Query 021423
Match_columns 312
No_of_seqs 191 out of 772
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 02:50:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02862 5L protein; Provision 99.8 5.4E-19 1.2E-23 153.4 5.8 64 54-124 2-65 (156)
2 PHA02825 LAP/PHD finger-like p 99.8 1E-18 2.3E-23 153.5 7.5 98 50-160 4-101 (162)
3 COG5183 SSM4 Protein involved 99.7 3.5E-18 7.5E-23 177.9 5.4 121 51-178 9-131 (1175)
4 smart00744 RINGv The RING-vari 99.6 1.2E-16 2.6E-21 115.4 2.8 49 56-108 1-49 (49)
5 KOG1609 Protein involved in mR 99.6 3.2E-16 6.9E-21 145.3 4.0 223 51-311 75-317 (323)
6 PF12906 RINGv: RING-variant d 99.6 2.4E-16 5.2E-21 112.9 1.4 47 57-107 1-47 (47)
7 KOG3053 Uncharacterized conser 99.5 3.6E-15 7.8E-20 139.8 2.8 68 51-118 17-88 (293)
8 PF13639 zf-RING_2: Ring finge 96.9 0.00024 5.3E-09 49.2 -0.1 44 55-108 1-44 (44)
9 PF11793 FANCL_C: FANCL C-term 96.6 0.0014 2.9E-08 50.6 2.5 58 54-114 2-68 (70)
10 PF12861 zf-Apc11: Anaphase-pr 95.7 0.014 3E-07 47.3 4.0 55 54-114 21-84 (85)
11 PHA02929 N1R/p28-like protein; 95.6 0.013 2.9E-07 55.2 4.3 54 52-115 172-230 (238)
12 KOG4628 Predicted E3 ubiquitin 95.1 0.016 3.6E-07 57.4 3.2 50 55-114 230-280 (348)
13 PLN03208 E3 ubiquitin-protein 95.0 0.031 6.6E-07 51.4 4.3 56 51-114 15-81 (193)
14 COG5243 HRD1 HRD ubiquitin lig 94.5 0.038 8.3E-07 55.6 3.9 54 51-114 284-347 (491)
15 PF13920 zf-C3HC4_3: Zinc fing 93.7 0.026 5.7E-07 40.0 0.8 47 54-112 2-48 (50)
16 cd00162 RING RING-finger (Real 93.7 0.057 1.2E-06 35.4 2.4 44 56-110 1-44 (45)
17 COG5540 RING-finger-containing 93.5 0.048 1E-06 53.6 2.5 53 50-111 319-371 (374)
18 PHA02926 zinc finger-like prot 93.4 0.075 1.6E-06 50.2 3.4 61 50-115 166-233 (242)
19 PF12678 zf-rbx1: RING-H2 zinc 93.1 0.057 1.2E-06 41.8 1.8 45 54-108 19-73 (73)
20 KOG0802 E3 ubiquitin ligase [P 92.6 0.076 1.6E-06 54.9 2.5 52 50-111 287-340 (543)
21 smart00184 RING Ring finger. E 91.2 0.18 3.8E-06 31.7 2.2 39 57-107 1-39 (39)
22 KOG1493 Anaphase-promoting com 90.8 0.13 2.8E-06 41.4 1.5 53 56-114 22-83 (84)
23 KOG0823 Predicted E3 ubiquitin 89.4 0.59 1.3E-05 44.2 4.8 55 51-115 44-98 (230)
24 PF00097 zf-C3HC4: Zinc finger 89.1 0.25 5.5E-06 33.1 1.6 40 57-107 1-41 (41)
25 KOG0828 Predicted E3 ubiquitin 88.3 0.36 7.9E-06 50.3 2.9 58 45-111 562-633 (636)
26 smart00504 Ubox Modified RING 85.9 0.68 1.5E-05 33.4 2.5 45 56-113 3-47 (63)
27 KOG0317 Predicted E3 ubiquitin 85.9 0.8 1.7E-05 44.7 3.6 51 51-114 236-286 (293)
28 COG3763 Uncharacterized protei 85.0 2.3 4.9E-05 33.6 5.1 26 239-264 4-29 (71)
29 PF13923 zf-C3HC4_2: Zinc fing 84.8 0.43 9.2E-06 32.2 0.9 38 57-107 1-39 (39)
30 PLN02189 cellulose synthase 78.7 1.5 3.3E-05 49.2 2.8 56 51-113 31-88 (1040)
31 PRK01844 hypothetical protein; 78.5 5.2 0.00011 31.7 5.0 25 240-264 5-29 (72)
32 KOG4265 Predicted E3 ubiquitin 78.1 2.5 5.5E-05 42.2 3.9 55 50-116 286-340 (349)
33 PF10766 DUF2592: Protein of u 78.0 3.2 6.9E-05 29.5 3.3 22 238-259 7-28 (41)
34 KOG0827 Predicted E3 ubiquitin 77.6 1.7 3.7E-05 44.3 2.5 48 54-108 4-52 (465)
35 PF08114 PMP1_2: ATPase proteo 76.8 2.4 5.2E-05 30.4 2.4 23 246-269 12-34 (43)
36 KOG2927 Membrane component of 76.3 7.5 0.00016 39.1 6.6 37 238-274 233-282 (372)
37 PF14634 zf-RING_5: zinc-RING 76.2 2.1 4.5E-05 29.7 2.0 43 57-109 2-44 (44)
38 PF14570 zf-RING_4: RING/Ubox 76.2 2.1 4.5E-05 31.4 2.0 48 57-112 1-48 (48)
39 PRK00523 hypothetical protein; 73.9 8.2 0.00018 30.6 5.0 25 240-264 6-30 (72)
40 KOG0804 Cytoplasmic Zn-finger 73.8 2.1 4.5E-05 44.2 2.1 53 49-112 170-222 (493)
41 PTZ00358 hypothetical protein; 73.8 10 0.00022 38.1 6.7 33 183-222 107-139 (367)
42 PLN02436 cellulose synthase A 72.9 2.7 5.8E-05 47.5 2.8 54 52-112 34-89 (1094)
43 TIGR00599 rad18 DNA repair pro 72.6 2.4 5.2E-05 43.0 2.2 48 53-113 25-72 (397)
44 KOG0825 PHD Zn-finger protein 71.1 6.8 0.00015 43.3 5.2 18 214-231 230-247 (1134)
45 PF04120 Iron_permease: Low af 67.3 4.7 0.0001 35.2 2.6 71 238-308 18-105 (132)
46 cd07912 Tweety_N N-terminal do 66.3 7.8 0.00017 39.6 4.3 50 216-267 62-111 (418)
47 COG5219 Uncharacterized conser 66.0 3.5 7.5E-05 46.4 1.8 56 54-113 1469-1524(1525)
48 PF14569 zf-UDP: Zinc-binding 65.0 5.1 0.00011 32.3 2.2 58 50-114 5-64 (80)
49 PF12072 DUF3552: Domain of un 65.0 8.3 0.00018 35.1 3.8 24 241-264 2-25 (201)
50 COG4792 EscU Type III secretor 64.8 12 0.00025 37.3 5.0 52 230-283 168-219 (349)
51 PF05478 Prominin: Prominin; 64.8 21 0.00045 39.0 7.5 58 234-291 138-217 (806)
52 PF05805 L6_membrane: L6 membr 64.0 48 0.001 30.8 8.6 28 238-265 89-116 (195)
53 PF10272 Tmpp129: Putative tra 63.7 8.8 0.00019 38.6 4.1 39 73-114 307-353 (358)
54 PF03672 UPF0154: Uncharacteri 62.4 12 0.00027 29.0 3.8 20 245-264 3-22 (64)
55 KOG1785 Tyrosine kinase negati 60.6 3.4 7.5E-05 42.4 0.6 52 51-113 366-417 (563)
56 KOG0802 E3 ubiquitin ligase [P 58.3 7.1 0.00015 40.6 2.4 47 51-114 476-522 (543)
57 PLN02638 cellulose synthase A 58.1 12 0.00025 42.6 4.1 55 51-112 14-70 (1079)
58 PHA03029 hypothetical protein; 57.7 17 0.00037 29.4 3.9 23 239-261 12-34 (92)
59 COG5194 APC11 Component of SCF 57.3 12 0.00026 30.5 3.1 29 82-115 56-84 (88)
60 TIGR01732 tiny_TM_bacill conse 56.0 10 0.00022 24.6 2.0 18 238-255 8-25 (26)
61 PF05883 Baculo_RING: Baculovi 54.1 3.8 8.3E-05 35.9 -0.2 43 53-95 25-68 (134)
62 PF06570 DUF1129: Protein of u 52.9 29 0.00063 31.5 5.2 16 260-275 189-204 (206)
63 PLN02195 cellulose synthase A 51.7 13 0.00029 41.8 3.3 53 53-112 5-59 (977)
64 KOG2930 SCF ubiquitin ligase, 51.5 12 0.00025 32.0 2.2 30 81-115 82-111 (114)
65 TIGR01149 mtrG N5-methyltetrah 50.8 14 0.0003 29.2 2.3 14 251-264 47-60 (70)
66 PRK01026 tetrahydromethanopter 50.2 14 0.0003 29.7 2.3 14 251-264 50-63 (77)
67 COG5594 Uncharacterized integr 48.8 19 0.0004 39.9 3.8 32 164-201 656-688 (827)
68 PF06305 DUF1049: Protein of u 48.7 42 0.0009 24.7 4.7 33 244-277 23-55 (68)
69 PF13994 PgaD: PgaD-like prote 48.7 38 0.00083 29.0 5.1 43 265-310 82-124 (138)
70 PF05478 Prominin: Prominin; 48.4 20 0.00043 39.2 4.0 36 234-269 134-169 (806)
71 PRK11380 hypothetical protein; 46.6 43 0.00094 33.8 5.7 43 253-306 79-121 (353)
72 KOG1645 RING-finger-containing 45.0 17 0.00036 37.5 2.6 55 53-114 3-58 (463)
73 COG3763 Uncharacterized protei 44.8 53 0.0012 26.1 4.8 29 243-271 4-32 (71)
74 PF03839 Sec62: Translocation 44.6 51 0.0011 31.2 5.6 14 238-251 154-167 (224)
75 PF04210 MtrG: Tetrahydrometha 44.2 20 0.00043 28.3 2.3 14 251-264 47-60 (70)
76 PRK14584 hmsS hemin storage sy 44.1 94 0.002 27.9 6.9 55 248-308 66-120 (153)
77 PF04689 S1FA: DNA binding pro 43.6 16 0.00034 28.7 1.6 36 247-282 17-52 (69)
78 KOG4112 Signal peptidase subun 43.4 24 0.00053 29.5 2.9 17 243-259 30-46 (101)
79 PLN02400 cellulose synthase 42.6 19 0.0004 41.1 2.7 55 52-113 34-90 (1085)
80 PF13829 DUF4191: Domain of un 42.2 37 0.0008 32.2 4.3 52 246-297 53-105 (224)
81 PF09680 Tiny_TM_bacill: Prote 41.9 15 0.00034 23.4 1.1 18 237-254 5-22 (24)
82 KOG4414 COP9 signalosome, subu 41.3 14 0.00031 33.5 1.3 12 262-273 81-92 (197)
83 PF10821 DUF2567: Protein of u 41.2 37 0.00079 30.9 3.9 18 247-264 50-67 (167)
84 PF13253 DUF4044: Protein of u 40.4 35 0.00075 23.6 2.8 22 239-260 14-35 (35)
85 PF07010 Endomucin: Endomucin; 39.7 28 0.0006 33.5 3.0 18 238-255 195-212 (259)
86 KOG4445 Uncharacterized conser 37.2 22 0.00049 35.4 2.0 57 54-115 115-189 (368)
87 KOG3882 Tetraspanin family int 36.8 1.1E+02 0.0024 27.7 6.4 22 180-201 51-72 (237)
88 PF13445 zf-RING_UBOX: RING-ty 36.8 19 0.00042 25.4 1.2 42 57-104 1-42 (43)
89 TIGR00869 sec62 protein transl 36.7 1.1E+02 0.0024 29.2 6.4 17 238-254 162-178 (232)
90 PF15227 zf-C3HC4_4: zinc fing 35.5 17 0.00036 25.3 0.6 42 57-107 1-42 (42)
91 PF14802 TMEM192: TMEM192 fami 34.7 82 0.0018 29.9 5.3 24 257-280 68-91 (236)
92 PLN02915 cellulose synthase A 34.5 36 0.00077 38.8 3.3 56 51-113 12-69 (1044)
93 COG4068 Uncharacterized protei 34.4 12 0.00026 28.9 -0.2 15 101-115 8-22 (64)
94 PF12751 Vac7: Vacuolar segreg 33.7 40 0.00086 34.4 3.2 18 245-262 310-327 (387)
95 PRK00523 hypothetical protein; 33.5 1E+02 0.0022 24.5 4.8 31 241-271 3-33 (72)
96 PRK01844 hypothetical protein; 33.3 1.1E+02 0.0023 24.5 4.8 30 242-271 3-32 (72)
97 PRK11677 hypothetical protein; 33.1 38 0.00083 29.6 2.6 20 244-263 5-24 (134)
98 TIGR00570 cdk7 CDK-activating 32.4 46 0.00099 33.0 3.3 53 53-114 2-56 (309)
99 COG4171 SapC ABC-type antimicr 31.6 42 0.00092 32.5 2.8 51 242-292 147-198 (296)
100 PF05680 ATP-synt_E: ATP synth 31.5 33 0.00071 27.8 1.8 12 247-258 16-27 (86)
101 PRK05113 electron transport co 30.9 59 0.0013 29.5 3.6 21 241-261 4-24 (191)
102 PF07800 DUF1644: Protein of u 30.2 64 0.0014 29.3 3.6 41 54-96 2-49 (162)
103 PF11742 DUF3302: Protein of u 30.1 1.2E+02 0.0026 24.4 4.8 30 244-273 7-36 (78)
104 PRK09823 putative inner membra 30.0 1E+02 0.0022 27.7 4.7 33 239-271 43-86 (160)
105 TIGR01944 rnfB electron transp 30.0 52 0.0011 28.9 3.0 21 241-261 2-22 (165)
106 PF12072 DUF3552: Domain of un 29.7 69 0.0015 29.1 3.8 28 245-272 2-29 (201)
107 PRK12705 hypothetical protein; 29.5 68 0.0015 33.8 4.2 29 238-266 1-29 (508)
108 TIGR03818 MotA1 flagellar moto 29.2 54 0.0012 31.8 3.2 46 247-292 203-252 (282)
109 PF09605 Trep_Strep: Hypotheti 29.2 85 0.0018 28.3 4.3 22 252-273 164-185 (186)
110 PF03616 Glt_symporter: Sodium 28.9 1.2E+02 0.0026 30.2 5.7 29 244-272 159-187 (368)
111 cd00922 Cyt_c_Oxidase_IV Cytoc 28.4 67 0.0014 28.0 3.3 19 267-285 93-112 (136)
112 PF08999 SP_C-Propep: Surfacta 27.9 86 0.0019 25.8 3.6 19 250-271 46-64 (93)
113 PF02891 zf-MIZ: MIZ/SP-RING z 27.8 29 0.00062 25.1 0.8 39 69-110 10-50 (50)
114 TIGR02185 Trep_Strep conserved 27.2 97 0.0021 28.0 4.3 22 252-273 167-188 (189)
115 PF09788 Tmemb_55A: Transmembr 27.1 88 0.0019 30.4 4.1 15 101-115 157-171 (256)
116 PRK12721 secretion system appa 26.9 1.1E+02 0.0023 30.6 4.9 57 248-309 184-240 (349)
117 TIGR02230 ATPase_gene1 F0F1-AT 26.8 91 0.002 26.1 3.7 22 244-265 76-97 (100)
118 PF06295 DUF1043: Protein of u 26.3 59 0.0013 27.7 2.6 18 246-263 3-20 (128)
119 PRK13726 conjugal transfer pil 26.0 2.1E+02 0.0045 26.2 6.3 48 261-308 35-99 (188)
120 PRK07118 ferredoxin; Validated 25.8 70 0.0015 30.8 3.3 28 241-274 4-31 (280)
121 PF04532 DUF587: Protein of un 25.6 22 0.00047 33.4 -0.2 28 60-87 93-121 (215)
122 PF00672 HAMP: HAMP domain; I 25.6 46 0.00099 23.9 1.6 22 244-265 4-25 (70)
123 COG2976 Uncharacterized protei 25.6 72 0.0016 30.0 3.2 12 260-271 34-45 (207)
124 PRK05702 flhB flagellar biosyn 25.6 1.2E+02 0.0025 30.5 4.9 58 248-310 191-248 (359)
125 PF02060 ISK_Channel: Slow vol 24.8 89 0.0019 27.4 3.4 13 277-289 74-86 (129)
126 PF06809 NPDC1: Neural prolife 24.5 17 0.00038 36.2 -1.1 34 242-277 200-233 (341)
127 COG5175 MOT2 Transcriptional r 24.4 37 0.0008 34.5 1.1 54 53-114 13-66 (480)
128 COG5416 Uncharacterized integr 24.4 1.4E+02 0.0031 25.0 4.4 24 243-269 63-86 (98)
129 COG5236 Uncharacterized conser 24.4 1.7E+02 0.0037 30.0 5.7 51 51-115 58-111 (493)
130 PF01102 Glycophorin_A: Glycop 24.3 1.1E+02 0.0024 26.3 3.9 16 239-254 66-81 (122)
131 KOG0956 PHD finger protein AF1 24.3 46 0.00099 36.7 1.9 69 56-128 7-88 (900)
132 PRK13109 flhB flagellar biosyn 23.9 1.3E+02 0.0028 30.2 4.9 60 246-310 191-250 (358)
133 PF05309 TraE: TraE protein; 23.7 2.8E+02 0.006 24.7 6.5 47 245-291 19-65 (187)
134 COG3765 WzzB Chain length dete 23.7 70 0.0015 32.3 2.9 21 240-260 34-54 (347)
135 COG4025 Predicted membrane pro 23.5 97 0.0021 30.1 3.7 16 181-196 159-174 (284)
136 PF12216 m04gp34like: Immune e 22.9 36 0.00077 33.1 0.7 19 238-256 238-256 (272)
137 KOG4692 Predicted E3 ubiquitin 22.7 74 0.0016 32.6 2.9 48 51-114 419-469 (489)
138 TIGR01185 devC DevC protein. T 22.5 1.6E+02 0.0034 29.2 5.1 61 238-308 20-80 (380)
139 COG3105 Uncharacterized protei 22.1 93 0.002 27.5 3.0 14 247-260 13-26 (138)
140 COG5432 RAD18 RING-finger-cont 21.9 38 0.00083 33.8 0.7 54 51-117 22-75 (391)
141 PRK09108 type III secretion sy 21.8 1.5E+02 0.0032 29.7 4.8 62 243-309 181-242 (353)
142 PF11772 EpuA: DNA-directed RN 21.7 1.1E+02 0.0023 22.3 2.8 22 155-176 20-42 (47)
143 PRK09110 flagellar motor prote 21.7 1.1E+02 0.0024 29.7 3.8 46 247-292 203-252 (283)
144 KOG3533 Inositol 1,4,5-trispho 21.6 1.3E+02 0.0028 36.0 4.8 45 223-267 2522-2574(2706)
145 PF07332 DUF1469: Protein of u 21.6 1.2E+02 0.0027 24.6 3.6 19 246-264 73-91 (121)
146 PHA02047 phage lambda Rz1-like 21.6 1E+02 0.0023 25.9 3.1 21 240-260 5-25 (101)
147 PF13807 GNVR: G-rich domain o 21.6 1.2E+02 0.0026 23.4 3.3 17 245-261 62-78 (82)
148 COG2165 PulG Type II secretory 21.6 1.2E+02 0.0025 24.3 3.4 20 245-264 16-35 (149)
149 PF13179 DUF4006: Family of un 21.4 99 0.0021 24.2 2.7 15 277-291 39-53 (66)
150 PF07856 Orai-1: Mediator of C 21.4 1.4E+02 0.0031 27.0 4.3 34 167-201 98-131 (175)
151 TIGR00328 flhB flagellar biosy 21.4 1.6E+02 0.0034 29.4 4.9 58 248-310 184-241 (347)
152 COG3167 PilO Tfp pilus assembl 21.3 1.2E+02 0.0026 28.5 3.8 27 240-266 25-51 (211)
