BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021424
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 186/324 (57%), Gaps = 18/324 (5%)
Query: 1 MDQIEHKFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDC 60
M +IEHK + V GLN+H+AE G + ++F+HGFPE+WYSWRHQMV +A G+RA+APD
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELG-EGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDL 66
Query: 61 RGYG--LSDPPAEPEKTSFQDMVDDLLAILDHLG--LAKVFLVAKDFGALTAYMFAIQHQ 116
RGYG P +P K S +V D++A+L+ + KVF+VA D+GAL A+ +
Sbjct: 67 RGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRP 126
Query: 117 ERVSGVITLGVPILPPGP----IEFHKYL-PEGFYISRWQEPGRAEADFGRLDAKTVVRN 171
++V ++ L V P +E K + E YISR+Q PG EA+F + AK+V++
Sbjct: 127 DKVKALVNLSVHFSKRNPKMNVVEGLKAIFGEDHYISRFQVPGEIEAEFAPIGAKSVLKK 186
Query: 172 IYILFSRSEIPIA-PENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYR 230
IL R P P+ K + + L W +EE+L Y +E++GF A+ YR
Sbjct: 187 --ILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNY-YR 243
Query: 231 TLRENF--STPEVIA-VKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPE 287
L N+ + P A VKVP I+G+ D PG ++YI +G K VP LE + + E
Sbjct: 244 ALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLE 303
Query: 288 G-SHFVQEQSPEEVNQLILTFLNK 310
G +HFV ++ P E+++ I F+ K
Sbjct: 304 GAAHFVSQERPHEISKHIYDFIQK 327
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 186/324 (57%), Gaps = 18/324 (5%)
Query: 1 MDQIEHKFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDC 60
M +IEHK + V GLN+H+AE G + ++F+HGFPE+WYSWRHQMV +A G+RA+APD
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELG-EGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDL 66
Query: 61 RGYG--LSDPPAEPEKTSFQDMVDDLLAILDHLG--LAKVFLVAKDFGALTAYMFAIQHQ 116
RGYG P +P K S +V D++A+L+ + KVF+VA D+GAL A+ +
Sbjct: 67 RGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRP 126
Query: 117 ERVSGVITLGVPILPPGP----IEFHKYL-PEGFYISRWQEPGRAEADFGRLDAKTVVRN 171
++V ++ L V P +E K + E YISR+Q PG EA+F + AK+V++
Sbjct: 127 DKVKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKK 186
Query: 172 IYILFSRSEIPIA-PENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYR 230
IL R P P+ K + + L W +EE+L Y +E++GF A+ YR
Sbjct: 187 --ILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNY-YR 243
Query: 231 TLRENF--STPEVIA-VKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPE 287
L N+ + P A VKVP I+G+ D PG ++YI +G K VP LE + + E
Sbjct: 244 ALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLE 303
Query: 288 G-SHFVQEQSPEEVNQLILTFLNK 310
G +HFV ++ P E+++ I F+ K
Sbjct: 304 GAAHFVSQERPHEISKHIYDFIQK 327
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 165/319 (51%), Gaps = 25/319 (7%)
Query: 4 IEHKFIKVQ-GLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRG 62
+ H ++ V+ + LH E G+ V HGFPE WYSWR+Q+ +A AG+R +A D +G
Sbjct: 18 MSHGYVTVKPRVRLHFVELGSGP-AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKG 76
Query: 63 YGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGV 122
YG S P E E+ + + +++ LD LGL++ + D+G + + A+ + ERV V
Sbjct: 77 YGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAV 136
Query: 123 ITLGVPILPPG----PIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSR 178
+L P +P P+E K P Y +QEPG AEA+ + + R LF
Sbjct: 137 ASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAEL----EQNLSRTFKSLFRA 192
Query: 179 SEIPIAPENK--EIMDLVSDSTPLPP---WFTEEDLAAYGALYEKSGFRTALQVPYRTLR 233
S+ + +K E L +S P TEE++ Y ++KSGFR L YR +
Sbjct: 193 SDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNW-YRNME 251
Query: 234 ENFS-TPEVIAVK--VPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSH 290
N+ + + K +PAL++ +KD+ L P + ++ +D +P+L+ H+ + H
Sbjct: 252 RNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMSQHM-----EDWIPHLKRGHIEDCGH 305
Query: 291 FVQEQSPEEVNQLILTFLN 309
+ Q P EVNQ+++ +L+
Sbjct: 306 WTQMDKPTEVNQILIKWLD 324
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 165/319 (51%), Gaps = 25/319 (7%)
Query: 4 IEHKFIKVQ-GLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRG 62
+ H ++ V+ + LH E G+ V HGFPE WYSWR+Q+ +A AG+R +A D +G
Sbjct: 33 MSHGYVTVKPRVRLHFVELGSGP-AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKG 91
Query: 63 YGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGV 122
YG S P E E+ + + +++ LD LGL++ + D+G + + A+ + ERV V
Sbjct: 92 YGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAV 151
Query: 123 ITLGVPILPPG----PIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSR 178
+L P +P P+E K P Y +QEPG AEA+ + + R LF
Sbjct: 152 ASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAEL----EQNLSRTFKSLFRA 207
Query: 179 SEIPIAPENK--EIMDLVSDSTPLPP---WFTEEDLAAYGALYEKSGFRTALQVPYRTLR 233
S+ + +K E L +S P TEE++ Y ++KSGFR L YR +
Sbjct: 208 SDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNW-YRNME 266
Query: 234 ENFS-TPEVIAVK--VPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSH 290
N+ + + K +PAL++ +KD+ L P + ++ +D +P+L+ H+ + H
Sbjct: 267 RNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMSQHM-----EDWIPHLKRGHIEDCGH 320
Query: 291 FVQEQSPEEVNQLILTFLN 309
+ Q P EVNQ+++ +L+
Sbjct: 321 WTQMDKPTEVNQILIKWLD 339
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 165/319 (51%), Gaps = 25/319 (7%)
Query: 4 IEHKFIKVQ-GLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRG 62
+ H ++ V+ + LH E G+ V HGFPE WYSWR+Q+ +A AG+R +A D +G
Sbjct: 237 MSHGYVTVKPRVRLHFVELGS-GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKG 295
Query: 63 YGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGV 122
YG S P E E+ + + +++ LD LGL++ + D+G + + A+ + ERV V
Sbjct: 296 YGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAV 355
Query: 123 ITLGVPILPPG----PIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSR 178
+L P +P P+E K P Y +QEPG AEA+ + + R LF
Sbjct: 356 ASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAEL----EQNLSRTFKSLFRA 411
Query: 179 SEIPIAPENK--EIMDLVSDSTPLPP---WFTEEDLAAYGALYEKSGFRTALQVPYRTLR 233
S+ + +K E L +S P TEE++ Y ++KSGFR L YR +
Sbjct: 412 SDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNW-YRNME 470
Query: 234 ENFS-TPEVIAVK--VPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSH 290
N+ + + K +PAL++ +KD+ L P + ++ +D +P+L+ H+ + H
Sbjct: 471 RNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMSQHM-----EDWIPHLKRGHIEDCGH 524
Query: 291 FVQEQSPEEVNQLILTFLN 309
+ Q P EVNQ+++ +L+
Sbjct: 525 WTQMDKPTEVNQILIKWLD 543
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 164/325 (50%), Gaps = 26/325 (8%)
Query: 2 DQIEHKFIKVQ-GLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDC 60
+ + H ++ V+ G+ LH E G+ + HGFPE W+SWR+Q+ +A AGFR +A D
Sbjct: 233 NDVSHGYVTVKPGIRLHFVEMGS-GPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDM 291
Query: 61 RGYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVS 120
+GYG S P E E+ + + + +++ LD LG+ + + D+ + + A+ + ERV
Sbjct: 292 KGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVR 351
Query: 121 GVITLGVPILPP----GPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILF 176
V +L P +PP P++ + +P Y +QEPG AEA+ K + R F
Sbjct: 352 AVASLNTPFMPPDPDVSPMKVIRSIPVFNYQLYFQEPGVAEAEL----EKNMSRTFKSFF 407
Query: 177 SRSE------IPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYR 230
S+ + A E I+ + L TEE++ Y ++K+GFR L YR
Sbjct: 408 RASDETGFIAVHKATEIGGILVNTPEDPNLSKITTEEEIEFYIQQFKKTGFRGPLNW-YR 466
Query: 231 TLRENFS-TPEVIAVK--VPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPE 287
N+ + + + K VPAL++ +KD L+ P + S + +P L+ H+ +
Sbjct: 467 NTERNWKWSCKGLGRKILVPALMVTAEKDIVLR-PEM-----SKNMEKWIPFLKRGHIED 520
Query: 288 GSHFVQEQSPEEVNQLILTFLNKHV 312
H+ Q + P EVNQ+++ +L V
Sbjct: 521 CGHWTQIEKPTEVNQILIKWLQTEV 545
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 159/355 (44%), Gaps = 58/355 (16%)
Query: 6 HKFIKVQGLNLH-IAEAGADAH--VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRG 62
H+ + +G +H +A++ D +VV LHGFPE WYSWRHQ+ +A AG+R +A D RG
Sbjct: 11 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 70
Query: 63 YGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGV 122
YG S + +++V D++ +LD G + F+V D+GA A+ FA H +R +GV
Sbjct: 71 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGV 130
Query: 123 ITLGVPILPPGPIE-----FHKYLPEGFYISRWQEPGRA----------------EADF- 160
+ + VP G I F + P +++ PGR E D
Sbjct: 131 VGISVPFAGRGVIGLPGSPFGERRPSDYHLEL-AGPGRVWYQDYFAVQDGIITEIEEDLR 189
Query: 161 -------------GRLDA-KTVVRNIYILFSRSEIPI-------APENKEIMDLVSDSTP 199
G + A K V L S I + E + D
Sbjct: 190 GWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPET 249
Query: 200 LPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRE--NFSTPEVIAVKVPALLIMGDKDY 257
+P WFTE DL Y +E+SGF L + + + + + + PAL I G D
Sbjct: 250 MPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYDV 309
Query: 258 --FLKFPGIEDYIRSGKAKDLVPNLEIIHL-PEGSHFVQEQSPEEVNQLILTFLN 309
IE +A +++PN H+ + H++Q+++PEE N+L+L FL
Sbjct: 310 GTIWGAQAIE------RAHEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDFLG 358
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 159/355 (44%), Gaps = 58/355 (16%)
Query: 6 HKFIKVQGLNLH-IAEAGADAH--VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRG 62
H+ + +G +H +A++ D +VV LHGFPE WYSWRHQ+ +A AG+R +A D RG
Sbjct: 5 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 64
Query: 63 YGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGV 122
YG S + +++V D++ +LD G + F+V D+GA A+ FA H +R +GV
Sbjct: 65 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGV 124
Query: 123 ITLGVPILPPGPIE-----FHKYLPEGFYISRWQEPGRA----------------EADF- 160
+ + VP G I F + P +++ PGR E D
Sbjct: 125 VGISVPFAGRGVIGLPGSPFGERRPSDYHLEL-AGPGRVWYQDYFAVQDGIITEIEEDLR 183
Query: 161 -------------GRLDA-KTVVRNIYILFSRSEIPI-------APENKEIMDLVSDSTP 199
G + A K V L S I + E + D
Sbjct: 184 GWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPET 243
Query: 200 LPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRE--NFSTPEVIAVKVPALLIMGDKDY 257
+P WFTE DL Y +E+SGF L + + + + + + PAL I G D
Sbjct: 244 MPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYDV 303
Query: 258 --FLKFPGIEDYIRSGKAKDLVPNLEIIHL-PEGSHFVQEQSPEEVNQLILTFLN 309
IE +A +++PN H+ + H++Q+++PEE N+L+L FL
Sbjct: 304 GTIWGAQAIE------RAHEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDFLG 352
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 135/313 (43%), Gaps = 41/313 (13%)
Query: 7 KFIKVQGLNL-HIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGL 65
K++++ G + +I E DA +VF HG P Y WR+ M + G R +A D G G
Sbjct: 11 KYLEIAGKRMAYIDEGKGDA--IVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGA 67
Query: 66 SD--PPAEPEKTSFQDMVDDLLAILDHLGLAK-VFLVAKDFGALTAYMFAIQHQERVSGV 122
SD P+ P++ S+ + D L A+ D L L V LV D+G+ + +A QH++RV G+
