Query 021423
Match_columns 312
No_of_seqs 191 out of 772
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 03:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 2.4E-18 8.3E-23 127.3 3.3 57 52-114 4-60 (60)
2 2d8s_A Cellular modulator of i 99.6 1.4E-16 4.9E-21 123.8 5.3 66 51-120 12-77 (80)
3 2ect_A Ring finger protein 126 97.7 1.8E-05 6.3E-10 58.7 3.2 54 51-114 12-65 (78)
4 2kiz_A E3 ubiquitin-protein li 97.7 2.5E-05 8.4E-10 56.7 3.8 54 51-114 11-64 (69)
5 2ep4_A Ring finger protein 24; 97.6 4.1E-05 1.4E-09 56.2 4.1 52 52-113 13-64 (74)
6 1iym_A EL5; ring-H2 finger, ub 97.6 2.7E-05 9.4E-10 53.9 2.2 53 52-113 3-55 (55)
7 2l0b_A E3 ubiquitin-protein li 97.5 2E-05 7E-10 60.9 0.5 54 50-113 36-89 (91)
8 1x4j_A Ring finger protein 38; 97.5 5.1E-05 1.8E-09 56.1 2.7 53 51-113 20-72 (75)
9 2ecm_A Ring finger and CHY zin 97.3 0.00013 4.5E-09 50.3 3.0 51 52-112 3-54 (55)
10 1v87_A Deltex protein 2; ring- 97.3 0.00017 5.7E-09 57.1 3.6 58 53-115 24-96 (114)
11 2ecl_A Ring-box protein 2; RNF 97.2 0.00014 4.8E-09 55.2 2.7 52 54-114 15-77 (81)
12 2ysl_A Tripartite motif-contai 97.2 0.00018 6.3E-09 52.3 3.2 54 51-114 17-70 (73)
13 2ct2_A Tripartite motif protei 97.2 0.0003 1E-08 52.7 4.3 56 52-114 13-69 (88)
14 2d8t_A Dactylidin, ring finger 97.1 0.00014 4.7E-09 53.3 1.8 51 51-114 12-62 (71)
15 2ea6_A Ring finger protein 4; 97.1 0.00014 4.6E-09 52.1 1.6 51 52-112 13-67 (69)
16 2csy_A Zinc finger protein 183 97.1 0.00044 1.5E-08 51.7 4.1 49 51-112 12-60 (81)
17 2yur_A Retinoblastoma-binding 97.1 0.00042 1.5E-08 51.2 3.8 51 51-112 12-63 (74)
18 2ecw_A Tripartite motif-contai 97.0 0.0011 3.8E-08 48.8 5.4 55 52-114 17-72 (85)
19 2ysj_A Tripartite motif-contai 97.0 0.00095 3.3E-08 47.4 4.7 47 51-107 17-63 (63)
20 2ecv_A Tripartite motif-contai 96.9 0.0014 4.7E-08 48.3 5.1 56 51-114 16-72 (85)
21 2djb_A Polycomb group ring fin 96.8 0.00084 2.9E-08 49.2 3.4 50 52-114 13-63 (72)
22 1chc_A Equine herpes virus-1 r 96.7 0.0016 5.3E-08 46.8 4.1 51 53-115 4-54 (68)
23 2ecn_A Ring finger protein 141 96.6 0.00035 1.2E-08 50.7 0.3 50 51-114 12-61 (70)
24 2ecy_A TNF receptor-associated 96.5 0.0014 4.8E-08 47.0 2.6 51 51-113 12-62 (66)
25 3ng2_A RNF4, snurf, ring finge 96.4 0.00056 1.9E-08 49.3 0.1 54 51-114 7-64 (71)
26 3dpl_R Ring-box protein 1; ubi 96.4 0.0021 7.1E-08 51.9 3.4 52 53-114 36-102 (106)
27 2ecj_A Tripartite motif-contai 96.3 0.0031 1.1E-07 43.5 3.7 47 51-107 12-58 (58)
28 2xeu_A Ring finger protein 4; 96.3 0.00061 2.1E-08 47.9 -0.3 52 53-114 2-57 (64)
29 1e4u_A Transcriptional repress 96.0 0.0049 1.7E-07 46.9 3.8 56 52-115 9-64 (78)
30 2ct0_A Non-SMC element 1 homol 96.0 0.0045 1.5E-07 47.3 3.6 53 53-115 14-66 (74)
31 4a0k_B E3 ubiquitin-protein li 95.9 0.0016 5.6E-08 53.7 0.6 54 53-114 47-113 (117)
32 3ztg_A E3 ubiquitin-protein li 95.7 0.0069 2.4E-07 45.9 3.2 51 51-112 10-61 (92)
33 1jm7_A BRCA1, breast cancer ty 95.2 0.011 3.7E-07 46.1 2.9 51 54-114 21-71 (112)
34 1t1h_A Gspef-atpub14, armadill 95.2 0.0084 2.9E-07 44.1 2.1 52 51-114 5-56 (78)
35 3k1l_B Fancl; UBC, ring, RWD, 95.1 0.023 7.9E-07 55.4 5.4 59 52-114 306-374 (381)
36 4ayc_A E3 ubiquitin-protein li 95.0 0.0055 1.9E-07 50.4 0.7 47 55-114 54-100 (138)
37 2y43_A E3 ubiquitin-protein li 94.9 0.0032 1.1E-07 48.6 -0.9 48 53-113 21-69 (99)
38 1g25_A CDK-activating kinase a 94.8 0.0075 2.6E-07 43.0 1.0 53 53-114 2-56 (65)
39 2egp_A Tripartite motif-contai 94.8 0.0049 1.7E-07 45.2 -0.1 55 52-114 10-66 (79)
40 2y1n_A E3 ubiquitin-protein li 94.8 0.024 8.1E-07 55.6 4.6 51 53-115 331-381 (389)
41 3lrq_A E3 ubiquitin-protein li 94.6 0.012 3.9E-07 46.0 1.7 52 51-114 19-71 (100)
42 2ckl_B Ubiquitin ligase protei 94.2 0.01 3.4E-07 50.0 0.5 49 53-113 53-102 (165)
43 3fl2_A E3 ubiquitin-protein li 94.2 0.017 5.7E-07 46.4 1.8 49 53-113 51-99 (124)
44 1z6u_A NP95-like ring finger p 93.3 0.028 9.7E-07 47.3 1.8 49 54-114 78-126 (150)
45 1rmd_A RAG1; V(D)J recombinati 93.3 0.013 4.5E-07 46.4 -0.3 49 54-114 23-71 (116)
46 2ecg_A Baculoviral IAP repeat- 93.3 0.01 3.4E-07 44.0 -1.0 47 52-115 23-70 (75)
47 4ic3_A E3 ubiquitin-protein li 93.1 0.0043 1.5E-07 46.1 -3.2 48 52-116 22-70 (74)
48 4ap4_A E3 ubiquitin ligase RNF 93.1 0.013 4.4E-07 46.4 -0.7 53 52-114 5-61 (133)
49 2ckl_A Polycomb group ring fin 93.0 0.024 8.3E-07 44.4 0.8 49 53-114 14-63 (108)
50 2ea5_A Cell growth regulator w 93.0 0.12 4E-06 38.0 4.4 52 51-118 12-63 (68)
51 3l11_A E3 ubiquitin-protein li 92.8 0.0075 2.6E-07 47.7 -2.5 48 54-113 15-62 (115)
52 3hct_A TNF receptor-associated 92.7 0.058 2E-06 43.0 2.7 50 52-113 16-65 (118)
53 2vje_B MDM4 protein; proto-onc 91.7 0.056 1.9E-06 39.0 1.3 53 52-116 5-59 (63)
54 3knv_A TNF receptor-associated 91.5 0.034 1.2E-06 46.4 -0.0 52 50-113 27-78 (141)
55 4ap4_A E3 ubiquitin ligase RNF 91.1 0.043 1.5E-06 43.3 0.2 54 51-114 69-126 (133)
56 1wgm_A Ubiquitin conjugation f 90.6 0.19 6.6E-06 39.4 3.5 53 50-114 18-70 (98)
57 2vje_A E3 ubiquitin-protein li 89.6 0.14 4.7E-06 37.0 1.8 52 53-116 7-60 (64)
58 1jm7_B BARD1, BRCA1-associated 89.2 0.088 3E-06 41.9 0.5 47 52-113 20-67 (117)
59 2kr4_A Ubiquitin conjugation f 87.9 0.33 1.1E-05 36.9 3.0 51 51-114 11-61 (85)
60 2kre_A Ubiquitin conjugation f 86.4 0.35 1.2E-05 38.1 2.4 52 49-113 24-75 (100)
61 1bor_A Transcription factor PM 86.0 0.22 7.5E-06 34.7 0.9 47 52-114 4-50 (56)
62 2c2l_A CHIP, carboxy terminus 85.9 0.42 1.4E-05 42.1 3.0 51 51-113 205-255 (281)
63 1weu_A Inhibitor of growth fam 84.6 1.5 5.2E-05 34.6 5.3 56 46-110 28-85 (91)
64 3nw0_A Non-structural maintena 84.4 0.43 1.5E-05 43.3 2.3 53 52-115 178-231 (238)
65 3t6p_A Baculoviral IAP repeat- 83.4 0.16 5.5E-06 48.6 -1.0 49 52-116 293-341 (345)
66 3hcs_A TNF receptor-associated 80.8 0.63 2.2E-05 38.9 1.9 51 51-113 15-65 (170)
67 2yho_A E3 ubiquitin-protein li 80.8 0.081 2.8E-06 39.9 -3.4 51 53-119 17-67 (79)
68 1wim_A KIAA0161 protein; ring 79.4 0.87 3E-05 34.6 2.1 55 52-113 3-64 (94)
69 1weo_A Cellulose synthase, cat 78.9 2.1 7.2E-05 34.2 4.1 55 51-112 13-69 (93)
70 2yu4_A E3 SUMO-protein ligase 77.6 1.5 5.1E-05 33.6 3.0 52 51-110 4-59 (94)
71 2lri_C Autoimmune regulator; Z 76.8 0.79 2.7E-05 33.9 1.1 53 49-110 7-59 (66)
72 1wen_A Inhibitor of growth fam 74.9 2.4 8.2E-05 31.7 3.3 54 48-110 10-65 (71)
73 2f42_A STIP1 homology and U-bo 65.6 2.5 8.5E-05 37.0 1.9 52 51-114 103-154 (179)
74 2ku3_A Bromodomain-containing 64.0 4.1 0.00014 30.4 2.5 54 50-109 12-65 (71)
75 2l43_A N-teminal domain from h 62.5 4.5 0.00015 31.3 2.6 53 52-110 23-75 (88)
76 1wev_A Riken cDNA 1110020M19; 61.3 2.1 7.3E-05 33.0 0.6 59 53-114 15-76 (88)
77 2yt5_A Metal-response element- 54.1 5.2 0.00018 28.6 1.5 57 51-110 3-61 (66)
78 2jwa_A Receptor tyrosine-prote 48.3 30 0.001 24.0 4.6 12 267-278 33-44 (44)
79 2lv9_A Histone-lysine N-methyl 46.6 7.9 0.00027 30.3 1.6 50 53-110 27-76 (98)
80 2jwa_A Receptor tyrosine-prote 45.6 32 0.0011 23.9 4.4 22 238-259 14-35 (44)
81 3kv5_D JMJC domain-containing 45.5 2.3 7.9E-05 42.5 -2.0 55 53-112 36-90 (488)
82 3htk_C E3 SUMO-protein ligase 44.7 13 0.00045 34.7 3.0 53 51-114 178-233 (267)
83 2vnf_A ING 4, P29ING4, inhibit 43.1 3.3 0.00011 29.8 -1.0 51 50-109 6-58 (60)
84 2jmi_A Protein YNG1, ING1 homo 42.7 6.5 0.00022 30.9 0.6 52 49-109 21-75 (90)
85 3ql9_A Transcriptional regulat 39.7 20 0.00069 29.9 3.2 51 51-109 54-110 (129)
86 1wil_A KIAA1045 protein; ring 36.8 29 0.00098 27.5 3.4 35 51-92 12-47 (89)
87 2l5u_A Chromodomain-helicase-D 35.1 9.4 0.00032 27.3 0.4 51 51-110 8-58 (61)
88 2bay_A PRE-mRNA splicing facto 32.5 19 0.00064 25.6 1.6 47 55-114 4-51 (61)
89 1iij_A ERBB-2 receptor protein 32.2 17 0.00057 24.2 1.2 22 238-259 10-31 (35)
90 1p7b_A Integral membrane chann 32.1 1E+02 0.0035 29.1 7.1 46 243-292 125-170 (333)
91 2g6q_A Inhibitor of growth pro 31.4 6.6 0.00022 28.5 -1.0 51 50-109 7-59 (62)
92 1pfi_A Major coat protein of P 30.8 43 0.0015 23.2 3.1 18 241-258 26-43 (46)
93 4gne_A Histone-lysine N-methyl 30.1 21 0.00073 28.7 1.7 37 48-90 9-45 (107)
94 2ri7_A Nucleosome-remodeling f 29.7 7.9 0.00027 32.5 -0.9 55 51-110 5-59 (174)
95 2kxw_B Sodium channel protein 29.7 31 0.0011 21.5 2.1 14 259-272 7-20 (27)
96 1we9_A PHD finger family prote 28.4 9 0.00031 27.2 -0.7 56 51-110 3-58 (64)
97 2knc_B Integrin beta-3; transm 26.8 43 0.0015 25.5 2.8 18 252-269 16-33 (79)
98 3c6w_A P28ING5, inhibitor of g 25.5 9.6 0.00033 27.3 -1.0 50 51-109 6-57 (59)
99 1wep_A PHF8; structural genomi 25.4 52 0.0018 24.3 3.1 56 53-113 11-66 (79)
100 2k16_A Transcription initiatio 25.3 25 0.00084 25.7 1.2 55 51-111 15-69 (75)
101 1xl4_A Inward rectifier potass 25.2 2.6E+02 0.0089 25.7 8.4 47 242-292 110-156 (301)
102 3u5n_A E3 ubiquitin-protein li 24.7 9.3 0.00032 33.3 -1.5 52 52-112 5-56 (207)
103 2l53_B CAM, voltage-gated sodi 23.4 46 0.0016 21.4 2.1 14 259-272 7-20 (31)
104 3o70_A PHD finger protein 13; 23.3 18 0.00063 26.5 0.2 51 51-109 16-66 (68)
105 3v43_A Histone acetyltransfera 23.0 28 0.00097 27.5 1.2 36 53-91 4-43 (112)
106 2ysm_A Myeloid/lymphoid or mix 22.8 19 0.00066 28.1 0.2 39 51-94 4-42 (111)
107 3gia_A Uncharacterized protein 22.6 1.2E+02 0.0042 27.7 5.7 18 255-272 406-423 (444)
108 1spf_A Pulmonary surfactant-as 22.3 1.1E+02 0.0037 20.2 3.6 11 250-260 23-33 (35)