153 PF11808 DUF3329: Domain of un 21.2 2.7E+02 0.0058 22.2 5.4 27 243-269 14-44 (90)
154 PF09889 DUF2116: Uncharacteri 21.1 33 0.00071 26.1 0.1 14 102-115 4-17 (59)
155 PF06305 DUF1049: Protein of u 21.1 3.1E+02 0.0067 20.0 5.3 31 239-269 22-52 (68)
156 KOG1734 Predicted RING-contain 21.0 24 0.00051 34.8 -0.9 69 51-127 221-294 (328)
157 MTH00025 ATP8 ATP synthase F0 21.0 2.2E+02 0.0047 22.4 4.6 13 274-286 52-64 (70)
158 PLN03160 uncharacterized prote 20.9 49 0.0011 30.6 1.2 10 213-222 32-41 (219)
159 PF11808 DUF3329: Domain of un 20.6 2E+02 0.0043 23.0 4.5 26 252-279 32-59 (90)
160 PF14023 DUF4239: Protein of u 20.5 98 0.0021 27.7 3.0 17 248-264 2-18 (209)
161 PHA03375 hypothetical protein; 20.4 34 0.00075 37.5 0.1 28 60-87 99-127 (844)
162 PF10853 DUF2650: Protein of u 20.4 1.1E+02 0.0024 21.4 2.6 24 230-253 14-37 (38)
163 PF10367 Vps39_2: Vacuolar sor 20.3 40 0.00088 26.3 0.4 34 52-91 76-109 (109)
164 smart00249 PHD PHD zinc finger 20.1 40 0.00087 21.9 0.3 30 56-90 1-30 (47)
165 PRK08156 type III secretion sy 20.0 1.8E+02 0.0038 29.4 4.9 57 248-309 179-235 (361)
166 PF02936 COX4: Cytochrome c ox 20.0 1.2E+02 0.0025 26.7 3.2 6 267-272 93-98 (142)
No 1
>PHA02862 5L protein; Provisional
Probab=99.76 E-value=5.4e-19 Score=153.38 Aligned_cols=64 Identities=22% Similarity=0.563 Sum_probs=56.5
Q ss_pred CCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeeecccccccc
Q 021423 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWR 124 (312)
Q Consensus 54 ~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~~~~~~~W~ 124 (312)
.++||||+++++ +.++||+|+||.||||++||++|++.+ ++..||+|+++|.++.+.++.++|+
T Consensus 2 ~diCWIC~~~~~----e~~~PC~C~GS~K~VHq~CL~~WIn~S---~k~~CeLCkteY~Ik~~yKpf~kW~ 65 (156)
T PHA02862 2 SDICWICNDVCD----ERNNFCGCNEEYKVVHIKCMQLWINYS---KKKECNLCKTKYNIKKTYVSFKKWN 65 (156)
T ss_pred CCEEEEecCcCC----CCcccccccCcchhHHHHHHHHHHhcC---CCcCccCCCCeEEEEEccccHHHhh
Confidence 468999998753 226999999999999999999999876 4689999999999998888999997
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.76 E-value=1e-18 Score=153.50 Aligned_cols=98 Identities=22% Similarity=0.494 Sum_probs=73.3
Q ss_pred cCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeeecccccccccccee
Q 021423 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFR 129 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~~~~~~~W~~lk~~ 129 (312)
.+..++.||||++++ +++.+||+|+||.+|||++||++|+..++ ...||+|+++|.++...++.++|.--+..
T Consensus 4 ~s~~~~~CRIC~~~~----~~~~~PC~CkGs~k~VH~sCL~rWi~~s~---~~~CeiC~~~Y~i~~~~kpl~~W~~~~~d 76 (162)
T PHA02825 4 VSLMDKCCWICKDEY----DVVTNYCNCKNENKIVHKECLEEWINTSK---NKSCKICNGPYNIKKNYKKCTKWRCSFRD 76 (162)
T ss_pred cCCCCCeeEecCCCC----CCccCCcccCCCchHHHHHHHHHHHhcCC---CCcccccCCeEEEEEecCCCccccccCcc
Confidence 456688999999764 34679999999999999999999999874 57999999999999888899999765543
Q ss_pred EeeehhhHHHHHHHHHHHHHHhhheeEEecc
Q 021423 130 LFVARDVFFVFLAVQTIIAAMGGFAYLMDKD 160 (312)
Q Consensus 130 l~v~r~i~lifL~v~~viA~l~~l~yLi~~~ 160 (312)
.- +.++++....++++.++ |++.+.
T Consensus 77 c~---~~~l~~~llcl~~~~i~---~~l~~~ 101 (162)
T PHA02825 77 CH---DSAIVNSLLCLIVGGIT---YLLVSF 101 (162)
T ss_pred hh---hHHHHHHHHHHHHhhhh---heeeeh
Confidence 22 22334444344444444 666554
No 3
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.72 E-value=3.5e-18 Score=177.89 Aligned_cols=121 Identities=23% Similarity=0.503 Sum_probs=86.6
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeeeccccccccccceeE
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFRL 130 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~~~~~~~W~~lk~~l 130 (312)
+.+...||||+.++ .+++||.+||||+||.||+|++||..|+..+ ++.+|++||++|+++. .++.++++++++++
T Consensus 9 N~d~~~CRICr~e~-~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s---~~~kCdiChy~~~Fk~-IY~e~mP~~IPfsi 83 (1175)
T COG5183 9 NEDKRSCRICRTED-IRDDPLFHPCKCSGSIKYIHRECLMEWMECS---GTKKCDICHYEYKFKD-IYKEDMPQIIPFSI 83 (1175)
T ss_pred CccchhceeecCCC-CCCCcCcccccccchhHHHHHHHHHHHHhcC---CCcceeeecceeeeee-ecccCCCcccceeh
Confidence 44458999999765 6899999999999999999999999999976 4789999999999984 67789999999998
Q ss_pred eeehhhHHHHHH--HHHHHHHHhhheeEEeccchhhccccchhhhhccCC
Q 021423 131 FVARDVFFVFLA--VQTIIAAMGGFAYLMDKDGAFRNSFSDGWDRILSKH 178 (312)
Q Consensus 131 ~v~r~i~lifL~--v~~viA~l~~l~yLi~~~~~f~n~~S~~w~riL~~~ 178 (312)
+.+.-..-.+-+ +++.+. ++.+.+.+. .-..||++++.++..++.+
T Consensus 84 L~rk~a~t~~~~trvllT~~-~w~VL~~v~-~~~Vwn~~G~~YTm~~~~s 131 (1175)
T COG5183 84 LIRKVADTGWKATRVLLTIG-LWCVLQMVK-WMGVWNMFGKLYTMMLDGS 131 (1175)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHhhhcceeeeeecCC
Confidence 875432222211 111111 011111111 1135788998888888743
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.63 E-value=1.2e-16 Score=115.41 Aligned_cols=49 Identities=43% Similarity=1.112 Sum_probs=43.5
Q ss_pred ceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccC
Q 021423 56 CCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCK 108 (312)
Q Consensus 56 ~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk 108 (312)
+||||++ ++++++++++||+|+||++|||++||++|+..++ ...||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~---~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESG---NKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC---CCcCCCCC
Confidence 5999998 3456899999999999999999999999999874 35999996
No 5
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.61 E-value=3.2e-16 Score=145.30 Aligned_cols=223 Identities=26% Similarity=0.338 Sum_probs=121.7
Q ss_pred CCCCCceeEeccCCCCC-CCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee-eeccccccccccc-
Q 021423 51 NGSLPCCRICLENDGEP-DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR-VELFEDNSWRKIK- 127 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~-~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~-~~~~~~~~W~~lk- 127 (312)
+.+++.||||+.+.++. +.+++.||.|+|+.+|||+.|+++|+..++ +..||+|++.|... ++.++...|.+..
T Consensus 75 ~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~---~~~CeiC~~~~~~~~~~~~~~~~~~~~~~ 151 (323)
T KOG1609|consen 75 PSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKG---NITCEICKSFFINVGTKLKPLIVISKVRS 151 (323)
T ss_pred CCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcccc---Ceeeecccccceecceeecceeehhhhhh
Confidence 44468999999865432 128999999999999999999999999774 57999999999987 3344445554432
Q ss_pred ----eeEeeehhhHHHHHHHHHHHHHHhhheeEEeccchhhccccchhhhhccCCCcceeehhhHHHHHHHhhhhceeee
Q 021423 128 ----FRLFVARDVFFVFLAVQTIIAAMGGFAYLMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVMAFFVLLGFFGLILH 203 (312)
Q Consensus 128 ----~~l~v~r~i~lifL~v~~viA~l~~l~yLi~~~~~f~n~~S~~w~riL~~~~~~F~~~~gvv~F~~lvg~~Glivh 203 (312)
.+.+... ..+.+...++.......++... .+...+... ... .+.+++.
T Consensus 152 ~~~~~~~~~~~----~~~~~~~~~~i~~s~~~~~~~~-~~~~~~~~~--~~~--~~~~~~~------------------- 203 (323)
T KOG1609|consen 152 GALSERTLSGM----ILLKVALLVAIIVSVLPLLLGL-LFELVLGVP--SLV--VESPLAN------------------- 203 (323)
T ss_pred Hhhhheeeehh----hhhhhhhhheeeEEeehhhhhh-hHHHhcccc--ccc--cCCCccC-------------------
Confidence 2222211 1111111111100000011000 000000000 000 0111111
Q ss_pred cccCCCCCcccccccccCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhccchhcccc
Q 021423 204 CSSFNTNDPRMAGCQNCCYGWGVLDCFPASMEACFALVIVFVVIFAILGIAYGFL--AATMAIQKIWQKHYHILTKKELT 281 (312)
Q Consensus 204 ~~~~~~~~~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~i~g~~~~~~--~~~~~~~ri~~r~y~~l~k~~lt 281 (312)
.+....+..+..+..+.+-........-...+.++++++....+.... .+.+..|+.++|+++.+-++.+|
T Consensus 204 -------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (323)
T KOG1609|consen 204 -------PLALVALGLLGFKIWIFIILSGYIFILKSLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVGYLLANSLT 276 (323)
T ss_pred -------chhheeecceechHHHHHHHHHHHHHHHHHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcceeEEEecccc
Confidence 111112222222221111111112222333344444444444444444 47788899999999999999999
Q ss_pred cceeee---cCCCc--------cCCCCCChHHHHHHhhhcC
Q 021423 282 KEYVVE---DLHGS--------YTPPKLDSEHEERLKMLKL 311 (312)
Q Consensus 282 k~~~v~---d~~~~--------~~~~~l~~~~~~~l~~l~l 311 (312)
..|.+. +..++ +.++.+..++...+|+..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (323)
T KOG1609|consen 277 PLYIVSLLMFIVISRLGLSSLEMSVPRLATLVLSSLKTVRL 317 (323)
T ss_pred eeeecccHHHHhhhhhhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999997 44333 5678899999988888754
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.59 E-value=2.4e-16 Score=112.93 Aligned_cols=47 Identities=49% Similarity=1.180 Sum_probs=36.4
Q ss_pred eeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCccccccc
Q 021423 57 CRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTC 107 (312)
Q Consensus 57 CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElC 107 (312)
||||+++++ ++++|++||+|+||++|||++||++|+..++ ...||+|
T Consensus 1 CrIC~~~~~-~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~---~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEE-EDEPLISPCRCKGSMKYVHRSCLERWIRESG---NRKCEIC 47 (47)
T ss_dssp ETTTTEE-S-SSS-EE-SSS-SSCCGSEECCHHHHHHHHHT----SB-TTT
T ss_pred CeEeCCcCC-CCCceecccccCCCcchhHHHHHHHHHHhcC---CCcCCCC
Confidence 899998864 3458999999999999999999999999874 4679998
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=3.6e-15 Score=139.77 Aligned_cols=68 Identities=26% Similarity=0.777 Sum_probs=57.3
Q ss_pred CCCCCceeEeccCCCCCC-CCcccccccCCCCcccchhhHHHHHHhhcC---CCcccccccCceeeeeeecc
Q 021423 51 NGSLPCCRICLENDGEPD-DELISPCMCKGTQQFVHRACLDHWRSVKEG---FAFSHCTTCKAQFHLRVELF 118 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~-~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~---~~~~~CElCk~~Y~~~~~~~ 118 (312)
.+.++.||||+..++|.. ..+++||+|+||.||||++||.+|+.+|+. .++..|++|+++|.+..+..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l 88 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQL 88 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecccc
Confidence 455789999998876543 568999999999999999999999998853 47789999999999986443
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.86 E-value=0.00024 Score=49.15 Aligned_cols=44 Identities=30% Similarity=0.829 Sum_probs=31.8
Q ss_pred CceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccC
Q 021423 55 PCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCK 108 (312)
Q Consensus 55 ~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk 108 (312)
+.|-||+++-.+.+.....| | ....|.+|+.+|+..+ ..|++|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~--C---~H~fh~~Ci~~~~~~~-----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP--C---GHVFHRSCIKEWLKRN-----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET--T---SEEEEHHHHHHHHHHS-----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc--C---CCeeCHHHHHHHHHhC-----CcCCccC
Confidence 36899998764434455566 5 4889999999999874 4999995
No 9
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.64 E-value=0.0014 Score=50.59 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=27.9
Q ss_pred CCceeEeccCCCCCCCCcc---cccccCCCCcccchhhHHHHHHhhcCC------CcccccccCceeeee
Q 021423 54 LPCCRICLENDGEPDDELI---SPCMCKGTQQFVHRACLDHWRSVKEGF------AFSHCTTCKAQFHLR 114 (312)
Q Consensus 54 ~~~CRIC~~~e~~~~~~LI---sPC~CkGS~kyVH~~CL~~Wl~~s~~~------~~~~CElCk~~Y~~~ 114 (312)
+..|.||++...+.++... ...+| .+..|..||.+|+....+. -.-.|+.|+.+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C---~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSC---GKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCccc---CCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 3579999986432222222 33578 5889999999999865321 234699999998765
No 10
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.69 E-value=0.014 Score=47.31 Aligned_cols=55 Identities=24% Similarity=0.556 Sum_probs=39.0
Q ss_pred CCceeEeccCCCC-------C--CCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 54 LPCCRICLENDGE-------P--DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 54 ~~~CRIC~~~e~~-------~--~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
.+.|-||+...+. + +-|++ =+.| ..-.|..|+.+|+++.+ .+..|++|+.+|+++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C---~H~FH~hCI~kWl~~~~--~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKC---SHNFHMHCILKWLSTQS--SKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccC---ccHHHHHHHHHHHcccc--CCCCCCCcCCeeeeC
Confidence 6688888865431 1 12222 2466 47799999999998753 256999999999875
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.64 E-value=0.013 Score=55.22 Aligned_cols=54 Identities=24% Similarity=0.614 Sum_probs=38.6
Q ss_pred CCCCceeEeccCCCCCCC-----CcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 52 GSLPCCRICLENDGEPDD-----ELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~-----~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
.....|-||++...++.. ..+.||. ...|..|+.+|+..+ ..|++|+.++....
