriptional units for all three genes overlap. It is proposed that the formation of anti-sense RNA may be an important element in the coordinate regulation of gene expression in this system []. Hydropathy analysis of the imm gene products suggests that they have hydrophobic domains characteristic of membrane-associated proteins []. The microcin E1 immunity protein is able to protect a cell that harbours the plasmid ColE1 encoding colicin E1 against colicin E1; it is thus essential both for autonomous replication and colicin E1 immunity []. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=26.62 E-value=75 Score=22.17 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=22.6
Q ss_pred cchhhhhhHHHhhhhcccchhhHHhhHHHHhh-C--CCcccccc
Q 021419 6 HVRLINLAKWLVESAWVALRLFQERCEEELLW-A--AEMIKIKA 46 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~er~~~e~~~-G--~~TCP~T~ 46 (312)
-..|||++|+.+++=. +.=..+|||. | -.|||+-+
T Consensus 16 StIl~PfSk~aIE~ia------lkft~keFw~~~~~ff~~~~gK 53 (55)
T PF03526_consen 16 STILFPFSKWAIEKIA------LKFTKKEFWNKGKNFFTDPPGK 53 (55)
T ss_pred HHhhhhhHHHHHHHHH------HHhccHHHHhcCcccccCCCcc
Confidence 3578999999988643 2223456554 5 57888753
No 192
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=25.11 E-value=5.7e+02 Score=23.90 Aligned_cols=144 Identities=10% Similarity=0.062 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCCChhHHHhccCC---CCHHHHHH-HHhcCCH-HHHHHHHHHHHHHhccch-HHHHHhhhhhchHHHH
Q 021419 157 LEEILSTLTLLFPLAGEALTYLGSA---SSMHCMVW-FLKSGDL-SRRRNTVLVLREVISSDH-RRVNMFLEIEGAIESL 230 (312)
Q Consensus 157 ~e~Al~iL~~L~~~~~e~k~~l~~~---~~l~~lv~-~L~~gs~-~~r~~Aa~lL~~Ls~~~~-~~~~~Ig~~~g~i~~L 230 (312)
..+|+++|..+++ +.+.|...... -.+=++.. ..++.+. --|..+..+|-.|...++ +....+-.. ++++..
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~T-eIVPlC 173 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTT-EIVPLC 173 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHh-hhHHHH
Confidence 6789999998865 55666654332 22222222 2233333 368888999999876554 333344255 999999
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhhcCCCCCc-------chHHHHHHcCcHHHHHHHhhhc-ccchhhhhh-----ccCCH
Q 021419 231 YTLIKEPICPTATEASFVVVYHMITSASAAD-------KPIQKFVDMGLVSLLLETLVDA-QRSLCEKPW-----VFSTD 297 (312)
Q Consensus 231 V~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~-------~Nr~~~V~~G~V~~LvelL~~~-~~~~~e~aL-----L~~~~ 297 (312)
++++..| |.-.+..|.-++--+-..+. | --|-.+|.. ...-++..|.+. +.+....++ ||..+
T Consensus 174 Lrime~G-SelSKtvA~fIlqKIlldD~--GL~YiCqt~eRF~av~~-~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 174 LRIMESG-SELSKTVATFILQKILLDDV--GLYYICQTAERFSAVAL-VLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHhhccc--cHHHHHHhHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 9999877 64445555555433322210 1 123333322 233333334333 333333333 89999
Q ss_pred HHHHHHhhc
Q 021419 298 FAAVITGEE 306 (312)
Q Consensus 298 eGR~ai~~~ 306 (312)
.+|+++...
T Consensus 250 rar~aL~~c 258 (293)
T KOG3036|consen 250 RARAALRSC 258 (293)
T ss_pred HHHHHHHhh
Confidence 999988653
No 193
>TIGR03139 QueF-II 7-cyano-7-deazaguanine reductase. The enzymatic step represents the first point at which the biosynthesis of queuosine in bacteria and eukaryotes is distinguished from the biosynthesis of archaeosine in archaea.