109 2k4n_A Protein PF0246; beta-sh 21.8 29 0.00099 27.9 1.0 18 282-299 44-64 (111)
110 2ekk_A UBA domain from E3 ubiq 20.4 64 0.0022 21.6 2.4 21 291-311 1-21 (47)
111 3o36_A Transcription intermedi 20.2 17 0.00057 30.9 -0.7 49 53-110 3-51 (184)
112 1mm2_A MI2-beta; PHD, zinc fin 20.0 17 0.00057 26.0 -0.6 50 52-110 7-56 (61)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.71 E-value=2.4e-18 Score=127.28 Aligned_cols=57 Identities=32% Similarity=0.790 Sum_probs=50.0
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
.+++.||||+++. ++++++||+|+||++|||++||++|+..++ ...||+|+++|+++
T Consensus 4 ~~~~~CrIC~~~~---~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~---~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 4 EDVPVCWICNEEL---GNERFRACGCTGELENVHRSCLSTWLTISR---NTACQICGVVYNTR 60 (60)
T ss_dssp CSCCEETTTTEEC---SCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---CSBCTTTCCBCCCC
T ss_pred CCCCEeEEeecCC---CCceecCcCCCCchhhhHHHHHHHHHHhCC---CCccCCCCCeeecC
Confidence 4578999999863 467999999999999999999999999874 47999999999874
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=123.79 Aligned_cols=66 Identities=35% Similarity=0.800 Sum_probs=56.1
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeeecccc
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELFED 120 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~~~~~ 120 (312)
..+++.||||+++. +++++++.||+|+|+++++|+.||++|+..++ ...|++|+++|.++.+.+++
T Consensus 12 ~~~~~~C~IC~~~~-~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 12 PSSQDICRICHCEG-DDESPLITPCHCTGSLHFVHQACLQQWIKSSD---TRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp CTTSCCCSSSCCCC-CSSSCEECSSSCCSSSCCEETTHHHHHHHHHC---CSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCCeEcCccc-cCCCeeEeccccCCcCCeeCHHHHHHHHhhCC---CCCCCCCCCeeecCcccCCC
Confidence 44567999999865 45678999999999999999999999999863 46999999999998776654
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.71 E-value=1.8e-05 Score=58.69 Aligned_cols=54 Identities=22% Similarity=0.541 Sum_probs=39.7
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..+...|.||++...++....+.||. ...|..|+.+|+..+ ..|++|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH-----DSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT-----CSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC-----CcCcCcCCccCCc
Confidence 34567899999875433333445754 668999999999643 5899999998765
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.71 E-value=2.5e-05 Score=56.69 Aligned_cols=54 Identities=28% Similarity=0.702 Sum_probs=40.7
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
......|.||++.-.+.....+.||. ...|..|+.+|+..+ ..|++|+.++...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITN-----KKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHC-----SBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcC-----CCCcCcCccccCc
Confidence 45567899999865433455667864 568999999999864 3799999988654
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=4.1e-05 Score=56.24 Aligned_cols=52 Identities=31% Similarity=0.666 Sum_probs=37.5
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
.....|.||++...++....+.|| ....|..|+.+|+..+ ..|++|+.++.-
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C-----~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPC-----KHAFHRKCLIKWLEVR-----KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETT-----TEEEEHHHHHHHHHHC-----SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCC-----CCEecHHHHHHHHHcC-----CcCCCcCccccc
Confidence 345689999987543333333465 3668999999999764 489999998754
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.56 E-value=2.7e-05 Score=53.92 Aligned_cols=53 Identities=23% Similarity=0.578 Sum_probs=38.6
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
.+...|-||++...+.+.....| .| ....|..|+.+|+..+ ..|++|+.++.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~-~C---~H~f~~~Ci~~w~~~~-----~~CP~Cr~~~~v 55 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLP-RC---GHGFHAECVDMWLGSH-----STCPLCRLTVVV 55 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECS-SS---CCEECTTHHHHTTTTC-----CSCSSSCCCSCC
T ss_pred CCCCcCccCCccccCCCceEECC-CC---CCcccHHHHHHHHHcC-----CcCcCCCCEeEC
Confidence 34568999998765444455566 34 3668999999999643 589999988753
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.47 E-value=2e-05 Score=60.92 Aligned_cols=54 Identities=26% Similarity=0.680 Sum_probs=39.8
Q ss_pred cCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
...+...|-||++...+.+.....||. ...|..|+.+|+..+ ..|++|+.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~-----~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS-----GTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT-----CBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC-----CcCcCcCccCCC
Confidence 345667899999765433345557754 679999999999643 489999988753
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=5.1e-05 Score=56.08 Aligned_cols=53 Identities=21% Similarity=0.527 Sum_probs=38.8
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
..+...|.||++...+.+.....||. ...|..|+.+|+..+ ..|++|+.++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN-----RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC-----SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC-----CcCcCcCCcCCC
Confidence 34567899999875433333557764 669999999999764 489999988653
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.30 E-value=0.00013 Score=50.27 Aligned_cols=51 Identities=24% Similarity=0.522 Sum_probs=38.4
Q ss_pred CCCCceeEeccCCCCC-CCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 52 GSLPCCRICLENDGEP-DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~-~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
.+...|.||++...+. ....+.||. ...|..|+.+|+..+ ..|++|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG-----YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT-----CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC-----CcCCCCCCcCC
Confidence 4567899999875332 245667863 678999999999865 58999998763
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.26 E-value=0.00017 Score=57.12 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=40.0
Q ss_pred CCCceeEeccCCCCCC-----------CC-c---ccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 53 SLPCCRICLENDGEPD-----------DE-L---ISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~-----------~~-L---IsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
....|-||++.-.++. ++ . +.||. ...|..||.+|+..........|++|+..|....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3468999997653211 11 1 45664 6799999999996532223579999999998764
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00014 Score=55.20 Aligned_cols=52 Identities=19% Similarity=0.592 Sum_probs=36.9
Q ss_pred CCceeEeccCCCC----------CCC-CcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 54 LPCCRICLENDGE----------PDD-ELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 54 ~~~CRIC~~~e~~----------~~~-~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
...|-||++...+ .++ ....| .| ....|..||.+|+..+ ..|++|+.++..+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C---~H~FH~~Ci~~Wl~~~-----~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWG-EC---NHSFHNCCMSLWVKQN-----NRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TT---SCEEEHHHHHHHTTTC-----CBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeC-CC---CCccChHHHHHHHHhC-----CCCCCcCCCcchh
Confidence 4568888876532 122 33444 45 4779999999999754 4899999998876
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00018 Score=52.30 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=40.2
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..+...|.||++.. .++...||. ...|..|+.+|+.... ....|++|+.++..+
T Consensus 17 ~~~~~~C~IC~~~~---~~~~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDIL---QKPVTIDCG-----HNFCLKCITQIGETSC--GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBC---SSEEECTTC-----CEEEHHHHHHHCSSSC--SCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCccc---CCeEEcCCC-----ChhhHHHHHHHHHcCC--CCCCCCCCCCcCCcc
Confidence 45567999999764 366666663 5689999999997422 357999999987654
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.0003 Score=52.74 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=41.6
Q ss_pred CCCCceeEeccCCCCCCC-CcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 52 GSLPCCRICLENDGEPDD-ELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~-~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
.+...|-||++...+.+. +.+.||. ...|..|+.+|+..+. ....|++|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSI--NGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCS--SCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCC--CCcCCCCCCCcccch
Confidence 445789999987543222 6677763 6789999999998652 357999999998764
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00014 Score=53.30 Aligned_cols=51 Identities=20% Similarity=0.481 Sum_probs=39.2
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..+...|.||++.. .++...||. ...|..|+.+|+..+ ..|++|+.++...