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~-----~tCPlCR~~~~~v~ 230 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK-----NTCPVCRTPFISVI 230 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC-----CCCCCCCCEeeEEe
Confidence 446799999986432211 2345553 789999999999743 58999999988653
No 12
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.016 Score=57.38 Aligned_cols=50 Identities=34% Similarity=0.803 Sum_probs=39.2
Q ss_pred CceeEeccCCCCCCCCc-ccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 55 PCCRICLENDGEPDDEL-ISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 55 ~~CRIC~~~e~~~~~~L-IsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..|-||+|+-. +++.+ +-||+ ...|..|.+.|+...+ ..|++||......
T Consensus 230 ~~CaIClEdY~-~GdklRiLPC~-----H~FH~~CIDpWL~~~r----~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYE-KGDKLRILPCS-----HKFHVNCIDPWLTQTR----TFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccc-cCCeeeEecCC-----CchhhccchhhHhhcC----ccCCCCCCcCCCC
Confidence 79999999874 44444 68986 6789999999998753 4799999965443
No 13
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=94.97 E-value=0.031 Score=51.44 Aligned_cols=56 Identities=21% Similarity=0.546 Sum_probs=41.7
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhc-----------CCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKE-----------GFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~-----------~~~~~~CElCk~~Y~~~ 114 (312)
.++.-.|-||++.. .++.+.||. ...+..||.+|+..+. ..+...|++|+.++...
T Consensus 15 ~~~~~~CpICld~~---~dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQV---RDPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcC---CCcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 44567899999864 478888864 6678899999986432 11356899999998654
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.038 Score=55.57 Aligned_cols=54 Identities=26% Similarity=0.640 Sum_probs=39.7
Q ss_pred CCCCCceeEeccCCCCCC----------CCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPD----------DELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~----------~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..+...|-||.++--.++ .|-.-||. ...|-.||+.|.+.+ ..|++|+.+..+.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERq-----QTCPICr~p~ifd 347 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQ-----QTCPICRRPVIFD 347 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhc-----cCCCcccCccccc
Confidence 555679999998722211 34456775 679999999999854 5999999995554
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=93.70 E-value=0.026 Score=40.01 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=35.3
Q ss_pred CCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 54 ~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
...|.||++.. .+..+.||+= ..+-..|+.+|+.. ...|++|+.++.
T Consensus 2 ~~~C~iC~~~~---~~~~~~pCgH----~~~C~~C~~~~~~~-----~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENP---RDVVLLPCGH----LCFCEECAERLLKR-----KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSB---SSEEEETTCE----EEEEHHHHHHHHHT-----TSBBTTTTBB-S
T ss_pred cCCCccCCccC---CceEEeCCCC----hHHHHHHhHHhccc-----CCCCCcCChhhc
Confidence 35899999864 4788899872 33788999999983 469999998864
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=93.68 E-value=0.057 Score=35.36 Aligned_cols=44 Identities=30% Similarity=0.773 Sum_probs=30.6
Q ss_pred ceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 56 CCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 56 ~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
.|-||++... ....+.||. ...|..|+.+|+... ...|++|+.+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~-----H~~c~~C~~~~~~~~----~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCG-----HVFCRSCIDKWLKSG----KNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh--CceEecCCC-----ChhcHHHHHHHHHhC----cCCCCCCCCc
Confidence 4789987641 233344554 558999999999862 3589999875
No 17
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.048 Score=53.57 Aligned_cols=53 Identities=26% Similarity=0.547 Sum_probs=40.5
Q ss_pred cCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCcee
Q 021423 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQF 111 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y 111 (312)
..+-+-.|-||.+.-...+.-.+.||+ .-.|..|+.+|+..- +.+|++|+++.
T Consensus 319 ea~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y----~~~CPvCrt~i 371 (374)
T COG5540 319 EADKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGY----SNKCPVCRTAI 371 (374)
T ss_pred hcCCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhh----cccCCccCCCC
Confidence 455668999999876433444578987 668999999999832 35999999875
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=93.36 E-value=0.075 Score=50.22 Aligned_cols=61 Identities=20% Similarity=0.420 Sum_probs=43.0
Q ss_pred cCCCCCceeEeccCCCC------CCCCcccccccCCCCcccchhhHHHHHHhhc-CCCcccccccCceeeeee
Q 021423 50 ENGSLPCCRICLENDGE------PDDELISPCMCKGTQQFVHRACLDHWRSVKE-GFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~------~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~-~~~~~~CElCk~~Y~~~~ 115 (312)
..+....|-||++.--+ ..-.++.||. ......|+.+|...+. ......|++|+.+|..-+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 35567899999986322 1134667775 5677899999998642 223578999999998654
No 19
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=93.11 E-value=0.057 Score=41.76 Aligned_cols=45 Identities=27% Similarity=0.729 Sum_probs=29.3
Q ss_pred CCceeEeccCCCCC-------C--CC-cccccccCCCCcccchhhHHHHHHhhcCCCcccccccC
Q 021423 54 LPCCRICLENDGEP-------D--DE-LISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCK 108 (312)
Q Consensus 54 ~~~CRIC~~~e~~~-------~--~~-LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk 108 (312)
.+.|-||++.-.+. + -+ ...+ | ....|..||.+|+..+ ..|++|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~--C---~H~FH~~Ci~~Wl~~~-----~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP--C---GHIFHFHCISQWLKQN-----NTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET--T---SEEEEHHHHHHHHTTS-----SB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc--c---CCCEEHHHHHHHHhcC-----CcCCCCC
Confidence 44599999765321 1 11 1234 3 4779999999999754 4999995
No 20
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.076 Score=54.92 Aligned_cols=52 Identities=29% Similarity=0.579 Sum_probs=40.0
Q ss_pred cCCCCCceeEeccCCCCCCC--CcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCcee
Q 021423 50 ENGSLPCCRICLENDGEPDD--ELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQF 111 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~~~~--~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y 111 (312)
.......|.||.++-....+ +-..||. .-.|..||++|+..+ ..|++|+..+
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~-----qtCP~CR~~~ 340 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQ-----QTCPTCRTVL 340 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHh-----CcCCcchhhh
Confidence 35557899999987643333 6677774 789999999999874 5999999943
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=91.20 E-value=0.18 Score=31.74 Aligned_cols=39 Identities=33% Similarity=0.870 Sum_probs=28.4
Q ss_pred eeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCccccccc
Q 021423 57 CRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTC 107 (312)
Q Consensus 57 CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElC 107 (312)
|.||++.. .+..+.||. ...|..|+.+|+... ...|++|
T Consensus 1 C~iC~~~~---~~~~~~~C~-----H~~c~~C~~~~~~~~----~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCG-----HTFCRSCIRKWLKSG----NNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCC-----ChHHHHHHHHHHHhC----cCCCCCC
Confidence 67898763 467778865 447999999999822 3578776
No 22
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=0.13 Score=41.37 Aligned_cols=53 Identities=21% Similarity=0.554 Sum_probs=38.9
Q ss_pred ceeEeccCCCC---------CCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 56 CCRICLENDGE---------PDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 56 ~CRIC~~~e~~---------~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
.|-||+...+. ++-||+-- .| ..-.|.-|..+|++.+.+ +..|+.|+.+|++.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C---~h~fh~hCI~~wl~~~ts--q~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YC---LHAFHAHCILKWLNTPTS--QGQCPMCRQTWQFK 83 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HH---HHHHHHHHHHHHhcCccc--cccCCcchheeEec
Confidence 88888865421 23455433 55 466899999999997753 58999999999874
No 23
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.37 E-value=0.59 Score=44.17 Aligned_cols=55 Identities=25% Similarity=0.677 Sum_probs=42.7
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
.+..-.|-||++.. .+|.+++|. ...==.||-+|+..+.+ ...|++||.......
T Consensus 44 ~~~~FdCNICLd~a---kdPVvTlCG-----HLFCWpClyqWl~~~~~--~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA---KDPVVTLCG-----HLFCWPCLYQWLQTRPN--SKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeecccc---CCCEEeecc-----cceehHHHHHHHhhcCC--CeeCCccccccccce
Confidence 45667899999764 599999996 22234699999998754 578999999988763
No 24
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=89.08 E-value=0.25 Score=33.14 Aligned_cols=40 Identities=35% Similarity=0.803 Sum_probs=30.2
Q ss_pred eeEeccCCCCCCCCc-ccccccCCCCcccchhhHHHHHHhhcCCCccccccc
Q 021423 57 CRICLENDGEPDDEL-ISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTC 107 (312)
Q Consensus 57 CRIC~~~e~~~~~~L-IsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElC 107 (312)
|.||++... ++. +.||. ...+..|+.+|+..+ +...|++|
T Consensus 1 C~iC~~~~~---~~~~~~~C~-----H~fC~~C~~~~~~~~---~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE---DPVILLPCG-----HSFCRDCLRKWLENS---GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS---SEEEETTTS-----EEEEHHHHHHHHHHT---SSSBTTTT
T ss_pred CCcCCcccc---CCCEEecCC-----CcchHHHHHHHHHhc---CCccCCcC
Confidence 678987642 444 78886 669999999999863 34679887
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.29 E-value=0.36 Score=50.26 Aligned_cols=58 Identities=21% Similarity=0.536 Sum_probs=41.5
Q ss_pred CcccccCCCCCceeEeccCCC------C--------CCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 45 KDEDIENGSLPCCRICLENDG------E--------PDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 45 ~d~~~~~~~~~~CRIC~~~e~------~--------~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
++.+.......-|-||.+.-+ + ..|-+++||. +-.|++||++|.... +..|+.|+.+
T Consensus 562 dh~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y----kl~CPvCR~p 632 (636)
T KOG0828|consen 562 DHLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY----KLICPVCRCP 632 (636)
T ss_pred ccccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh----cccCCccCCC
Confidence 344555677889999997542 0 1134566886 778999999999853 3689999876
Q ss_pred e
Q 021423 111 F 111 (312)
Q Consensus 111 Y 111 (312)
.
T Consensus 633 L 633 (636)
T KOG0828|consen 633 L 633 (636)
T ss_pred C
Confidence 4
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=85.95 E-value=0.68 Score=33.44 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=35.5
Q ss_pred ceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 56 CCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 56 ~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
.|.||.+-- .+|.+.||. +..-+.|+.+|+.. ...|++|+.++..
T Consensus 3 ~Cpi~~~~~---~~Pv~~~~G-----~v~~~~~i~~~~~~-----~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVM---KDPVILPSG-----QTYERRAIEKWLLS-----HGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcC---CCCEECCCC-----CEEeHHHHHHHHHH-----CCCCCCCcCCCCh
Confidence 688999764 368888863 67889999999976 2489999988754
No 27
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.92 E-value=0.8 Score=44.66 Aligned_cols=51 Identities=27% Similarity=0.702 Sum_probs=39.6
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
....+.|-+|++.. .+|--.||. .-.=-+|++.|..++ ..|++|+.+++-.
T Consensus 236 ~~a~~kC~LCLe~~---~~pSaTpCG-----HiFCWsCI~~w~~ek-----~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENR---SNPSATPCG-----HIFCWSCILEWCSEK-----AECPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCC---CCCCcCcCc-----chHHHHHHHHHHccc-----cCCCcccccCCCc
Confidence 44568999999764 488889986 334468999999876 4699999988754
No 28
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.99 E-value=2.3 Score=33.61 Aligned_cols=26 Identities=27% Similarity=0.490 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021423 239 ALVIVFVVIFAILGIAYGFLAATMAI 264 (312)
Q Consensus 239 ~~~~~~~~~~~i~g~~~~~~~~~~~~ 264 (312)
+++++++++..++|++-||++|-...
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~ 29 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQM 29 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777888888888888875554
No 29
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=84.83 E-value=0.43 Score=32.18 Aligned_cols=38 Identities=26% Similarity=0.863 Sum_probs=27.3
Q ss_pred eeEeccCCCCCCCC-cccccccCCCCcccchhhHHHHHHhhcCCCccccccc
Q 021423 57 CRICLENDGEPDDE-LISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTC 107 (312)
Q Consensus 57 CRIC~~~e~~~~~~-LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElC 107 (312)
|-||++.. .++ .+.||. ....++|+.+|++.+ ..|++|
T Consensus 1 C~iC~~~~---~~~~~~~~CG-----H~fC~~C~~~~~~~~-----~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL---RDPVVVTPCG-----HSFCKECIEKYLEKN-----PKCPVC 39 (39)
T ss_dssp ETTTTSB----SSEEEECTTS-----EEEEHHHHHHHHHCT-----SB-TTT
T ss_pred CCCCCCcc---cCcCEECCCC-----CchhHHHHHHHHHCc-----CCCcCC
Confidence 67898754 357 467775 678999999999862 588877
No 30
>PLN02189 cellulose synthase
Probab=78.75 E-value=1.5 Score=49.18 Aligned_cols=56 Identities=29% Similarity=0.578 Sum_probs=41.9
Q ss_pred CCCCCceeEeccCCC-CCCCCcccccc-cCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 51 NGSLPCCRICLENDG-EPDDELISPCM-CKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~-~~~~~LIsPC~-CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
+..+.+|+||-++-+ +.++++.-.|. | ---|=+.|.+.=+++ .+..|++||++|.-
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C---~fpvCr~Cyeyer~e----g~q~CpqCkt~Y~r 88 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNEC---GFPVCRPCYEYERRE----GTQNCPQCKTRYKR 88 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccC---CCccccchhhhhhhc----CCccCcccCCchhh
Confidence 344569999998754 34577778888 8 455899999665544 25799999999983
No 31
>PRK01844 hypothetical protein; Provisional
Probab=78.53 E-value=5.2 Score=31.72 Aligned_cols=25 Identities=32% Similarity=0.483 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021423 240 LVIVFVVIFAILGIAYGFLAATMAI 264 (312)
Q Consensus 240 ~~~~~~~~~~i~g~~~~~~~~~~~~ 264 (312)
+.++++++.+|+|++-||++|-.-.