Probab=24.24 E-value=31 Score=28.03 Aligned_cols=12 Identities=8% Similarity=-0.133 Sum_probs=9.9
Q ss_pred CCcccccccccC
Q 021419 39 AEMIKIKAQDLK 50 (312)
Q Consensus 39 ~~TCP~T~Q~L~ 50 (312)
..-||+|+||=.
T Consensus 28 ts~CP~tGqPD~ 39 (115)
T TIGR03139 28 TSLCPKTGQPDF 39 (115)
T ss_pred ecCCCCCCCCeE
Confidence 467999999965
No 194
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=23.89 E-value=8.8e+02 Score=27.13 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=64.5
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCc
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 261 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~ 261 (312)
..++.+-..++++....|.-++.+++...+..+.-...+ - ...|...+.+++|+ +...++.|+.++....-
T Consensus 966 sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~-l-k~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaah------ 1036 (1233)
T KOG1824|consen 966 SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPL-L-KQQIGDFLKLLRDP-DLEVRRVALVVLNSAAH------ 1036 (1233)
T ss_pred HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHH-H-HHHHHHHHHHHhCC-chhHHHHHHHHHHHHHc------
Confidence 367888888999999999999888887655544322222 1 25788889999998 88999999998877654
Q ss_pred chHHHHHHcCcHHHHHHHhh
Q 021419 262 KPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 262 ~Nr~~~V~~G~V~~LvelL~ 281 (312)
||..+|+ +..+-|+..|-
T Consensus 1037 -NKpslIr-DllpeLLp~Ly 1054 (1233)
T KOG1824|consen 1037 -NKPSLIR-DLLPELLPLLY 1054 (1233)
T ss_pred -cCHhHHH-HHHHHHHHHHH
Confidence 5566664 46666666663
No 195
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=23.19 E-value=3.8e+02 Score=25.81 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 021419 86 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 165 (312)
Q Consensus 86 ~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~ 165 (312)
..++.-++.+|.+. .....+..++-+|..-+.+.+ -|+.+.+.|.+.-++..+....+.+ +.--+.+.+.
T Consensus 20 ~Dev~ylld~l~~~---~~~s~Rr~sll~La~K~~~~~-Fr~~~ra~g~~~~l~~~l~~~~~d~------~~~l~~a~i~ 89 (361)
T PF07814_consen 20 ADEVEYLLDGLESS---SSSSVRRSSLLELASKCADPQ-FRRQFRAHGLVKRLFKALSDAPDDD------ILALATAAIL 89 (361)
T ss_pred HHHHHHHHhhcccC---CCccHHHHHHHHHHHHhCCHH-HHHHHHHcCcHHHHHHHhccccchH------HHHHHHHHHH
Q ss_pred hcCCCChhHHHhccCCCCHHHHHHHHh
Q 021419 166 LLFPLAGEALTYLGSASSMHCMVWFLK 192 (312)
Q Consensus 166 ~L~~~~~e~k~~l~~~~~l~~lv~~L~ 192 (312)
.+...+..+-.++-+...+..++++|.
T Consensus 90 ~~l~~d~~~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 90 YVLSRDGLNMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred HHHccCCcchhhhhchhHHHHHHHHhc
No 196
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=23.07 E-value=3.7e+02 Score=21.02 Aligned_cols=61 Identities=13% Similarity=0.216 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHH
Q 021419 181 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATE 244 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~ 244 (312)
...+..++.-.+..++..+..+..+|..|... +.....+.+. |+...|-++= ...++....