T Consensus 12 ~~~~~~C~IC~~~~---~~~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTC---VHPVSLPCK-----HVFCYLCVKGASWLG-----KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBC---SSEEEETTT-----EEEEHHHHHHCTTCS-----SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCccc---CCCEEccCC-----CHHHHHHHHHHHHCC-----CcCcCcCchhCHh
Confidence 34456899999764 366777764 568999999999643 6999999998754
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.13 E-value=0.00014 Score=52.09 Aligned_cols=51 Identities=20% Similarity=0.458 Sum_probs=36.7
Q ss_pred CCCCceeEeccCCCCC----CCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 52 GSLPCCRICLENDGEP----DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~----~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
.+...|-||++...++ ....+.||. ...|..|+.+|+..+ ..|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHHC-----SSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHcC-----CCCCCCCCccC
Confidence 4467899999764321 111556764 678999999999763 58999998875
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.00044 Score=51.69 Aligned_cols=49 Identities=14% Similarity=0.353 Sum_probs=38.4
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
..+...|.||++.. .++.+.||. ...|..|+.+|+.. ...|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~-----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF---QNPVVTKCR-----HYFCESCALEHFRA-----TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC---CSEEECTTS-----CEEEHHHHHHHHHH-----CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchh---cCeeEccCC-----CHhHHHHHHHHHHC-----CCcCCCcCcccc
Confidence 34467899999764 367788875 55799999999975 358999999986
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.06 E-value=0.00042 Score=51.24 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=38.9
Q ss_pred CCCCCceeEeccCCCCCCCCcccc-cccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 51 NGSLPCCRICLENDGEPDDELISP-CMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsP-C~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
..+...|.||++.. .++...| |. ...|+.|+.+|+..++ ...|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~---~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIM---TDAVVIPCCG-----NSYCDECIRTALLESD---EHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCC---TTCEECSSSC-----CEECTTHHHHHHHHSS---SSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHH---hCCeEcCCCC-----CHHHHHHHHHHHHhcC---CCcCCCCCCcCC
Confidence 34467899999764 3677777 53 6689999999998652 469999999754
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.97 E-value=0.0011 Score=48.84 Aligned_cols=55 Identities=20% Similarity=0.418 Sum_probs=40.9
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhc-CCCcccccccCceeeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKE-GFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~-~~~~~~CElCk~~Y~~~ 114 (312)
.+...|.||++.. .++.+.||. ...|..|+.+|+..+. ......|++|+.++...
T Consensus 17 ~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL---KEPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC---SSCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhh---CcceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4457899999764 366677754 5689999999998742 11357999999998754
No 19
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00095 Score=47.43 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=34.9
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCccccccc
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTC 107 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElC 107 (312)
..+...|.||++.. .++.+.||. ...|+.|+.+|+..++ ....|++|
T Consensus 17 ~~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDIL---QKPVTIDCG-----HNFCLKCITQIGETSC--GFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBC---SSCEECTTS-----SEECHHHHHHHHHHCS--SCCCCSCC
T ss_pred CccCCCCCcCCchh---CCeEEeCCC-----CcchHHHHHHHHHcCC--CCCcCcCC
Confidence 44567899999764 367777763 5689999999998632 35689987
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.0014 Score=48.35 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=41.1
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhc-CCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKE-GFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~-~~~~~~CElCk~~Y~~~ 114 (312)
..+...|.||++.. .++...||. ...|..|+.+|+..+. ......|++|+.++...
T Consensus 16 ~~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELL---TQPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCC---SSCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCccc---CCceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 34467899999865 356667764 5689999999998731 12357999999998754
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.00084 Score=49.17 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=37.7
Q ss_pred CCCCceeEeccCCCCCCCCcc-cccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 52 GSLPCCRICLENDGEPDDELI-SPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LI-sPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
.+...|.||++... ++.. .||. ...|..|+.+|+..+ ..|++|+.++..+
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLI---DATTITECL-----HTFCKSCIVRHFYYS-----NRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCS---SCEECSSSC-----CEECHHHHHHHHHHC-----SSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHH---CcCEECCCC-----CHHHHHHHHHHHHcC-----CcCCCcCcccCcc
Confidence 34568999997642 4554 3764 557999999999753 5899999998765
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.68 E-value=0.0016 Score=46.76 Aligned_cols=51 Identities=25% Similarity=0.645 Sum_probs=38.2
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
+...|.||++... +.....||. ...|..|+.+|+..+ ..|++|+.++....
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCL-----HAFCYVCITRWIRQN-----PTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTT-----EEESTTHHHHHHHHS-----CSTTTTCCCCCCEE
T ss_pred CCCCCeeCCcccc--CCcEecCCC-----CeeHHHHHHHHHhCc-----CcCcCCChhhHhhh
Confidence 4568999998653 223677864 558999999999754 58999999987543
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.00035 Score=50.66 Aligned_cols=50 Identities=28% Similarity=0.695 Sum_probs=38.3
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..+...|.||++... + .+.||. ...|..|+.+|+.. ...|++|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~---~-~~~~Cg-----H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRA---D-LILPCA-----HSFCQKCIDKWSDR-----HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCC---S-EEETTT-----EEECHHHHHHSSCC-----CSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCcc---C-cccCCC-----CcccHHHHHHHHHC-----cCcCCCcCCcccCC
Confidence 344678999998653 3 778874 55899999999873 46999999887643
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=47.04 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=37.7
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
..+...|.||++.. .++...||. ...|..|+.+|+.. ....|++|+.++..
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL---CSPKQTECG-----HRFCESCMAALLSS----SSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEE---SSCCCCSSS-----CCCCHHHHHHHHTT----SSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHh---cCeeECCCC-----CHHHHHHHHHHHHh----CcCCCCCCCcCCCh
Confidence 34567899999764 356666654 55799999999962 24689999998754
No 25
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.40 E-value=0.00056 Score=49.33 Aligned_cols=54 Identities=19% Similarity=0.432 Sum_probs=38.4
Q ss_pred CCCCCceeEeccCCCCC----CCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEP----DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~----~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..+...|-||++...++ ......||. ...|..|+.+|+..+ ..|++|+.++..+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC-----CCCCCCCCccChh
Confidence 34467899999754221 122556764 568999999999754 4899999988754
No 26
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.38 E-value=0.0021 Score=51.85 Aligned_cols=52 Identities=15% Similarity=0.493 Sum_probs=36.9
Q ss_pred CCCceeEeccCCCCC-------------CC-C-cccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 53 SLPCCRICLENDGEP-------------DD-E-LISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~-------------~~-~-LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
+.+.|-||++...+. ++ + ...| | ....|..|+.+|+..+ ..|++|+.+|.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~--C---~H~FH~~Ci~~Wl~~~-----~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV--C---NHAFHFHCISRWLKTR-----QVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET--T---SCEEEHHHHHHHHTTC-----SBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc--c---CcEECHHHHHHHHHcC-----CcCcCCCCcceee
Confidence 467899999764321 11 1 2244 4 3789999999999753 5899999998775
No 27
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.32 E-value=0.0031 Score=43.55 Aligned_cols=47 Identities=26% Similarity=0.538 Sum_probs=33.8
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCccccccc
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTC 107 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElC 107 (312)
..+...|.||++... ++.+.||. ...|..|+.+|+...+ ....|++|
T Consensus 12 ~~~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK---EPVIIECG-----HNFCKACITRWWEDLE--RDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCS---SCCCCSSC-----CCCCHHHHHHHTTSSC--CSCCCSCC
T ss_pred cccCCCCccCCcccC---ccEeCCCC-----CccCHHHHHHHHHhcC--CCCCCCCC
Confidence 344678999997653 56667764 5589999999986422 34689887
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.26 E-value=0.00061 Score=47.92 Aligned_cols=52 Identities=19% Similarity=0.482 Sum_probs=37.2
Q ss_pred CCCceeEeccCCCCC----CCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 53 SLPCCRICLENDGEP----DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~----~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
+...|-||++...++ ......||. ...|..|+.+|+..+ ..|++|+.++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHHC-----SBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHcC-----CCCCCCCccCCcc
Confidence 456899999754321 122456664 668999999999863 5999999987653
No 29
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.05 E-value=0.0049 Score=46.92 Aligned_cols=56 Identities=25% Similarity=0.503 Sum_probs=42.7
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
.+...|-||++.- +..+..+.||.| -.-.++.|+.++... ....|++|+.+|..+.
T Consensus 9 ~~~~~CpICle~~-~~~d~~~~p~~C---GH~fC~~Cl~~~~~~----~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPL-EIDDINFFPCTC---GYQICRFCWHRIRTD----ENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBC-CTTTTTCCSSTT---SCCCCHHHHHHHTTS----SCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccC-ccccccccccCC---CCCcCHHHHHHHHhc----CCCCCCCCCCccCCCc
Confidence 3456899999854 335677889999 466899999988753 2469999999998653
No 30
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.04 E-value=0.0045 Score=47.30 Aligned_cols=53 Identities=15% Similarity=0.389 Sum_probs=37.6
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
..+.|-||++.-. ++. .-+ .| ..-.|..|+.+|+..+. ...|++|+.++..+.
T Consensus 14 ~i~~C~IC~~~i~-~g~--~C~-~C---~h~fH~~Ci~kWl~~~~---~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLI-QGQ--SCE-TC---GIRMHLPCVAKYFQSNA---EPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCS-SSE--ECS-SS---CCEECHHHHHHHSTTCS---SCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcc-cCC--ccC-CC---CchhhHHHHHHHHHhcC---CCCCCCCcCcCCCCC
Confidence 3568999997653 221 111 45 45689999999997652 369999999988764
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.90 E-value=0.0016 Score=53.69 Aligned_cols=54 Identities=15% Similarity=0.468 Sum_probs=1.0
Q ss_pred CCCceeEeccCCCCC-------------CCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 53 SLPCCRICLENDGEP-------------DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~-------------~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
+.+.|-||++.-.+. ++..+..-.| ....|..|+.+|+..+ ..|++|+.+|.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C---~H~FH~~CI~~Wl~~~-----~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC---NHAFHFHCISRWLKTR-----QVCPLDNREWEFQ 113 (117)
T ss_dssp CC-------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCc---CceEcHHHHHHHHHcC-----CcCCCCCCeeeee
Confidence 457899999765321 1112222244 3779999999999864 5899999998765
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=95.66 E-value=0.0069 Score=45.92 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=39.1
Q ss_pred CCCCCceeEeccCCCCCCCCcccc-cccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 51 NGSLPCCRICLENDGEPDDELISP-CMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsP-C~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
..+.-.|-||++.- .+|...| |. ...++.|+.+|+..++ ...|++|+.++.
T Consensus 10 ~~~~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~---~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIM---TDAVVIPCCG-----NSYCDECIRTALLESD---EHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEEC---SSCEECTTTC-----CEECHHHHHHHHHHCT---TCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhh---cCceECCCCC-----CHHHHHHHHHHHHhcC---CCcCcCCCCcCC
Confidence 34567999999764 3777788 53 5678999999998653 369999999873
No 33
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.18 E-value=0.011 Score=46.11 Aligned_cols=51 Identities=25% Similarity=0.515 Sum_probs=38.6
Q ss_pred CCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 54 ~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
...|.||++.. .++...||. ...|..|+.+|+..+. ....|++|+.++...
