BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021423
         (312 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 57  CRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVE 116
           CRIC   +G+ +  LI+PC C G+  FVH+ACL  W    +      C  CK +F +  +
Sbjct: 18  CRIC-HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRC---CELCKYEFIMETK 73

Query: 117 LFEDNS 122
           L   +S
Sbjct: 74  LSGPSS 79


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 38.1 bits (87), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 49  IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCK 108
           +E+  +P C IC E  G   +E    C C G  + VHR+CL  W ++    A   C  C 
Sbjct: 1   MEDEDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTA---CQICG 54

Query: 109 AQFHLR 114
             ++ R
Sbjct: 55  VVYNTR 60


>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
          Protein 24
          Length = 74

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 7/42 (16%)

Query: 57 CRICLENDGEPDDEL-ISPCMCKGTQQFVHRACLDHWRSVKE 97
          C +CLE D +P DEL I PC     +   HR CL  W  V++
Sbjct: 18 CAVCLE-DFKPRDELGICPC-----KHAFHRKCLIKWLEVRK 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,406,241
Number of Sequences: 62578
Number of extensions: 288216
Number of successful extensions: 596
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 4
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)