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~i-G~~~fL~klr-~~~~~~~~~ 89 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDI-GAVRFLSKLR-PNVEPNLQA 89 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHc-cHHHHHHHHH-hcCCHHHHH
Confidence 34566666666677777888899999999755 5444555455 7666655553 333554433
No 197
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.81 E-value=3.7e+02 Score=29.17 Aligned_cols=91 Identities=9% Similarity=0.088 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHH
Q 021419 152 EHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLY 231 (312)
Q Consensus 152 ~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV 231 (312)
.|+.++.-||++|..+... +..|=.|-.+-+.-..-+.-.|..||.+|-.|=+.+++.+..+ ++.+=
T Consensus 120 pN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL------~e~I~ 186 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL------EEVIK 186 (968)
T ss_pred CcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH------HHHHH
Confidence 4667777788888755210 1111123333333444578899999999999977766666433 23333
Q ss_pred HhhcCCCChHHHHHHHHHHHHhhcC
Q 021419 232 TLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 232 ~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
.||.|. +|..+-.|+.+--..|+.
T Consensus 187 ~LLaD~-splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 187 KLLADR-SPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred HHhcCC-CCcchhHHHHHHHHhchh
Confidence 456666 888888888888888874
No 198
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=21.79 E-value=1.8e+02 Score=31.44 Aligned_cols=105 Identities=11% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCC
Q 021419 181 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH--RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSAS 258 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~--~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~ 258 (312)
+..+..+.|.|++.+...|++|+.++-+|+-+-. .--..+|.. |.+ |..-|.+. .|...-.-+.+++.++...
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~l-Gvv--LyEylgee-ypEvLgsILgAikaI~nvi- 872 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHL-GVV--LYEYLGEE-YPEVLGSILGAIKAIVNVI- 872 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHh-hHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhc-
Q ss_pred CCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 259 AADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 259 ~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+-.+..==-.|.+|-|.-+|.+-...+.|.+.
T Consensus 873 --gm~km~pPi~dllPrltPILknrheKVqen~I 904 (1172)
T KOG0213|consen 873 --GMTKMTPPIKDLLPRLTPILKNRHEKVQENCI 904 (1172)
T ss_pred --cccccCCChhhhcccchHhhhhhHHHHHHHHH
No 199
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.58 E-value=4.9e+02 Score=21.90 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=66.6
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhH-HHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 021419 135 VSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEA-LTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 213 (312)
Q Consensus 135 v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~-k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~ 213 (312)
.+.|.++|.... +..++.+++.+|-.|-..|.-- |..-...+.-. -...+... ..........+...
T Consensus 12 L~~L~~iLk~e~------s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-----~~~~~~~~-~~~~l~~~~~~~~~ 79 (160)
T PF11865_consen 12 LDILLNILKTEQ------SQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-----SENSNDES-TDISLPMMGISPSS 79 (160)
T ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhhhccccCcHHHhcccccCCccc-----cccccccc-hhhHHhhccCCCch
Confidence 456666665441 3678999999998876555432 32222111000 00000000 01111111221122
Q ss_pred hHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 214 HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 214 ~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+++.-. .++..|+++|+|..-..--.+++.++.++..+. +........ -.||.++..+.+++.+.-|-.+
T Consensus 80 ee~y~~-----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l---~~~cv~~L~-~viP~~l~~i~~~~~~~~e~~~ 149 (160)
T PF11865_consen 80 EEYYPT-----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSL---GLKCVPYLP-QVIPIFLRVIRTCPDSLREFYF 149 (160)
T ss_pred HHHHHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc---CcCchhHHH-HHhHHHHHHHHhCCHHHHHHHH
Confidence 343322 378999999998632233335666666665332 122222222 2788888888766555444433
No 200
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=21.54 E-value=4.7e+02 Score=21.66 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhch-hhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 021419 86 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 164 (312)
Q Consensus 86 ~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~-~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL 164 (312)
...++.+.++|.+ +++..+..||.-|-.+.+... .-...+++.++..-|+.++.....+. ..+..|++.++.++
T Consensus 37 k~a~rai~krl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~-~~~~~Vk~kil~li 111 (139)
T cd03567 37 QLAVRLLAHKIQS----PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGS-RTSEKVKTKIIELL 111 (139)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCC-CCCHHHHHHHHHHH
Confidence 3456777788864 567778889998899998664 35556777788888999885421000 12468899999988
Q ss_pred Hhc
Q 021419 165 TLL 167 (312)
Q Consensus 165 ~~L 167 (312)
...