T Consensus 21 ~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELI---KEPVSTKCD-----HIFCKFCMLKLLNQKK--GPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCC---SSCCBCTTS-----CCCCSHHHHHHHHSSS--SSCCCTTTSCCCCTT
T ss_pred CCCCcccChhh---cCeEECCCC-----CHHHHHHHHHHHHhCC--CCCCCcCCCCcCCHh
Confidence 45899999764 366777764 6679999999998643 246899999987643
No 34
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.16 E-value=0.0084 Score=44.09 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=39.7
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..+.-.|-||++.- .+|.+.||. ...++.|+.+|+... ...|++|+.++...
T Consensus 5 ~~~~~~C~IC~~~~---~~Pv~~~Cg-----H~fc~~Ci~~~~~~~----~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELM---KDPVIVSTG-----QTYERSSIQKWLDAG----HKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCC---SSEEEETTT-----EEEEHHHHHHHHTTT----CCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccc---cCCEEcCCC-----CeecHHHHHHHHHHC----cCCCCCCcCCCChh
Confidence 34567899999754 467777754 668999999999642 46899999987653
No 35
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.07 E-value=0.023 Score=55.44 Aligned_cols=59 Identities=25% Similarity=0.621 Sum_probs=41.1
Q ss_pred CCCCceeEeccCCCCCCCCc-ccccc---cCCCCcccchhhHHHHHHhhcC------CCcccccccCceeeee
Q 021423 52 GSLPCCRICLENDGEPDDEL-ISPCM---CKGTQQFVHRACLDHWRSVKEG------FAFSHCTTCKAQFHLR 114 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~L-IsPC~---CkGS~kyVH~~CL~~Wl~~s~~------~~~~~CElCk~~Y~~~ 114 (312)
.....|-||++...+ ++.+ ...|. | .+..|..||.+|+.+..+ .-+..|+.|+.+...+
T Consensus 306 e~~~ECaICys~~l~-~g~lPdk~C~n~~C---~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLD-GGEVPLVSCDNAKC---VLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCT-TCCCCCBCCSCTTC---CCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecC-CCCCccccccCCcc---CCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456789999987543 2332 34564 6 478999999999986432 1236899999987654
No 36
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=94.97 E-value=0.0055 Score=50.42 Aligned_cols=47 Identities=21% Similarity=0.535 Sum_probs=36.8
Q ss_pred CceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 55 PCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 55 ~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
-.|.||++.. .++.+.||. ...|..|+.+|+..+ ..|++|+.++...
T Consensus 54 ~~C~iC~~~~---~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYF---IEAVTLNCA-----HSFCSYCINEWMKRK-----IECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBC---SSEEEETTS-----CEEEHHHHHHHTTTC-----SBCTTTCCBCCCE
T ss_pred CCCcccCccc---CCceECCCC-----CCccHHHHHHHHHcC-----CcCCCCCCcCCCC
Confidence 4799999764 367788864 678999999998643 5899999987543
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.89 E-value=0.0032 Score=48.63 Aligned_cols=48 Identities=27% Similarity=0.517 Sum_probs=36.5
Q ss_pred CCCceeEeccCCCCCCCCccc-ccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 53 SLPCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIs-PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
+...|.||++... ++... ||. ...|..|+.+|+..+ ..|++|+.++..
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN---IAMIIPQCS-----HNYCSLCIRKFLSYK-----TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTC-----CEEEHHHHHHHHTTC-----CBCTTTCCBCCG
T ss_pred CCCCcccCChhhC---CcCEECCCC-----CHhhHHHHHHHHHCC-----CCCCCCCCcCCh
Confidence 3568999997642 55544 664 668999999999743 599999998765
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.82 E-value=0.0075 Score=43.03 Aligned_cols=53 Identities=15% Similarity=0.372 Sum_probs=36.4
Q ss_pred CCCceeEecc-CCCCCCCC-cccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 53 SLPCCRICLE-NDGEPDDE-LISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 53 ~~~~CRIC~~-~e~~~~~~-LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
+...|-||++ ...++... .+.||. ...|..|+.+|+..+ ...|++|+.++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVRG----AGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHTT----SSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHcC----CCcCCCCCCccccc
Confidence 4568999997 32211111 356765 568999999998643 36899999998643
No 39
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.79 E-value=0.0049 Score=45.18 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=40.3
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhc--CCCcccccccCceeeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKE--GFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~--~~~~~~CElCk~~Y~~~ 114 (312)
.+...|.||++.. .++...||. ...|..|+.+|+..+. ......|++|+.++...
T Consensus 10 ~~~~~C~IC~~~~---~~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELL---TEPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEEC---SSCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCccc---CCeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4467899999864 356666753 5679999999997631 12357999999998764
No 40
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=94.77 E-value=0.024 Score=55.55 Aligned_cols=51 Identities=29% Similarity=0.727 Sum_probs=40.1
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
....|.||++.. .++.+.||.- ..|..|+.+|+... ...|++|+.++....
T Consensus 331 ~~~~C~ICle~~---~~pv~lpCGH-----~FC~~Ci~~wl~~~----~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAEND---KDVKIEPCGH-----LMCTSCLTSWQESE----GQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSB---CCEEEETTCC-----EECHHHHHHHHHHT----CSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCC---CCeEEeCCCC-----hhhHHHHHHHHhcC----CCCCCCCCCccCCce
Confidence 347999999764 4788899864 34999999999742 368999999988764
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.62 E-value=0.012 Score=46.00 Aligned_cols=52 Identities=25% Similarity=0.675 Sum_probs=39.9
Q ss_pred CCCCCceeEeccCCCCCCCCcc-cccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELI-SPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LI-sPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
-.+.-.|-||++.. .++.. .||. ...|..|+.+|+..+. ..|++|+.++...
T Consensus 19 l~~~~~C~IC~~~~---~~p~~~~~Cg-----H~FC~~Ci~~~~~~~~----~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 19 IAEVFRCFICMEKL---RDARLCPHCS-----KLCCFSCIRRWLTEQR----AQCPHCRAPLQLR 71 (100)
T ss_dssp HHHHTBCTTTCSBC---SSEEECTTTC-----CEEEHHHHHHHHHHTC----SBCTTTCCBCCGG
T ss_pred CCCCCCCccCCccc---cCccccCCCC-----ChhhHHHHHHHHHHCc----CCCCCCCCcCCHH
Confidence 34567899999764 35666 7764 5679999999998752 5999999998653
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=94.21 E-value=0.01 Score=50.01 Aligned_cols=49 Identities=20% Similarity=0.436 Sum_probs=36.5
Q ss_pred CCCceeEeccCCCCCCCCccc-ccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 53 SLPCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIs-PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
+...|-||++... ++... ||. ...|..|+.+|+... ...|++|+.++..
T Consensus 53 ~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLK---NTMTTKECL-----HRFCADCIITALRSG----NKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCS---SEEEETTTC-----CEEEHHHHHHHHHTT----CCBCTTTCCBCCS
T ss_pred CCCCCcccChHhh---CcCEeCCCC-----ChhHHHHHHHHHHhC----cCCCCCCCCcCCC
Confidence 3458999997642 45544 654 678999999999853 3689999998753
No 43
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.19 E-value=0.017 Score=46.42 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=37.9
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
+.-.|.||++.- .+|...||. ...|+.|+.+|+..+ ...|++|+.++..
T Consensus 51 ~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELV---FRPITTVCQ-----HNVCKDCLDRSFRAQ----VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBC---SSEEECTTS-----CEEEHHHHHHHHHTT----CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHH---cCcEEeeCC-----CcccHHHHHHHHhHC----cCCCCCCCccCCC
Confidence 346899999764 367777764 557999999999842 3599999999865
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=93.33 E-value=0.028 Score=47.30 Aligned_cols=49 Identities=18% Similarity=0.408 Sum_probs=38.2
Q ss_pred CCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 54 ~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
...|.||++.. .+|.+.||. ...+..|+.+|+... ...|++|+.++...
T Consensus 78 ~~~C~IC~~~~---~~pv~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV---YQPVTTECF-----HNVCKDCLQRSFKAQ----VFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC---SSEEECTTS-----CEEEHHHHHHHHHTT----CCBCTTTCCBCCTT
T ss_pred CCEeecCChhh---cCCEEcCCC-----CchhHHHHHHHHHhC----CCcCCCCCccCCCC
Confidence 45899999764 477777774 557899999999753 35899999998754
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=93.29 E-value=0.013 Score=46.37 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=38.0
Q ss_pred CCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 54 ~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
...|.||++.. .+|...||. ...|..|+.+|+..+ ...|++|+.++...
T Consensus 23 ~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHIL---ADPVETSCK-----HLFCRICILRCLKVM----GSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHT----CSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHh---cCcEEcCCC-----CcccHHHHHHHHhHC----cCcCCCCCCCCCHh
Confidence 56899999764 367777764 567999999999864 25899999997653
No 46
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.29 E-value=0.01 Score=44.00 Aligned_cols=47 Identities=17% Similarity=0.595 Sum_probs=34.2
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcc-cchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQF-VHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~ky-VH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
.+...|.||++.. .++.+.||. .. ....|+.+ ...|++|+.++....
T Consensus 23 ~~~~~C~IC~~~~---~~~~~~pCg-----H~~~C~~C~~~---------~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 23 QEEKLCKICMDRN---IAIVFVPCG-----HLVTCKQCAEA---------VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHHSCSSSCSSC---CCBCCSSSC-----CCCBCHHHHHH---------CSBCTTTCCBCCCCC
T ss_pred CCCCCCCcCCCCC---CCEEEecCC-----CHHHHHHHhhC---------CCCCccCCceecCcE
Confidence 4456899999764 477888985 33 67889842 258999999987643
No 47
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=93.14 E-value=0.0043 Score=46.08 Aligned_cols=48 Identities=17% Similarity=0.572 Sum_probs=37.0
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcc-cchhhHHHHHHhhcCCCcccccccCceeeeeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQF-VHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVE 116 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~ky-VH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~ 116 (312)
.+...|.||++.. .++...||. .. ....|+.+| ..|++|+.++.-..+
T Consensus 22 ~~~~~C~iC~~~~---~~~~~~pCg-----H~~~C~~C~~~~---------~~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 22 QEEKLCKICMDRN---IAIVFVPCG-----HLVTCKQCAEAV---------DKCPMCYTVITFKQK 70 (74)
T ss_dssp HHHTBCTTTSSSB---CCEEEETTC-----CBCCCHHHHTTC---------SBCTTTCCBCSEEEE
T ss_pred ccCCCCCCCCCCC---CCEEEcCCC-----ChhHHHHhhhcC---------ccCCCcCcCccCcEE
Confidence 3456899999764 477888985 44 788999888 489999999876543
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=93.11 E-value=0.013 Score=46.36 Aligned_cols=53 Identities=19% Similarity=0.446 Sum_probs=38.1
Q ss_pred CCCCceeEeccCCCCC----CCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 52 GSLPCCRICLENDGEP----DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~----~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
.+...|-||++...++ ......||. ...|..|+.+|+..+ ..|++|+.++..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC-----SBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC-----CCCCCCCCcCccc
Confidence 3457899999764321 122566764 678999999999753 4999999988754
No 49
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=93.00 E-value=0.024 Score=44.36 Aligned_cols=49 Identities=18% Similarity=0.417 Sum_probs=37.5
Q ss_pred CCCceeEeccCCCCCCCCccc-ccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 53 SLPCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIs-PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
+...|.||++.. .++... ||. ...|..|+.+|+..+ ..|++|+.++...