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ark~~ 29 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788899999998886555
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.07 E-value=2.5 Score=42.23 Aligned_cols=55 Identities=25% Similarity=0.533 Sum_probs=38.7
Q ss_pred cCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeee
Q 021423 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVE 116 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~ 116 (312)
.+++++.|=||+.+. .+-++.||+= -..=..|-+.-+-. ...|++|+.++.--.+
T Consensus 286 ~~~~gkeCVIClse~---rdt~vLPCRH----LCLCs~Ca~~Lr~q-----~n~CPICRqpi~~ll~ 340 (349)
T KOG4265|consen 286 ESESGKECVICLSES---RDTVVLPCRH----LCLCSGCAKSLRYQ-----TNNCPICRQPIEELLE 340 (349)
T ss_pred cccCCCeeEEEecCC---cceEEecchh----hehhHhHHHHHHHh-----hcCCCccccchHhhhe
Confidence 457789999999753 4788999871 33445676665532 3589999999875543
No 33
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=78.02 E-value=3.2 Score=29.47 Aligned_cols=22 Identities=45% Similarity=0.769 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021423 238 FALVIVFVVIFAILGIAYGFLA 259 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~~~~~ 259 (312)
||++.|=|++.+|+|+.||+=-
T Consensus 7 fa~iMVPVvma~ilglIyGlGe 28 (41)
T PF10766_consen 7 FAVIMVPVVMALILGLIYGLGE 28 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788899999999999743
No 34
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.57 E-value=1.7 Score=44.29 Aligned_cols=48 Identities=29% Similarity=0.774 Sum_probs=32.3
Q ss_pred CCceeEeccCCCCCCCCcccccc-cCCCCcccchhhHHHHHHhhcCCCcccccccC
Q 021423 54 LPCCRICLENDGEPDDELISPCM-CKGTQQFVHRACLDHWRSVKEGFAFSHCTTCK 108 (312)
Q Consensus 54 ~~~CRIC~~~e~~~~~~LIsPC~-CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk 108 (312)
...|-||-+.. ..+.++ .|=. | -...|..||.+|+....+ ++.|++|+
T Consensus 4 ~A~C~Ic~d~~-p~~~~l-~~i~~c---Ghifh~~cl~qwfe~~Ps--~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGR-PNDHEL-GPIGTC---GHIFHTTCLTQWFEGDPS--NRGCPICQ 52 (465)
T ss_pred cceeeEeccCC-cccccc-ccccch---hhHHHHHHHHHHHccCCc--cCCCCcee
Confidence 35799995443 223333 2322 4 367899999999987653 37999998
No 35
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=76.76 E-value=2.4 Score=30.35 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021423 246 VIFAILGIAYGFLAATMAIQKIWQ 269 (312)
Q Consensus 246 ~~~~i~g~~~~~~~~~~~~~ri~~ 269 (312)
++|.|+|++- ..+..+.++|=||
T Consensus 12 lVF~lVglv~-i~iva~~iYRKw~ 34 (43)
T PF08114_consen 12 LVFCLVGLVG-IGIVALFIYRKWQ 34 (43)
T ss_pred eehHHHHHHH-HHHHHHHHHHHHH
Confidence 4466666653 3334455678898
No 36
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.26 E-value=7.5 Score=39.15 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHH------H---HHHH----HHHHHHHhhhhcc
Q 021423 238 FALVIVFVVIFAILGIAYG------F---LAAT----MAIQKIWQKHYHI 274 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~~------~---~~~~----~~~~ri~~r~y~~ 274 (312)
|+++++=++||.|.=|+|| | |.+- --.++.|.-||.=
T Consensus 233 lvLaIvRlILF~I~~il~~g~~g~W~FPNL~eDvGfleSF~PLy~~~~~~ 282 (372)
T KOG2927|consen 233 LVLAIVRLILFGITWILTGGKHGFWLFPNLTEDVGFLESFKPLYEYHYKK 282 (372)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEeccchhhhhhHHHhhcccccccCCC
Confidence 4566666777777777777 0 1111 1257788888864
No 37
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=76.22 E-value=2.1 Score=29.66 Aligned_cols=43 Identities=23% Similarity=0.648 Sum_probs=33.4
Q ss_pred eeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCc
Q 021423 57 CRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (312)
Q Consensus 57 CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~ 109 (312)
|-||++..++...+.+.+|. ..+.+.|+.+.. . +...|++|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~---~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--G---KSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--C---CCCCCcCCCC
Confidence 77899876445578889985 778899999888 1 3579999974
No 38
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=76.17 E-value=2.1 Score=31.38 Aligned_cols=48 Identities=23% Similarity=0.642 Sum_probs=22.3
Q ss_pred eeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 57 CRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 57 CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
|.+|.+.- +..+.-+.||.|. ++-|+.=|.....+ ....|+-||.+|.
T Consensus 1 cp~C~e~~-d~~d~~~~PC~Cg------f~IC~~C~~~i~~~-~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL-DETDKDFYPCECG------FQICRFCYHDILEN-EGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----------HHHHHHHTTS-S-SB-TTT--B--
T ss_pred CCCccccc-ccCCCccccCcCC------CcHHHHHHHHHHhc-cCCCCCCCCCCCC
Confidence 45666554 4456678999994 45576667765532 3569999999984
No 39
>PRK00523 hypothetical protein; Provisional
Probab=73.86 E-value=8.2 Score=30.61 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021423 240 LVIVFVVIFAILGIAYGFLAATMAI 264 (312)
Q Consensus 240 ~~~~~~~~~~i~g~~~~~~~~~~~~ 264 (312)
++++++++.+|+|++-||++|-.-.
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~ 30 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMF 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555668889999998876554
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.77 E-value=2.1 Score=44.24 Aligned_cols=53 Identities=28% Similarity=0.635 Sum_probs=36.4
Q ss_pred ccCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 49 IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 49 ~~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
.+.-+.|+|-+|++.- +++-.-|.|=.| ..-.|.+||++|=. ..|++|++--.
T Consensus 170 ~~~tELPTCpVCLERM-D~s~~gi~t~~c---~Hsfh~~cl~~w~~-------~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERM-DSSTTGILTILC---NHSFHCSCLMKWWD-------SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhc-Cccccceeeeec---ccccchHHHhhccc-------CcChhhhhhcC
Confidence 3456789999999754 333333444445 47789999999963 57888877654
No 41
>PTZ00358 hypothetical protein; Provisional
Probab=73.75 E-value=10 Score=38.14 Aligned_cols=33 Identities=36% Similarity=0.646 Sum_probs=23.9
Q ss_pred eehhhHHHHHHHhhhhceeeecccCCCCCcccccccccCC
Q 021423 183 YYCIGVMAFFVLLGFFGLILHCSSFNTNDPRMAGCQNCCY 222 (312)
Q Consensus 183 ~~~~gvv~F~~lvg~~Glivh~~~~~~~~~~~~~~~~c~~ 222 (312)
|.+||+. .+++|+.|+-+-||+- |..-||-||-
T Consensus 107 ypIYgia--vvlL~ILggTLyCGWK-----CnLFcRPCCk 139 (367)
T PTZ00358 107 YPIYGIA--VVLLGILGGTLYCGWK-----CNLFCRPCCK 139 (367)
T ss_pred CchHHHH--HHHHHHHHhhhhcccc-----cCcccccccc
Confidence 3446663 4578889999999985 6667777765
No 42
>PLN02436 cellulose synthase A
Probab=72.90 E-value=2.7 Score=47.49 Aligned_cols=54 Identities=28% Similarity=0.512 Sum_probs=40.8
Q ss_pred CCCCceeEeccCCC-CCCCCcccccc-cCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 52 GSLPCCRICLENDG-EPDDELISPCM-CKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 52 ~~~~~CRIC~~~e~-~~~~~LIsPC~-CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
....+|+||-++-+ +.++++.-.|+ | ---|=+.|.+.=+++ .+..|++||++|.
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C---~fpvCr~Cyeyer~e----g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNEC---AFPVCRPCYEYERRE----GNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccC---CCccccchhhhhhhc----CCccCcccCCchh
Confidence 44569999998754 34677778887 8 455889999665544 2579999999998
No 43
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.65 E-value=2.4 Score=43.03 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=37.5
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
..-.|.||++.. .++.+.||. ......|+.+|+... ..|++|+.++..
T Consensus 25 ~~l~C~IC~d~~---~~PvitpCg-----H~FCs~CI~~~l~~~-----~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFF---DVPVLTSCS-----HTFCSLCIRRCLSNQ-----PKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhh---hCccCCCCC-----CchhHHHHHHHHhCC-----CCCCCCCCcccc
Confidence 356999999754 477888875 566788999999753 489999999764
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.12 E-value=6.8 Score=43.33 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=11.3
Q ss_pred cccccccCCCCcccccCC
Q 021423 214 MAGCQNCCYGWGVLDCFP 231 (312)
Q Consensus 214 ~~~~~~c~~~~~~~~c~~ 231 (312)
+..|--|-.++.-.+|+.
T Consensus 230 LLLCDsCN~~~YH~YCLD 247 (1134)
T KOG0825|consen 230 LLLCDSCNKVYYHVYCLD 247 (1134)
T ss_pred heeecccccceeeccccC
Confidence 456777777655567743
No 45
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=67.32 E-value=4.7 Score=35.17 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhhhhccchhcccccceeeecCCCc-cCCCCCCh
Q 021423 238 FALVIVFVVIFAILGIAYGF----------------LAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGS-YTPPKLDS 300 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~~~----------------~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~-~~~~~l~~ 300 (312)
|.+.+++|++|++.|-++|+ |+|..++|+.-.|+=.-+-.|-..=--.+++-+.. -.-.+|++
T Consensus 18 f~~~~~~Ii~W~i~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQn~q~Rd~~al~~KLdeLi~~~~~a~n~li~iE~l~~ 97 (132)
T PF04120_consen 18 FVIAVAVIIVWAISGPVFGFSDTWQLVINTATTIITFLMVFLIQNTQNRDTKALQAKLDELIRAVKEARNELIDIEDLTE 97 (132)
T ss_pred HHHHHHHHHHHHHHhccccCcchHHHHHccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcccCCH
Confidence 67778889999999977776 56677788887777554322211000011111111 22334788
Q ss_pred HHHHHHhh
Q 021423 301 EHEERLKM 308 (312)
Q Consensus 301 ~~~~~l~~ 308 (312)
|+.++++.
T Consensus 98 ~el~~~~~ 105 (132)
T PF04120_consen 98 EELEEIRK 105 (132)
T ss_pred HHHHHHHH
Confidence 88887764
No 46
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=66.25 E-value=7.8 Score=39.61 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=29.7
Q ss_pred cccccCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021423 216 GCQNCCYGWGVLDCFPASMEACFALVIVFVVIFAILGIAYGFLAATMAIQKI 267 (312)
Q Consensus 216 ~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ri 267 (312)
.|+|||-..+. + .+...-.|..+.++++.+|+.+||++|+..-.-.-.++
T Consensus 62 ~~~CCcr~~~~-~-~k~~s~~c~~~sLiiltL~~~aaIi~~f~GN~~~h~gV 111 (418)
T cd07912 62 ITRCCDRKPTE-E-RPRHSICCLKWSLVIATLLCCAAIGVGLYGNDETHDGV 111 (418)
T ss_pred HHhccCCCCCC-C-CCCCCccHHHHHHHHHHHHHHHHHHHHhhccHHHhhhH
Confidence 47888765422 0 12112237887888888888888888766443333333
No 47
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=66.00 E-value=3.5 Score=46.39 Aligned_cols=56 Identities=25% Similarity=0.497 Sum_probs=35.2
Q ss_pred CCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 54 ~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
-..|-||+.--..-+..+-+ =+|..--.-.|..||-+|.++++ ...|++|+.++.+
T Consensus 1469 ~eECaICYsvL~~vdr~lPs-krC~TCknKFH~~CLyKWf~Ss~---~s~CPlCRseitf 1524 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPS-KRCATCKNKFHTRCLYKWFASSA---RSNCPLCRSEITF 1524 (1525)
T ss_pred cchhhHHHHHHHHHhccCCc-cccchhhhhhhHHHHHHHHHhcC---CCCCCcccccccc
Confidence 46899999532111122211 12211124589999999999875 4799999988764
No 48
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=65.03 E-value=5.1 Score=32.32 Aligned_cols=58 Identities=26% Similarity=0.548 Sum_probs=23.9
Q ss_pred cCCCCCceeEeccCCC-CCCCCcccccc-cCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 50 ENGSLPCCRICLENDG-EPDDELISPCM-CKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~-~~~~~LIsPC~-CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
.+.++.+|+||-++-+ +.+++++--|. | .-.|=+.|.+.=++.. ...|..||++|...
T Consensus 5 k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC---~fPvCr~CyEYErkeg----~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGLTENGEVFVACHEC---AFPVCRPCYEYERKEG----NQVCPQCKTRYKRH 64 (80)
T ss_dssp S--SS-B-SSS--B--B-SSSSB--S-SSS--------HHHHHHHHHTS-----SB-TTT--B----
T ss_pred hhcCCcccccccCccccCCCCCEEEEEccc---CCccchhHHHHHhhcC----cccccccCCCcccc
Confidence 3556789999997654 23344544443 4 3558899998777653 57999999999854
No 49
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=64.96 E-value=8.3 Score=35.07 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021423 241 VIVFVVIFAILGIAYGFLAATMAI 264 (312)
Q Consensus 241 ~~~~~~~~~i~g~~~~~~~~~~~~ 264 (312)
.|+++++++++|++.|+++.....
T Consensus 2 ~ii~~i~~~~vG~~~G~~~~~~~~ 25 (201)
T PF12072_consen 2 IIIIAIVALIVGIGIGYLVRKKIN 25 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677788888888888755443
No 50
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=64.82 E-value=12 Score=37.33 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=38.7
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccc
Q 021423 230 FPASMEACFALVIVFVVIFAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKE 283 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~ 283 (312)
+|.|--+|...++-+++.+.-+|.+.|++++.++= .|=-+|.++|+=..||+
T Consensus 168 lp~CG~~C~~~Vv~~~~~~L~~g~~~~ylv~sv~D--y~fqr~~~~K~lkMSKd 219 (349)
T COG4792 168 LPGCGLYCALPVVSFLLRLLWVGVAVGYLVFSVAD--YAFQRYQILKELKMSKD 219 (349)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccCHH
Confidence 66777788899998999999999999999988876 44434556665444553
No 51
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=64.76 E-value=21 Score=39.04 Aligned_cols=58 Identities=19% Similarity=0.414 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH-----------hhhhccchh-cccccceeeecCCC
Q 021423 234 MEACFALVIVFVVIFAILGIAYGFLAATMAIQ----------KIW-----------QKHYHILTK-KELTKEYVVEDLHG 291 (312)
Q Consensus 234 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~----------ri~-----------~r~y~~l~k-~~ltk~~~v~d~~~ 291 (312)
.-.|+.+.++++.++.++|++..|+.-..+.. +.. ++=.|++.. =..+|+.+.+|+++
T Consensus 138 ~R~~l~~~L~~~~~~il~g~i~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~ 217 (806)
T PF05478_consen 138 RRGCLGILLLLLTLIILFGVICAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDHVSSDLDN 217 (806)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35577777777777777888777665432221 111 122355555 55667777777775
No 52
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=63.98 E-value=48 Score=30.82 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021423 238 FALVIVFVVIFAILGIAYGFLAATMAIQ 265 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 265 (312)
..+.-++.-++.++|-+|.|+++..+..
T Consensus 89 ~M~~Sil~a~igi~Ga~Yc~ivS~~aL~ 116 (195)
T PF05805_consen 89 GMFLSILFAAIGILGAGYCFIVSGLALS 116 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455577888999999999999999873
No 53
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=63.71 E-value=8.8 Score=38.56 Aligned_cols=39 Identities=23% Similarity=0.712 Sum_probs=28.2
Q ss_pred cccccCCCCcccchhhHHHHHHhhcC--------CCcccccccCceeeee
Q 021423 73 SPCMCKGTQQFVHRACLDHWRSVKEG--------FAFSHCTTCKAQFHLR 114 (312)
Q Consensus 73 sPC~CkGS~kyVH~~CL~~Wl~~s~~--------~~~~~CElCk~~Y~~~ 114 (312)
.+|.|+ --==.+||-+|+++++. ..+..|+.|+++|=+.
T Consensus 307 ~~C~CR---PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 307 QQCYCR---PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred cccccc---chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 467773 11246899999998763 3578999999998664
No 54
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=62.40 E-value=12 Score=28.96 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021423 245 VVIFAILGIAYGFLAATMAI 264 (312)
Q Consensus 245 ~~~~~i~g~~~~~~~~~~~~ 264 (312)
+++.+|+|++-||++|..-.
T Consensus 3 iilali~G~~~Gff~ar~~~ 22 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYM 22 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667889999998876554
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=60.62 E-value=3.4 Score=42.40 Aligned_cols=52 Identities=33% Similarity=0.844 Sum_probs=38.9
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
...-..|.||-+.+ .+--|.||. ...-..||-.|..+.++ ..|+.|+.+..-
T Consensus 366 gsTFeLCKICaend---KdvkIEPCG-----HLlCt~CLa~WQ~sd~g---q~CPFCRcEIKG 417 (563)
T KOG1785|consen 366 GSTFELCKICAEND---KDVKIEPCG-----HLLCTSCLAAWQDSDEG---QTCPFCRCEIKG 417 (563)
T ss_pred cchHHHHHHhhccC---CCccccccc-----chHHHHHHHhhcccCCC---CCCCceeeEecc
Confidence 34457899999764 467789986 34456899999987643 589999888764
No 56
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.27 E-value=7.1 Score=40.62 Aligned_cols=47 Identities=28% Similarity=0.690 Sum_probs=35.3
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
....+.|+||+++- ..-+.||. |..||.+|...+ ..|++|+......
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~--------~~~~l~~~~~~~-----~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS--------HALCLRKWLYVQ-----EVCPLCHTYMKED 522 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc--------chhHHHhhhhhc-----cccCCCchhhhcc
Confidence 55567999999763 34456666 999999999865 4799997766554
No 57
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=58.10 E-value=12 Score=42.64 Aligned_cols=55 Identities=31% Similarity=0.649 Sum_probs=37.5
Q ss_pred CCCCCceeEeccCCC-CCCCCccccc-ccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 51 NGSLPCCRICLENDG-EPDDELISPC-MCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~-~~~~~LIsPC-~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
..++.+|+||-++-+ +.++++.--| .| ---|=+.|.+-=+++- +..|++||++|.