T Consensus 112 ~~W 114 (139)
T cd03567 112 YSW 114 (139)
T ss_pred HHH
Confidence 776
No 201
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=21.46 E-value=4.4e+02 Score=28.43 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 021419 153 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISS 212 (312)
Q Consensus 153 ~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~ 212 (312)
++-++-.|+.++..++-.+ .|..=.....++.+++-|...+...|.+|+.+...|...
T Consensus 359 ~py~RtKalqv~~kifdl~--sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 359 YPYTRTKALQVLEKIFDLN--SKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred chHHHHHHHHHHHHHHhCc--ccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 5678888998887764322 111111245788888999999999999999999888644
No 202
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=21.28 E-value=4.4e+02 Score=21.90 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchh-hhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 021419 86 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESER-NKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 164 (312)
Q Consensus 86 ~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~-nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL 164 (312)
+..++.+.+++.. +++..+..||.=|..+++.... -...+++..+..-|+.++.... +..|.+.++.++
T Consensus 36 k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~------~~~Vk~kil~li 105 (144)
T cd03568 36 KDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRV------HPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccC------CHHHHHHHHHHH
Confidence 3456677777754 5678888899999999998764 4445677788888999886531 467899999988
Q ss_pred HhcC
Q 021419 165 TLLF 168 (312)
Q Consensus 165 ~~L~ 168 (312)
..++
T Consensus 106 ~~W~ 109 (144)
T cd03568 106 KQWA 109 (144)
T ss_pred HHHH
Confidence 7763
No 203
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=21.09 E-value=6.8e+02 Score=23.31 Aligned_cols=193 Identities=12% Similarity=0.119 Sum_probs=101.1
Q ss_pred chhhhHHHHHHHHHHHhchh--hhHHH--HhcCCHHHHHHHhhcc----ccc-ccchhHHHHHHHHHHHHhcCCCChhHH
Q 021419 105 QTGGRDLVAKIKKWIKESER--NKRCI--VDYGAVSVLAAAFESF----SKT-CLDEHVSVLEEILSTLTLLFPLAGEAL 175 (312)
Q Consensus 105 ~~~~~~al~~l~~lak~s~~--nR~~l--~~aG~v~~Lv~lL~s~----~~~-~~~~~~~v~e~Al~iL~~L~~~~~e~k 175 (312)
++...+|+.+| +|..+. +-..+ ...|.+.+|+.=+-+- +++ .....+.-..+||++|..+++ +++.|
T Consensus 9 ~~~Re~Al~eL---sk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr 84 (262)
T PF04078_consen 9 PETRENALLEL---SKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR 84 (262)
T ss_dssp HHHHHHHHHHH---HHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred cchHHHHHHHH---HHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence 34445565554 444332 22222 3448777776533211 110 001123346889999998876 55666
Q ss_pred HhccCCCCHHHHHHHHhcC----CH-HHHHHHHHHHHHHhccch-HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHH
Q 021419 176 TYLGSASSMHCMVWFLKSG----DL-SRRRNTVLVLREVISSDH-RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVV 249 (312)
Q Consensus 176 ~~l~~~~~l~~lv~~L~~g----s~-~~r~~Aa~lL~~Ls~~~~-~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~a 249 (312)
..+.+....--+--+|+.. .. .-|..+..++-.|...++ +....+-+. ++++-.++.+..| +.-.+..|.-+
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~t-EiiplcLr~me~G-selSKtvAtfI 162 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQT-EIIPLCLRIMEFG-SELSKTVATFI 162 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCT-THHHHHHHHHHHS--HHHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhh-chHHHHHHHHHhc-cHHHHHHHHHH
Confidence 6544443322233334332 22 367788888888876543 444444365 8999999999877 65555567766
Q ss_pred HHHhhcCCCCCc-------chHHHHHHcCcHHHHHHHhh-hcccchhhhhh-----ccCCHHHHHHHhhc
Q 021419 250 VYHMITSASAAD-------KPIQKFVDMGLVSLLLETLV-DAQRSLCEKPW-----VFSTDFAAVITGEE 306 (312)
Q Consensus 250 L~~L~~~~~~~~-------~Nr~~~V~~G~V~~LvelL~-~~~~~~~e~aL-----L~~~~eGR~ai~~~ 306 (312)
+..+-..+ .| .-|-..|.. +....++.|. +.+.+.....+ |+..+.+|.++...
