BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021420
         (312 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
          Promoter Binding Protein-Like 4
          Length = 94

 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 58/74 (78%)

Query: 24 CLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRS 83
          C VD CTAD+ + + YHRRHKVCE+H+K   V + G  QRFCQQCSRFH L+EFDE KRS
Sbjct: 11 CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70

Query: 84 CRKRLDGHNRRRRK 97
          CR+RL GHN RRRK
Sbjct: 71 CRRRLAGHNERRRK 84


>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
          Promoter Binding Protein-Like 12 Lacking The Second
          Zinc- Binding Site
          Length = 60

 Score = 87.8 bits (216), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 41/55 (74%)

Query: 24 CLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFD 78
          C VD C ADL K +DYHRRHKVCEIHSK     + G  QRFCQQCSRFH LEEFD
Sbjct: 6  CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60


>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
          Promoter Binding Protein-like 7
          Length = 88

 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 1/79 (1%)

Query: 21 IPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEG 80
          +  C V  C AD+ + + YH+RH+VC   +    V + G  +R+CQQC +FH L +FDEG
Sbjct: 3  VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEG 62

Query: 81 KRSCRKRLDGH-NRRRRKP 98
          KRSCR++L+ H NRR+RKP
Sbjct: 63 KRSCRRKLERHNNRRKRKP 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,305,393
Number of Sequences: 62578
Number of extensions: 365822
Number of successful extensions: 565
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 3
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)