T Consensus 14 ~~~~qiCqICGD~vg~~~~Ge~FVAC~eC---~FPVCrpCYEYEr~eG----~q~CPqCktrYk 70 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTVDGEPFVACDVC---AFPVCRPCYEYERKDG----NQSCPQCKTKYK 70 (1079)
T ss_pred ccCCceeeecccccCcCCCCCEEEEeccC---CCccccchhhhhhhcC----CccCCccCCchh
Confidence 445669999998754 2334444334 35 3458899987665442 579999999998
No 58
>PHA03029 hypothetical protein; Provisional
Probab=57.66 E-value=17 Score=29.42 Aligned_cols=23 Identities=43% Similarity=0.914 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021423 239 ALVIVFVVIFAILGIAYGFLAAT 261 (312)
Q Consensus 239 ~~~~~~~~~~~i~g~~~~~~~~~ 261 (312)
++++-++++.+++||..|+|+.+
T Consensus 12 ~~iiyiilila~igiiwg~llsi 34 (92)
T PHA03029 12 AIIIYIILILAIIGIIWGFLLSI 34 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667789999999999875
No 59
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=57.30 E-value=12 Score=30.54 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=24.9
Q ss_pred cccchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 82 QFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 82 kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
.-.|--|..+|++.+ ..|+++..+|++..
T Consensus 56 HaFH~HCI~rWL~Tk-----~~CPld~q~w~~~~ 84 (88)
T COG5194 56 HAFHDHCIYRWLDTK-----GVCPLDRQTWVLAD 84 (88)
T ss_pred hHHHHHHHHHHHhhC-----CCCCCCCceeEEec
Confidence 557999999999986 48999999998863
No 60
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=56.02 E-value=10 Score=24.64 Aligned_cols=18 Identities=39% Similarity=0.966 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021423 238 FALVIVFVVIFAILGIAY 255 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~ 255 (312)
|++++|+.++..|+|..|
T Consensus 8 f~livVLFILLIIiga~~ 25 (26)
T TIGR01732 8 FALIVVLFILLVIVGAAF 25 (26)
T ss_pred hHHHHHHHHHHHHhheee
Confidence 788877777778887654
No 61
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=54.11 E-value=3.8 Score=35.92 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=28.0
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCC-CcccchhhHHHHHHh
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGT-QQFVHRACLDHWRSV 95 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS-~kyVH~~CL~~Wl~~ 95 (312)
..-.|+||++.-.+.++-..-+|.-.-. -+..|.+|+++|...
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 3568999998765423444455543221 145899999999644
No 62
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=52.95 E-value=29 Score=31.46 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhhccc
Q 021423 260 ATMAIQKIWQKHYHIL 275 (312)
Q Consensus 260 ~~~~~~ri~~r~y~~l 275 (312)
...++.+.|+|||||-
T Consensus 189 i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 189 IAFALRFYLKKKYNIT 204 (206)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4566788899999983
No 63
>PLN02195 cellulose synthase A
Probab=51.73 E-value=13 Score=41.79 Aligned_cols=53 Identities=21% Similarity=0.491 Sum_probs=36.4
Q ss_pred CCCceeEeccCCC-CC-CCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 53 SLPCCRICLENDG-EP-DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 53 ~~~~CRIC~~~e~-~~-~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
...+|+||-++-+ +. +++.+.-=.| .--|=+.|.+-=+++ .+..|++||++|.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC---~~pvCrpCyeyer~e----g~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHEC---SYPLCKACLEYEIKE----GRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccC---CCccccchhhhhhhc----CCccCCccCCccc
Confidence 4569999997554 22 3444433335 355889998766544 2579999999999
No 64
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=51.49 E-value=12 Score=31.96 Aligned_cols=30 Identities=13% Similarity=0.480 Sum_probs=25.1
Q ss_pred CcccchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 81 QQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 81 ~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
..-.|.-|+.+|++++ ..|+||..++.+..
T Consensus 82 NHaFH~hCisrWlktr-----~vCPLdn~eW~~qr 111 (114)
T KOG2930|consen 82 NHAFHFHCISRWLKTR-----NVCPLDNKEWVFQR 111 (114)
T ss_pred chHHHHHHHHHHHhhc-----CcCCCcCcceeEee
Confidence 3568999999999876 49999999988763
No 65
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=50.82 E-value=14 Score=29.23 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 021423 251 LGIAYGFLAATMAI 264 (312)
Q Consensus 251 ~g~~~~~~~~~~~~ 264 (312)
+||+||+++..++.
T Consensus 47 iGIlYG~viGlli~ 60 (70)
T TIGR01149 47 IGILYGLVIGLILF 60 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999888764
No 66
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=50.20 E-value=14 Score=29.70 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHH
Q 021423 251 LGIAYGFLAATMAI 264 (312)
Q Consensus 251 ~g~~~~~~~~~~~~ 264 (312)
+||+||+.+++++.
T Consensus 50 iGIlYG~viGlli~ 63 (77)
T PRK01026 50 IGILYGLVIGLLIV 63 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999998888765
No 67
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=48.77 E-value=19 Score=39.89 Aligned_cols=32 Identities=38% Similarity=0.654 Sum_probs=24.3
Q ss_pred hccccchhhhhccCCCcceeehhhHHHH-HHHhhhhcee
Q 021423 164 RNSFSDGWDRILSKHPIPFYYCIGVMAF-FVLLGFFGLI 201 (312)
Q Consensus 164 ~n~~S~~w~riL~~~~~~F~~~~gvv~F-~~lvg~~Gli 201 (312)
-.+.+..|.+.+ |++..|.|.| +-++|++++-
T Consensus 656 ~es~G~~w~~al------~qiivGl~l~qv~l~glf~~~ 688 (827)
T COG5594 656 PESGGGYWPRAL------FQIIVGLYLFQVCLLGLFSLA 688 (827)
T ss_pred cccCCCccHHHH------HHHHHHHHHHHHHHHHHHHhc
Confidence 456677888866 9999999988 6677666655
No 68
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.74 E-value=42 Score=24.71 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchh
Q 021423 244 FVVIFAILGIAYGFLAATMAIQKIWQKHYHILTK 277 (312)
Q Consensus 244 ~~~~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k 277 (312)
++++.+++|++.|.+++.... .-++|...=++|
T Consensus 23 ~il~~f~~G~llg~l~~~~~~-~~~r~~~~~~~k 55 (68)
T PF06305_consen 23 LILIAFLLGALLGWLLSLPSR-LRLRRRIRRLRK 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344555678888886665544 233455544444
No 69
>PF13994 PgaD: PgaD-like protein
Probab=48.73 E-value=38 Score=29.03 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHhhhhccchhcccccceeeecCCCccCCCCCChHHHHHHhhhc
Q 021423 265 QKIWQKHYHILTKKELTKEYVVEDLHGSYTPPKLDSEHEERLKMLK 310 (312)
Q Consensus 265 ~ri~~r~y~~l~k~~ltk~~~v~d~~~~~~~~~l~~~~~~~l~~l~ 310 (312)
-++.+++|+...||-....+-.+|+-.++. +++|+.++++.=+
T Consensus 82 a~yn~~Rf~~~~rr~~~~~~~~~elA~~f~---l~~~~l~~lr~~k 124 (138)
T PF13994_consen 82 AKYNRLRFRGRRRRRRPPPVSDEELARSFG---LSPEQLQQLRQAK 124 (138)
T ss_pred HHHHHHHhcchhhccCCCCCCHHHHHHHcC---CCHHHHHHHHhCC
Confidence 347789999999998888877888877775 6699999987533
No 70
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=48.43 E-value=20 Score=39.18 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021423 234 MEACFALVIVFVVIFAILGIAYGFLAATMAIQKIWQ 269 (312)
Q Consensus 234 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ri~~ 269 (312)
-..|-=....+.++.++++|+.|++.|.+.-|++-.
T Consensus 134 ~~~c~R~~l~~~L~~~~~~il~g~i~aF~~n~~l~~ 169 (806)
T PF05478_consen 134 NDACRRGCLGILLLLLTLIILFGVICAFVANQQLST 169 (806)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357876677677788999999999999988877643
No 71
>PRK11380 hypothetical protein; Provisional
Probab=46.59 E-value=43 Score=33.75 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCccCCCCCChHHHHHH
Q 021423 253 IAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGSYTPPKLDSEHEERL 306 (312)
Q Consensus 253 ~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~~~~~~l~~~~~~~l 306 (312)
.+|++++..++++||++| .|||+-.+|.-.- -++|+.|+-+-|
T Consensus 79 ~~~~~~~l~~~~~~~~~~-----~~~eq~~yy~~~~------~~~LteEq~r~L 121 (353)
T PRK11380 79 FLYLLIMLGLIVRAGFKK-----AKKEQLRYYQAKG------IEPLSEEKRQAL 121 (353)
T ss_pred HHHHHHHHHHHHHHHHcc-----chHHHHHHHHHcC------CCCCCHHHHHHH
Confidence 578889999999999963 4667766665443 366877776554
No 72
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.00 E-value=17 Score=37.53 Aligned_cols=55 Identities=22% Similarity=0.590 Sum_probs=39.1
Q ss_pred CCCceeEeccCCCCCCC-CcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 53 SLPCCRICLENDGEPDD-ELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~-~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
.+.+|-||+++-..++| .+++| .| -...-.+|.++|+-.+ -...|++|+.+-..+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl-~c---ghlFgs~cie~wl~k~---~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSL-QC---GHLFGSQCIEKWLGKK---TKMQCPLCSGKATKR 58 (463)
T ss_pred ccccCceeeeeeeecCceEEeee-cc---cccccHHHHHHHHhhh---hhhhCcccCChhHHH
Confidence 46789999987765544 34455 45 3556789999999532 368999999875544
No 73
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.83 E-value=53 Score=26.07 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021423 243 VFVVIFAILGIAYGFLAATMAIQKIWQKH 271 (312)
Q Consensus 243 ~~~~~~~i~g~~~~~~~~~~~~~ri~~r~ 271 (312)
.+-+++.++.++.|++....+.+|+.++.
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~~k~ 32 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQMKKQ 32 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888888888888877653
No 74
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=44.60 E-value=51 Score=31.17 Aligned_cols=14 Identities=50% Similarity=0.807 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 021423 238 FALVIVFVVIFAIL 251 (312)
Q Consensus 238 ~~~~~~~~~~~~i~ 251 (312)
|++++|=+++|+|+
T Consensus 154 ~~laivRlilf~i~ 167 (224)
T PF03839_consen 154 FALAIVRLILFLIT 167 (224)
T ss_pred HHHHHHHHHHHHHH
Confidence 45544444444443
No 75
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=44.23 E-value=20 Score=28.34 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 021423 251 LGIAYGFLAATMAI 264 (312)
Q Consensus 251 ~g~~~~~~~~~~~~ 264 (312)
+||+||+.+..++.
T Consensus 47 iGIlYG~v~Glii~ 60 (70)
T PF04210_consen 47 IGILYGLVIGLIIF 60 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999998887754
No 76
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=44.11 E-value=94 Score=27.94 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCccCCCCCChHHHHHHhh
Q 021423 248 FAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGSYTPPKLDSEHEERLKM 308 (312)
Q Consensus 248 ~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~~~~~~l~~~~~~~l~~ 308 (312)
++.+-++-++++-. -.++.||+||. .||---+.+-.+++.+++. +++|.+++|+.
T Consensus 66 yl~ial~nAvlLI~--WA~YN~~RF~~-eRR~~~~~l~~dElA~sF~---l~~e~i~qLr~ 120 (153)
T PRK14584 66 YLAIAAFNAVLLII--WAKYNQVRFQV-ERRGHRPDLDDDELASSFA---LSPELIAQLKS 120 (153)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHhcc-cccCCCCCCChHHHHHHcC---CCHHHHHHHHh
Confidence 33333444444333 34588999996 6655555555556656554 67777777765
No 77
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.60 E-value=16 Score=28.68 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccchhccccc
Q 021423 247 IFAILGIAYGFLAATMAIQKIWQKHYHILTKKELTK 282 (312)
Q Consensus 247 ~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk 282 (312)
+..|.|++--||++-.+.+-.||+..-.-+|+..+|
T Consensus 17 LlvV~g~ll~flvGnyvlY~Yaqk~lpp~kkkpvsk 52 (69)
T PF04689_consen 17 LLVVAGLLLVFLVGNYVLYVYAQKTLPPKKKKPVSK 52 (69)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccH
Confidence 346678888899999999999999888877777665
No 78
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.38 E-value=24 Score=29.53 Aligned_cols=17 Identities=41% Similarity=0.753 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021423 243 VFVVIFAILGIAYGFLA 259 (312)
Q Consensus 243 ~~~~~~~i~g~~~~~~~ 259 (312)
+++.+++|||.+|||..
T Consensus 30 ~ilti~aiVg~i~Gf~~ 46 (101)
T KOG4112|consen 30 LILTIGAIVGFIYGFAQ 46 (101)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567899999999864
No 79
>PLN02400 cellulose synthase
Probab=42.56 E-value=19 Score=41.10 Aligned_cols=55 Identities=24% Similarity=0.534 Sum_probs=36.8
Q ss_pred CCCCceeEeccCCC-CCCCCccccc-ccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 52 GSLPCCRICLENDG-EPDDELISPC-MCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 52 ~~~~~CRIC~~~e~-~~~~~LIsPC-~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
..+.+|+||-++-+ +.++++.--| .| ---|=+.|.+.=+++ .+..|++||++|.-
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eC---aFPVCRpCYEYERke----Gnq~CPQCkTrYkR 90 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNEC---AFPVCRPCYEYERKD----GTQCCPQCKTRYRR 90 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccC---CCccccchhheeccc----CCccCcccCCcccc
Confidence 45569999998754 2344444444 35 344888998655443 35799999999983
No 80
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=42.20 E-value=37 Score=32.19 Aligned_cols=52 Identities=21% Similarity=0.367 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hhccchhcccccceeeecCCCccCCCC
Q 021423 246 VIFAILGIAYGFLAATMAIQKIWQK-HYHILTKKELTKEYVVEDLHGSYTPPK 297 (312)
Q Consensus 246 ~~~~i~g~~~~~~~~~~~~~ri~~r-~y~~l~k~~ltk~~~v~d~~~~~~~~~ 297 (312)
..|+|+||..|+|+|+++..|-=|| -|.=+.-+-=.-.-+.+.+.+.|+.++
T Consensus 53 ~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~~W~~~~ 105 (224)
T PF13829_consen 53 WYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRRGWRVTE 105 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcCCcccCC
Confidence 6789999999999999998777664 344333333333445556666676665
No 81
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=41.88 E-value=15 Score=23.41 Aligned_cols=18 Identities=33% Similarity=0.794 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 021423 237 CFALVIVFVVIFAILGIA 254 (312)
Q Consensus 237 ~~~~~~~~~~~~~i~g~~ 254 (312)
.|+++||+.++..|+|-.
T Consensus 5 ~FalivVLFILLiIvG~s 22 (24)
T PF09680_consen 5 GFALIVVLFILLIIVGAS 22 (24)
T ss_pred cchhHHHHHHHHHHhcce
Confidence 378888888888888754
No 82
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.32 E-value=14 Score=33.53 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=9.9
Q ss_pred HHHHHHHhhhhc
Q 021423 262 MAIQKIWQKHYH 273 (312)
Q Consensus 262 ~~~~ri~~r~y~ 273 (312)
-+|||||||.|-
T Consensus 81 giGQkiWq~Df~ 92 (197)
T KOG4414|consen 81 GIGQKIWQHDFA 92 (197)
T ss_pred hhhHHHHhcccc
Confidence 369999999874
No 83
>PF10821 DUF2567: Protein of unknown function (DUF2567); InterPro: IPR021213 This is a bacterial family of proteins with unknown function.