T Consensus 163 lqKIL~dd--~GL~yiC~t~eRf~av~~-vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~ 229 (262)
T PF04078_consen 163 LQKILLDD--VGLNYICQTAERFFAVAM-VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQC 229 (262)
T ss_dssp HHHHHHSH--HHHHHHTSSHHHHHHHHH-HHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHH
T ss_pred HHHHHcch--hHHHHHhcCHHHHHHHHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 66653331 00 133333322 3333344343 22444444444 99999999998754
No 204
>COG0780 Enzyme related to GTP cyclohydrolase I [General function prediction only]
Probab=20.68 E-value=39 Score=28.68 Aligned_cols=12 Identities=17% Similarity=0.008 Sum_probs=9.4
Q ss_pred CCcccccccccC
Q 021419 39 AEMIKIKAQDLK 50 (312)
Q Consensus 39 ~~TCP~T~Q~L~ 50 (312)
..-||+|+||=.
T Consensus 50 ~S~CpiTgqPD~ 61 (149)
T COG0780 50 KSLCPITGQPDF 61 (149)
T ss_pred eecCCCcCCCCe
Confidence 457999999843
No 205
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=20.55 E-value=1.9e+02 Score=31.88 Aligned_cols=127 Identities=14% Similarity=0.197 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHhccC--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--HHHHHhhhhhchHH
Q 021419 153 HVSVLEEILSTLTLLFPLAGEALTYLGS--ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH--RRVNMFLEIEGAIE 228 (312)
Q Consensus 153 ~~~v~e~Al~iL~~L~~~~~e~k~~l~~--~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~--~~~~~Ig~~~g~i~ 228 (312)
+.+|.|.|++.+..+.. .-.+.++. +.+++-+.+=| |+--+|.-|++++.-+... + -.+..++. .+++
T Consensus 583 DqeVkeraIscmgq~i~---~fgD~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S-~l~i~l~~~l~--~il~ 654 (1233)
T KOG1824|consen 583 DQEVKERAISCMGQIIA---NFGDFLGNELPRTLPILLERL--GNEITRLTAVKALTLIAMS-PLDIDLSPVLT--EILP 654 (1233)
T ss_pred cHHHHHHHHHHHHHHHH---HHhhhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhc-cceeehhhhHH--HHHH
Confidence 46788888876654421 11122221 34455555544 3445788899999888633 3 22223322 4789
Q ss_pred HHHHhhcCCCChHHHH-HHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021419 229 SLYTLIKEPICPTATE-ASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 229 ~LV~ll~~~~~~~a~~-~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
.|+..++.. .++.+ ..+.++..|..+.. +.--..+++. ++..+-.++.+.+..+++.++
T Consensus 655 ~l~~flrK~--~r~lr~~~l~a~~~L~~~~~--~~~~~~~~e~-vL~el~~Lisesdlhvt~~a~ 714 (1233)
T KOG1824|consen 655 ELASFLRKN--QRALRLATLTALDKLVKNYS--DSIPAELLEA-VLVELPPLISESDLHVTQLAV 714 (1233)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHh--ccccHHHHHH-HHHHhhhhhhHHHHHHHHHHH
Confidence 999998754 23333 33333333432110 0112233322 233333344456778888887
No 206
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=20.31 E-value=1.7e+02 Score=23.44 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhh
Q 021419 242 ATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 242 a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~ 281 (312)
.-..+++.|..|+..+ .==..+|+.|+|+.|+.+|.