Sbjct: 68 SDKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHRDRVQGI 127
Query: 123 ITLGVPILPPGPIEFHKYLP--EGFYISRWQEPGRAEADFGRLDAKTVVRNIY---ILFS 177
+ + P+ + + P G + G A L+ V + IL
Sbjct: 128 AFMEAIVT---PMTWADWPPAVRGVFQGFRSPQGEPMA----LEHNIFVERVLPGAILRQ 180
Query: 178 RSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFS 237
S+ + + ++ D P W +L G E AL YR+ E
Sbjct: 181 LSDEEMNHYRRPFVNGGEDRRPTLSW--PRNLPIDGEPAEV----VALVNEYRSWLEETD 234
Query: 238 TPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSP 297
P++ P +I G I DY+RS PN I +P G HFVQE SP
Sbjct: 235 MPKLFINAEPGAIITGR---------IRDYVRS------WPNQTEITVP-GVHFVQEDSP 278
Query: 298 EEVNQLILTFLNK 310
EE+ I F+ +
Sbjct: 279 EEIGAAIAQFVRR 291
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 135/313 (43%), Gaps = 41/313 (13%)
Query: 7 KFIKVQGLNL-HIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGL 65
K++++ G + +I E DA +VF HG P Y WR+ M + G R +A D G G
Sbjct: 13 KYLEIAGKRMAYIDEGKGDA--IVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGA 69
Query: 66 SD--PPAEPEKTSFQDMVDDLLAILDHLGLAK-VFLVAKDFGALTAYMFAIQHQERVSGV 122
SD P+ P++ S+ + D L A+ D L L V LV D+G+ + +A QH++RV G+
Sbjct: 70 SDKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHRDRVQGI 129
Query: 123 ITLGVPILPPGPIEFHKYLP--EGFYISRWQEPGRAEADFGRLDAKTVVRNIY---ILFS 177
+ + P+ + + P G + G A L+ V + IL
Sbjct: 130 AFMEAIVT---PMTWADWPPAVRGVFQGFRSPQGEPMA----LEHNIFVERVLPGAILRQ 182
Query: 178 RSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFS 237
S+ + + ++ D P W +L G E AL YR+ E
Sbjct: 183 LSDEEMNHYRRPFVNGGEDRRPTLSW--PRNLPIDGEPAEV----VALVNEYRSWLEETD 236
Query: 238 TPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSP 297
P++ P +I G I DY+RS PN I +P G HFVQE SP
Sbjct: 237 MPKLFINAEPGAIITGR---------IRDYVRS------WPNQTEITVP-GVHFVQEDSP 280
Query: 298 EEVNQLILTFLNK 310
EE+ I F+ +
Sbjct: 281 EEIGAAIAQFVRR 293
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 146/328 (44%), Gaps = 67/328 (20%)
Query: 5 EHKFIKVQGLNL-HIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGY 63
E KFI+++G + +I E D ++F HG P Y WR+ M A G R IA D G
Sbjct: 9 EKKFIEIKGRRMAYIDEGTGDP--ILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGM 65
Query: 64 GLSDP--PAEPEKTSFQDMVDDLLAILDHLGLA-KVFLVAKDFGALTAYMFAIQHQERVS 120
G SD P+ PE+ ++ + D L A+ + L L +V LV D+G+ + +A +H+ERV
Sbjct: 66 GDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQ 125
Query: 121 GVITLGVPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILF-SRS 179
G+ + + PIE+ ADF D R+++ F S++
Sbjct: 126 GIAYMEAIAM---PIEW--------------------ADFPEQD-----RDLFQAFRSQA 157
Query: 180 EIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTP 239
+ ++ ++ V L P +E ++AAY + +G R S P
Sbjct: 158 GEELVLQDNVFVEQVLPGLILRP-LSEAEMAAYREPFLAAG---------EARRPTLSWP 207
Query: 240 EVIAVK-VPALLIMGDKDY------------FLKF-PGIEDYIRSGKAKDLV---PNLEI 282
I + PA ++ +DY F+ PG + +G+ +D PN
Sbjct: 208 RQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGA---LTTGRMRDFCRTWPNQTE 264
Query: 283 IHLPEGSHFVQEQSPEEVNQLILTFLNK 310
I + G+HF+QE SP+E+ I F+ +
Sbjct: 265 ITV-AGAHFIQEDSPDEIGAAIAAFVRR 291
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 146/328 (44%), Gaps = 67/328 (20%)
Query: 5 EHKFIKVQGLNL-HIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGY 63
E KFI+++G + +I E D ++F HG P Y WR+ M A G R IA D G
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDP--ILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGM 66
Query: 64 GLSDP--PAEPEKTSFQDMVDDLLAILDHLGLA-KVFLVAKDFGALTAYMFAIQHQERVS 120
G SD P+ PE+ ++ + D L A+ + L L +V LV D+G+ + +A +H+ERV
Sbjct: 67 GDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQ 126
Query: 121 GVITLGVPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILF-SRS 179
G+ + + PIE+ ADF D R+++ F S++
Sbjct: 127 GIAYMEAIAM---PIEW--------------------ADFPEQD-----RDLFQAFRSQA 158
Query: 180 EIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTP 239
+ ++ ++ V L P +E ++AAY + +G R S P
Sbjct: 159 GEELVLQDNVFVEQVLPGLILRP-LSEAEMAAYREPFLAAG---------EARRPTLSWP 208
Query: 240 EVIAVK-VPALLIMGDKDY------------FLKF-PGIEDYIRSGKAKDLV---PNLEI 282
I + PA ++ +DY F+ PG + +G+ +D PN
Sbjct: 209 RQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGA---LTTGRMRDFCRTWPNQTE 265
Query: 283 IHLPEGSHFVQEQSPEEVNQLILTFLNK 310
I + G+HF+QE SP+E+ I F+ +
Sbjct: 266 ITV-AGAHFIQEDSPDEIGAAIAAFVRR 292
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 146/328 (44%), Gaps = 67/328 (20%)
Query: 5 EHKFIKVQGLNL-HIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGY 63
E KFI+++G + +I E D ++F HG P Y WR+ M A G R IA D G
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDP--ILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGM 66
Query: 64 GLSDP--PAEPEKTSFQDMVDDLLAILDHLGLA-KVFLVAKDFGALTAYMFAIQHQERVS 120
G SD P+ PE+ ++ + D L A+ + L L +V LV D+G+ + +A +H+ERV
Sbjct: 67 GDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQ 126
Query: 121 GVITLGVPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILF-SRS 179
G+ + + PIE+ ADF D R+++ F S++
Sbjct: 127 GIAYMEAIAM---PIEW--------------------ADFPEQD-----RDLFQAFRSQA 158
Query: 180 EIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTP 239
+ ++ ++ V L P +E ++AAY + +G R S P
Sbjct: 159 GEELVLQDNVFVEQVLPGLILRP-LSEAEMAAYREPFLAAG---------EARRPTLSWP 208
Query: 240 EVIAVK-VPALLIMGDKDY------------FLKF-PGIEDYIRSGKAKDLV---PNLEI 282
I + PA ++ +DY F+ PG + +G+ +D PN
Sbjct: 209 RQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGA---LTTGRMRDFCRTWPNQTE 265
Query: 283 IHLPEGSHFVQEQSPEEVNQLILTFLNK 310
I + G+HF+QE SP+E+ I F+ +
Sbjct: 266 ITV-AGAHFIQEDSPDEIGAAIAAFVRR 292
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 146/328 (44%), Gaps = 67/328 (20%)
Query: 5 EHKFIKVQGLNL-HIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGY 63
E KFI+++G + +I E D ++F HG P Y WR+ M A G R IA D G
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDP--ILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGM 66
Query: 64 GLSDP--PAEPEKTSFQDMVDDLLAILDHLGLA-KVFLVAKDFGALTAYMFAIQHQERVS 120
G SD P+ PE+ ++ + D L A+ + L L +V LV D+G+ + +A +H+ERV
Sbjct: 67 GDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQ 126
Query: 121 GVITLGVPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILF-SRS 179
G+ + + PIE+ ADF D R+++ F S++
Sbjct: 127 GIAYMEAIAM---PIEW--------------------ADFPEQD-----RDLFQAFRSQA 158
Query: 180 EIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTP 239
+ ++ ++ V L P +E ++AAY + +G R S P
Sbjct: 159 GEELVLQDNVFVEQVLPGLILRP-LSEAEMAAYREPFLAAG---------EARRPTLSWP 208
Query: 240 EVIAVK-VPALLIMGDKDY------------FLKF-PGIEDYIRSGKAKDLV---PNLEI 282
I + PA ++ +DY F+ PG + +G+ +D PN
Sbjct: 209 RQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGA---LTTGRMRDFCRTWPNQTE 265
Query: 283 IHLPEGSHFVQEQSPEEVNQLILTFLNK 310
I + G+HF+QE SP+E+ I F+ +
Sbjct: 266 ITV-AGAHFIQEDSPDEIGAAIAAFVXR 292
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 134/308 (43%), Gaps = 38/308 (12%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ LGL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGR---LDAKTVVRNI---YILFSRSE 180
P E+ ++ E F R AD GR +D + Y++ +E
Sbjct: 131 FIRPFPTWDEWPEFARETFQAFR-------TADVGRELIIDQNAFIEGALPKYVVRPLTE 183
Query: 181 IPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPE 240
+ + + + V D PL W +L G E + ++ L ++
Sbjct: 184 VEMDHYREPFLKPV-DREPL--WRFPNELPIAG---EPANIVALVEAYMNWLHQS----- 232
Query: 241 VIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEV 300
VP LL G + + P E + + + +PN + + + G HF+QE +P+ +
Sbjct: 233 ----PVPKLLFWGTPGFII--PPAE----AARLAESLPNCKTVDIGPGLHFLQEDNPDLI 282
Query: 301 NQLILTFL 308
I +L
Sbjct: 283 GSEIARWL 290
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 134/308 (43%), Gaps = 38/308 (12%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 11 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 69
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ LGL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 70 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 127
Query: 127 VPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGR---LDAKTVVRNI---YILFSRSE 180
P E+ ++ E F R AD GR +D + Y++ +E
Sbjct: 128 FIRPFPTWDEWPEFARETFQAFR-------TADVGRELIIDQNAFIEGALPKYVVRPLTE 180
Query: 181 IPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPE 240
+ + + + V D PL W +L G E + ++ L ++
Sbjct: 181 VEMDHYREPFLKPV-DREPL--WRFPNELPIAG---EPANIVALVEAYMNWLHQS----- 229
Query: 241 VIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEV 300
VP LL G + + P E + + + +PN + + + G HF+QE +P+ +
Sbjct: 230 ----PVPKLLFWGTPGFII--PPAE----AARLAESLPNCKTVDIGPGLHFLQEDNPDLI 279
Query: 301 NQLILTFL 308
I +L
Sbjct: 280 GSEIARWL 287
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 136/319 (42%), Gaps = 48/319 (15%)
Query: 7 KFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+ ++V+G + + G+ V+FLHG P Y WR+ + V AG+RA+APD G G S
Sbjct: 12 RTVEVEGATIAYVDEGS-GQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDS 70
Query: 67 DPPAEPE-KTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITL 125
A+P+ + QD V +D LGL LV D+G++ A + +RV+ V
Sbjct: 71 ---AKPDIEYRLQDHVAYXDGFIDALGLDDXVLVIHDWGSVIGXRHARLNPDRVAAV-AF 126
Query: 126 GVPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDA--KTVVRNIYILFSRSEIPI 183
++PP LP Y + + G D D K V+ + + + I
Sbjct: 127 XEALVPPA-------LPXPSYEAXGPQLGPLFRDLRTADVGEKXVLDGNFFVET-----I 174
Query: 184 APENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFR-TALQVPYRTL---RENFSTP 239
PE + L +E + AAY A + R LQ P F+
Sbjct: 175 LPEXGVVRSL-----------SEAEXAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEA 223
Query: 240 EVI-------AVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFV 292
EV+ A +P LL + P + DY+ + VPNLE+ + G+HF+
Sbjct: 224 EVLKNGEWLXASPIPKLLFHAEPGALAPKP-VVDYL-----SENVPNLEVRFVGAGTHFL 277
Query: 293 QEQSPEEVNQLILTFLNKH 311
QE P + Q I +L ++
Sbjct: 278 QEDHPHLIGQGIADWLRRN 296
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 132/308 (42%), Gaps = 38/308 (12%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ LGL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGR---LDAKTVVRNI---YILFSRSE 180
P E+ ++ E F R AD GR +D + Y++ +E
Sbjct: 131 FIRPIPTWDEWPEFARETFQAFR-------TADVGRELIIDQNAFIEGALPKYVVRPLTE 183
Query: 181 IPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPE 240
+ + + + V D PL W +L G + AL Y P+
Sbjct: 184 VEMDHYREPFLKPV-DREPL--WRFPNELPIAG----EPANIVALVEAYMNWLHQSPVPK 236
Query: 241 VIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEV 300
++ P +LI P E + + + +PN + + + G H++QE +P+ +
Sbjct: 237 LLFWGTPGVLI----------PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNPDLI 282
Query: 301 NQLILTFL 308
I +L
Sbjct: 283 GSEIARWL 290