Probab=41.20 E-value=37 Score=30.88 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021423 247 IFAILGIAYGFLAATMAI 264 (312)
Q Consensus 247 ~~~i~g~~~~~~~~~~~~ 264 (312)
+|+.+|+++|+++|..+-
T Consensus 50 ~f~~l~lv~Gvvaav~~W 67 (167)
T PF10821_consen 50 LFVLLGLVLGVVAAVAVW 67 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555554443
No 84
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=40.39 E-value=35 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021423 239 ALVIVFVVIFAILGIAYGFLAA 260 (312)
Q Consensus 239 ~~~~~~~~~~~i~g~~~~~~~~ 260 (312)
.+++++-++..+.|++++.+.|
T Consensus 14 ~v~v~lM~i~tvg~v~~~al~a 35 (35)
T PF13253_consen 14 MVVVWLMLILTVGSVVASALSA 35 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4556667777888888887753
No 85
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=39.74 E-value=28 Score=33.46 Aligned_cols=18 Identities=22% Similarity=0.667 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021423 238 FALVIVFVVIFAILGIAY 255 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~ 255 (312)
.+++||.+++|+++|++|
T Consensus 195 IaliVitl~vf~LvgLyr 212 (259)
T PF07010_consen 195 IALIVITLSVFTLVGLYR 212 (259)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667777777777755
No 86
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=37.16 E-value=22 Score=35.41 Aligned_cols=57 Identities=19% Similarity=0.413 Sum_probs=38.2
Q ss_pred CCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhc------------------CCCcccccccCceeeeee
Q 021423 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKE------------------GFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 54 ~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~------------------~~~~~~CElCk~~Y~~~~ 115 (312)
.-+|-||+=+..+.+.-...+|. .|.|-.||.+.+..-. ..-...|++|..+...+.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 45677777555333334457775 8999999988876421 012356999999988775
No 87
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=36.83 E-value=1.1e+02 Score=27.71 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=15.3
Q ss_pred cceeehhhHHHHHHHhhhhcee
Q 021423 180 IPFYYCIGVMAFFVLLGFFGLI 201 (312)
Q Consensus 180 ~~F~~~~gvv~F~~lvg~~Gli 201 (312)
.++++.+++=+.+.++|+.|++
T Consensus 51 ~~~~ili~~G~v~~~v~flGc~ 72 (237)
T KOG3882|consen 51 VPAYILIAVGGVVFLVGFLGCC 72 (237)
T ss_pred cchhhhhhhhHHHHHHHHhhhh
Confidence 4566666666667788887775
No 88
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=36.81 E-value=19 Score=25.40 Aligned_cols=42 Identities=24% Similarity=0.572 Sum_probs=20.3
Q ss_pred eeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccc
Q 021423 57 CRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHC 104 (312)
Q Consensus 57 CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~C 104 (312)
|-||++-.+++..|.+.||. .-+=++||+++.+.+.+ +..+|
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~-~~~kC 42 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDR-NRFKC 42 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S--S-B--
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCC-CeeeC
Confidence 56777732233457889964 56778999999986531 34455
No 89
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=36.65 E-value=1.1e+02 Score=29.24 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021423 238 FALVIVFVVIFAILGIA 254 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~ 254 (312)
|+++++=+++|+|+=++
T Consensus 162 ~~laivRlilF~i~~~~ 178 (232)
T TIGR00869 162 FAVAILRLILFVLTLIV 178 (232)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555444
No 90
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=35.48 E-value=17 Score=25.25 Aligned_cols=42 Identities=31% Similarity=0.661 Sum_probs=25.3
Q ss_pred eeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCccccccc
Q 021423 57 CRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTC 107 (312)
Q Consensus 57 CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElC 107 (312)
|-||++-- .+|..-+|. .-.=+.||.+|.....+ ....|++|
T Consensus 1 CpiC~~~~---~~Pv~l~CG-----H~FC~~Cl~~~~~~~~~-~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF---KDPVSLPCG-----HSFCRSCLERLWKEPSG-SGFSCPEC 42 (42)
T ss_dssp ETTTTSB----SSEEE-SSS-----SEEEHHHHHHHHCCSSS-ST---SSS
T ss_pred CCccchhh---CCccccCCc-----CHHHHHHHHHHHHccCC-cCCCCcCC
Confidence 56788653 478888875 34557899999876532 22688887
No 91
>PF14802 TMEM192: TMEM192 family
Probab=34.65 E-value=82 Score=29.88 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhhccchhccc
Q 021423 257 FLAATMAIQKIWQKHYHILTKKEL 280 (312)
Q Consensus 257 ~~~~~~~~~ri~~r~y~~l~k~~l 280 (312)
+.+.|++++|+||+|-+.++.+--
T Consensus 68 lW~lt~l~d~y~k~~H~klr~~GY 91 (236)
T PF14802_consen 68 LWLLTYLFDRYIKHQHQKLRLQGY 91 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCH
Confidence 567899999999999888776544
No 92
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=34.46 E-value=36 Score=38.80 Aligned_cols=56 Identities=20% Similarity=0.510 Sum_probs=37.7
Q ss_pred CCCCCceeEeccCCC-CC-CCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 51 NGSLPCCRICLENDG-EP-DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~-~~-~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
+-+..+|.||-++-+ +. +++.+.-=.| .--|=+.|.+.=+++ ....|++||++|.-
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC---~fpvCr~cyeye~~~----g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVC---GFPVCKPCYEYERSE----GNQCCPQCNTRYKR 69 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccC---CCccccchhhhhhhc----CCccCCccCCchhh
Confidence 446789999998654 23 3444433235 345888998655543 25799999999983
No 93
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=34.35 E-value=12 Score=28.85 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=12.2
Q ss_pred cccccccCceeeeee
Q 021423 101 FSHCTTCKAQFHLRV 115 (312)
Q Consensus 101 ~~~CElCk~~Y~~~~ 115 (312)
-++|.+|+++.....
T Consensus 8 H~HC~VCg~aIp~de 22 (64)
T COG4068 8 HRHCVVCGKAIPPDE 22 (64)
T ss_pred CccccccCCcCCCcc
Confidence 469999999988764
No 94
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=33.67 E-value=40 Score=34.42 Aligned_cols=18 Identities=33% Similarity=0.761 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021423 245 VVIFAILGIAYGFLAATM 262 (312)
Q Consensus 245 ~~~~~i~g~~~~~~~~~~ 262 (312)
+++++++|.+.||++||.
T Consensus 310 i~~lL~ig~~~gFv~Att 327 (387)
T PF12751_consen 310 ILLLLVIGFAIGFVFATT 327 (387)
T ss_pred HHHHHHHHHHHHhhhhcC
Confidence 344777899999999974
No 95
>PRK00523 hypothetical protein; Provisional
Probab=33.51 E-value=1e+02 Score=24.50 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021423 241 VIVFVVIFAILGIAYGFLAATMAIQKIWQKH 271 (312)
Q Consensus 241 ~~~~~~~~~i~g~~~~~~~~~~~~~ri~~r~ 271 (312)
.+.+.++..|++++-|+++...+..|..++.
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888899988888887776543
No 96
>PRK01844 hypothetical protein; Provisional
Probab=33.25 E-value=1.1e+02 Score=24.46 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021423 242 IVFVVIFAILGIAYGFLAATMAIQKIWQKH 271 (312)
Q Consensus 242 ~~~~~~~~i~g~~~~~~~~~~~~~ri~~r~ 271 (312)
+.+.++..|++++-|+++...+..|..++.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~ 32 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999988888887776543
No 97
>PRK11677 hypothetical protein; Provisional
Probab=33.05 E-value=38 Score=29.61 Aligned_cols=20 Identities=25% Similarity=0.472 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021423 244 FVVIFAILGIAYGFLAATMA 263 (312)
Q Consensus 244 ~~~~~~i~g~~~~~~~~~~~ 263 (312)
+.++-+|||++-|++++-..
T Consensus 5 ~a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34455677888888777653
No 98
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.45 E-value=46 Score=33.01 Aligned_cols=53 Identities=13% Similarity=0.320 Sum_probs=34.4
Q ss_pred CCCceeEeccCCCCC-C-CCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 53 SLPCCRICLENDGEP-D-DELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~-~-~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
+...|-||..+.-.. + .-+++||. .-.=++|+.+.+... ...|+.|+.++..+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~~----~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVRG----SGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcCC----CCCCCCCCCccchh
Confidence 456899999754221 1 22677664 334568999965432 35899999887654
No 99
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=31.61 E-value=42 Score=32.49 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeee-cCCCc
Q 021423 242 IVFVVIFAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVE-DLHGS 292 (312)
Q Consensus 242 ~~~~~~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~-d~~~~ 292 (312)
.|+++.|+=-++.-.+++.+.+.---+-|..-.-..+||.||||+. -+||-
T Consensus 147 Aiivvaf~gpsl~namfA~~LAllPrfirsiY~avh~EleKeYViaarLdGa 198 (296)
T COG4171 147 AIIVVAFAGPSLSNAMFAVWLALLPRFIRSIYSAVHDELEKEYVIAARLDGA 198 (296)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 3555666666777777877777765566665566678999999986 45563
No 100
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=31.52 E-value=33 Score=27.77 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q 021423 247 IFAILGIAYGFL 258 (312)
Q Consensus 247 ~~~i~g~~~~~~ 258 (312)
-++.+||+||+.
T Consensus 16 SaL~~Gv~YG~~ 27 (86)
T PF05680_consen 16 SALGLGVVYGAY 27 (86)
T ss_pred HHHHHHHHHHHH
Confidence 357899999986
No 101
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=30.86 E-value=59 Score=29.48 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021423 241 VIVFVVIFAILGIAYGFLAAT 261 (312)
Q Consensus 241 ~~~~~~~~~i~g~~~~~~~~~ 261 (312)
+++.+++++++|++.|++++.
T Consensus 4 ~~~~~~~~~~lg~~~g~~l~~ 24 (191)
T PRK05113 4 IWIAVAALSLLALVFGAILGF 24 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999998874
No 102
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=30.19 E-value=64 Score=29.28 Aligned_cols=41 Identities=27% Similarity=0.677 Sum_probs=26.0
Q ss_pred CCceeEeccCCCC-------CCCCcccccccCCCCcccchhhHHHHHHhh
Q 021423 54 LPCCRICLENDGE-------PDDELISPCMCKGTQQFVHRACLDHWRSVK 96 (312)
Q Consensus 54 ~~~CRIC~~~e~~-------~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s 96 (312)
...|-||++-+-. ..+.--.|=.|. .-|-|..||++.....
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~--Ts~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCD--TSYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccC--CccchhHHHHHHHHHh
Confidence 4589999976421 112222343475 5567999999998753
No 103
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=30.10 E-value=1.2e+02 Score=24.40 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021423 244 FVVIFAILGIAYGFLAATMAIQKIWQKHYH 273 (312)
Q Consensus 244 ~~~~~~i~g~~~~~~~~~~~~~ri~~r~y~ 273 (312)
+|++++++-++|||+..-.+=.||=.|+=|
T Consensus 7 ~vli~~~~~~~~~~~~lh~lP~~iA~kr~H 36 (78)
T PF11742_consen 7 VVLIFVVIVLIYGFWKLHDLPGKIAHKRNH 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcCC
Confidence 344556666888887776666666554433
No 104
>PRK09823 putative inner membrane protein; Provisional
Probab=30.05 E-value=1e+02 Score=27.73 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhh
Q 021423 239 ALVIVFVVIFAILGIAYGFLAAT-----------MAIQKIWQKH 271 (312)
Q Consensus 239 ~~~~~~~~~~~i~g~~~~~~~~~-----------~~~~ri~~r~ 271 (312)
-+++-+.=+|.+++.+||.+-|- .+.|.+|+|-
T Consensus 43 l~i~~i~plf~~l~w~~g~~pAlLTGVa~AclP~kiyq~~~~R~ 86 (160)
T PRK09823 43 LVIIQVLPLFLLLSWTTGAIPALLTGVAVACLPEKIYQQKIYRC 86 (160)
T ss_pred hHHHHhhHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 33444556789999999988774 4679999984
No 105
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=30.02 E-value=52 Score=28.94 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021423 241 VIVFVVIFAILGIAYGFLAAT 261 (312)
Q Consensus 241 ~~~~~~~~~i~g~~~~~~~~~ 261 (312)
+++.+++++++|++.|+++|.
T Consensus 2 ~~~~~~~~~~~g~~~~~~l~~ 22 (165)
T TIGR01944 2 IIAAVAALSALGLALGAILGY 22 (165)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345677788899999998874
No 106
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=29.69 E-value=69 Score=29.10 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021423 245 VVIFAILGIAYGFLAATMAIQKIWQKHY 272 (312)
Q Consensus 245 ~~~~~i~g~~~~~~~~~~~~~ri~~r~y 272 (312)
+++.+|+|++-|++++..+..++.++..
T Consensus 2 ~ii~~i~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 2 IIIIAIVALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999998877777654
No 107
>PRK12705 hypothetical protein; Provisional
Probab=29.49 E-value=68 Score=33.76 Aligned_cols=29 Identities=24% Similarity=0.642 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021423 238 FALVIVFVVIFAILGIAYGFLAATMAIQK 266 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~r 266 (312)
|++.++++++|.++||+.|+++..+.-++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (508)
T PRK12705 1 FAMSILLVILLLLIGLLLGVLVVLLKKRQ 29 (508)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999887766544
No 108
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=29.20 E-value=54 Score=31.75 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHhhhhccchhcccccceeeecCCCc
Q 021423 247 IFAILGIAYGFLAATMAI----QKIWQKHYHILTKKELTKEYVVEDLHGS 292 (312)
Q Consensus 247 ~~~i~g~~~~~~~~~~~~----~ri~~r~y~~l~k~~ltk~~~v~d~~~~ 292 (312)
..|++|-+||+++|-++. -|+=+|.-.-...+++.+|=++.=.+|+
T Consensus 203 A~Alv~TlyGv~lAn~i~~PiA~kl~~~~~~e~~~~~~i~egi~ai~~G~ 252 (282)
T TIGR03818 203 AAALVGTFLGILLAYGFVGPLAAALEQRVEEEIKFLECVKVTLVASLNGY 252 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 358889999999988844 4555555555556666666666666664
No 109
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=29.18 E-value=85 Score=28.26 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 021423 252 GIAYGFLAATMAIQKIWQKHYH 273 (312)
Q Consensus 252 g~~~~~~~~~~~~~ri~~r~y~ 273 (312)
..+-+-++...+|+|+.++|+.
T Consensus 164 ~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 164 ITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3344445667789999999984
No 110
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=28.89 E-value=1.2e+02 Score=30.24 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021423 244 FVVIFAILGIAYGFLAATMAIQKIWQKHY 272 (312)
Q Consensus 244 ~~~~~~i~g~~~~~~~~~~~~~ri~~r~y 272 (312)
+-+.+|-+|++.|.++...++++.=+||+
T Consensus 159 vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 159 VGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567899999999999999988888888
No 111
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=28.42 E-value=67 Score=27.97 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=9.9
Q ss_pred HHhhhhc-cchhccccccee
Q 021423 267 IWQKHYH-ILTKKELTKEYV 285 (312)
Q Consensus 267 i~~r~y~-~l~k~~ltk~~~ 285 (312)
+|+|+|- --.-+-+|+|++
T Consensus 93 ~~~r~~~~~~~P~T~t~Ewq 112 (136)
T cd00922 93 GLQRAFVYGPKPHTFTEEWQ 112 (136)
T ss_pred HHHHHhccCCCCCCcCHHHH
Confidence 6777765 333334455543
No 112
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=27.92 E-value=86 Score=25.78 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 021423 250 ILGIAYGFLAATMAIQKIWQKH 271 (312)
Q Consensus 250 i~g~~~~~~~~~~~~~ri~~r~ 271 (312)
++=++.|+|+|++- +-|.|
T Consensus 46 vVvvivg~LLMGLh---msqkH 64 (93)
T PF08999_consen 46 VVVVIVGALLMGLH---MSQKH 64 (93)
T ss_dssp HHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHhh---hhhhh
Confidence 33344566666542 45555
No 113
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=27.79 E-value=29 Score=25.09 Aligned_cols=39 Identities=13% Similarity=0.343 Sum_probs=17.9
Q ss_pred CCcccccccCCCCcccchhhH--HHHHHhhcCCCcccccccCce
Q 021423 69 DELISPCMCKGTQQFVHRACL--DHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 69 ~~LIsPC~CkGS~kyVH~~CL--~~Wl~~s~~~~~~~CElCk~~ 110 (312)
..+..|.+= ....|.+|. +.|+........+.|++|+.+
T Consensus 10 ~~i~~P~Rg---~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 10 QRIRIPVRG---KNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-SSEEEE---TT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred CEEEeCccC---CcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 344556553 466788885 678876654567899999864
No 114
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=27.19 E-value=97 Score=28.02 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 021423 252 GIAYGFLAATMAIQKIWQKHYH 273 (312)
Q Consensus 252 g~~~~~~~~~~~~~ri~~r~y~ 273 (312)
..+-+=++...+|+|+-+||+.
T Consensus 167 ~t~v~~~iG~~iG~kllkKHF~ 188 (189)
T TIGR02185 167 LTAVAGIAGVLIGKKLLKKHFE 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3344446677889999999983
No 115
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=27.09 E-value=88 Score=30.35 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=11.7
Q ss_pred cccccccCceeeeee
Q 021423 101 FSHCTTCKAQFHLRV 115 (312)
Q Consensus 101 ~~~CElCk~~Y~~~~ 115 (312)
...|--|+.+|-+..