T Consensus 62 dLd~~Ik~l~~La~~P----~LYp~lv~l~~v~sL~~LL~ 97 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAP----ELYPELVELGAVPSLLGLLS 97 (108)
T ss_pred HHHHHHHHHHHccCCh----hHHHHHHHcCCHHHHHHHHC
Confidence 3445677778887775 56789999999999999996
No 207
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=20.27 E-value=7.3e+02 Score=23.35 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=29.0
Q ss_pred hhhHHHhhhhcccchhhHHhh--HHHHhhCCCcccccccccCCCCccccchhh-hhhhc
Q 021419 11 NLAKWLVESAWVALRLFQERC--EEELLWAAEMIKIKAQDLKGKEVKVNTSLL-YQQTK 66 (312)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~er~--~~e~~~G~~TCP~T~Q~L~~~~l~PN~tLr-Iq~Wc 66 (312)
+.-++..+||.++..-|-+=. .++|..+..+- .|.-|..+.|+.|-..++ |.+-.
T Consensus 103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~SvdPa~p~~~ssv~~lr 160 (289)
T KOG0567|consen 103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYISVDPAPPANLSSVHELR 160 (289)
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCccccCCCCCccccccHHHHH
Confidence 333334488888843332222 46676655544 344455566777665555 44443
No 208
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.24 E-value=5e+02 Score=23.97 Aligned_cols=73 Identities=8% Similarity=0.123 Sum_probs=49.8
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHH-HHhhhhhc----hHHHHHHhhc-------CCCChHHHHHHHHH
Q 021419 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRV-NMFLEIEG----AIESLYTLIK-------EPICPTATEASFVV 249 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~-~~Ig~~~g----~i~~LV~ll~-------~~~~~~a~~~Al~a 249 (312)
-.+|.+..++..-+.+.|..++.+|..+....+... ..+.+. | +.++|...+. +..+......|..+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~t-Gl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRT-GLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHc-ChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 378999999998899999999999999875322111 112122 3 4445555554 12367788889999
Q ss_pred HHHhhc
Q 021419 250 VYHMIT 255 (312)
Q Consensus 250 L~~L~~ 255 (312)
|+.|+.
T Consensus 198 L~~L~~ 203 (282)
T PF10521_consen 198 LLSLLK 203 (282)
T ss_pred HHHHHH
Confidence 999955
No 209
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.05 E-value=1.9e+02 Score=30.79 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=59.1
Q ss_pred hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcC
Q 021419 192 KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMG 271 (312)
Q Consensus 192 ~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G 271 (312)
...++..|..|.+.+-.+ .+ ...+ + -++..|.+.++++ +|-.++.|..+.-.+=. .+.....+.|
T Consensus 96 ~d~np~iR~lAlrtm~~l-~v----~~i~-e--y~~~Pl~~~l~d~-~~yvRktaa~~vakl~~------~~~~~~~~~g 160 (734)
T KOG1061|consen 96 EDPNPLIRALALRTMGCL-RV----DKIT-E--YLCDPLLKCLKDD-DPYVRKTAAVCVAKLFD------IDPDLVEDSG 160 (734)
T ss_pred CCCCHHHHHHHhhceeeE-ee----hHHH-H--HHHHHHHHhccCC-ChhHHHHHHHHHHHhhc------CChhhccccc
Confidence 344677777777777665 22 1223 3 2688999999987 77777766665555533 4677788899
Q ss_pred cHHHHHHHhhhcccchhhhhh
Q 021419 272 LVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 272 ~V~~LvelL~~~~~~~~e~aL 292 (312)
.++.|-.++.|.+..|+-.|+
T Consensus 161 l~~~L~~ll~D~~p~VVAnAl 181 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANAL 181 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHH
Confidence 999999999876655555555
Done!