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 131/309 (42%), Gaps = 40/309 (12%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ LGL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRSEIPIAPE 186
P E+ ++ E F R AD GR + +N +I + + + P
Sbjct: 131 FIRPFPTWDEWPEFARETFQAFR-------TADVGR--ELIIDQNAFIEGALPKCVVRPL 181
Query: 187 NKEIMDLVS-------DSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTP 239
+ MD D PL W +L G + AL Y P
Sbjct: 182 TEVEMDHYREPFLKPVDREPL--WRFPNELPIAG----EPANIVALVEAYMNWLHQSPVP 235
Query: 240 EVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEE 299
+++ P +LI P E + + + +PN + + + G H++QE +P+
Sbjct: 236 KLLFWGTPGVLI----------PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNPDL 281
Query: 300 VNQLILTFL 308
+ I +L
Sbjct: 282 IGSEIARWL 290
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 132/308 (42%), Gaps = 38/308 (12%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ LGL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGR---LDAKTVVRNI---YILFSRSE 180
P E+ ++ E F R AD GR +D + Y++ +E
Sbjct: 131 FIRPFPTWDEWPEFARETFQAFR-------TADVGRELIIDQNAFIEGALPKYVVRPLTE 183
Query: 181 IPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPE 240
+ + + + V D PL W +L G + AL Y P+
Sbjct: 184 VEMDHYREPFLKPV-DREPL--WRFPNELPIAG----EPANIVALVEAYMNWLHQSPVPK 236
Query: 241 VIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEV 300
++ P +LI P E + + + +PN + + + G H++QE +P+ +
Sbjct: 237 LLFWGTPGVLI----------PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNPDLI 282
Query: 301 NQLILTFL 308
I +L
Sbjct: 283 GSEIARWL 290
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 133/308 (43%), Gaps = 38/308 (12%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ LGL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGR---LDAKTVVRNI---YILFSRSE 180
P E+ ++ E F R AD GR +D + + +++ +E
Sbjct: 131 FIRPIPTWDEWPEFARELFQAFR-------TADVGRELIIDQNAFIEQVLPKFVVRPLTE 183
Query: 181 IPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPE 240
+ + + + V D PL W +L G + AL Y P+
Sbjct: 184 VEMDHYREPFLKPV-DREPL--WRFPNELPIAG----EPANIVALVEAYMNWLHQSPVPK 236
Query: 241 VIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEV 300
++ P +LI P E + + + +PN + + + G H++QE +P+ +
Sbjct: 237 LLFWGTPGVLI----------PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNPDLI 282
Query: 301 NQLILTFL 308
I +L
Sbjct: 283 GSEIARWL 290
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 130/309 (42%), Gaps = 40/309 (12%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ LGL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRSEIPIAPE 186
P E+ ++ E F R AD GR + +N +I + + P
Sbjct: 131 FIRPIPTWDEWPEFARETFQAFR-------TADVGR--ELIIDQNAFIEGVLPKCVVRPL 181
Query: 187 NKEIMDLVS-------DSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTP 239
+ MD D PL W ++ G + AL Y P
Sbjct: 182 TEVEMDHYREPFLKPVDREPL--WRFPNEIPIAG----EPANIVALVEAYMNWLHQSPVP 235
Query: 240 EVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEE 299
+++ P +LI P E + + + +PN + + + G H++QE +P+
Sbjct: 236 KLLFWGTPGVLI----------PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNPDL 281
Query: 300 VNQLILTFL 308
+ I +L
Sbjct: 282 IGSEIARWL 290
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 130/309 (42%), Gaps = 40/309 (12%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 11 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 69
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ LGL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 70 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 127
Query: 127 VPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRSEIPIAPE 186
P E+ ++ E F R AD GR + +N +I + + P
Sbjct: 128 FIRPIPTWDEWPEFARETFQAFR-------TADVGR--ELIIDQNAFIEGVLPKCVVRPL 178
Query: 187 NKEIMDLVS-------DSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTP 239
+ MD D PL W ++ G + AL Y P
Sbjct: 179 TEVEMDHYREPFLKPVDREPL--WRFPNEIPIAG----EPANIVALVEAYMNWLHQSPVP 232
Query: 240 EVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEE 299
+++ P +LI P E + + + +PN + + + G H++QE +P+
Sbjct: 233 KLLFWGTPGVLI----------PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNPDL 278
Query: 300 VNQLILTFL 308
+ I +L
Sbjct: 279 IGSEIARWL 287
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 130/309 (42%), Gaps = 40/309 (12%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ +GL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRSEIPIAPE 186
P E+ ++ E F R AD GR + +N +I + + P
Sbjct: 131 FIRPIPTWDEWPEFARETFQAFR-------TADVGR--ELIIDQNAFIEGVLPKCVVRPL 181
Query: 187 NKEIMDLVS-------DSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTP 239
+ MD D PL W +L G + AL Y P
Sbjct: 182 TEVEMDHYREPFLKPVDREPL--WRFPNELPIAG----EPANIVALVEAYMNWLHQSPVP 235
Query: 240 EVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEE 299
+++ P +LI P E + + + +PN + + + G H++QE +P+
Sbjct: 236 KLLFWGTPGVLI----------PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNPDL 281
Query: 300 VNQLILTFL 308
+ I +L
Sbjct: 282 IGSEIARWL 290
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 2 DQIEHKFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCR 61
+ +H +++ + +H GA ++ LHG+P W+ W +++G + I PD R
Sbjct: 7 EDFKHYEVQLPDVKIHYVREGAGP-TLLLLHGWPGFWWEWS-KVIGPLAEHYDVIVPDLR 64
Query: 62 GYGLSDPP--AEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERV 119
G+G S+ P + K S DD A+LD LG+ K ++V DF A+ + F ++ +RV
Sbjct: 65 GFGDSEKPDLNDLSKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRV 124
Query: 120 SGVITLGVPILPP-GPIEF 137
PI P GP+ F
Sbjct: 125 IKAAIFD-PIQPDFGPVYF 142
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 134/312 (42%), Gaps = 35/312 (11%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ LGL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPILPPGPIEFH--KYLPEGFYISRWQEPGRA--EADFGR---LDAKTVVRNIY---ILF 176
P EFH + E + +E +A AD GR +D + + ++
Sbjct: 131 FIRPIPTWDEFHHTEVAEEQDHAEAARETFQAFRTADVGRELIIDQNAFIERVLPGGVVR 190
Query: 177 SRSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENF 236
+E+ + + + V D PL W +L G + AL Y
Sbjct: 191 PLTEVEMDHYREPFLKPV-DREPL--WRFPNELPIAG----EPANIVALVEAYMNWLHQS 243
Query: 237 STPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQS 296
P+++ P LI P E + + + +PN + + + G H++QE +
Sbjct: 244 PVPKLLFWGTPGALI----------PPAE----AARLAESLPNCKTVDIGPGLHYLQEDN 289
Query: 297 PEEVNQLILTFL 308
P+ + I +L
Sbjct: 290 PDLIGSEIARWL 301
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 134/312 (42%), Gaps = 35/312 (11%)
Query: 8 FIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLS 66
+++V G +H + G D V+FLHG P Y WR+ + VA + R IAPD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
D P F D V L A ++ LGL +V LV D+G+ + +A ++ ERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPILPPGPIEFH--KYLPEGFYISRWQEPGRA--EADFGR---LDAKTVVRNIY---ILF 176
P EFH + E + +E +A AD GR +D + + ++
Sbjct: 131 FIRPIPTWDEFHHTEVAEEQDHAEAARETFQAFRTADVGRELIIDQNAFIERVLPGGVVR 190
Query: 177 SRSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENF 236
+E+ + + + V D PL W +L G + AL Y
Sbjct: 191 PLTEVEMDHYREPFLKPV-DREPL--WRFPNELPIAG----EPANIVALVEAYMNWLHQS 243
Query: 237 STPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQS 296
P+++ P LI P E + + + +PN + + + G H++QE +
Sbjct: 244 PVPKLLFWGTPGALI----------PPAE----AARLAESLPNCKTVDIGPGLHYLQEDN 289
Query: 297 PEEVNQLILTFL 308
P+ + I +L
Sbjct: 290 PDLIGSEIARWL 301
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 124/314 (39%), Gaps = 56/314 (17%)
Query: 8 FIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSD 67
F+ G ++ + G+ V+F HG+P W +QM +++ G+R IA D RG+G SD
Sbjct: 3 FVAKDGTQIYFKDWGS-GKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 68 PPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQH-QERVSGVITLG 126
P + DD+ +++HL L +V LV G + +H RV+G++ LG
Sbjct: 62 QPW--TGNDYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 127 V--------PILPPG-PIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFS 177
P P G P++ R Q A F ++ VV +
Sbjct: 120 AVTPIFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQ-GVQTQ 178
Query: 178 RSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFS 237
+I + K +D V+ F E D FR
Sbjct: 179 TLQIALLASLKATVDCVTA-------FAETD------------FR--------------- 204
Query: 238 TPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGK-AKDLVPNLEIIHLPEGSHFVQEQS 296
P++ + VP L+I GD D + F +GK A +L+ E+ + H
Sbjct: 205 -PDMAKIDVPTLVIHGDGDQIVPFE------TTGKVAAELIKGAELKVYKDAPHGFAVTH 257
Query: 297 PEEVNQLILTFLNK 310
+++N+ +L FL +
Sbjct: 258 AQQLNEDLLAFLKR 271
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 124/314 (39%), Gaps = 56/314 (17%)
Query: 8 FIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSD 67
F+ G ++ + G+ V+F HG+P W +QM +++ G+R IA D RG+G SD
Sbjct: 3 FVAKDGTQIYFKDWGS-GKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 68 PPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQH-QERVSGVITLG 126
P + DD+ +++HL L +V LV G + +H RV+G++ LG
Sbjct: 62 QPW--TGNDYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 127 V--------PILPPG-PIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFS 177
P P G P++ R Q A F ++ VV +
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQ-GVQTQ 178
Query: 178 RSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFS 237
+I + K +D V+ F E D FR
Sbjct: 179 TLQIALLASLKATVDCVTA-------FAETD------------FR--------------- 204
Query: 238 TPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGK-AKDLVPNLEIIHLPEGSHFVQEQS 296
P++ + VP L+I GD D + F +GK A +L+ E+ + H
Sbjct: 205 -PDMAKIDVPTLVIHGDGDQIVPFE------TTGKVAAELIKGAELKVYKDAPHGFAVTH 257
Query: 297 PEEVNQLILTFLNK 310
+++N+ +L FL +
Sbjct: 258 AQQLNEDLLAFLKR 271
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 133/319 (41%), Gaps = 43/319 (13%)
Query: 2 DQIEHKFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCR 61
+ E + +V G+ LH + G +V+ +HGF + WY W HQ++ F IAPD
Sbjct: 8 NGFESAYREVDGVKLHYVKGG-QGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLP 65
Query: 62 GYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVF-------LVAKDFGALTAYMFAIQ 114
G G S+PP KT + + +A+ H LA+ F LVA D G Y ++
Sbjct: 66 GLGQSEPP----KTGYS---GEQVAVYLH-KLARQFSPDRPFDLVAHDIGIWNTYPMVVK 117
Query: 115 HQERVSGVITLGVPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYI 174
+Q ++ ++ + PI F + +G + W A D RL A+T++
Sbjct: 118 NQADIARLVYMEAPIPDARIYRFPAFTAQGESLV-WHFSFFAADD--RL-AETLIAGKER 173
Query: 175 LFSRSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRE 234
F I N E+ F+E L Y Y K A YR L E
Sbjct: 174 FFLEHFIKSHASNTEV-------------FSERLLDLYARSYAKPHSLNASFEYYRALNE 220
Query: 235 NFSTPEVIA---VKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHF 291
+ +A +++P + + G + +E + K ++E LP H+
Sbjct: 221 SVRQNAELAKTRLQMPTMTLAGGGAGGMGTFQLE------QMKAYAEDVEGHVLPGCGHW 274