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYF---IDATTIIECL-----HSFCKTCIVRYLETS-----KYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBC---SSEEEETTTC-----CEEEHHHHHHHHTSC-----SBCTTTCCBSCSS
T ss_pred CcCCCccCChHH---hCcCEeCCCC-----ChhhHHHHHHHHHhC-----CcCcCCCcccccc
Confidence 456899999764 356664 775 567999999999753 6999999987653
No 50
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.97 E-value=0.12 Score=38.02 Aligned_cols=52 Identities=17% Similarity=0.478 Sum_probs=37.5
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeeecc
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELF 118 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~~~ 118 (312)
..+...|.||++.. .+..+.||.= ..+-..|+.+ ...|++|+.++....+.+
T Consensus 12 ~~~~~~C~IC~~~~---~~~v~~pCgH----~~~C~~C~~~---------~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 12 EENSKDCVVCQNGT---VNWVLLPCRH----TCLCDGCVKY---------FQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCCSSCCSSSSSSC---CCCEETTTTB----CCSCTTHHHH---------CSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCCcCcCC---CCEEEECCCC----hhhhHHHHhc---------CCCCCCCCcchhceEEee
Confidence 34567899999864 4788899973 2256678762 259999999988766544
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=92.76 E-value=0.0075 Score=47.75 Aligned_cols=48 Identities=19% Similarity=0.404 Sum_probs=37.5
Q ss_pred CCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 54 ~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
.-.|.||++.. .++...||. ...|..|+.+|+... ...|++|+.++..
T Consensus 15 ~~~C~iC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEIL---VEPVTLPCN-----HTLCKPCFQSTVEKA----SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBC---SSCEECTTS-----CEECHHHHCCCCCTT----TSBCTTTCCBCHH
T ss_pred CCCCccCCccc---CceeEcCCC-----CHHhHHHHHHHHhHC----cCCCCCCCcccCc
Confidence 46899999764 367777764 568999999999642 3689999999875
No 52
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=92.71 E-value=0.058 Score=42.98 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=38.0
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
.+.-.|.||++.. .++...||. ...+..|+.+|+..+. ..|++|+.++..
T Consensus 16 ~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMAL---REAVQTPCG-----HRFCKACIIKSIRDAG----HKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCcCChhh---cCeEECCcC-----ChhhHHHHHHHHhhCC----CCCCCCCCCcCH
Confidence 3456899999764 366777753 6689999999998753 389999988754
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=91.67 E-value=0.056 Score=38.96 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=36.8
Q ss_pred CCCCceeEeccCCCCCCCCccc--ccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeee
Q 021423 52 GSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVE 116 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIs--PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~ 116 (312)
.....|.||++.. .+..+- ||.= ..+-..|..+|...+ ..|++|+.++.-..+
T Consensus 5 ~~~~~C~IC~~~~---~~~~~~~~pCgH----~~~C~~C~~~~~~~~-----~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 5 NLLKPCSLCEKRP---RDGNIIHGRTGH----LVTCFHCARRLKKAG-----ASCPICKKEIQLVIK 59 (63)
T ss_dssp GGGSBCTTTSSSB---SCEEEEETTEEE----EEECHHHHHHHHHTT-----CBCTTTCCBCCEEEE
T ss_pred CcCCCCcccCCcC---CCeEEEecCCCC----HhHHHHHHHHHHHhC-----CcCCCcCchhhceEE
Confidence 3456899999764 244444 8851 225679999998642 589999999875543
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=91.53 E-value=0.034 Score=46.41 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=38.1
Q ss_pred cCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
...+.-.|-||++.- .+|...||. ...++.|+.+|+..+ ...|++|+.+...
T Consensus 27 ~l~~~~~C~IC~~~~---~~pv~~~Cg-----H~FC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVL---RRPFQAQCG-----HRYCSFCLASILSSG----PQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHGGGS----CEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhh---cCcEECCCC-----CccCHHHHHHHHhcC----CCCCCCCCCcccc
Confidence 345567899999764 366666654 557899999999643 3589999997644
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=91.14 E-value=0.043 Score=43.27 Aligned_cols=54 Identities=19% Similarity=0.500 Sum_probs=37.6
Q ss_pred CCCCCceeEeccCCCCC--CCC--cccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEP--DDE--LISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~--~~~--LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
+.+...|-||++...+. .+. ...||. ...|..|+.+|+..+ ..|++|+.++..+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC-----SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC-----CCCCCCCCcCChh
Confidence 44567899999754221 112 344543 679999999999754 5999999988654
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=90.59 E-value=0.19 Score=39.41 Aligned_cols=53 Identities=9% Similarity=-0.037 Sum_probs=39.8
Q ss_pred cCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
...+.-.|-||++-- .+|.+.||. -...-+.|+.+|+.. ...|++|+.++...
T Consensus 18 ~~p~~~~CpI~~~~m---~dPV~~~cG----~htf~r~cI~~~l~~-----~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 18 DACDEFLDPIMSTLM---CDPVVLPSS----RVTVDRSTIARHLLS-----DQTDPFNRSPLTMD 70 (98)
T ss_dssp SCCTTTBCTTTCSBC---SSEEECTTT----CCEEEHHHHHHHTTT-----SCBCTTTCSBCCTT
T ss_pred cCcHhcCCcCccccc---cCCeECCCC----CeEECHHHHHHHHHh-----CCCCCCCCCCCChh
Confidence 345677999999754 488888865 134568999999974 24899999987643
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=89.59 E-value=0.14 Score=36.97 Aligned_cols=52 Identities=15% Similarity=0.361 Sum_probs=35.9
Q ss_pred CCCceeEeccCCCCCCCCccc--ccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeee
Q 021423 53 SLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVE 116 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIs--PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~ 116 (312)
+...|.||++.. .+..+. ||.= ...=..|+.+|...+ ..|++|+.++.-..+
T Consensus 7 ~~~~C~IC~~~~---~~~~~~~~pCgH----~~~C~~C~~~~~~~~-----~~CPiCR~~i~~~i~ 60 (64)
T 2vje_A 7 AIEPCVICQGRP---KNGCIVHGKTGH----LMACFTCAKKLKKRN-----KPCPVCRQPIQMIVL 60 (64)
T ss_dssp GGSCCTTTSSSC---SCEEEEETTEEE----EEECHHHHHHHHHTT-----CCCTTTCCCCCEEEE
T ss_pred CcCCCCcCCCCC---CCEEEECCCCCC----hhhHHHHHHHHHHcC-----CcCCCcCcchhceEe
Confidence 345899999864 355555 8751 123478999998642 589999999875543
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.22 E-value=0.088 Score=41.85 Aligned_cols=47 Identities=15% Similarity=0.379 Sum_probs=36.2
Q ss_pred CCCCceeEeccCCCCCCCCccc-ccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 52 GSLPCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIs-PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
.+.-.|.||++.. .+|... ||. ...++.|+.+|+. ..|++|+.++..
T Consensus 20 ~~~~~C~IC~~~~---~~pv~~~~Cg-----H~fC~~Ci~~~~~-------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNIL---REPVCLGGCE-----HIFCSNCVSDCIG-------TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCC---SSCBCCCSSS-----CCBCTTTGGGGTT-------TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHh---hCccEeCCCC-----CHHHHHHHHHHhc-------CCCcCCCCcCcc
Confidence 3467899999764 366666 764 6678999999985 489999999743
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=87.90 E-value=0.33 Score=36.85 Aligned_cols=51 Identities=6% Similarity=-0.158 Sum_probs=39.2
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..+.-.|-||++-- .+|.+.||. ...-+.|+.+|+... ..|++|+.++...
T Consensus 11 ~p~~~~CpI~~~~m---~dPV~~~cG-----htf~r~~I~~~l~~~-----~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLM---TDPVRLPSG-----TVMDRSIILRHLLNS-----PTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHC-----SBCTTTCCBCCGG
T ss_pred CchheECcccCchh---cCCeECCCC-----CEECHHHHHHHHhcC-----CCCCCCcCCCChH
Confidence 45577999999754 488999963 346689999999842 5899999987653
No 60
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=86.39 E-value=0.35 Score=38.05 Aligned_cols=52 Identities=6% Similarity=-0.154 Sum_probs=39.9
Q ss_pred ccCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 49 IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 49 ~~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
....+.-.|-||++-- .+|.+.||. ...-+.|+.+|+.. ...|++|+.++..
T Consensus 24 ~~~p~~~~CpI~~~~m---~dPV~~~cG-----htf~r~~I~~~l~~-----~~~cP~~~~~l~~ 75 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLM---TDPVRLPSG-----TIMDRSIILRHLLN-----SPTDPFNRQTLTE 75 (100)
T ss_dssp SSCSTTTBCTTTCSBC---SSEEEETTT-----EEEEHHHHHHHTTS-----CSBCSSSCCBCCT
T ss_pred ccCcHhhCCcCccCcc---cCCeECCCC-----CEEchHHHHHHHHc-----CCCCCCCCCCCCh
Confidence 3455677999999754 489999963 44679999999973 2589999998765
No 61
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.05 E-value=0.22 Score=34.73 Aligned_cols=47 Identities=21% Similarity=0.508 Sum_probs=34.5
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
.+...|.||++.. .++.+.||. ...+..|+.+| ...|++|+.++.+.
T Consensus 4 ~~~~~C~IC~~~~---~~p~~l~Cg-----H~fC~~Ci~~~--------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEA---KCPKLLPCL-----HTLCSGCLEAS--------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSC---BCCSCSTTS-----CCSBTTTCSSS--------SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCcc---CCeEEcCCC-----CcccHHHHccC--------CCCCCcCCcEeecC
Confidence 3456799999764 367778864 44678898773 35899999988764
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.93 E-value=0.42 Score=42.05 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=38.4
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
..+.-.|-||++-- .+|.+.||. ...-+.|+.+|+..++ ..|++|+.++..
T Consensus 205 ~~~~~~c~i~~~~~---~dPv~~~~g-----h~f~~~~i~~~~~~~~----~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELM---REPCITPSG-----ITYDRKDIEEHLQRVG----HFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBC---SSEEECSSC-----CEEETTHHHHHHHHTC----SSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHh---cCCeECCCC-----CEECHHHHHHHHHHCC----CCCcCCCCCCch
Confidence 34566899999764 489999973 3455899999998642 249999998864
No 63
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.60 E-value=1.5 Score=34.61 Aligned_cols=56 Identities=21% Similarity=0.474 Sum_probs=34.9
Q ss_pred cccccCCCCCceeEeccCCCCCCCCccc--ccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 46 DEDIENGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 46 d~~~~~~~~~~CRIC~~~e~~~~~~LIs--PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
+.+.+..+...| ||.+.. .+.+|. =|.|+ ..|.|..|+. +... ...++.|+.|...