T Consensus 157 rv~CghC~~~Fl~~~ 171 (256)
T PF09788_consen 157 RVICGHCSNTFLFNT 171 (256)
T ss_pred eEECCCCCCcEeccC
Confidence 467888888888774
No 116
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=26.88 E-value=1.1e+02 Score=30.62 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCccCCCCCChHHHHHHhhh
Q 021423 248 FAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGSYTPPKLDSEHEERLKML 309 (312)
Q Consensus 248 ~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~~~~~~l~~~~~~~l~~l 309 (312)
+.+++.+-.+++..-++.-.|||+-|.= |-..|| ++++.|+.-..=|||.-+|.|.+
T Consensus 184 ~~l~~~~~~~~~via~~D~~~qr~~~~k-~lkMsk----qEvKdE~Ke~EGdP~iK~rrR~~ 240 (349)
T PRK12721 184 FWLWGGLLACYLVFGILDYSFQRYKIMK-QLKMSK----DDVKQEYKDSEGDPEIKQKRREL 240 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCH----HHHHHHHHhccCCHHHHHHHHHH
Confidence 3333344444444456777899877763 444466 34555566666688888877765
No 117
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=26.78 E-value=91 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021423 244 FVVIFAILGIAYGFLAATMAIQ 265 (312)
Q Consensus 244 ~~~~~~i~g~~~~~~~~~~~~~ 265 (312)
+.++|.++||+-|+..|-..+.
T Consensus 76 ~tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 76 WTLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455778888888887755543
No 118
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.30 E-value=59 Score=27.73 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021423 246 VIFAILGIAYGFLAATMA 263 (312)
Q Consensus 246 ~~~~i~g~~~~~~~~~~~ 263 (312)
++.+|||++-|++++-..
T Consensus 3 ~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345666777777665443
No 119
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=26.03 E-value=2.1e+02 Score=26.19 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhhccchhcccccceeeecCCCc-----------------cCCCCCChHHHHHHhh
Q 021423 261 TMAIQKIWQKHYHILTKKELTKEYVVEDLHGS-----------------YTPPKLDSEHEERLKM 308 (312)
Q Consensus 261 ~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~-----------------~~~~~l~~~~~~~l~~ 308 (312)
+.-.++.++.|=-++.--.+++.|.|.+-..+ .+|--.|..|.+-|++
T Consensus 35 ~~~~~~~~~~q~~vlvPp~~~~~~~vs~~~ad~~YLe~ma~~~~~L~lNvTP~nVd~~~~~LL~~ 99 (188)
T PRK13726 35 GVNNYRLQNEQRTAVTPMAFNAPFAVSQNSADASYLQQMALSFIALRLNVSPETVDASHQALLQY 99 (188)
T ss_pred HHHHHHhccCcEEEEECCcCCccEEEECCcCCHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh
Confidence 33445566666667777788999999886543 5666666665555543
No 120
>PRK07118 ferredoxin; Validated
Probab=25.83 E-value=70 Score=30.80 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021423 241 VIVFVVIFAILGIAYGFLAATMAIQKIWQKHYHI 274 (312)
Q Consensus 241 ~~~~~~~~~i~g~~~~~~~~~~~~~ri~~r~y~~ 274 (312)
+++-+++++++|+++|++++.- .+.|+|
T Consensus 4 i~~~~~~~~~~g~~~g~~l~~a------~~~f~v 31 (280)
T PRK07118 4 ILFAVLSLGALGLVFGILLAFA------SKKFAV 31 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------eeeeec
Confidence 4566778889999999888743 455665
No 121
>PF04532 DUF587: Protein of unknown function (DUF587); InterPro: IPR007618 This domain is found at the N-termini of some human herpesvirus U58 proteins, and some cytomegalovirus UL87 proteins. This region is always found N-terminal to the UL87 (IPR004285 from INTERPRO), which has no known function.
Probab=25.64 E-value=22 Score=33.40 Aligned_cols=28 Identities=25% Similarity=0.640 Sum_probs=20.1
Q ss_pred eccCCCCCCCCc-ccccccCCCCcccchh
Q 021423 60 CLENDGEPDDEL-ISPCMCKGTQQFVHRA 87 (312)
Q Consensus 60 C~~~e~~~~~~L-IsPC~CkGS~kyVH~~ 87 (312)
|+.++.+.++-+ -.|+.|.|...|||++
T Consensus 93 CyCdeWd~~eyl~~~~~~C~GP~LYVhr~ 121 (215)
T PF04532_consen 93 CYCDEWDTNEYLAECAYFCRGPLLYVHRK 121 (215)
T ss_pred eeecceehhhHHhhCCcccCCceEEEEcc
Confidence 666655433333 2788999999999994
No 122
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=25.63 E-value=46 Score=23.90 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021423 244 FVVIFAILGIAYGFLAATMAIQ 265 (312)
Q Consensus 244 ~~~~~~i~g~~~~~~~~~~~~~ 265 (312)
++++.++++++.+++++-.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~~ 25 (70)
T PF00672_consen 4 LFLIILLLSLLLAWLLARRITR 25 (70)
T ss_dssp HHHHHHHHHHHHHHH--HTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444433
No 123
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.58 E-value=72 Score=30.01 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhh
Q 021423 260 ATMAIQKIWQKH 271 (312)
Q Consensus 260 ~~~~~~ri~~r~ 271 (312)
+.+.|.|.||+|
T Consensus 34 ~~lfGW~ywq~~ 45 (207)
T COG2976 34 GGLFGWRYWQSH 45 (207)
T ss_pred HHHHHHHHHHHH
Confidence 357799999988
No 124
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.55 E-value=1.2e+02 Score=30.51 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCccCCCCCChHHHHHHhhhc
Q 021423 248 FAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGSYTPPKLDSEHEERLKMLK 310 (312)
Q Consensus 248 ~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~~~~~~l~~~~~~~l~~l~ 310 (312)
+.++..+-.+++..-++.=+||||-|. ++-..|| ++++.|+.-..=|||.-+|.|.+.
T Consensus 191 ~~l~~~~~~~~~via~~D~~~qr~~~~-k~lkMsk----qEVKdE~Ke~EGdP~iK~rrR~~~ 248 (359)
T PRK05702 191 LKLLLLVVLALLVIAAIDVPFQRWQYL-KKLKMTK----QEVKDEHKQSEGDPEVKGRIRQLQ 248 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCH----HHHHHHHHhccCCHHHHHHHHHHH
Confidence 333333333444445567789988775 4444566 344555666666888888777653
No 125
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=24.77 E-value=89 Score=27.42 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=5.1
Q ss_pred hcccccceeeecC
Q 021423 277 KKELTKEYVVEDL 289 (312)
Q Consensus 277 k~~ltk~~~v~d~ 289 (312)
+++.=..|+.+|.
T Consensus 74 s~DPyh~YIe~d~ 86 (129)
T PF02060_consen 74 SHDPYHQYIEEDD 86 (129)
T ss_dssp ---TTTTTS-TTT
T ss_pred ccChHHHHhHHHH
Confidence 4455556666553
No 126
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=24.46 E-value=17 Score=36.22 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchh
Q 021423 242 IVFVVIFAILGIAYGFLAATMAIQKIWQKHYHILTK 277 (312)
Q Consensus 242 ~~~~~~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k 277 (312)
+|+++++.++|++ ++++|+++-+|.| |+-+.-.|
T Consensus 200 lv~Iv~~cvaG~a-Aliva~~cW~Rlq-r~~rlaqk 233 (341)
T PF06809_consen 200 LVLIVVCCVAGAA-ALIVAGYCWYRLQ-REIRLAQK 233 (341)
T ss_pred eehhHHHHHHHHH-HHHHhhheEEEec-cccccccc
Confidence 3455556666775 8999999998874 44443333
No 127
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=24.42 E-value=37 Score=34.55 Aligned_cols=54 Identities=19% Similarity=0.613 Sum_probs=37.3
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
+.+.|-.|.++- +-.+.-..||.|- .-|-+-| |-..+++ -.-+|+-|+..|.-+
T Consensus 13 eed~cplcie~m-ditdknf~pc~cg---y~ic~fc---~~~irq~-lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPM-DITDKNFFPCPCG---YQICQFC---YNNIRQN-LNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCccccccc-ccccCCcccCCcc---cHHHHHH---HHHHHhh-ccCCChHhhhhcccc
Confidence 456799999764 5567778999992 2255555 6555543 235899999998754
No 128
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=24.42 E-value=1.4e+02 Score=25.05 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021423 243 VFVVIFAILGIAYGFLAATMAIQKIWQ 269 (312)
Q Consensus 243 ~~~~~~~i~g~~~~~~~~~~~~~ri~~ 269 (312)
++++.+++.|.+.++++++ -||.|
T Consensus 63 lvil~s~v~G~Li~~~~~~---~Ri~~ 86 (98)
T COG5416 63 LVILGAAVVGALIAMFAGI---ARILQ 86 (98)
T ss_pred HHHHHHHHHHHHHHHHHhH---HHHHH
Confidence 3456678888887777764 57777
No 129
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.40 E-value=1.7e+02 Score=30.04 Aligned_cols=51 Identities=22% Similarity=0.494 Sum_probs=32.7
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhh---HHHHHHhhcCCCcccccccCceeeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRAC---LDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~C---L~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
..+...|-||-++-+ -.-+.||. |+.| -.+-++- .++..|.+|+++.....
T Consensus 58 DEen~~C~ICA~~~T---Ys~~~PC~--------H~~CH~Ca~RlRAL---Y~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTT---YSARYPCG--------HQICHACAVRLRAL---YMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCce---EEEeccCC--------chHHHHHHHHHHHH---HhccCCCccccccceEE
Confidence 445679999997643 34567886 4444 3333332 24679999999987553
No 130
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.33 E-value=1.1e+02 Score=26.34 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 021423 239 ALVIVFVVIFAILGIA 254 (312)
Q Consensus 239 ~~~~~~~~~~~i~g~~ 254 (312)
+.++||-+++.|+|+.
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 4444444444555543
No 131
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=24.31 E-value=46 Score=36.66 Aligned_cols=69 Identities=25% Similarity=0.559 Sum_probs=45.9
Q ss_pred ceeEeccCCCCCCCCcccccccCCCC--cccchhhH-------HHHHHhh----cCCCcccccccCceeeeeeecccccc
Q 021423 56 CCRICLENDGEPDDELISPCMCKGTQ--QFVHRACL-------DHWRSVK----EGFAFSHCTTCKAQFHLRVELFEDNS 122 (312)
Q Consensus 56 ~CRIC~~~e~~~~~~LIsPC~CkGS~--kyVH~~CL-------~~Wl~~s----~~~~~~~CElCk~~Y~~~~~~~~~~~ 122 (312)
=|..|-++.+=.+||||. |+|-. --|||.|- --|+=.| +.....+||+|-+++--- +.-+...
T Consensus 7 GCCVCSDErGWaeNPLVY---CDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGAL-KkTDn~G 82 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVY---CDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGAL-KKTDNGG 82 (900)
T ss_pred ceeeecCcCCCccCceee---ecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccce-ecccCCC
Confidence 488999877667899985 55543 45999996 3576432 223568999998887653 2234567
Q ss_pred ccccce
Q 021423 123 WRKIKF 128 (312)
Q Consensus 123 W~~lk~ 128 (312)
|...-.
T Consensus 83 WAHVVC 88 (900)
T KOG0956|consen 83 WAHVVC 88 (900)
T ss_pred ceEEEE
Confidence 876543
No 132
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.94 E-value=1.3e+02 Score=30.19 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCccCCCCCChHHHHHHhhhc
Q 021423 246 VIFAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGSYTPPKLDSEHEERLKMLK 310 (312)
Q Consensus 246 ~~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~~~~~~l~~~~~~~l~~l~ 310 (312)
+++.+++.+-.+++..-++.-.|||+-|. ++-..|| ++++.|+.-..=|||.-+|.|.+.
T Consensus 191 ~~~~l~~~~~~~~~via~~D~~~q~~~~~-k~lkMSk----qEVKdE~Ke~EGdP~iK~r~Rq~~ 250 (358)
T PRK13109 191 VAIRLVSAVAIATIVLVALDLVWARFHWR-RSLRMTK----QEIKDEHKQAEGDPSVKARLRSLA 250 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCH----HHHHHHHHhccCCHHHHHHHHHHH
Confidence 33444444455555566677789987775 4444566 344555566666888888777653
No 133
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=23.71 E-value=2.8e+02 Score=24.72 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCC
Q 021423 245 VVIFAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHG 291 (312)
Q Consensus 245 ~~~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~ 291 (312)
++.+++++++.+.++.+....++++++=.|+-.-.++|++.|+.-..
T Consensus 19 ~l~~~~~~l~~~~v~l~~~~~~~~~~~~~vivPp~~~~~~~vs~~~a 65 (187)
T PF05309_consen 19 LLLLLLLVLLIANVVLGYLLYAASTNQRTVIVPPTLNKPFWVSGNSA 65 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCcccccEEEECCcC
Confidence 34444555555555555556667777778888889999999987654
No 134
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=23.66 E-value=70 Score=32.26 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021423 240 LVIVFVVIFAILGIAYGFLAA 260 (312)
Q Consensus 240 ~~~~~~~~~~i~g~~~~~~~~ 260 (312)
.+++++++|+++|+.|+||+.
T Consensus 34 ~Ii~~~l~~~~~al~ys~l~~ 54 (347)
T COG3765 34 TIIGIVLLFAAAALGYSFLAP 54 (347)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 456788999999999999863
No 135
>COG4025 Predicted membrane protein [Function unknown]
Probab=23.46 E-value=97 Score=30.14 Aligned_cols=16 Identities=50% Similarity=1.067 Sum_probs=13.1
Q ss_pred ceeehhhHHHHHHHhh
Q 021423 181 PFYYCIGVMAFFVLLG 196 (312)
Q Consensus 181 ~F~~~~gvv~F~~lvg 196 (312)
.|||.+|.+.|.+.+|
T Consensus 159 ~~y~~igtv~~la~l~ 174 (284)
T COG4025 159 FFYYGIGTVTFLAFLG 174 (284)
T ss_pred hhhhhhhhhhhhhhhh
Confidence 4889999998888774
No 136
>PF12216 m04gp34like: Immune evasion protein; InterPro: IPR022022 The proteins in this family are related to the m04 encoded protein gp34 of pathogenic microorganisms such as Murid herpesvirus 1. m06 and m152 genes are expressed earlier in the intracellular replication phases of these microorganism' life cycles. They function to inhibit MHC-1 loading and export. gp34 is theorized to prevent immune reactions from NK cells which would ordinarily recognise and attack cells lacking MHC.
Probab=22.90 E-value=36 Score=33.07 Aligned_cols=19 Identities=32% Similarity=0.693 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021423 238 FALVIVFVVIFAILGIAYG 256 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~~ 256 (312)
+++++++|++|+++|.+||
T Consensus 238 v~vv~i~va~~~vL~y~Y~ 256 (272)
T PF12216_consen 238 VIVVLIFVAAVIVLAYLYG 256 (272)
T ss_pred eeehhHHHHHHHHhhhhcc
Confidence 3556677888888999998
No 137
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.67 E-value=74 Score=32.63 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=34.9
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhh---HHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRAC---LDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~C---L~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..+...|-||+.++ -+..+.||+ |++| ..+=+. +.+.|=.||+...-.