Query: 292 VQEQSPEEVNQLILTFLNK 310
+ E+ +N+L++ FL++
Sbjct: 275 LPEECAAPMNRLVIDFLSR 293
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 132/323 (40%), Gaps = 51/323 (15%)
Query: 2 DQIEHKFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCR 61
+ E + +V G+ LH + G +V+ +HGF + WY W HQ++ F IAPD
Sbjct: 8 NGFESAYREVDGVKLHYVKGG-QGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLP 65
Query: 62 GYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVF-------LVAKDFGALTAYMFAIQ 114
G G S+PP KT + + +A+ H LA+ F LVA D G Y ++
Sbjct: 66 GLGQSEPP----KTGYS---GEQVAVYLH-KLARQFSPDRPFDLVAHDIGIWNTYPMVVK 117
Query: 115 HQERVSGVITLGVPILPPGPIEFHKYLPEG----FYISRWQEPGRAEADFGRLDAKTVVR 170
+Q ++ ++ + PI F + +G +Y S + R A+T++
Sbjct: 118 NQADIARLVYMEAPIPDARIYRFPAFTAQGESLVWYFSFFAADDRL--------AETLIA 169
Query: 171 NIYILFSRSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYR 230
F I N E+ F+E L Y Y K A YR
Sbjct: 170 GKERFFLEHFIKSHASNTEV-------------FSERLLDLYARSYAKPHSLNASFEYYR 216
Query: 231 TLRENFSTPEVIA---VKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPE 287
L E+ +A +++P + + G + +E + K ++E LP
Sbjct: 217 ALNESVRQNAELAKTRLQMPTMTLAGGGHGGMGTFQLE------QMKAYAEDVEGHVLPG 270
Query: 288 GSHFVQEQSPEEVNQLILTFLNK 310
H++ E+ +N+L++ FL++
Sbjct: 271 CGHWLPEECAAPMNRLVIDFLSR 293
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 133/319 (41%), Gaps = 43/319 (13%)
Query: 2 DQIEHKFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCR 61
+ E + +V G+ LH + G +V+ +HGF + WY W HQ++ F IAPD
Sbjct: 8 NGFESAYREVDGVKLHYVKGG-QGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLP 65
Query: 62 GYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVF-------LVAKDFGALTAYMFAIQ 114
G G S+PP KT + + +A+ H LA+ F LVA D G Y ++
Sbjct: 66 GLGQSEPP----KTGYS---GEQVAVYLH-KLARQFSPDRPFDLVAHDIGIWNTYPMVVK 117
Query: 115 HQERVSGVITLGVPILPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYI 174
+Q ++ ++ + PI F + +G + W A D RL A+T++
Sbjct: 118 NQADIARLVYMEAPIPDARIYRFPAFTAQGESLV-WHFSFFAADD--RL-AETLIAGKER 173
Query: 175 LFSRSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRE 234
F I N E+ F+E L Y Y K A YR L E
Sbjct: 174 FFLEHFIKSHASNTEV-------------FSERLLDLYARSYAKPHSLNASFEYYRALNE 220
Query: 235 NFSTPEVIA---VKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHF 291
+ +A +++P + + G + +E + K ++E LP H+
Sbjct: 221 SVRQNAELAKTRLQMPTMTLAGGGHGGMGTFQLE------QMKAYAEDVEGHVLPGCGHW 274
Query: 292 VQEQSPEEVNQLILTFLNK 310
+ E+ +N+L++ FL++
Sbjct: 275 LPEECAAPMNRLVIDFLSR 293
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 56/314 (17%)
Query: 8 FIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSD 67
F+ G ++ + G+ V+F HG+ W +QM +++ G+R IA D RG+G SD
Sbjct: 3 FVAKDGTQIYFKDWGS-GKPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 68 PPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQH-QERVSGVITLG 126
P + DD+ +++HL L +V LV G + +H RV+G++ LG
Sbjct: 62 QPW--TGNDYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 127 V--------PILPPG-PIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFS 177
P P G P++ R Q A F ++ VV +
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQ-GVQTQ 178
Query: 178 RSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFS 237
+I + K +D V+ F E D FR
Sbjct: 179 TLQIALLASLKATVDCVTA-------FAETD------------FR--------------- 204
Query: 238 TPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGK-AKDLVPNLEIIHLPEGSHFVQEQS 296
P++ + VP L+I GD D + F +GK A +L+ E+ + H
Sbjct: 205 -PDMAKIDVPTLVIHGDGDQIVPFE------TTGKVAAELIKGAELKVYKDAPHGFAVTH 257
Query: 297 PEEVNQLILTFLNK 310
+++N+ +L FL +
Sbjct: 258 AQQLNEDLLAFLKR 271
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 56/314 (17%)
Query: 8 FIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSD 67
F+ G ++ + G+ V+F HG+ W +QM +++ G+R IA D RG+G SD
Sbjct: 3 FVAKDGTQIYFKDWGS-GKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 68 PPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQH-QERVSGVITLG 126
P + DD+ +++HL L +V LV G + +H RV+G++ LG
Sbjct: 62 QPW--TGNDYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 127 V--------PILPPG-PIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFS 177
P P G P++ R Q A F ++ VV +
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQ-GVQTQ 178
Query: 178 RSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFS 237
+I + K +D V+ F E D FR
Sbjct: 179 TLQIALLASLKATVDCVTA-------FAETD------------FR--------------- 204
Query: 238 TPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGK-AKDLVPNLEIIHLPEGSHFVQEQS 296
P++ + VP L+I GD D + F +GK A +L+ E+ + H
Sbjct: 205 -PDMAKIDVPTLVIHGDGDQIVPFE------TTGKVAAELIKGAELKVYKDAPHGFAVTH 257
Query: 297 PEEVNQLILTFLNK 310
+++N+ +L FL +
Sbjct: 258 AQQLNEDLLAFLKR 271
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 56/314 (17%)
Query: 8 FIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSD 67
F+ G ++ + G+ V+F HG+ W +QM +++ G+R IA D RG+G SD
Sbjct: 3 FVAKDGTQIYFKDWGS-GKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 68 PPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQH-QERVSGVITLG 126
P + DD+ +++HL L +V LV G + +H RV+G++ LG
Sbjct: 62 QPW--TGNDYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 127 V--------PILPPG-PIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFS 177
P P G P++ R Q A F ++ VV +
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQ-GVQTQ 178
Query: 178 RSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFS 237
+I + K +D V+ F E D FR
Sbjct: 179 TLQIALLASLKATVDCVTA-------FAETD------------FR--------------- 204
Query: 238 TPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGK-AKDLVPNLEIIHLPEGSHFVQEQS 296
P++ + VP L+I GD D + F +GK A +L+ E+ + H
Sbjct: 205 -PDMAKIDVPTLVIHGDGDQIVPFE------TTGKVAAELIKGAELKVYKDAPHGFAVTH 257
Query: 297 PEEVNQLILTFLNK 310
+++N+ +L FL +
Sbjct: 258 AQQLNEDLLAFLKR 271
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 13 GLNLH-IAEAGADAH-VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPA 70
GL H + E +DA V + LHG P Y +R + A +G R IAPD G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPIL 130
+ E +F+ + LLA+++ L L + LV +D+G + R +I + ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLM 152
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 13 GLNLH-IAEAGADAH-VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPA 70
GL H + E +DA V + LHG P Y +R + A +G R IAPD G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPIL 130
+ E +F+ + LLA+++ L L + LV +D+G + R +I + ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLM 152
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 13 GLNLH-IAEAGADAH-VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPA 70
GL H + E +DA V + LHG P Y +R + A +G R IAPD G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPIL 130
+ E +F+ + LLA+++ L L + LV +D+G + R +I + ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLM 152
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 13 GLNLH-IAEAGADAH-VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPA 70
GL H + E +DA V + LHG P Y +R + A +G R IAPD G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPIL 130
+ E +F+ + LLA+++ L L + LV +D+G + R +I + ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLM 152
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 13 GLNLH-IAEAGADAH-VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPA 70
GL H + E +DA V + LHG P Y +R + A +G R IAPD G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPIL 130
+ E +F+ + LLA+++ L L + LV +D+G + R +I + ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLM 152
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 12 QGLNLHIAEAGA-DA-HVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPP 69
+GL +H + G DA H + LHG P + +R + AG R +APD G+G SD P
Sbjct: 31 EGLRMHYVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKP 90
Query: 70 AEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITL 125
+ +F LLA LD L L +V LV +D+G + + + V +I +
Sbjct: 91 TDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVM 146
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 124/311 (39%), Gaps = 48/311 (15%)
Query: 16 LHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKT 75
L +A A+ ++ HG +W + +A AG+R IA D G+ S PA +
Sbjct: 37 LDVAPKKANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAH-YQY 95
Query: 76 SFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPPGPI 135
SFQ + + A+L+ LG+A+ ++ G A +A+ + +V ++ + PI
Sbjct: 96 SFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLV-------NPI 148
Query: 136 EFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRSEIPIAPENKEIMDLVS 195
+ G P R+ D+ R D +T I + ++
Sbjct: 149 GLEDWKALGV-------PWRSVDDWYRRDLQTSAEGIR------------QYQQATYYAG 189
Query: 196 DSTP-LPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTP---EVIAVKVPALLI 251
+ P W + G E + +AL T F+ P E+ ++ P LL+
Sbjct: 190 EWRPEFDRWVQXQAGXYRGKGRESVAWNSAL-----TYDXIFTQPVVYELDRLQXPTLLL 244
Query: 252 MGDKDYF----------LKFPGIEDYIRSGK-AKDLVPNLEIIHLPEGSHFVQEQSPEEV 300
+G+KD LK + +Y + GK A +P ++ P+ H Q Q+PE
Sbjct: 245 IGEKDNTAIGKDAAPAELK-ARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQIQAPERF 303
Query: 301 NQLILTFLNKH 311
+Q +L L
Sbjct: 304 HQALLEGLQTQ 314
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 126/316 (39%), Gaps = 63/316 (19%)
Query: 14 LNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPE 73
+N + +E A+ + V+FLHG Y WRH + + R I PD G G S
Sbjct: 33 INYYDSEKHAE-NAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNG- 89
Query: 74 KTSFQDMVDDLLAILDHLGL-AKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPP 132
D L A + L L K+ V D+GA A+ +A +HQ+R+ ++ + +
Sbjct: 90 SYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD-- 147
Query: 133 GPIEFHKYLPEGFYISRWQEPGRAEADFGRLDA----KTVVRNIYILFSRSEIPIAPENK 188
I W E E D + + K V+ N + F + +P
Sbjct: 148 -------------VIESWDEWPDIEEDIALIKSEEGEKMVLENNF--FVETVLP-----S 187
Query: 189 EIMDLVSDSTPLPPWFTEEDLAAYGALYEKSG--FRTALQVPYRTLRENFSTPEVIAV-- 244
+IM L P E+ AAY +++ G R L P P+V+ +
Sbjct: 188 KIM------RKLEP----EEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVR 237
Query: 245 ----------KVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQE 294
+P L I D +F + I G K PN E + + +G HF+QE
Sbjct: 238 NYNAYLRASDDLPKLFIESDPGFF------SNAIVEGAKK--FPNTEFVKV-KGLHFLQE 288
Query: 295 QSPEEVNQLILTFLNK 310
+P+E+ + I +F+ +
Sbjct: 289 DAPDEMGKYIKSFVER 304
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 126/316 (39%), Gaps = 63/316 (19%)
Query: 14 LNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPE 73
+N + +E A+ + V+FLHG Y WRH + + R I PD G G S
Sbjct: 34 INYYDSEKHAE-NAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNG- 90
Query: 74 KTSFQDMVDDLLAILDHLGL-AKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPP 132