T Consensus 28 ~~~~d~~e~~yC-iC~~~~---~g~MI~CD~~dC~--~~WfH~~CVg--l~~~-p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 28 DMPVDPNEPTYC-LCHQVS---YGEMIGCDNPDCS--IEWFHFACVG--LTTK-PRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCCSCCCBCS-TTCCBC---CSCCCCCSCSSCS--CCCCCSTTTT--CSSC-CCSSCCCTTTCCC
T ss_pred cCCcCCCCCcEE-ECCCCC---CCCEeEecCCCCC--CCCEecccCC--cCcC-CCCCEECcCccCc
Confidence 334445566778 998754 245664 22352 2799999987 4332 2357899999653
No 64
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=84.40 E-value=0.43 Score=43.35 Aligned_cols=53 Identities=19% Similarity=0.480 Sum_probs=38.0
Q ss_pred CCCCceeEeccCCCCCCCCcccccc-cCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCM-CKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~-CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~ 115 (312)
+..+.|-||++--. .+ .-|. | ..-.|..|+.+|+..+ ....|+.|+.++....
T Consensus 178 ~~i~~C~iC~~iv~-~g----~~C~~C---~~~~H~~C~~~~~~~~---~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 178 DAVKICNICHSLLI-QG----QSCETC---GIRMHLPCVAKYFQSN---AEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TTCCBCTTTCSBCS-SC----EECSSS---CCEECHHHHHHHTTTC---SSCBCTTTCCBCCSCC
T ss_pred CCCCcCcchhhHHh-CC----cccCcc---ChHHHHHHHHHHHHhC---CCCCCCCCCCCCCCCC
Confidence 34789999997542 11 2232 5 4678999999999754 2469999999987763
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=83.38 E-value=0.16 Score=48.58 Aligned_cols=49 Identities=18% Similarity=0.542 Sum_probs=37.8
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVE 116 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~ 116 (312)
.+...|.||++.. .++...||.= ......|+.+| ..|++|+.++.-..+
T Consensus 293 ~~~~~C~IC~~~~---~~~v~lpCgH----~~fC~~C~~~~---------~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 293 QEERTCKVCMDKE---VSVVFIPCGH----LVVCQECAPSL---------RKCPICRGIIKGTVR 341 (345)
T ss_dssp HTTCBCTTTSSSB---CCEEEETTCC----EEECTTTGGGC---------SBCTTTCCBCCEEEE
T ss_pred cCCCCCCccCCcC---CceEEcCCCC----hhHhHHHHhcC---------CcCCCCCCCccCeEE
Confidence 4568999999764 4788889863 23788999887 389999999876654
No 66
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=80.85 E-value=0.63 Score=38.93 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=37.5
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
..+.-.|-||++.- .+|...||. ....+.|+.+|+..+. ..|++|+.++..
T Consensus 15 ~~~~~~C~IC~~~~---~~pv~~~Cg-----H~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMAL---REAVQTPCG-----HRFCKACIIKSIRDAG----HKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhh---cCcEECCCC-----CHHHHHHHHHHHHhCC----CCCCCCccCcch
Confidence 34456899999764 366666543 5578999999998653 399999887654
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=80.75 E-value=0.081 Score=39.92 Aligned_cols=51 Identities=16% Similarity=0.502 Sum_probs=36.3
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeeeeeccc
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELFE 119 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~~~~~~ 119 (312)
+...|.||++.. .++.+.||.= ...=..|+.+| ..|++|+.++....+.+.
T Consensus 17 ~~~~C~IC~~~~---~~~v~~pCgH----~~~C~~C~~~~---------~~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 17 EAMLCMVCCEEE---INSTFCPCGH----TVCCESCAAQL---------QSCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HHTBCTTTSSSB---CCEEEETTCB----CCBCHHHHTTC---------SBCTTTCCBCCEEEECBC
T ss_pred CCCEeEEeCccc---CcEEEECCCC----HHHHHHHHHhc---------CcCCCCCchhhCeEEEEe
Confidence 356899999764 4778889862 12345687655 399999999988765543
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.45 E-value=0.87 Score=34.59 Aligned_cols=55 Identities=24% Similarity=0.533 Sum_probs=37.2
Q ss_pred CCCCceeEeccCCCCCCCCcc--cccccCCCCcccchhhHHHHHHhh--cC-CCcccccc--cCceeee
Q 021423 52 GSLPCCRICLENDGEPDDELI--SPCMCKGTQQFVHRACLDHWRSVK--EG-FAFSHCTT--CKAQFHL 113 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LI--sPC~CkGS~kyVH~~CL~~Wl~~s--~~-~~~~~CEl--Ck~~Y~~ 113 (312)
.+.-.|-||++... ....+ .||. ...-+.||.+++..+ .+ .....|+. |+..+.+
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~ 64 (94)
T 1wim_A 3 SGSSGCKLCLGEYP--VEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHL 64 (94)
T ss_dssp CSBCCCSSSCCCCB--GGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEE
T ss_pred CCCcCCcccCcccc--cccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCCcc
Confidence 34568999997642 23333 3675 557789999999864 22 23579999 9988543
No 69
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=78.89 E-value=2.1 Score=34.22 Aligned_cols=55 Identities=25% Similarity=0.554 Sum_probs=39.4
Q ss_pred CCCCCceeEeccCCC-CCCCCcccccc-cCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 51 NGSLPCCRICLENDG-EPDDELISPCM-CKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~-~~~~~LIsPC~-CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
.....+|.||-++-+ +.++++.--|+ | .--|=+.|++.=++.- +..|.+||++|.
T Consensus 13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC---~FPvCrpCyEYErkeG----~q~CpqCktrYk 69 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTVEGDLFVACNEC---GFPACRPCYEYERREG----TQNCPQCKTRYK 69 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSS---CCCCCHHHHHHHHHTS----CSSCTTTCCCCC
T ss_pred ccCCCccccccCccccCCCCCEEEeeecc---CChhhHHHHHHHHhcc----CccccccCCccc
Confidence 345689999997654 23455555554 4 3458899998877653 579999999997
No 70
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.62 E-value=1.5 Score=33.60 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=37.5
Q ss_pred CCCCCceeEeccCCCCCCCCcccc-cccCCCCcccchhhHHHHHHhhc-CCCcccccc--cCce
Q 021423 51 NGSLPCCRICLENDGEPDDELISP-CMCKGTQQFVHRACLDHWRSVKE-GFAFSHCTT--CKAQ 110 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsP-C~CkGS~kyVH~~CL~~Wl~~s~-~~~~~~CEl--Ck~~ 110 (312)
..+.-.|-||++-- .+|.+.| |. .-.-+.|+.+|+.... ......|++ |..+
T Consensus 4 ~~~~~~CPI~~~~~---~dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEM---KKPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBC---SSEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchh---cCCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 44567899999754 4788886 64 4456899999998652 123568999 9866
No 71
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=76.84 E-value=0.79 Score=33.95 Aligned_cols=53 Identities=13% Similarity=0.310 Sum_probs=35.9
Q ss_pred ccCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 49 IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 49 ~~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
..+.....|.||.++ +.++. |.+=-+..|..||.-.+.... ...+.|..|...
T Consensus 7 ~~~~~~~~C~vC~~~-----~~ll~---Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~ 59 (66)
T 2lri_C 7 QNLAPGARCGVCGDG-----TDVLR---CTHCAAAFHWRCHFPAGTSRP-GTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTCCCTTTSCC-----TTCEE---CSSSCCEECHHHHCTTTCCCC-SSSCCCTTTTTC
T ss_pred cCCCCCCCcCCCCCC-----CeEEE---CCCCCCceecccCCCccCcCC-CCCEECccccCC
Confidence 344556779999854 33553 444479999999976665432 246899999754
No 72
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=74.93 E-value=2.4 Score=31.68 Aligned_cols=54 Identities=20% Similarity=0.475 Sum_probs=34.0
Q ss_pred cccCCCCCceeEeccCCCCCCCCccc--ccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 48 DIENGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 48 ~~~~~~~~~CRIC~~~e~~~~~~LIs--PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
+.+..+...| ||.+.. .+.+|. =|.|. ..+.|..|+. +... ......|+.|...
T Consensus 10 ~~d~~~~~~C-~C~~~~---~g~MI~CD~~~C~--~~wfH~~Cvg--l~~~-p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 10 PVDPNEPTYC-LCHQVS---YGEMIGCDNPDCS--IEWFHFACVG--LTTK-PRGKWFCPRCSQE 65 (71)
T ss_dssp CCCTTSCCCS-TTCCCS---CSSEECCSCSSCS--CCCEETTTTT--CSSC-CSSCCCCTTTSSC
T ss_pred ccCCCCCCEE-ECCCCC---CCCEeEeeCCCCC--CccEecccCC--cCcC-CCCCEECCCCCcc
Confidence 3345566788 898753 245664 12242 2799999997 4332 2357899999654
No 73
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=65.62 E-value=2.5 Score=36.99 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=39.1
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
..+.-.|-||++-- .+|.+.||. ...=+.|+.+|+...+ ..|++|+.++...
T Consensus 103 ip~~f~CPI~~elm---~DPV~~~~G-----htfer~~I~~~l~~~~----~tcP~t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELM---REPCITPSG-----ITYDRKDIEEHLQRVG----HFDPVTRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHTC----SBCTTTCCBCCGG
T ss_pred CcHhhcccCccccC---CCCeECCCC-----CEECHHHHHHHHHhCC----CCCCCCcCCCChh
Confidence 45567899999754 489999863 4456899999998642 2699999988653
No 74
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=63.96 E-value=4.1 Score=30.43 Aligned_cols=54 Identities=17% Similarity=0.337 Sum_probs=35.3
Q ss_pred cCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCc
Q 021423 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~ 109 (312)
...+...|.||.++++++++.++. |++=.+.+|+.||.-=. .....+.|+.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPY---IPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEE---CSSSCCEEEHHHHTCSS---CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEE---CCCCCCccccccCCCCc---CCCCCcCCccCcC
Confidence 345567899999876445566664 33446789999985211 1124678988864
No 75
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=62.47 E-value=4.5 Score=31.27 Aligned_cols=53 Identities=17% Similarity=0.380 Sum_probs=34.3
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
.+...|.||.++++++++.++. |.+=.+.+|..|+.-=. .....+.|+.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPY---IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEE---CSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEE---CCCCCchhhcccCCCCc---cCCCceECccccCc
Confidence 4457899999875444556664 33446789999985211 11246899999654
No 76
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.28 E-value=2.1 Score=33.04 Aligned_cols=59 Identities=15% Similarity=0.313 Sum_probs=39.3
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHh---hcCCCcccccccCceeeee
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSV---KEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~---s~~~~~~~CElCk~~Y~~~ 114 (312)
....|.+|.....++++.++-==.| -+..|+.||.==+.. +.....+.|..|.......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C---~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQEC---HNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSS---CCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCCCCceEECCCC---CCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 4678999998764445777764445 688899998643321 1122468999997766543
No 77
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=54.07 E-value=5.2 Score=28.65 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=35.7
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhh--cCCCcccccccCce
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVK--EGFAFSHCTTCKAQ 110 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s--~~~~~~~CElCk~~ 110 (312)
+++...|.+|..+..+.++.++. |.+=-+..|+.||.-=+... .....+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999999875444466654 33446889999986422110 01245788888654
No 78
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=48.35 E-value=30 Score=24.02 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=6.8
Q ss_pred HHhhhhccchhc
Q 021423 267 IWQKHYHILTKK 278 (312)
Q Consensus 267 i~~r~y~~l~k~ 278 (312)
+|-|+=|+-+||
T Consensus 33 ~~~RRR~~~~kK 44 (44)
T 2jwa_A 33 ILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHCSCCCC
T ss_pred hheehhhhhccC
Confidence 555666665553
No 79
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=46.64 E-value=7.9 Score=30.32 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=31.9
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
+...| ||.... +++.+|.==.| .++.|..|+.- ....-.+...|+.|+.+
T Consensus 27 d~vrC-iC~~~~--~~~~mi~Cd~C---~~w~H~~C~~~--~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTH--DDGYMICCDKC---SVWQHIDCMGI--DRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCS--CSSCEEEBTTT---CBEEETTTTTC--CTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCcc--CCCcEEEcCCC---CCcCcCcCCCC--CccCCCCCEECCCCcCC
Confidence 34457 787653 34678865556 69999999842 11112246899999743
No 80
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=45.61 E-value=32 Score=23.85 Aligned_cols=22 Identities=23% Similarity=0.609 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021423 238 FALVIVFVVIFAILGIAYGFLA 259 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~~~~~ 259 (312)
.|.+||-++++.|+|+..++++
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhe
Confidence 3444555677788888777764
No 81
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=45.47 E-value=2.3 Score=42.50 Aligned_cols=55 Identities=16% Similarity=0.447 Sum_probs=35.0
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
+...| ||.... ++++.+|.--.| ..|.|-.|+.-=-......+...|+.|.....
