Query 021420
Match_columns 312
No_of_seqs 171 out of 333
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 2.9E-44 9.9E-49 290.2 0.8 89 16-104 3-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 2.6E-42 8.8E-47 276.0 -0.5 83 21-103 3-85 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1.7E-32 5.8E-37 205.8 3.1 59 20-78 2-60 (60)
4 1vk6_A NADH pyrophosphatase; 1 26.0 16 0.00055 33.1 0.3 35 37-72 101-135 (269)
5 2d8r_A THAP domain-containing 22.9 44 0.0015 25.8 2.3 13 21-33 9-21 (99)
6 1gh9_A 8.3 kDa protein (gene M 20.8 39 0.0013 25.6 1.5 28 45-75 6-33 (71)
7 4a6q_A Histone deacetylase com 17.9 24 0.00082 30.2 -0.2 29 39-78 19-47 (143)
8 2jne_A Hypothetical protein YF 15.4 69 0.0024 26.1 1.9 34 36-69 54-88 (101)
9 2jrp_A Putative cytoplasmic pr 14.5 80 0.0028 24.6 2.0 31 40-70 28-59 (81)
10 2dt7_A Splicing factor 3A subu 12.9 26 0.00087 23.6 -1.1 12 33-44 19-30 (38)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=2.9e-44 Score=290.16 Aligned_cols=89 Identities=57% Similarity=1.032 Sum_probs=80.6
Q ss_pred CCCCCCCceecCCCcccccccccccccccchhhhcCCCeEEECCeeeehhhhcccccccccccCcchhHHHHHhHHHhhh
Q 021420 16 GNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRR 95 (312)
Q Consensus 16 ~~g~~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFDg~kRSCR~rL~~hn~RR 95 (312)
++|++.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||
T Consensus 3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR 82 (94)
T 1ul4_A 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 82 (94)
T ss_dssp -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcc
Q 021420 96 RKPQPDSLS 104 (312)
Q Consensus 96 Rk~q~~~~~ 104 (312)
||+++|+.+
T Consensus 83 Rk~~~~~~~ 91 (94)
T 1ul4_A 83 RKSSGESGP 91 (94)
T ss_dssp CSCCCC---
T ss_pred ccCCCCcCC
Confidence 999999875
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=2.6e-42 Score=275.97 Aligned_cols=83 Identities=43% Similarity=0.938 Sum_probs=79.2
Q ss_pred CCceecCCCcccccccccccccccchhhhcCCCeEEECCeeeehhhhcccccccccccCcchhHHHHHhHHHhhhcCCCC
Q 021420 21 IPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 100 (312)
Q Consensus 21 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFDg~kRSCR~rL~~hn~RRRk~q~ 100 (312)
.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||++|||||++|++||+||||+++
T Consensus 3 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~ 82 (88)
T 1ul5_A 3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV 82 (88)
T ss_dssp CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred CCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred CCc
Q 021420 101 DSL 103 (312)
Q Consensus 101 ~~~ 103 (312)
++.