D L A + L L K+ V D+GA A+ +A +HQ+R+ ++ + +
Sbjct: 91 SYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD-- 148
Query: 133 GPIEFHKYLPEGFYISRWQEPGRAEADFGRLDA----KTVVRNIYILFSRSEIPIAPENK 188
I W E E D + + K V+ N + F + +P
Sbjct: 149 -------------VIESWDEWPDIEEDIALIKSEEGEKMVLENNF--FVETVLP-----S 188
Query: 189 EIMDLVSDSTPLPPWFTEEDLAAYGALYEKSG--FRTALQVPYRTLRENFSTPEVIAV-- 244
+IM L P E+ AAY +++ G R L P P+V+ +
Sbjct: 189 KIM------RKLEP----EEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVR 238
Query: 245 ----------KVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQE 294
+P L I D +F + I G K PN E + + +G HF+QE
Sbjct: 239 NYNAYLRASDDLPKLFIESDPGFF------SNAIVEGAKK--FPNTEFVKV-KGLHFLQE 289
Query: 295 QSPEEVNQLILTFLNK 310
+P+E+ + I +F+ +
Sbjct: 290 DAPDEMGKYIKSFVER 305
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 126/316 (39%), Gaps = 63/316 (19%)
Query: 14 LNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPE 73
+N + +E A+ + V+FLHG Y WRH + + R I PD G G S
Sbjct: 33 INYYDSEKHAE-NAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNG- 89
Query: 74 KTSFQDMVDDLLAILDHLGL-AKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPP 132
D L A + L L K+ V D+GA A+ +A +HQ+R+ ++ + +
Sbjct: 90 SYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD-- 147
Query: 133 GPIEFHKYLPEGFYISRWQEPGRAEADFGRLDA----KTVVRNIYILFSRSEIPIAPENK 188
I W E E D + + K V+ N + F + +P
Sbjct: 148 -------------VIESWDEWPDIEEDIALIKSEEGEKMVLENNF--FVETVLP-----S 187
Query: 189 EIMDLVSDSTPLPPWFTEEDLAAYGALYEKSG--FRTALQVPYRTLRENFSTPEVIAV-- 244
+IM L P E+ AAY +++ G R L P P+V+ +
Sbjct: 188 KIM------RKLEP----EEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVR 237
Query: 245 ----------KVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQE 294
+P L I D +F + I G K PN E + + +G HF+QE
Sbjct: 238 NYNAYLRASDDLPKLFIESDPGFF------SNAIVEGAKK--FPNTEFVKV-KGLHFLQE 288
Query: 295 QSPEEVNQLILTFLNK 310
+P+E+ + I +F+ +
Sbjct: 289 DAPDEMGKYIKSFVER 304
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 13 GLNLH-IAEAGADAH-VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPA 70
GL H + E +DA V + LHG P Y +R + A +G R IAPD G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPIL 130
+ E +F+ + LLA+++ L L + LV + +G + R +I + ++
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNACLM 152
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 118/301 (39%), Gaps = 41/301 (13%)
Query: 14 LNLHIAEAG-ADAHVVVFLHGFPEIWYSWRH--QMVGVATAGFRAIAPDCRGYGLSDPPA 70
L LH EAG + VV LHG SW + + + V F +A D GYG SD A
Sbjct: 44 LKLHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRA 103
Query: 71 EPEK-TSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPI 129
E + + M L + D LGL +V LV G TA FA+ + R ++ +G
Sbjct: 104 EHGQFNRYAAMA--LKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMG--- 158
Query: 130 LPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRSEIPIAPENKE 189
PG + + + P +P + N+ + + +N
Sbjct: 159 --PGGLSINLFAP---------DPTEGVKRLSKFSVAPTRENLEAFL---RVMVYDKNLI 204
Query: 190 IMDLVSDSTPLPPWFTEEDLAAYGALYEK-SGFRTALQVPYRTLRENFSTPEVIAVKVPA 248
+LV L T E L A A+ + +G + +R EV ++ P
Sbjct: 205 TPELVDQRFALAS--TPESLTATRAMGKSFAGADFEAGMMWR---------EVYRLRQPV 253
Query: 249 LLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEVNQLILTFL 308
LLI G +D G +++ +P ++ + H+VQ + +E N+L + FL
Sbjct: 254 LLIWGREDRVNPLDGALVALKT------IPRAQLHVFGQCGHWVQVEKFDEFNKLTIEFL 307
Query: 309 N 309
Sbjct: 308 G 308
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 3 QIEHKFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRG 62
E + +++ +AG A ++ LHG+P+ W H++ + F +A D RG
Sbjct: 4 NFEQTIVDTTEARINLVKAGHGA-PLLLLHGYPQTHVMW-HKIAPLLANNFTVVATDLRG 61
Query: 63 YGLSDPPAE-PEKTSFQD--MVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERV 119
YG S PA P ++ M D + ++ LG + ++V D GA A+ A+ H RV
Sbjct: 62 YGDSSRPASVPHHINYSKRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRV 121
Query: 120 SGVITLGV 127
+ L +
Sbjct: 122 KKLALLDI 129
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 8/173 (4%)
Query: 3 QIEHKFIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCR 61
+IE + V G ++ E GA DA VV+FLHG P + WR+ + V+ IAPD
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVA-HCIAPDLI 64
Query: 62 GYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSG 121
G+G S P + F D V L A ++ G+ +LVA+D+G A+ A + + V G
Sbjct: 65 GFGQSGKPDIAYR--FFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRG 122
Query: 122 VITLGVPILPPGPIEFHKYLPEG--FYISRWQEPGRAEADFGRLDAKTVVRNI 172
+ + P +FH+ E +++ PG EA L+A V +
Sbjct: 123 LAFMEFIRPMPTWQDFHQDHAEAARAVFRKFRTPGEGEAMI--LEANAFVERV 173
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 118/301 (39%), Gaps = 41/301 (13%)
Query: 14 LNLHIAEAG-ADAHVVVFLHGFPEIWYSWRH--QMVGVATAGFRAIAPDCRGYGLSDPPA 70
L LH EAG + VV LHG SW + + + V F +A D GYG SD A
Sbjct: 24 LKLHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRA 83
Query: 71 EPEK-TSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPI 129
E + + M L + D LGL +V LV G TA FA+ + R ++ +G
Sbjct: 84 EHGQFNRYAAMA--LKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMG--- 138
Query: 130 LPPGPIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRSEIPIAPENKE 189
PG + + + P +P + N+ + + +N
Sbjct: 139 --PGGLSINLFAP---------DPTEGVKRLSKFSVAPTRENLEAFL---RVMVYDKNLI 184
Query: 190 IMDLVSDSTPLPPWFTEEDLAAYGALYEK-SGFRTALQVPYRTLRENFSTPEVIAVKVPA 248
+LV L T E L A A+ + +G + +R EV ++ P
Sbjct: 185 TPELVDQRFALAS--TPESLTATRAMGKSFAGADFEAGMMWR---------EVYRLRQPV 233
Query: 249 LLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEVNQLILTFL 308
LLI G +D G +++ +P ++ + H+VQ + +E N+L + FL
Sbjct: 234 LLIWGREDRVNPLDGALVALKT------IPRAQLHVFGQCGHWVQVEKFDEFNKLTIEFL 287
Query: 309 N 309
Sbjct: 288 G 288
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 3 QIEHKFIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCR 61
+IE + V G ++ E GA DA VV+FLHG P + WR+ + V+ IAPD
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVA-HCIAPDLI 64
Query: 62 GYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSG 121
G+G S P + F D V L A ++ G+ +LVA+D+G A+ A + + V G
Sbjct: 65 GFGQSGKPDIAYR--FFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRG 122
Query: 122 V 122
+
Sbjct: 123 L 123
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 3 QIEHKFIKVQGLNLHIAEAGA-DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCR 61
+IE + V G ++ E GA DA VV+FLHG P + WR+ + V+ IAPD
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVA-HCIAPDLI 64
Query: 62 GYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSG 121
G+G S P + F D V L A ++ G+ +LVA+D+G A+ A + + V G
Sbjct: 65 GFGQSGKPDIAYR--FFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRG 122
Query: 122 V 122
+
Sbjct: 123 L 123
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 15/150 (10%)
Query: 7 KFIKVQ----GLNLHIAEAGADAHVVVFLHGF---PEIWYSWRHQMVGVATAGFRAIAPD 59
+F+ V+ L +H + G VV LHG W ++ + + AG+R I D
Sbjct: 14 RFLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLD 73
Query: 60 CRGYGLSDPPAEPEKTSFQDMVDDLL-AILDHLGLAKVFLVAKDFGALTAYMFAIQHQER 118
C G+G SD S D+ +L +++D L +AK+ L+ G ++ F ++ ER
Sbjct: 74 CPGWGKSDSVVNSGSRS--DLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPER 131
Query: 119 VSGVI-----TLGVPILPPGPIEFHKYLPE 143
V ++ T G+ + P P E K L +
Sbjct: 132 VGKLVLMGGGTGGMSLFTPMPTEGIKRLNQ 161
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 125/316 (39%), Gaps = 63/316 (19%)
Query: 14 LNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPE 73
+N + +E A+ + V+FLHG Y WRH + + R I PD G G S
Sbjct: 34 INYYDSEKHAE-NAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNG- 90
Query: 74 KTSFQDMVDDLLAILDHLGL-AKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPP 132
D L A + L L K+ V D+GA A+ +A +HQ+R+ ++ + +
Sbjct: 91 SYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD-- 148
Query: 133 GPIEFHKYLPEGFYISRWQEPGRAEADFGRLDA----KTVVRNIYILFSRSEIPIAPENK 188
I W E E D + + K V+ N + F + +P
Sbjct: 149 -------------VIESWDEWPDIEEDIALIKSEEGEKMVLENNF--FVETVLP-----S 188
Query: 189 EIMDLVSDSTPLPPWFTEEDLAAYGALYEKSG--FRTALQVPYRTLRENFSTPEVIAV-- 244
+IM L P E+ AAY +++ G R L P P+V+ +
Sbjct: 189 KIM------RKLEP----EEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVR 238
Query: 245 ----------KVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQE 294
+P L I D +F + I G K PN + + +G HF+QE
Sbjct: 239 NYNAYLRASDDLPKLFIESDPGFF------SNAIVEGAKK--FPNTAFVKV-KGLHFLQE 289
Query: 295 QSPEEVNQLILTFLNK 310
+P+E+ + I +F+ +
Sbjct: 290 DAPDEMGKYIKSFVER 305
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 115/284 (40%), Gaps = 37/284 (13%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAI 87
VV +HG+P SW +Q+ + AG+R I D RG+G S P E + + DL +
Sbjct: 30 VVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYE--YDTFTSDLHQL 87
Query: 88 LDHLGLAKVFLVA-KDFGALTAYMFAIQHQERVSGVITLGVPILPPGPIEFHKYLPEGFY 146
L+ L L V LV G A + +R+ V+ G +PP Y
Sbjct: 88 LEQLELQNVTLVGFSXGGGEVARYISTYGTDRIEKVVFAGA--VPP-------------Y 132
Query: 147 ISRWQEPGRAEADFGRLDA-KTVVRNIYILFSRSEIPIAPENKEIMDLVSDSTPLPPWFT 205
+ + ++ D ++ K+ V N + F + DLVS+S L W
Sbjct: 133 LYKSEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFRLYNWDI 192
Query: 206 EEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPEVIAVKVPALLIMGDKDYFLKFPGIE 265
+ G L + F + +R E F+ +P L+I GD D + F
Sbjct: 193 AAGASPKGTLDCITAFS---KTDFRKDLEKFN--------IPTLIIHGDSDATVPFE--- 238
Query: 266 DYIRSGK-AKDLVPNLEIIHLPEGSHFVQEQSPEEVNQLILTFL 308
SGK + +PN ++ + G H + +E N+ +L FL
Sbjct: 239 ---YSGKLTHEAIPNSKVALIKGGPHGLNATHAKEFNEALLLFL 279
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 28 VVFLHGFP---EIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDL 84
V+ +HG + +WR + ++ +R IAPD G+G +D P E S VD +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRP-ENYNYSKDSWVDHI 85
Query: 85 LAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
+ I+D L + K +V FG A A+++ ERV ++ +G
Sbjct: 86 IGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMG 127
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 18 IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEK--- 74
A G D ++ LHGFP+ W H++ F+ I D GYG SD P E+
Sbjct: 26 FARVGGDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTP 84
Query: 75 TSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGV 127
+ + M L+ ++ LG L D GA +Y A+ R+S + L +
Sbjct: 85 YTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 18 IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEK--- 74
A G D ++ LHGFP+ W H++ F+ I D GYG SD P E+
Sbjct: 26 FARVGGDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTP 84
Query: 75 TSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGV 127
+ + M L+ ++ LG L D GA +Y A+ R+S + L +