T Consensus 36 ~~~yC-~C~~~~-d~~~~MIqCd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 36 PPVYC-VCRQPY-DVNRFMIECDIC---KDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCEET-TTTEEC-CTTSCEEEBTTT---CCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCeEE-eCCCcC-CCCCCeEEccCC---CCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 34445 888653 345778887778 49999999842111111125689999986544
No 82
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.66 E-value=13 Score=34.67 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=37.0
Q ss_pred CCCCCceeEeccCCCCCCCCccc-ccccCCCCcccchhhHHHHHHhhcCCCcccccc--cCceeeee
Q 021423 51 NGSLPCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTT--CKAQFHLR 114 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIs-PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CEl--Ck~~Y~~~ 114 (312)
....-.|-||++-- .+|..+ .|. .-.=+.|+.+|+..+ ....|++ |+.++..+
T Consensus 178 ~~~el~CPIcl~~f---~DPVts~~CG-----HsFcR~cI~~~~~~~---~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPY---EAPLISRKCN-----HVFDRDGIQNYLQGY---TTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBC---SSEEEESSSC-----CEEEHHHHHHHSTTC---SCEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcc---cCCeeeCCCC-----CcccHHHHHHHHHhC---CCCCCCcccccCcCchh
Confidence 34456899999754 366654 554 335578999999753 2478999 99987654
No 83
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=43.11 E-value=3.3 Score=29.81 Aligned_cols=51 Identities=22% Similarity=0.483 Sum_probs=30.1
Q ss_pred cCCCCCceeEeccCCCCCCCCccc--ccccCCCCcccchhhHHHHHHhhcCCCcccccccCc
Q 021423 50 ENGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~~~~~LIs--PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~ 109 (312)
+..+...| ||.+.. ++.+|. =|.|+ ..+.|..|+. +.... .....|+.|..
T Consensus 6 d~~e~~~C-~C~~~~---~g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p-~g~w~C~~C~~ 58 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVS---YGEMIGCDNPDCS--IEWFHFACVG--LTTKP-RGKWFCPRCSQ 58 (60)
T ss_dssp ---CCEET-TTTEEC---CSEEEECSCTTCS--SCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCCCCEE-ECCCcC---CCCEEEeCCCCCC--CceEehhcCC--CCcCC-CCCEECcCccC
Confidence 34556677 898753 245664 22242 2799999997 44322 25688888854
No 84
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=42.66 E-value=6.5 Score=30.87 Aligned_cols=52 Identities=17% Similarity=0.368 Sum_probs=31.5
Q ss_pred ccCCCCCceeEeccCCCCCCCCccc--ccccCCCCcccchhhHHHHHHhhcCCCcccccc-cCc
Q 021423 49 IENGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTT-CKA 109 (312)
Q Consensus 49 ~~~~~~~~CRIC~~~e~~~~~~LIs--PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CEl-Ck~ 109 (312)
.+..+...| ||.+... +++|. =|.|. ..|.|..|+. +... ....+.|+. |..
T Consensus 21 ~~~~~~~yC-iC~~~~~---g~MI~CD~c~C~--~eWfH~~CVg--l~~~-p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSY---GPMVACDNPACP--FEWFHYGCVG--LKQA-PKGKWYCSKDCKE 75 (90)
T ss_dssp ---CCSCCS-TTTCCCS---SSEECCCSSSCS--CSCEETTTSS--CSSC-TTSCCCSSHHHHH
T ss_pred CCCCCCcEE-EeCCCCC---CCEEEecCCCCc--cccCcCccCC--CCcC-CCCCccCChhhcc
Confidence 334556778 9987532 45664 33343 3899999986 3322 225789999 873
No 85
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=39.73 E-value=20 Score=29.86 Aligned_cols=51 Identities=22% Similarity=0.422 Sum_probs=34.2
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHH------HhhcCCCcccccccCc
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWR------SVKEGFAFSHCTTCKA 109 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl------~~s~~~~~~~CElCk~ 109 (312)
.+....||+|.++ ++|+ -|++-.+-.|.+||..=+ +.....+.+.|..|.-
T Consensus 54 Dg~~~~C~vC~dG-----G~Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG-----GNLI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC-----SEEE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC-----CeeE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4556789999976 3455 234557999999998642 2211235789999943
No 86
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=36.76 E-value=29 Score=27.49 Aligned_cols=35 Identities=26% Similarity=0.575 Sum_probs=26.2
Q ss_pred CCCCCceeEeccCCCCCCCCcccccc-cCCCCcccchhhHHHH
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCM-CKGTQQFVHRACLDHW 92 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~-CkGS~kyVH~~CL~~W 92 (312)
....+.|-||..-. ..-+.||+ | .|-.|..||.+=
T Consensus 12 ~~~D~~C~VC~~~t----~~~l~pCRvC---~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWT----AESLFPCRVC---TRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCC----SSCCSSCSSS---SSCCCHHHHHHH
T ss_pred CCCCcccCcccccc----ccceeccccc---cccccHhhcccc
Confidence 34567999998543 44567887 6 689999999874
No 87
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=35.10 E-value=9.4 Score=27.33 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=33.1
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
..+...|.+|.+. +.++. |.+=.+..|..||.-=+... ....+.|..|..+
T Consensus 8 ~~~~~~C~vC~~~-----g~ll~---CD~C~~~fH~~Cl~p~l~~~-p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG-----GEIIL---CDTCPRAYHMVCLDPDMEKA-PEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC-----SSEEE---CSSSSCEEEHHHHCTTCCSC-CCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC-----CcEEE---CCCCChhhhhhccCCCCCCC-CCCceECcccccc
Confidence 4456789999864 33443 44557899999986433222 2246899999653
No 88
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=32.51 E-value=19 Score=25.61 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=33.3
Q ss_pred CceeEeccCCCCCCCCccc-ccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeeee
Q 021423 55 PCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (312)
Q Consensus 55 ~~CRIC~~~e~~~~~~LIs-PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~~ 114 (312)
-.|.|+++-- .+|.+. |+. .-.=+.|+++|+... ..|++.+.+...+
T Consensus 4 ~~CpIs~~~m---~dPV~~~~sG-----~~yer~~I~~~l~~~-----~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVP---RRPVLSPKSR-----TIFEKSLLEQYVKDT-----GNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCC---SSEEEETTTT-----EEEEHHHHHHHHHHH-----SBCTTTCCBCCGG
T ss_pred EEecCCCCCC---CCCEEeCCCC-----cEEcHHHHHHHHHhC-----CCCcCCcCCCChh
Confidence 4688888654 377777 432 446688999999864 2599999887644
No 89
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=32.17 E-value=17 Score=24.19 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021423 238 FALVIVFVVIFAILGIAYGFLA 259 (312)
Q Consensus 238 ~~~~~~~~~~~~i~g~~~~~~~ 259 (312)
.|..||-+++|.|+|+..|+++
T Consensus 10 IaagVvglll~vii~l~~~~~i 31 (35)
T 1iij_A 10 IIATVVGVLLFLILVVVVGILI 31 (35)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHH
T ss_pred eHHHHHHHHHHHHHHHHhheEE
Confidence 3455555777777777776653
No 90
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=32.08 E-value=1e+02 Score=29.06 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCc
Q 021423 243 VFVVIFAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGS 292 (312)
Q Consensus 243 ~~~~~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~ 292 (312)
+++++++++|+++-.++...+..++-+. + +|..+++.+||--.+|.
T Consensus 125 ~~~~~~~l~G~~~~a~~ig~i~~~~~~~-~---~r~~fs~~~VI~~~~g~ 170 (333)
T 1p7b_A 125 AIATLEIFVGMSGIALSTGLVFARFARP-R---AKIMFARHAIVRPFNGR 170 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSC-C---CCCEECSCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHhCCCEEEcCCCCc
Confidence 4445566666655444444555555431 1 22345666666666553
No 91
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=31.42 E-value=6.6 Score=28.50 Aligned_cols=51 Identities=20% Similarity=0.474 Sum_probs=30.2
Q ss_pred cCCCCCceeEeccCCCCCCCCccc--ccccCCCCcccchhhHHHHHHhhcCCCcccccccCc
Q 021423 50 ENGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (312)
Q Consensus 50 ~~~~~~~CRIC~~~e~~~~~~LIs--PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~ 109 (312)
++.+...| ||.+.. .+.+|. =|.|+ ..+.|..|+. +... ......|+.|..
T Consensus 7 d~~e~~yC-~C~~~~---~g~MI~CD~c~C~--~~WfH~~Cvg--l~~~-p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVS---YGEMIGCDNEQCP--IEWFHFSCVS--LTYK-PKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEEC---CSEEEECSCTTCS--SCEEETGGGT--CSSC-CSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCC---CCCeeeeeCCCCC--cccEecccCC--cCcC-CCCCEECcCccc
Confidence 34556677 898753 245664 23352 3899999987 3332 235688888854
No 92
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=30.78 E-value=43 Score=23.22 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021423 241 VIVFVVIFAILGIAYGFL 258 (312)
Q Consensus 241 ~~~~~~~~~i~g~~~~~~ 258 (312)
+|-.+++.++.|+.|+++
T Consensus 26 IVGaLvil~VAGLiysm~ 43 (46)
T 1pfi_A 26 IVGALVILAVAGLIYSML 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456678889999875
No 93
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=30.12 E-value=21 Score=28.66 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=23.8
Q ss_pred cccCCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHH
Q 021423 48 DIENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLD 90 (312)
Q Consensus 48 ~~~~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~ 90 (312)
+....+...|.+|.++ ++| --|..++-.+..|..||.
T Consensus 9 ~~~~~~~~~C~~C~~~-----G~l-l~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG-----GEL-VMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp -CCCSSCSSCTTTCCC-----SEE-EECCSTTCCCEECTGGGT
T ss_pred CCcCCCCCCCCcCCCC-----CcE-eEECCCCCCcccccccCc
Confidence 3344566789999843 334 346522446899999997
No 94
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=29.70 E-value=7.9 Score=32.51 Aligned_cols=55 Identities=22% Similarity=0.434 Sum_probs=35.3
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
..+...| +|.... ++++.+|.=-.| .+|.|..|+.-=-......+...|+.|+..