T Consensus 419 ~sEd~lCpICyA~p---i~Avf~PC~--------H~SC~~CI~qHlm-----N~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 419 DSEDNLCPICYAGP---INAVFAPCS--------HRSCYGCITQHLM-----NCKRCFFCKTTVIDV 469 (489)
T ss_pred CcccccCcceeccc---chhhccCCC--------CchHHHHHHHHHh-----cCCeeeEecceeeeh
Confidence 36678999999875 488999997 5554 444443 346899999987753
No 138
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=22.50 E-value=1.6e+02 Score=29.23 Aligned_cols=61 Identities=8% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCccCCCCCChHHHHHHhh
Q 021423 238 FALVIVFVVIFAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGSYTPPKLDSEHEERLKM 308 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~~~~~~l~~~~~~~l~~ 308 (312)
+.++.+.+++|...|+++|+.=..-..-+-|+=-.=++.| |-+.......|+.+.+.+.++
T Consensus 20 ~~i~f~~~Lv~~~~Gl~~Gl~~~~~~~i~~~~ad~~v~~~----------~~~~~~~~s~l~~~~~~~~~~ 80 (380)
T TIGR01185 20 AGIAFADILMFMQIGFRDALYYSNVRLHTSLQGDIVLLNK----------QSNAVLAMKPFSQRRLYKSLE 80 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhcCCCCEEEECC----------CcchhhccCCCCHHHHHHHhC
Confidence 4566678889999999999887776665555422222222 333446677788888755543
No 139
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.06 E-value=93 Score=27.53 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 021423 247 IFAILGIAYGFLAA 260 (312)
Q Consensus 247 ~~~i~g~~~~~~~~ 260 (312)
+-.||||+.|+++|
T Consensus 13 igLvvGi~IG~li~ 26 (138)
T COG3105 13 IGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666666665
No 140
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=21.92 E-value=38 Score=33.78 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=37.5
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeeec
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVEL 117 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~~ 117 (312)
-.+...||||.+-- .-|++.||. .-.-.-|+.+-+.. ...|++|.+++.....+
T Consensus 22 LDs~lrC~IC~~~i---~ip~~TtCg-----HtFCslCIR~hL~~-----qp~CP~Cr~~~~esrlr 75 (391)
T COG5432 22 LDSMLRCRICDCRI---SIPCETTCG-----HTFCSLCIRRHLGT-----QPFCPVCREDPCESRLR 75 (391)
T ss_pred chhHHHhhhhhhee---ecceecccc-----cchhHHHHHHHhcC-----CCCCccccccHHhhhcc
Confidence 44567899999754 367788875 22234577777754 46899999999876533
No 141
>PRK09108 type III secretion system protein HrcU; Validated
Probab=21.81 E-value=1.5e+02 Score=29.73 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCccCCCCCChHHHHHHhhh
Q 021423 243 VFVVIFAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGSYTPPKLDSEHEERLKML 309 (312)
Q Consensus 243 ~~~~~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~~~~~~l~~~~~~~l~~l 309 (312)
+.-+++.++..+-++++..-++.-.|||+-|. ++-..|| +|++.|+.-..=|||.-+|.|.+
T Consensus 181 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~-k~lkMSk----qEvK~E~K~~EGdP~iK~rrRq~ 242 (353)
T PRK09108 181 LWTVLMKLLAVAAGVFLLVGAADWKIQRWLFI-RDNRMSK----DEVKREHKESEGDPHIKGERKRL 242 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCH----HHHHHHHHhccCCHHHHHHHHHH
Confidence 33334444444444555555667789987775 4444466 34455566666688888877765
No 142
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=21.72 E-value=1.1e+02 Score=22.34 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=16.1
Q ss_pred eEEeccchhhcccc-chhhhhcc
Q 021423 155 YLMDKDGAFRNSFS-DGWDRILS 176 (312)
Q Consensus 155 yLi~~~~~f~n~~S-~~w~riL~ 176 (312)
|-+-+++..++-++ +.|+++.+
T Consensus 20 Y~viG~G~p~~vf~~~tW~hi~d 42 (47)
T PF11772_consen 20 YGVIGDGNPFDVFSPDTWQHIID 42 (47)
T ss_pred eeeeCCCCHHHhCCHHHHHHHHH
Confidence 77666667777777 78988765
No 143
>PRK09110 flagellar motor protein MotA; Validated
Probab=21.67 E-value=1.1e+02 Score=29.72 Aligned_cols=46 Identities=20% Similarity=0.106 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHhhhhccchhcccccceeeecCCCc
Q 021423 247 IFAILGIAYGFLAATMAI----QKIWQKHYHILTKKELTKEYVVEDLHGS 292 (312)
Q Consensus 247 ~~~i~g~~~~~~~~~~~~----~ri~~r~y~~l~k~~ltk~~~v~d~~~~ 292 (312)
..|++|-+||++.|-.+. .|+=+|.=.-...++..+|=++.=.+|+
T Consensus 203 AvAlv~TlyGi~lAn~i~~PiA~kl~~~~~~e~~~~~~i~egi~ai~~G~ 252 (283)
T PRK09110 203 GAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQCIKVTLLASLNGY 252 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 358889999999888766 5666655555555556666555555563
No 144
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=21.64 E-value=1.3e+02 Score=36.02 Aligned_cols=45 Identities=31% Similarity=0.555 Sum_probs=31.7
Q ss_pred CCccccc--CCcccchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021423 223 GWGVLDC--FPASMEACFA------LVIVFVVIFAILGIAYGFLAATMAIQKI 267 (312)
Q Consensus 223 ~~~~~~c--~~~~~~~~~~------~~~~~~~~~~i~g~~~~~~~~~~~~~ri 267 (312)
|.|++|= -|+..|+-|+ ++..|+++..++-+.||++|-|.+--|-
T Consensus 2522 GGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIVLNLIFGVIIDTFaDLRs 2574 (2706)
T KOG3533|consen 2522 GGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIVLNLIFGVIIDTFADLRS 2574 (2706)
T ss_pred CCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 4445554 4566677775 3445677777889999999999987653
No 145
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=21.63 E-value=1.2e+02 Score=24.64 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021423 246 VIFAILGIAYGFLAATMAI 264 (312)
Q Consensus 246 ~~~~i~g~~~~~~~~~~~~ 264 (312)
..++|++.+|-++.+..+.
T Consensus 73 ~a~liv~~~~l~la~i~~~ 91 (121)
T PF07332_consen 73 LAFLIVAGLYLLLALILLL 91 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555666666655554443
No 146
>PHA02047 phage lambda Rz1-like protein
Probab=21.59 E-value=1e+02 Score=25.90 Aligned_cols=21 Identities=33% Similarity=0.844 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021423 240 LVIVFVVIFAILGIAYGFLAA 260 (312)
Q Consensus 240 ~~~~~~~~~~i~g~~~~~~~~ 260 (312)
++.|.+++.+.+|-.|||..+
T Consensus 5 ~~~~~~~v~~~~g~~y~~~~~ 25 (101)
T PHA02047 5 IVAILVLVVVALGASYGFVQS 25 (101)
T ss_pred HHHHHHHHHHHhhhhHHHHHH
Confidence 456677777888999999874
No 147
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.57 E-value=1.2e+02 Score=23.40 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021423 245 VVIFAILGIAYGFLAAT 261 (312)
Q Consensus 245 ~~~~~i~g~~~~~~~~~ 261 (312)
+++.+++|++.|+.++.
T Consensus 62 l~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 62 LALGLFLGLILGIGLAF 78 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666666543
No 148
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.56 E-value=1.2e+02 Score=24.34 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021423 245 VVIFAILGIAYGFLAATMAI 264 (312)
Q Consensus 245 ~~~~~i~g~~~~~~~~~~~~ 264 (312)
+++.+|+||+-++++-.+..
T Consensus 16 LVvl~Iigil~~~~~p~~~~ 35 (149)
T COG2165 16 LVVLAIIGILAALALPSLQG 35 (149)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 34456666666665554444
No 149
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=21.44 E-value=99 Score=24.24 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.1
Q ss_pred hcccccceeeecCCC
Q 021423 277 KKELTKEYVVEDLHG 291 (312)
Q Consensus 277 k~~ltk~~~v~d~~~ 291 (312)
|..-|+.|.++|.++
T Consensus 39 q~~At~~Y~~~d~~~ 53 (66)
T PF13179_consen 39 QEQATNPYKLKDANN 53 (66)
T ss_pred HHHhcCCccccChHH
Confidence 567789999988876
No 150
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=21.39 E-value=1.4e+02 Score=27.03 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=25.4
Q ss_pred ccchhhhhccCCCcceeehhhHHHHHHHhhhhcee
Q 021423 167 FSDGWDRILSKHPIPFYYCIGVMAFFVLLGFFGLI 201 (312)
Q Consensus 167 ~S~~w~riL~~~~~~F~~~~gvv~F~~lvg~~Gli 201 (312)
+.+.+.++ =|.+|-|.+.+|+..|++-++++|-|
T Consensus 98 P~~~f~~~-cE~~W~~s~~lGi~lFL~~l~l~~WI 131 (175)
T PF07856_consen 98 PHRRFHRY-CELAWRFSTVLGIPLFLAELALLGWI 131 (175)
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 33444444 24567788899999999999988887
No 151
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=21.39 E-value=1.6e+02 Score=29.44 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCccCCCCCChHHHHHHhhhc
Q 021423 248 FAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGSYTPPKLDSEHEERLKMLK 310 (312)
Q Consensus 248 ~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~~~~~~l~~~~~~~l~~l~ 310 (312)
+.++..+-.+++..-++.=.|||+-|. ++-..|| ++++.|+.-..=|||.-+|.|.+.
T Consensus 184 ~~l~~~~~~~~~via~~D~~~qr~~~~-k~lrMsk----qEVKdE~K~~EGdP~iK~rrR~~~ 241 (347)
T TIGR00328 184 KSLLILVLLLLLVIAVFDYFFQRWQYI-KSLKMTK----QEVKDELKQSEGDPEVKGRIRQMQ 241 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCH----HHHHHHHHhccCCHHHHHHHHHHH
Confidence 333333444444555667789987775 4444466 344555566666888888877653
No 152
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.33 E-value=1.2e+02 Score=28.50 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021423 240 LVIVFVVIFAILGIAYGFLAATMAIQK 266 (312)
Q Consensus 240 ~~~~~~~~~~i~g~~~~~~~~~~~~~r 266 (312)
++++++++++|+|+-|-|.++.+.-++
T Consensus 25 lv~~lL~~~~V~~lGy~f~~s~k~eel 51 (211)
T COG3167 25 LVFCLLAVAAVLGLGYAFYLSGKLEEL 51 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 667788899999999999998886544
No 153
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=21.25 E-value=2.7e+02 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHh
Q 021423 243 VFVVIFAILGIAY----GFLAATMAIQKIWQ 269 (312)
Q Consensus 243 ~~~~~~~i~g~~~----~~~~~~~~~~ri~~ 269 (312)
.++++.+++|.+. .+++++.+++=+|+
T Consensus 14 ~~~l~~~lvG~~~g~~~~~l~~~l~~~l~wh 44 (90)
T PF11808_consen 14 LLLLAAALVGWLFGHLWWALLLGLLLYLFWH 44 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444445555444 45666666666665
No 154
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.12 E-value=33 Score=26.12 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.3
Q ss_pred ccccccCceeeeee
Q 021423 102 SHCTTCKAQFHLRV 115 (312)
Q Consensus 102 ~~CElCk~~Y~~~~ 115 (312)
++|..|+.+.....
T Consensus 4 kHC~~CG~~Ip~~~ 17 (59)
T PF09889_consen 4 KHCPVCGKPIPPDE 17 (59)
T ss_pred CcCCcCCCcCCcch
Confidence 58999999888764
No 155
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.05 E-value=3.1e+02 Score=19.99 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021423 239 ALVIVFVVIFAILGIAYGFLAATMAIQKIWQ 269 (312)
Q Consensus 239 ~~~~~~~~~~~i~g~~~~~~~~~~~~~ri~~ 269 (312)
.++++..++=+++|.++++....-.-.|+.+
T Consensus 22 l~il~~f~~G~llg~l~~~~~~~~~r~~~~~ 52 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLSLPSRLRLRRRIRR 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666777777777666666666
No 156
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.99 E-value=24 Score=34.79 Aligned_cols=69 Identities=22% Similarity=0.496 Sum_probs=44.5
Q ss_pred CCCCCceeEeccCCCCC--CCCc---ccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeeeccccccccc
Q 021423 51 NGSLPCCRICLENDGEP--DDEL---ISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRK 125 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~--~~~L---IsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~~~~~~~W~~ 125 (312)
..+...|-+|-+.-..+ ++-+ +.-=.| ..-.|+-|.+-|-... ++..|+-||.+...+. ...+.|++
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsC---nHvFHEfCIrGWcivG---KkqtCPYCKekVdl~r--mfsnpWek 292 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSC---NHVFHEFCIRGWCIVG---KKQTCPYCKEKVDLKR--MFSNPWEK 292 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeec---ccchHHHhhhhheeec---CCCCCchHHHHhhHhh--hccCcccc
Confidence 45566899998643211 1111 122234 3678999999998753 4689999999877653 34567877
Q ss_pred cc
Q 021423 126 IK 127 (312)
Q Consensus 126 lk 127 (312)
-.
T Consensus 293 ph 294 (328)
T KOG1734|consen 293 PH 294 (328)
T ss_pred ch
Confidence 54
No 157
>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated
Probab=20.96 E-value=2.2e+02 Score=22.42 Aligned_cols=13 Identities=31% Similarity=0.225 Sum_probs=9.2
Q ss_pred cchhcccccceee
Q 021423 274 ILTKKELTKEYVV 286 (312)
Q Consensus 274 ~l~k~~ltk~~~v 286 (312)
..+...|+|||+.
T Consensus 52 ~~~~~~~~k~~~~ 64 (70)
T MTH00025 52 FSKGLGLNKEVVF 64 (70)
T ss_pred CccccchhhhHHH
Confidence 4566788888864
No 158
>PLN03160 uncharacterized protein; Provisional
Probab=20.93 E-value=49 Score=30.64 Aligned_cols=10 Identities=40% Similarity=1.072 Sum_probs=5.5
Q ss_pred ccccccccCC
Q 021423 213 RMAGCQNCCY 222 (312)
Q Consensus 213 ~~~~~~~c~~ 222 (312)
.+..|..||.
T Consensus 32 ~r~~~~~c~~ 41 (219)
T PLN03160 32 RRRNCIKCCG 41 (219)
T ss_pred ccccceEEHH
Confidence 4555665654
No 159
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=20.56 E-value=2e+02 Score=22.98 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHh--hhhccchhcc
Q 021423 252 GIAYGFLAATMAIQKIWQ--KHYHILTKKE 279 (312)
Q Consensus 252 g~~~~~~~~~~~~~ri~~--r~y~~l~k~~ 279 (312)
+++.|+++. ++-.++| |=+.=|.+..
T Consensus 32 ~l~~~l~~~--l~wh~~~l~rL~~WL~~~~ 59 (90)
T PF11808_consen 32 ALLLGLLLY--LFWHLYQLYRLERWLRNPR 59 (90)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhCCC
Confidence 344444433 4455666 5565565543
No 160
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=20.50 E-value=98 Score=27.65 Aligned_cols=17 Identities=24% Similarity=0.555 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021423 248 FAILGIAYGFLAATMAI 264 (312)
Q Consensus 248 ~~i~g~~~~~~~~~~~~ 264 (312)
|.++|.+||+++|.++.
T Consensus 2 ~~~vg~l~al~laf~~~ 18 (209)
T PF14023_consen 2 FGVVGVLFALLLAFTIS 18 (209)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 56778888887776654
No 161
>PHA03375 hypothetical protein; Provisional
Probab=20.43 E-value=34 Score=37.54 Aligned_cols=28 Identities=25% Similarity=0.768 Sum_probs=21.1
Q ss_pred eccCCCCCCCCcc-cccccCCCCcccchh
Q 021423 60 CLENDGEPDDELI-SPCMCKGTQQFVHRA 87 (312)
Q Consensus 60 C~~~e~~~~~~LI-sPC~CkGS~kyVH~~ 87 (312)
|+.+|.+.++-|. .+|+|.|..-|||+.
T Consensus 99 CycdeWd~~eyl~~~~~~C~gP~LYvhr~ 127 (844)
T PHA03375 99 CYCDEWDVNEYLAKTACNCRGPLLYIHRS 127 (844)
T ss_pred ccccchhhhhhhhhcccccCCceEEEEec
Confidence 7766655444443 899999999999993
No 162
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=20.39 E-value=1.1e+02 Score=21.42 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=15.7
Q ss_pred CCcccchhHHHHHHHHHHHHHHHH
Q 021423 230 FPASMEACFALVIVFVVIFAILGI 253 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~i~g~ 253 (312)
+...+|=||.+=.=++++.+|+|+
T Consensus 14 g~~~~eCCf~lq~Wv~v~l~v~~v 37 (38)
T PF10853_consen 14 GDLNKECCFRLQIWVIVLLAVLGV 37 (38)
T ss_pred CCChHhHHHHHHHHHHHHHHHHhc
Confidence 455577788776655566666664
No 163
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=20.33 E-value=40 Score=26.32 Aligned_cols=34 Identities=24% Similarity=0.553 Sum_probs=22.6
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHH
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDH 91 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~ 91 (312)
.+...|.+|...-.. ..=.+.||. ..+|..|..+
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCC-----eEEecccccC
Confidence 446789999987642 222346653 7799999753
No 164
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK08156 type III secretion system protein SpaS; Validated
Probab=20.01 E-value=1.8e+02 Score=29.39 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCccCCCCCChHHHHHHhhh
Q 021423 248 FAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGSYTPPKLDSEHEERLKML 309 (312)
Q Consensus 248 ~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~~~~~~l~~~~~~~l~~l 309 (312)
+.++..+-++++..-++.-.|||+-|. +|-..|| ++++.|+.-..=|||.-+|.|.+
T Consensus 179 ~~l~~~~~~~~lvia~~D~~~Qr~~~~-k~lkMSk----qEvKdE~Ke~EGdP~iK~r~R~~ 235 (361)
T PRK08156 179 VKLVLTFLACALIVLILDFIAEYFLHM-KDMKMDK----QEVKREYKEQEGNPEIKSKRREA 235 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCH----HHHHHHHHhccCCHHHHHHHHHH
Confidence 333333334444445566689987765 4444566 34455566666688877777765
No 166
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=20.00 E-value=1.2e+02 Score=26.69 Aligned_cols=6 Identities=67% Similarity=1.730 Sum_probs=4.9
Q ss_pred HHhhhh
Q 021423 267 IWQKHY 272 (312)
Q Consensus 267 i~~r~y 272 (312)
+|+|+|
T Consensus 93 ~~~r~~ 98 (142)
T PF02936_consen 93 IWQRSY 98 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 788887
Done!