Sbjct: 85 YTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 28 VVFLHGFP---EIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDL 84
V+ +HG + +WR + ++ +R IAPD G+G +D P E S VD +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRP-ENYNYSKDSWVDHI 85
Query: 85 LAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
+ I+D L + K +V FG A A+++ ERV ++ +G
Sbjct: 86 IGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMG 127
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 124/316 (39%), Gaps = 60/316 (18%)
Query: 8 FIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSD 67
F G ++ + G+ +VF HG+P SW QM+ +A G+R IA D RG+G S
Sbjct: 3 FTTRDGTQIYYKDWGS-GQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSS 61
Query: 68 PPAEPEKTSFQDM---VDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQH-QERV--SG 121
P S DM DDL +++HL L L G + +H RV +G
Sbjct: 62 QP-----WSGNDMDTYADDLAQLIEHLDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAG 116
Query: 122 VITLGVPIL-----PPG--PIEFHKYLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYI 174
+I+ P++ PG P+E + + R Q K + +
Sbjct: 117 LISAVPPLMLKTEANPGGLPMEVFDGIRQASLADRSQL------------YKDLASGPFF 164
Query: 175 LFSRSEIPIAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRE 234
F++ P A + ++D WF + +AA G + A + E
Sbjct: 165 GFNQ---PGAKSSAGMVD----------WFWLQGMAA--------GHKNAYDC-IKAFSE 202
Query: 235 NFSTPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGS-HFVQ 293
T ++ + VP L++ GD D + SG A + + + G+ H +
Sbjct: 203 TDFTEDLKKIDVPTLVVHGDADQVVPIEA------SGIASAALVKGSTLKIYSGAPHGLT 256
Query: 294 EQSPEEVNQLILTFLN 309
+ +++N +L F+
Sbjct: 257 DTHKDQLNADLLAFIK 272
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Query: 4 IEHKFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGY 63
E + + V + ++ G ++ LHGFP+ + W ++ + + + D RGY
Sbjct: 5 FERRLVDVGDVTINCV-VGGSGPALLLLHGFPQNLHMWA-RVAPLLANEYTVVCADLRGY 62
Query: 64 GLSDPPA---EPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVS 120
G S P + SF+ M D ++ LG + LV D G T + A+ H + V
Sbjct: 63 GGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVL 122
Query: 121 GVITLGV 127
+ L +
Sbjct: 123 SLAVLDI 129
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 18 IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEK--- 74
A G D ++ LHGFP+ W H++ F+ I D GYG SD P E+
Sbjct: 26 FARVGGDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTP 84
Query: 75 TSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGV 127
+ + M L+ ++ LG L + GA +Y A+ R+S + L +
Sbjct: 85 YTKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAI 87
VV +HGFP +SW Q + AG+R I D RG+G S P + DL +
Sbjct: 27 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPT--TGYDYDTFAADLNTV 84
Query: 88 LDHLGLAKVFLVAKDFGA 105
L+ L L LV G
Sbjct: 85 LETLDLQDAVLVGFSMGT 102
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 14 LNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPE 73
++L+ + GA VV +HGFP +SW Q + AG+R I D RG+G S P
Sbjct: 13 IDLYYEDHGA-GQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPT--T 69
Query: 74 KTSFQDMVDDLLAILDHLGLAKVFLVAKDFG 104
+ DL +L+ L L LV G
Sbjct: 70 GYDYDTFAADLNTVLETLDLQDAVLVGFSMG 100
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 18 IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEK--- 74
A G D ++ LHGFP+ W H++ F+ I D GYG SD P E+
Sbjct: 26 FARVGGDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTP 84
Query: 75 TSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGV 127
+ + M L+ ++ LG L GA +Y A+ R+S + L +
Sbjct: 85 YTKRAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAI 87
VV +HGFP +SW Q + AG+R I D RG+G S P + DL +
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPT--TGYDYDTFAADLNTV 83
Query: 88 LDHLGLAKVFLVAKDFG 104
L+ L L LV G
Sbjct: 84 LETLDLQDAVLVGFSMG 100
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 2 DQIEHKFIKVQGLNLHIAEAGADAH-VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDC 60
+ +E KF++ G + + G+ H VV+ +HG E +W+ + +A G+R +APD
Sbjct: 2 NAMEEKFLEFGGNQICLCSWGSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDL 61
Query: 61 RGYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVS 120
G+G S S + + ++ L + LV GA+ A A +++
Sbjct: 62 FGHGRSSHLEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIK 121
Query: 121 GVITLGVPI 129
+I + +P+
Sbjct: 122 ELILVELPL 130
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAI 87
VV +HGFP +SW Q + AG+R I D RG+G S P + DL +
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPT--TGYDYDTFAADLNTV 83
Query: 88 LDHLGLAKVFLVAKDFG 104
L+ L L LV G
Sbjct: 84 LETLDLQDAVLVGFSTG 100
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 101/290 (34%), Gaps = 56/290 (19%)
Query: 28 VVFLHGFPEIWYSWR-HQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLA 86
VVF+ G +W HQ+ AG+R I D RG G ++ E + Q MV D A
Sbjct: 46 VVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATE---NAEGFTTQTMVADTAA 102
Query: 87 ILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPPGPIEFHKYLPEGFY 146
+++ L +A +V GA A + E VS + + +F Y
Sbjct: 103 LIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELY 162
Query: 147 ISRWQEP------GRAEADFGR--LDAKTVVRNIYILFSRSEIPIAPENKEIMDLVSDST 198
S Q P R +F R L+ V + +FS I P + +D +
Sbjct: 163 DSGVQLPPTYDARARLLENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTN 222
Query: 199 PLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPEVIAVKVPALLIMGDKDYF 258
LP + N + P +L++G D
Sbjct: 223 RLPAY------------------------------RNIAAP---------VLVIGFADDV 243
Query: 259 LKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEVNQLILTFL 308
+ P + + D +PN + +P+ H + PE VN +L F
Sbjct: 244 VTPPYL-----GREVADALPNGRYLQIPDAGHLGFFERPEAVNTAMLKFF 288
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 4 IEHKFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGY 63
E + + V + ++ G ++ LHGFP+ + W ++ + + + D RGY
Sbjct: 5 FERRLVDVGDVTINCV-VGGSGPALLLLHGFPQNLHMWA-RVAPLLANEYTVVCADLRGY 62
Query: 64 GLSDPPA---EPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVS 120
G S P + SF+ M D ++ LG + LV G T + A+ H + V
Sbjct: 63 GGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVL 122
Query: 121 GVITLGV 127
+ L +
Sbjct: 123 SLAVLDI 129
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 101/286 (35%), Gaps = 33/286 (11%)
Query: 24 DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDD 83
DA V+ F HG+P W Q++ GFR +A D RG+G S + DD
Sbjct: 25 DAKVIHFHHGWPLSSDDWDAQLLFFVNKGFRVVAHDRRGHGRSSQVWDGH--DMDHYADD 82
Query: 84 LLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPPGPIEFHKYLPE 143
A+++ LG V G + +H ER L + +PP
Sbjct: 83 AAAVVEKLGTHGAMHVGHSTGGGEVVRYIARHGERNVSKAVL-ISSVPP----------- 130
Query: 144 GFYISRWQEP-GRAEADFGRLDAKTVVRNIYILFSRSEIPIAPENKEIMDLVSDSTPLPP 202
+ P G ++ F A P N+ +
Sbjct: 131 -LMVKTSSNPNGTPKSVFDDFQAHVAANRAQFYLDVPAGPFYGYNRP--GAKPSEGVIYN 187
Query: 203 WFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPEVIAVKVPALLIMGDKDYFLKFP 262
W+ + + + A Y+ G Q + T ++ + +P L+I GD D + P
Sbjct: 188 WWRQGMMGSTKAQYD--GIVAFSQTDF--------TNDLKGITIPVLVIHGDDDQVV--P 235
Query: 263 GIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEVNQLILTFL 308
+ + S K LV N ++I H + ++VN +L FL
Sbjct: 236 YADSGVLSAK---LVKNGKLITYKGAPHGIPTTHADKVNADLLEFL 278
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDP 68
VVF+HG+P +W+ Q+ V AG+R IA D RG+G S P
Sbjct: 22 VVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTP 62
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 8 FIKVQGLNLHI---AEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYG 64
+ V G LH E +A +V + W Q+ + + FR + D RG+G
Sbjct: 6 YAAVNGTELHYRIDGERHGNAPWIVLSNSLGTDLSXWAPQVAAL-SKHFRVLRYDTRGHG 64
Query: 65 LSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGV 122
S+ P P + + + D+L + D L +A+ G LT A +H +R+ V
Sbjct: 65 HSEAPKGP--YTIEQLTGDVLGLXDTLKIARANFCGLSXGGLTGVALAARHADRIERV 120
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 24 DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDD 83
DA V+ F HG+P W Q++ G+R +A D RG+G S + DD
Sbjct: 21 DAPVIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQVWDGH--DMDHYADD 78
Query: 84 LLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQER--VSGVITLGVPIL----PPGPIEF 137
+ A++ HLG+ V G + +H E V+ VP L P P
Sbjct: 79 VAAVVAHLGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGL 138
Query: 138 HKYLPEGF 145
K + +GF
Sbjct: 139 PKSVFDGF 146
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 51 AGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYM 110
A FR I P+ RG+GLS P+E +Q+ V D L ILD LG+ V+ G
Sbjct: 52 ADFRVIVPNWRGHGLS--PSEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVE 109
Query: 111 FAIQHQ-ERVSGVITLGVPILPPGPIEFHKYLPEGFYISRWQE 152
Q ER I + + P P +F K L RW+E
Sbjct: 110 LLEQAGPERAPRGIIMDWLMWAPKP-DFAKSLTLLKDPERWRE 151
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 51 AGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYM 110
A FR I P+ RG+GLS P+E +Q+ V D L ILD LG+ V+ G
Sbjct: 55 ADFRVIVPNWRGHGLS--PSEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVE 112
Query: 111 FAIQHQ-ERVSGVITLGVPILPPGPIEFHKYLPEGFYISRWQE 152
Q ER I + + P P +F K L RW+E
Sbjct: 113 LLEQAGPERAPRGIIMDWLMWAPKP-DFAKSLTLLKDPERWRE 154
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 1 MDQ--IEHKFIKVQGLNLH--IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAI 56
MDQ IE+ + KV G+ ++ + +A + ++ +HG P + + + + + G +
Sbjct: 1 MDQECIEN-YAKVNGIYIYYKLCKAPEEKAKLMTMHGAPGMSHDYLLSLRDMTKEGITVL 59
Query: 57 APDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHL-GLAKVFLVAKDFGALTAYMFAIQH 115
D G G S+ P + K + V++ A+ L G KVFL+ +G A +A+++
Sbjct: 60 FYDQFGCGRSEEP-DQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKY 118
Query: 116 QERVSGVITLG 126
Q+ + G+I G
Sbjct: 119 QDHLKGLIVSG 129
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 1 MDQ--IEHKFIKVQGLNLH--IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAI 56
MDQ IE+ + KV G+ ++ + +A + ++ +HG P + + + + + G +
Sbjct: 1 MDQECIEN-YAKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVL 59
Query: 57 APDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHL-GLAKVFLVAKDFGALTAYMFAIQH 115
D G G S+ P + K + V++ A+ L G KVFL+ +G A +A+++
Sbjct: 60 FYDQFGCGRSEEP-DQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKY 118
Query: 116 QERVSGVITLG 126
Q+ + G+I G
Sbjct: 119 QDHLKGLIVSG 129
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 1 MDQ--IEHKFIKVQGLNLH--IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAI 56
MDQ IE+ + KV G+ ++ + +A + ++ +HG P + + + + + G +
Sbjct: 1 MDQECIEN-YAKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVL 59
Query: 57 APDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHL-GLAKVFLVAKDFGALTAYMFAIQH 115
D G G S+ P + K + V++ A+ L G KVFL+ +G A +A+++
Sbjct: 60 FYDQFGCGRSEEP-DQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKY 118