T Consensus 5 ~~~~~~C-~C~~~~-~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPE-DESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEEC-CTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCC-CCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcch
Confidence 3456678 998764 335667876667 599999998422222122357899999764
No 95
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=29.70 E-value=31 Score=21.50 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhh
Q 021423 259 AATMAIQKIWQKHY 272 (312)
Q Consensus 259 ~~~~~~~ri~~r~y 272 (312)
.|-+++||-|.+|.
T Consensus 7 ~aA~vIQrA~R~yl 20 (27)
T 2kxw_B 7 VSAIVIQRAYRRYL 20 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46788999999985
No 96
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.44 E-value=9 Score=27.24 Aligned_cols=56 Identities=23% Similarity=0.459 Sum_probs=34.9
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
+.+...|.||.... +++..+|.==.| ..|.|..|+.-=.......+...|+.|..+
T Consensus 3 ~~e~~~C~~C~~~~-~~~~~mI~Cd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESY-AADEFWICCDLC---EMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCC-CSSSCEEECSSS---CCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCcc-CCCCCEEEccCC---CCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 34566898998764 234667764455 699999997432211111256788888653
No 97
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.76 E-value=43 Score=25.50 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021423 252 GIAYGFLAATMAIQKIWQ 269 (312)
Q Consensus 252 g~~~~~~~~~~~~~ri~~ 269 (312)
|++-|+++.+++.--||+
T Consensus 16 gvi~gilliGllllliwk 33 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444554
No 98
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=25.51 E-value=9.6 Score=27.28 Aligned_cols=50 Identities=24% Similarity=0.500 Sum_probs=29.6
Q ss_pred CCCCCceeEeccCCCCCCCCccc--ccccCCCCcccchhhHHHHHHhhcCCCcccccccCc
Q 021423 51 NGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIs--PC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~ 109 (312)
+.+...| ||.+.. .+.+|. =|.|+ ..+.|..|+. +.... .....|+.|..
T Consensus 6 ~~e~~yC-~C~~~~---~g~mi~CD~~~C~--~~wfH~~Cvg--l~~~p-~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVS---YGEMIGCDNPDCP--IEWFHFACVD--LTTKP-KGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEEC---CSEEEECSCTTCS--SCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCC---CCCeeEeeCCCCC--CCCEecccCC--cccCC-CCCEECcCccC
Confidence 3445567 898753 245664 22242 2799999997 43322 25688888854
No 99
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.36 E-value=52 Score=24.30 Aligned_cols=56 Identities=21% Similarity=0.482 Sum_probs=36.5
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceeee
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~~ 113 (312)
+...| ||.... +++..+|.==.| ..|.|..|+.-=.......+...|+.|.....-
T Consensus 11 ~~~~C-~C~~~~-d~~~~MIqCd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPY-NVNHFMIECGLC---QDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSC-CSSSCEEEBTTT---CCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCcc-CCCCceEEcCCC---CCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 34566 888754 335678876667 599999998532222222357899999876543
No 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=25.31 E-value=25 Score=25.67 Aligned_cols=55 Identities=16% Similarity=0.404 Sum_probs=34.3
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCcee
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQF 111 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y 111 (312)
..+...|.||.... .++.+|. |.+=.++.|..||.-=.... ......|+.|....
T Consensus 15 ~~~~~~C~~C~~~~--~~~~mi~---CD~C~~wfH~~Cv~~~~~~~-~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPD--DGSPMIG---CDDCDDWYHWPCVGIMAAPP-EEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCC--SSCCEEE---CSSSSSEEEHHHHTCSSCCC-SSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCC--CCCCEEE---cCCCCcccccccCCCCccCC-CCCCEEChhccCch
Confidence 34456799998764 2345665 44446999999985322111 12468999997654
No 101
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=25.18 E-value=2.6e+02 Score=25.70 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhcccccceeeecCCCc
Q 021423 242 IVFVVIFAILGIAYGFLAATMAIQKIWQKHYHILTKKELTKEYVVEDLHGS 292 (312)
Q Consensus 242 ~~~~~~~~i~g~~~~~~~~~~~~~ri~~r~y~~l~k~~ltk~~~v~d~~~~ 292 (312)
-++..+.+++|+++-.++..++..++-+. .+|..+++.+||.-.+|.
T Consensus 110 r~~~~~~~l~G~~~~a~~~g~v~~~~~~~----~~r~~fs~~~vI~~~~g~ 156 (301)
T 1xl4_A 110 NTLVTLEALCGMLGLAVAASLIYARFTRP----TAGVLFSSRMVISDFEGK 156 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCCEEECSCEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HhhhccCCeEEEecCCCc
Confidence 34455566666665545555555555432 233456677777766664
No 102
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=24.65 E-value=9.3 Score=33.29 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=34.5
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCceee
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~Y~ 112 (312)
.....|.+|.+++ .++. |.|--+..|..||.--+.... ...+.|..|...-.
T Consensus 5 ~~~~~C~~C~~~g-----~ll~---Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQNGG-----DLLC---CEKCPKVFHLTCHVPTLLSFP-SGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCCCE-----EEEE---CSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCC-----ceEE---cCCCCCccCCccCCCCCCCCC-CCCEEeCceeCccc
Confidence 3456799998652 3543 556679999999865443221 24689999986543
No 103
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=23.44 E-value=46 Score=21.43 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhh
Q 021423 259 AATMAIQKIWQKHY 272 (312)
Q Consensus 259 ~~~~~~~ri~~r~y 272 (312)
++-+++||-|.+|.
T Consensus 7 ~aA~vIQrA~R~yl 20 (31)
T 2l53_B 7 VSAMVIQRAFRRHL 20 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35678999999985
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.25 E-value=18 Score=26.50 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=33.0
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCc
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~ 109 (312)
+.+...| ||.... .++.+|.==.| ..|.|-.|+.- ......+...|+.|..
T Consensus 16 ~~~~~~C-iC~~~~--~~~~MIqCd~C---~~WfH~~Cvgi--~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPF--AGRPMIECNEC---HTWIHLSCAKI--RKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCC--TTCCEEECTTT---CCEEETTTTTC--CTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcC--CCCCEEECCCC---CccccccccCc--CcccCCCcEECCCCCC
Confidence 4556678 998754 35668876567 59999999742 1111225678888853
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=22.96 E-value=28 Score=27.46 Aligned_cols=36 Identities=33% Similarity=0.698 Sum_probs=25.4
Q ss_pred CCCceeEeccCCCC----CCCCcccccccCCCCcccchhhHHH
Q 021423 53 SLPCCRICLENDGE----PDDELISPCMCKGTQQFVHRACLDH 91 (312)
Q Consensus 53 ~~~~CRIC~~~e~~----~~~~LIsPC~CkGS~kyVH~~CL~~ 91 (312)
..+.|.+|+..+.. ..++|+.==.| -+..|.+||.-
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C---~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADC---GNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTT---CCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhc---CCCCCCchhcC
Confidence 46789999976421 24678854445 68899999953
No 106
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=22.75 E-value=19 Score=28.15 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=26.4
Q ss_pred CCCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHH
Q 021423 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRS 94 (312)
Q Consensus 51 ~~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~ 94 (312)
..+.+.|.||.+..+ .++|+.= ++=-+..|..||.-...
T Consensus 4 ~~~~~~C~~C~~~g~--~~~ll~C---~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGD--LLDQFFC---TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCC--TTTSEEC---SSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCC--CcCCeEC---CCCCCCcChHHhCCccc
Confidence 456779999997642 2455532 33368899999976553
No 107
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=22.59 E-value=1.2e+02 Score=27.74 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 021423 255 YGFLAATMAIQKIWQKHY 272 (312)
Q Consensus 255 ~~~~~~~~~~~ri~~r~y 272 (312)
.+++++..++..++.||.
T Consensus 406 ~~~~~~~~~~~~~~~~~~ 423 (444)
T 3gia_A 406 IATFIGVLIFEIIYRKVT 423 (444)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344555566666666543
No 108
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=22.27 E-value=1.1e+02 Score=20.17 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 021423 250 ILGIAYGFLAA 260 (312)
Q Consensus 250 i~g~~~~~~~~ 260 (312)
++-..-|.|+|
T Consensus 23 vVvVivGaLLm 33 (35)
T 1spf_A 23 VVVVIVGALLM 33 (35)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHc
Confidence 33334445544
No 109
>2k4n_A Protein PF0246; beta-sheet, alpha-helix, mobIle loop, structural genomics, PSI-2, protein structure initiative; NMR {Pyrococcus furiosus}
Probab=21.80 E-value=29 Score=27.89 Aligned_cols=18 Identities=50% Similarity=1.038 Sum_probs=14.9
Q ss_pred cceeeecC---CCccCCCCCC
Q 021423 282 KEYVVEDL---HGSYTPPKLD 299 (312)
Q Consensus 282 k~~~v~d~---~~~~~~~~l~ 299 (312)
|-||+||- .|+|.||.+-
T Consensus 44 ktyviedeivepgsydppemk 64 (111)
T 2k4n_A 44 KTYVIEDEIVEPGEYDPPEMK 64 (111)
T ss_dssp EEEEEEEEECCCCCCSSCTTS
T ss_pred eeeeeeeeecCCCCCCCcccc
Confidence 67999994 4999999874
No 110
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.39 E-value=64 Score=21.58 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=17.8
Q ss_pred CccCCCCCChHHHHHHhhhcC
Q 021423 291 GSYTPPKLDSEHEERLKMLKL 311 (312)
Q Consensus 291 ~~~~~~~l~~~~~~~l~~l~l 311 (312)
|+-+.|..+++.+++|..+|.
T Consensus 1 ~~~~~~~~~~~~v~~L~~MGF 21 (47)
T 2ekk_A 1 GSSGSSGVNQQQLQQLMDMGF 21 (47)
T ss_dssp CCCCCCSSCHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHcCC
Confidence 566788999999999998874
No 111
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=20.18 E-value=17 Score=30.93 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=32.3
Q ss_pred CCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 53 ~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
+.+.|.+|.+++ .++. |.+-.+..|..||.--+.... ...+.|..|+..
T Consensus 3 ~~~~C~~C~~~g-----~ll~---Cd~C~~~~H~~C~~p~l~~~p-~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGG-----ELLC---CEKCPKVFHLSCHVPTLTNFP-SGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCS-----SCEE---CSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCS
T ss_pred CCCccccCCCCC-----eeee---cCCCCcccCccccCCCCCCCC-CCCEECccccCc
Confidence 346799998652 3442 455578999999854443221 246899999865
No 112
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.05 E-value=17 Score=25.96 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=31.2
Q ss_pred CCCCceeEeccCCCCCCCCcccccccCCCCcccchhhHHHHHHhhcCCCcccccccCce
Q 021423 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (312)
Q Consensus 52 ~~~~~CRIC~~~e~~~~~~LIsPC~CkGS~kyVH~~CL~~Wl~~s~~~~~~~CElCk~~ 110 (312)
.+...|.+|.++ +.++. |.+=.+..|..||.-=+... ....+.|..|..+
T Consensus 7 ~~~~~C~vC~~~-----g~ll~---Cd~C~~~fH~~Cl~ppl~~~-p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG-----GELLC---CDTCPSSYHIHCLNPPLPEI-PNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC-----SSCBC---CSSSCCCBCSSSSSSCCSSC-CSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC-----CCEEE---cCCCCHHHcccccCCCcCcC-CCCccCChhhcCc
Confidence 346689999864 23442 44446789999986322222 1246889999653
Done!