T Consensus 83 ~~~ 85 (88)
T 1ul5_A 83 DKG 85 (88)
T ss_dssp SSC
T ss_pred cCC
Confidence 653
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.97 E-value=1.7e-32 Score=205.79 Aligned_cols=59 Identities=66% Similarity=1.141 Sum_probs=57.1
Q ss_pred CCCceecCCCcccccccccccccccchhhhcCCCeEEECCeeeehhhhccccccccccc
Q 021420 20 QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFD 78 (312)
Q Consensus 20 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFD 78 (312)
+.++||||||++||+.+|+||+||||||+|+||++|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46799999999999999999999999999999999999999999999999999999998
No 4
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=25.95 E-value=16 Score=33.08 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=25.8
Q ss_pred ccccccccchhhhcCCCeEEECCeeeehhhhccccc
Q 021420 37 RDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFH 72 (312)
Q Consensus 37 k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH 72 (312)
..++++++-|..+- ++.+..++...+.|..|+..|
T Consensus 101 ~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 101 AEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp HHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEE
T ss_pred HhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEe
Confidence 45678888888764 455567788888899988655
No 5
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=22.88 E-value=44 Score=25.77 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=9.9
Q ss_pred CCceecCCCcccc
Q 021420 21 IPSCLVDGCTADL 33 (312)
Q Consensus 21 ~~~CqV~GC~~dL 33 (312)
...|-|.||...-
T Consensus 9 ~~~C~v~gC~n~~ 21 (99)
T 2d8r_A 9 PTNCAAAGCATTY 21 (99)
T ss_dssp CCCCCSSSCCCSC
T ss_pred CCeeEeCCCCCCC
Confidence 4469999998654
No 6
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=20.81 E-value=39 Score=25.58 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=21.9
Q ss_pred chhhhcCCCeEEECCeeeehhhhcccccccc
Q 021420 45 VCEIHSKTPKVTIHGREQRFCQQCSRFHSLE 75 (312)
Q Consensus 45 vCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~ 75 (312)
.|+ ..+..++-+|....-|+ ||+-|.+.
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 477 55667888899999998 99876654
No 7
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=17.92 E-value=24 Score=30.23 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=23.1
Q ss_pred ccccccchhhhcCCCeEEECCeeeehhhhccccccccccc
Q 021420 39 YHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFD 78 (312)
Q Consensus 39 Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFD 78 (312)
---|.++|+.+.+ -||.+=++||.++||.
T Consensus 19 ~idRektcPfLLR-----------vF~~~ng~hh~~~eF~ 47 (143)
T 4a6q_A 19 PIDREKTCPLLLR-----------VFTTNNGRHHRMDEFS 47 (143)
T ss_dssp CCCGGGSCCEEEE-----------EEEESSSSCCCGGGGC
T ss_pred CccccCCCCeEEE-----------EEecCCCCCCCHHHcc
Confidence 3468899998653 4887768999999997
No 8
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=15.38 E-value=69 Score=26.09 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=28.0
Q ss_pred cccccccccchhhhcCCCeEEEC-Ceeeehhhhcc
Q 021420 36 CRDYHRRHKVCEIHSKTPKVTIH-GREQRFCQQCS 69 (312)
Q Consensus 36 ~k~Y~rR~rvCe~H~ka~~V~v~-G~~~RFCQQC~ 69 (312)
+...|++.-.|++.-..+.|+.+ |...-|||+|.
T Consensus 54 C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~ch 88 (101)
T 2jne_A 54 CGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGH 88 (101)
T ss_dssp TCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTT
T ss_pred ccchhhccccCcchhhHHHHHHHhcCcchhhccCC
Confidence 33446788899999999988855 99999999996
No 9
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=14.51 E-value=80 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=24.3
Q ss_pred cccccchhhhcCCCeEE-ECCeeeehhhhccc
Q 021420 40 HRRHKVCEIHSKTPKVT-IHGREQRFCQQCSR 70 (312)
Q Consensus 40 ~rR~rvCe~H~ka~~V~-v~G~~~RFCQQC~r 70 (312)
|.+.-.|++.-....|. .=|...-|||+|+.
T Consensus 28 ~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~ 59 (81)
T 2jrp_A 28 FSLQALCPDCRQPLQVLKACGAVDYFCQNGHG 59 (81)
T ss_dssp EEEEEECSSSCSCCCEEEETTEEEECCTTTTC
T ss_pred CCCcccCcchhhHHHHHHhcCCcCeeeccCCC
Confidence 34555899988888777 55999999999973
No 10
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=12.92 E-value=26 Score=23.64 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=6.8
Q ss_pred cccccccccccc
Q 021420 33 LGKCRDYHRRHK 44 (312)
Q Consensus 33 Ls~~k~Y~rR~r 44 (312)
|..+|+||+||-
T Consensus 19 lk~Ike~Hrr~P 30 (38)
T 2dt7_A 19 LKQIKEFHRKHP 30 (38)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHhCC
Confidence 344566666653
Done!