Query: 116 QERVSGVITLG 126
Q+ + G+I G
Sbjct: 119 QDHLKGLIVSG 129
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 1 MDQ--IEHKFIKVQGLNLH--IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAI 56
MDQ IE+ + KV G+ ++ + +A + ++ +HG P + + + + + G +
Sbjct: 1 MDQECIEN-YAKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVL 59
Query: 57 APDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHL-GLAKVFLVAKDFGALTAYMFAIQH 115
D G G S+ P + K + V++ A+ L G KVFL+ +G A +A+++
Sbjct: 60 FYDQFGCGRSEEP-DQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKY 118
Query: 116 QERVSGVITLG 126
Q+ + G+I G
Sbjct: 119 QDHLKGLIVSG 129
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 1 MDQ--IEHKFIKVQGLNLH--IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAI 56
MDQ IE+ + KV G+ ++ + +A + ++ +HG P + + + + + G +
Sbjct: 1 MDQECIEN-YAKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVL 59
Query: 57 APDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHL-GLAKVFLVAKDFGALTAYMFAIQH 115
D G G S+ P + K + V++ A+ L G KVFL+ +G A +A+++
Sbjct: 60 FYDQFGCGRSEEP-DQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKY 118
Query: 116 QERVSGVITLG 126
Q+ + G+I G
Sbjct: 119 QDHLKGLIVSG 129
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAI 87
VV +HG+P +SW Q + G+R I D RG+G S + DL +
Sbjct: 26 VVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKV--NTGYDYDTFAADLHTV 83
Query: 88 LDHLGLAKVFLVAKDFGA--LTAYMFAIQHQERVS 120
L+ L L V LV G L Y+ H ERV+
Sbjct: 84 LETLDLRDVVLVGFSMGTGELARYVARYGH-ERVA 117
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPA 70
VVF HG+P W +QM+ + G+R IA D RG+G SD P+
Sbjct: 24 VVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPS 66
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 1 MDQ--IEHKFIKVQGLNLH--IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAI 56
MDQ IE+ + KV G+ ++ + +A + ++ +HG P + + + + + G +
Sbjct: 1 MDQECIEN-YAKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVL 59
Query: 57 APDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHL-GLAKVFLVAKDFGALTAYMFAIQH 115
D G G S+ P + K + V++ A+ L G KVFL+ +G A +A+++
Sbjct: 60 FYDQFGCGRSEEP-DQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSAYGGALALAYAVKY 118
Query: 116 QERVSGVITLG 126
Q+ + G+I G
Sbjct: 119 QDHLKGLIVSG 129
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAI 87
VF+HG P S H+ + ++ + D RG G S P A + + +V D+ +
Sbjct: 40 AVFIHGGPGGGISPHHRQL-FDPERYKVLLFDQRGCGRSRPHASLDNNTTWHLVADIERL 98
Query: 88 LDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPPGPIEFHKYLPEG--- 144
+ G+ + + +G+ A +A H ERVS ++ G+ L H Y +G
Sbjct: 99 REMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQ--RLHWYYQDGASR 156
Query: 145 FYISRWQEPGRAEADFGRLDAKTVVRN 171
F+ +W+ +D R D R
Sbjct: 157 FFPEKWERVLSILSDDERKDVIAAYRQ 183
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 51 AGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYM 110
A +R + D RG G S P A+ + D+V D+ + HLG+ + + +G+ A
Sbjct: 59 AKYRIVLFDQRGSGRSTPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALA 118
Query: 111 FAIQHQERVSGVITLGVPILPPGPIEF 137
+A H ++V+ ++ G+ +L +E+
Sbjct: 119 YAQTHPQQVTELVLRGIFLLRRFELEW 145
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 16 LHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPD--CRGYGLSDPPAEPE 73
L++ G ++ HGF +W H ++ T +R + D C G D
Sbjct: 10 LNVRVVGTGDRILFLAHGFGTDQSAW-HLILPYFTQNYRVVLYDLVCAGSVNPDYFDFNR 68
Query: 74 KTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
T+ VDDLL I+D LG+ V A+ + +I+ E S +I +G
Sbjct: 69 YTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIG 121
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 9 IKVQGLNLHIAEAGADAHVVVFLHG-FPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSD 67
+ V G+ LH + G H V+ L G + Q+ + F +A D RGYG S
Sbjct: 7 VAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSR 66
Query: 68 PPAEPEKTS-FQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
PP F+ D + ++ L KV L+ G +TA + A ++ + ++ G
Sbjct: 67 PPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWG 126
Query: 127 V 127
Sbjct: 127 A 127
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 2 DQIEHKFIKVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCR 61
D + + + + L++ E G+ + +F HG + + ++ F IA D R
Sbjct: 46 DHFISRRVDIGRITLNVREKGS-GPLXLFFHGITSNSAVFEPLXIRLSDR-FTTIAVDQR 103
Query: 62 GYGLSDPPAEPEKTSFQ--DMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERV 119
G+GLSD P +T ++ D DD+ ++ L LV GA + A ++ + V
Sbjct: 104 GHGLSDKP----ETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLV 159
Query: 120 SGVITL 125
V+ +
Sbjct: 160 RSVVAI 165
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 230 RTLRENFSTPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGS 289
R LR + P V P L++ G+ + + K L P+L ++ +P
Sbjct: 241 RGLRSDL-VPAYRDVTKPVLIVRGESSKLVSAAAL------AKTSRLRPDLPVVVVPGAD 293
Query: 290 HFVQEQSPEEVNQLILTFLN 309
H+V E SPE + I F++
Sbjct: 294 HYVNEVSPEITLKAITNFID 313
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 9 IKVQGLNLHIAEAGADAHVVVFLHG-FPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSD 67
+ V G+ LH + G H V+ L G + Q+ + F +A D RGYG S
Sbjct: 7 VAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSR 66
Query: 68 PPAEPEKTS-FQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
PP F+ D + ++ L KV L+ G +TA + A ++ + ++ G
Sbjct: 67 PPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWG 126
Query: 127 V 127
Sbjct: 127 A 127
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 9 IKVQGLNLHIAEAGADAHVVVFLHG-FPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSD 67
+ V G+ LH + G H V+ L G + Q+ + F +A D RGYG S
Sbjct: 7 VAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSR 66
Query: 68 PPAEPEKTS-FQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
PP F+ D + ++ L KV L+ G +TA + A ++ + ++ G
Sbjct: 67 PPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWADGGITALIAAAKYPSYIHKMVIWG 126
Query: 127 V 127
Sbjct: 127 A 127
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 11/178 (6%)
Query: 28 VVFLHGF---PEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAE--PEKTSFQDM-V 81
VV LHG +WR + +A F +APD G+G S+ P S+ M V
Sbjct: 32 VVLLHGAGPGAHAASNWRPIIPDLAE-NFFVVAPDLIGFGQSEYPETYPGHIMSWVGMRV 90
Query: 82 DDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPPG--PIEFHK 139
+ +L +++H G+ K +V G ++ ER V +G P P E +
Sbjct: 91 EQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELAR 150
Query: 140 YLPEGFYISRWQEPGRAEADFGRLDAKTVVRNIYILFSRSEIPIAPENKEIMDLVSDS 197
L FY P R D + I+ SR E+ PE + I +++ +S
Sbjct: 151 LL--AFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFES 206
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 117/294 (39%), Gaps = 38/294 (12%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVAT-AGFRAIAPDCRGYGLSD--PPAEPEKTSFQDMVDDL 84
++ LHG P + +++ + +A G I D G G S P A + + Q VD+
Sbjct: 57 LIVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNSTHLPDAPADFWTPQLFVDEF 116
Query: 85 LAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPPGPIEFHKYLPEG 144
A+ LG+ + ++ + +G + A++ + SG+++L + P + E
Sbjct: 117 HAVCTALGIERYHVLGQSWGGMLGAEIAVR---QPSGLVSLAICNSPAS----MRLWSEA 169
Query: 145 FYISRWQEPGRAEADFGRLDAK-TVVRNIYI-----LFSRSEIPIAPENKEIMDLVSDST 198
R Q P A R +A T+ Y+ + R + P ++ D V+
Sbjct: 170 AGDLRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQ-- 227
Query: 199 PLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPEVIAVKVPALLIMGDKDYF 258
E + Y + + F + ++ + P+V A P L+I G+ D
Sbjct: 228 ------MEAEPTVYHTMNGPNEFHVVGTLGDWSVIDRL--PDVTA---PVLVIAGEHD-- 274
Query: 259 LKFPGIEDYIRSGKA-KDLVPNLEIIHLPEGSHFVQEQSPEEVNQLILTFLNKH 311
E ++ + D +P++ P SH + PEE ++ FL++H
Sbjct: 275 ------EATPKTWQPFVDHIPDVRSHVFPGTSHCTHLEKPEEFRAVVAQFLHQH 322
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 16 LHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPD--CRGYGLSDPPAEPE 73
L++ G+ V+V HGF +W ++++ +R + D C G D
Sbjct: 11 LNVRVVGSGERVLVLAHGFGTDQSAW-NRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRR 69
Query: 74 KTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
T+ VDDLL ILD LG+ V A+ + +I+ E S +I +G
Sbjct: 70 YTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIG 122
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 7 KFIKVQGLNLH--IAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYG 64
+ KV G+ ++ + +A + + HG P + + + G + D G G
Sbjct: 8 NYAKVNGIYIYYKLCKAPEEKAKLXTXHGGPGXSHDYLLSLRDXTKEGITVLFYDQFGCG 67
Query: 65 LSDPPAEPEKTSFQDMVDDLLAILDHL-GLAKVFLVAKDFGALTAYMFAIQHQERVSGVI 123
S+ P + K + V++ A+ L G KVFL +G A +A+++Q+ + G+I
Sbjct: 68 RSEEP-DQSKFTIDYGVEEAEALRSKLFGNEKVFLXGSSYGGALALAYAVKYQDHLKGLI 126
Query: 124 TLG 126
G
Sbjct: 127 VSG 129
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 113/286 (39%), Gaps = 40/286 (13%)
Query: 27 VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLA 86
V+VFLHGF ++ H + T + I D G+G D + E +F + L
Sbjct: 18 VLVFLHGFLSDSRTY-HNHIEKFTDNYHVITIDLPGHG-EDQSSMDETWNFDYITTLLDR 75
Query: 87 ILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPILPPGPIEFHKYLPEGFY 146
ILD + L G A +AI +S +I + PG E L
Sbjct: 76 ILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLI---LESTSPGIKEEANQLER--- 129
Query: 147 ISRWQEPGRAEA-DFGRLDAKTVVRNIYILF-SRSEIPIAPENKEIMDLVSDSTPLPPWF 204
R + RA+ D ++ LF S+ E+P+ +++ +S S P
Sbjct: 130 --RLVDDARAKVLDIAGIELFVNDWEKLPLFQSQLELPVEIQHQIRQQRLSQS----PHK 183
Query: 205 TEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPEVIAVKVPALLIMGDKDYFLKFPGI 264
+ L YG +G Q+P P + +KVP L++ G+ D KF I
Sbjct: 184 MAKALRDYG-----TG-----QMPNLW-------PRLKEIKVPTLILAGEYDE--KFVQI 224
Query: 265 EDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQSPEEVNQLILTFLNK 310
+ K +L+PN + + H + + +E + +IL FL +
Sbjct: 225 -----AKKMANLIPNSKCKLISATGHTIHVEDSDEFDTMILGFLKE 265
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 16 LHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPD--CRGYGLSDPPAEPE 73
L++ G+ V+V HGF +W ++++ +R + D C G D
Sbjct: 11 LNVRVVGSGERVLVLAHGFGTDQSAW-NRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRR 69
Query: 74 KTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
T+ VDDLL ILD LG+ V A+ + +I+ E S +I +G
Sbjct: 70 YTTLDPYVDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIG 122
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 5 EHKFIKVQGLNLHIAEAG-ADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGY 63
E ++ V L++ + G + + LHG P + + GFR + D RG
Sbjct: 4 EIGYVPVGEAELYVEDVGPVEGPALFVLHGGPGGNAYVLREGLQDYLEGFRVVYFDQRGS 63
Query: 64 GLS-DPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTA 108
G S + P +P + +V+D L + + LG+ + L+A FGA+ A
Sbjct: 64 GRSLELPQDPRLFTVDALVEDTLLLAEALGVERFGLLAHGFGAVVA 109
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 15 NLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEK 74
+ + E+ + ++ +HG + Q+ G +R IAPD G+G S +P++
Sbjct: 14 RIAVRESEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDR 73
Query: 75 T-SFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVP 128
+ S + D + ++ LG+A + G ++ E + G++ G P
Sbjct: 74 SYSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTP 127
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 15 NLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEK 74
+ + E+ + ++ +HG + Q+ G +R IAPD G+G S +P++
Sbjct: 14 RIAVRESEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDR 73
Query: 75 T-SFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVP 128
+ S + D + ++ LG+A + G ++ E + G++ G P
Sbjct: 74 SYSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTP 127
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 15 NLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEK 74
+ + E+ + ++ +HG + Q+ G +R IAPD G+G S +P++
Sbjct: 14 RIAVRESEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDR 73
Query: 75 T-SFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVP 128
+ S + D + ++ LG+A + G ++ E + G++ G P
Sbjct: 74 SYSMEGYADAMTEVMQQLGIADAVVFGWGLGGHIGIEMIARYPE-MRGLMITGTP 127
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAI 87
V+ HGF S R G A AG+ P G+G + PAE ++ D D++A
Sbjct: 52 VLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTT--PAEMAASTASDWTADIVAA 109
Query: 88 LDHL--GLAKVFLVAKDFGALTAYMFAIQHQERVSGVI 123
+ L +F+ G A Q ER +G++
Sbjct: 110 MRWLEERCDVLFMTGLSMGGALTVWAAGQFPERFAGIM 147
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAI 87
V+ HGF S R G A AG+ P G+G + PAE ++ D D++A
Sbjct: 54 VLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTT--PAEMAASTASDWTADIVAA 111
Query: 88 LDHL--GLAKVFLVAKDFGALTAYMFAIQHQERVSGVI 123
+ L +F+ G A Q ER +G++
Sbjct: 112 MRWLEERCDVLFMTGLSMGGALTVWAAGQFPERFAGIM 149
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 10 KVQGLNLHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPP 69
+VQ + G A V+FLHG + ++W +VG+ G A+A D G+G S
Sbjct: 66 RVQAGAISALRWGGSAPRVIFLHGGGQNAHTWDTVIVGL---GEPALAVDLPGHGHS-AW 121
Query: 70 AEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVPI 129
E S Q + L +L L F+V G LTA A + V ++ + V
Sbjct: 122 REDGNYSPQLNSETLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDV-- 179
Query: 130 LPPGPIEFHKYL 141
P ++ H L
Sbjct: 180 -TPSALQRHAEL 190
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 16 LHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPD--CRGYGLSDPPAEPE 73
L++ G+ VVV HGF +W +++ T R + D C G D
Sbjct: 8 LNVRVVGSGERVVVLSHGFGTDQSAW-SRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRR 66
Query: 74 KTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
+ VDDLLAILD L + + V A+ + +I+ + + ++ +G
Sbjct: 67 YDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIG 119
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 18 IAEAGADAHVVVFLHG---FPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEK 74
IA DA +V LHG WY + ++ +R A D G P
Sbjct: 60 IASGPEDAPPLVLLHGALFSSTXWYP----NIADWSSKYRTYAVDIIGDKNKSIPENVSG 115
Query: 75 TSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERV-SGVITLGVPILPPG 133
T D + LL + D+LG+ K + G L F ++ ERV S I P
Sbjct: 116 TR-TDYANWLLDVFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPAETFLPF 174
Query: 134 PIEFHKY 140
+F+KY
Sbjct: 175 HHDFYKY 181
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 236 FSTPEVIAVKVPALLIMGDKDYFLKFPGIEDYIRSGKAKDLVPNLEIIHLPEGSHFVQEQ 295
F+ E+ + +VP LL++G+ + + + +A VP++E + H + +
Sbjct: 237 FTDEELRSARVPILLLLGEHEVIY-----DPHSALHRASSFVPDIEAEVIKNAGHVLSXE 291
Query: 296 SPEEVNQLILTFLN 309
P VN+ + F N
Sbjct: 292 QPTYVNERVXRFFN 305
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 16 LHIAEAGADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPD--CRGYGLSDPPAEPE 73
L++ G+ VVV HGF +W +++ T R + D C G D
Sbjct: 10 LNVRVVGSGERVVVLSHGFGTDQSAW-SRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRR 68
Query: 74 KTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLG 126
+ VDDLLAILD L + + V A+ + +I+ + + ++ +G
Sbjct: 69 YDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIG 121
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 9 IKVQGLNLHIAEA----GADAHVVVFLHGFPEIWYSWRH--QMVGVATAGFRAIAPDCRG 62
I+VQG L EA G V+ LHG +W++ + +A AG+RA+A D G
Sbjct: 12 IQVQGQALFFREALPGSGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPG 71
Query: 63 YGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGV 122
G S A P L A++D L L +++ + + F ++ G
Sbjct: 72 LGHSKEAAAPAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAPGSQLPGF 131
Query: 123 ITLGVPILP 131
VP+ P
Sbjct: 132 ----VPVAP 136
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 39 YSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVFL 98
+ W Q+ + T FR + D RG+G S P P + + +D+L +LD L + +
Sbjct: 41 HXWDAQLPAL-TRHFRVLRYDARGHGASSVP--PGPYTLARLGEDVLELLDALEVRRAHF 97
Query: 99 VAKDFGALTAYMFAIQHQERVSGVI 123
+ G + A+ +R+ ++
Sbjct: 98 LGLSLGGIVGQWLALHAPQRIERLV 122
>pdb|3BRY|A Chain A, Crystal Structure Of The Ralstonia Pickettii Toluene
Transporter Tbux
pdb|3BRY|B Chain B, Crystal Structure Of The Ralstonia Pickettii Toluene
Transporter Tbux
Length = 441
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 113 IQHQERVSGVIT---LGVPILPPGPIEFHKYLPEGFYISRWQEPGR 155
+ Q RVSG + LGVP L G I+F + P G + W GR
Sbjct: 177 LAGQGRVSGTLVPTLLGVPGLSGGYIDFSRNAPVGGGVQAWGIGGR 222
>pdb|3OUR|A Chain A, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|C Chain C, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|E Chain E, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|G Chain G, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
Length = 435
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 48/243 (19%), Positives = 100/243 (41%), Gaps = 30/243 (12%)
Query: 15 NLHIAEAGADAHVVVFLHGF----PEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPA 70
+LH+ VV+ G ++W +R + A P GY P
Sbjct: 203 HLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSV-GYSSKYPLT 261
Query: 71 EPEKTSFQDMVDDLLAI--LDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVP 128
E Q ++++L +I +DH +V L+ FG + QE++ + LG P
Sbjct: 262 EDYSRLHQAVLNELFSIPYVDH---HRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAP 318
Query: 129 I--LPPGPIEFHKYLPEGFYISRWQEPGRAEADF----GRLDAKTVVRNIYILFSRSEIP 182
I + P + + +P+ + G++ D G++ A ++ ++ ++++P
Sbjct: 319 IHDIFASPQKLQQ-MPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVP 377
Query: 183 IAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPEVI 242
I M L D P+ P +++ + A+ + Y K A ++ +T+ + + +
Sbjct: 378 ILA-----MSLEGD--PVSP-YSDNQMVAFFSTYGK-----AKKISSKTITQGYEQSLDL 424
Query: 243 AVK 245
A+K
Sbjct: 425 AIK 427
>pdb|3MVE|A Chain A, Crystal Structure Of A Novel Pyruvate Decarboxylase
pdb|3MVE|B Chain B, Crystal Structure Of A Novel Pyruvate Decarboxylase
Length = 415
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 48/243 (19%), Positives = 100/243 (41%), Gaps = 30/243 (12%)
Query: 15 NLHIAEAGADAHVVVFLHGF----PEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPA 70
+LH+ VV+ G ++W +R + A P GY P
Sbjct: 183 HLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSV-GYSSKYPLT 241
Query: 71 EPEKTSFQDMVDDLLAI--LDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITLGVP 128
E Q ++++L +I +DH +V L+ FG + QE++ + LG P
Sbjct: 242 EDYSRLHQAVLNELFSIPYVDH---HRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAP 298
Query: 129 I--LPPGPIEFHKYLPEGFYISRWQEPGRAEADF----GRLDAKTVVRNIYILFSRSEIP 182
I + P + + +P+ + G++ D G++ A ++ ++ ++++P
Sbjct: 299 IHDIFASPQKLQQ-MPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVP 357
Query: 183 IAPENKEIMDLVSDSTPLPPWFTEEDLAAYGALYEKSGFRTALQVPYRTLRENFSTPEVI 242
I M L D P+ P +++ + A+ + Y K A ++ +T+ + + +
Sbjct: 358 ILA-----MSLEGD--PVSP-YSDNQMVAFFSTYGK-----AKKISSKTITQGYEQSLDL 404
Query: 243 AVK 245
A+K
Sbjct: 405 AIK 407
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 22 GADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPP-------AEPEK 74
G+ +V HGF W+H +V +R + D G G ++P + E
Sbjct: 16 GSGEATIVLGHGFGTDQSVWKH-LVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEG 74
Query: 75 TSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITL 125
SF DL+AIL+ L + V A+ + ++ + S ++ +
Sbjct: 75 YSF-----DLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI 120
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 22 GADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPP-------AEPEK 74
G+ +V HGF W+H +V +R + D G G ++P + E
Sbjct: 14 GSGEATIVLGHGFGTDQSVWKH-LVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEG 72
Query: 75 TSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITL 125
SF DL+AIL+ L + V A+ + ++ + S ++ +
Sbjct: 73 YSF-----DLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI 118
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 22 GADAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPP-------AEPEK 74
G+ +V HGF W+H +V +R + D G G ++P + E
Sbjct: 32 GSGEATIVLGHGFGTDQSVWKH-LVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEG 90
Query: 75 TSFQDMVDDLLAILDHLGLAKVFLVAKDFGALTAYMFAIQHQERVSGVITL 125
SF DL+AIL+ L + V A+ + ++ + S ++ +
Sbjct: 91 YSF-----DLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI 136
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDC--RGYGLS--------------DPPAE 71
V+FLHG + + W G+ ++ + I P R L+ P ++
Sbjct: 26 VIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQ 85
Query: 72 PEKTSFQDMVDDLLAILDH---LGLAKVFLVAKDF---GALTAYMFAIQHQERVSGVITL 125
+++ + +++ A++D G+ ++ F GAL+ Y A+ Q++++GV L
Sbjct: 86 EDESGIKQAAENIKALIDQEVKNGIPSNRIILGGFSQGGALSLYT-ALTTQQKLAGVTAL 144
Query: 126 G--VPI---LPPGPI 135
+P+ P GPI
Sbjct: 145 SCWLPLRASFPQGPI 159
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 28 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAI 87
V+ +HGF +S R A AG+ P +G+G + E+T+F D V ++
Sbjct: 43 VLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHY--EDMERTTFHDWV---ASV 97
Query: 88 LDHLGLAK-----VFLVAKDFGALTAYMFAIQHQERVSGVITLGVPI 129
+ G K +F+ G T ++ +H + G++ + +
Sbjct: 98 EEGYGWLKQRCQTIFVTGLSMGG-TLTLYLAEHHPDICGIVPINAAV 143
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 285 LPEGSHFVQEQSPEEVNQLILTFLNKH 311
LP+ H V E +P++V + + TFL +H
Sbjct: 268 LPQCGHAVHEDAPDKVAEAVATFLIRH 294
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 285 LPEGSHFVQEQSPEEVNQLILTFLNKH 311
LP+ H V E +P++V + + TFL +H
Sbjct: 274 LPQCGHAVHEDAPDKVAEAVATFLIRH 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,015,315
Number of Sequences: 62578
Number of extensions: 444392
Number of successful extensions: 1226
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 174
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)