Query 021425
Match_columns 312
No_of_seqs 230 out of 1626
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 100.0 8.6E-62 1.9E-66 410.0 19.8 282 1-306 33-336 (370)
2 KOG1092 Ypt/Rab-specific GTPas 100.0 4E-46 8.6E-51 326.4 13.7 246 2-309 187-447 (484)
3 smart00164 TBC Domain in Tre-2 100.0 3.3E-42 7.2E-47 290.4 18.1 196 1-274 2-198 (199)
4 KOG2058 Ypt/Rab GTPase activat 100.0 1.8E-42 3.8E-47 312.8 17.4 175 105-303 195-370 (436)
5 KOG1091 Ypt/Rab-specific GTPas 100.0 2.5E-39 5.3E-44 292.7 15.8 266 9-306 28-337 (625)
6 PF00566 RabGAP-TBC: Rab-GTPas 100.0 8.9E-37 1.9E-41 260.0 20.9 170 104-300 44-214 (214)
7 KOG2223 Uncharacterized conser 100.0 7.4E-37 1.6E-41 268.5 14.7 178 105-309 354-533 (586)
8 COG5210 GTPase-activating prot 100.0 9E-37 1.9E-41 289.4 16.5 223 2-308 211-435 (496)
9 KOG2222 Uncharacterized conser 100.0 9.2E-31 2E-35 232.7 14.7 214 2-302 169-383 (848)
10 KOG2224 Uncharacterized conser 100.0 1.3E-30 2.7E-35 229.5 12.3 234 2-302 434-698 (781)
11 KOG1093 Predicted protein kina 100.0 9.1E-30 2E-34 231.0 16.1 180 106-309 390-569 (725)
12 KOG4347 GTPase-activating prot 99.9 8.8E-28 1.9E-32 221.5 8.9 219 1-309 200-418 (671)
13 KOG2197 Ypt/Rab-specific GTPas 99.9 5E-26 1.1E-30 212.3 7.0 228 9-301 181-409 (488)
14 KOG4436 Predicted GTPase activ 99.9 3.6E-25 7.8E-30 207.6 12.6 178 105-308 620-799 (948)
15 KOG2595 Predicted GTPase activ 99.9 1.3E-24 2.8E-29 186.6 12.4 175 107-306 97-273 (395)
16 KOG1102 Rab6 GTPase activator 99.9 2.5E-25 5.4E-30 203.9 8.3 176 107-309 186-362 (397)
17 KOG2221 PDZ-domain interacting 99.8 6.4E-21 1.4E-25 154.5 2.9 129 103-249 139-267 (267)
18 KOG4436 Predicted GTPase activ 99.6 1.2E-15 2.6E-20 144.1 12.4 182 105-309 226-415 (948)
19 KOG3636 Uncharacterized conser 99.6 1.4E-14 3E-19 129.2 12.3 171 107-305 67-239 (669)
20 KOG2801 Probable Rab-GAPs [Int 98.4 8.8E-06 1.9E-10 70.0 14.3 144 133-298 109-254 (559)
21 KOG1648 Uncharacterized conser 98.1 3.1E-08 6.8E-13 90.1 -9.0 139 107-273 607-745 (813)
22 PF14961 BROMI: Broad-minded p 96.5 0.056 1.2E-06 55.5 13.7 148 138-303 1086-1247(1296)
23 KOG2224 Uncharacterized conser 86.4 0.26 5.6E-06 45.2 0.5 76 103-195 520-599 (781)
24 KOG2197 Ypt/Rab-specific GTPas 78.5 1.5 3.3E-05 42.0 2.4 45 2-48 76-122 (488)
25 PF08109 Antimicrobial14: Lact 44.3 17 0.00037 19.4 1.4 16 152-167 3-18 (31)
26 COG5460 Uncharacterized conser 38.0 34 0.00074 23.6 2.4 18 154-171 51-68 (82)
27 PF12854 PPR_1: PPR repeat 24.0 1.3E+02 0.0029 16.8 3.0 31 238-268 2-32 (34)
28 PRK10878 hypothetical protein; 24.0 1E+02 0.0022 21.2 2.9 24 213-236 22-45 (72)
29 PF10815 ComZ: ComZ; InterPro 23.2 1.8E+02 0.004 18.6 3.6 39 218-257 6-44 (56)
30 PF11395 DUF2873: Protein of u 21.6 1.8E+02 0.004 16.9 3.3 8 264-271 5-12 (43)
31 PF13041 PPR_2: PPR repeat fam 21.4 1.4E+02 0.0031 18.0 3.1 27 227-254 23-49 (50)
32 PF03556 Cullin_binding: Culli 20.4 1.7E+02 0.0037 22.1 3.9 30 244-273 28-57 (117)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=8.6e-62 Score=410.02 Aligned_cols=282 Identities=54% Similarity=0.940 Sum_probs=252.5
Q ss_pred CCCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccC
Q 021425 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (312)
Q Consensus 1 ~~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
++|+|+++++|+.+|++|||++|+++..|...++++|..|..+.++....|...... .-..+
T Consensus 33 ~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~------------------~~v~~ 94 (370)
T KOG4567|consen 33 FYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNS------------------KKVDS 94 (370)
T ss_pred hcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccc------------------ccccc
Confidence 479999888999999999999999999999999999999999999988766531110 00111
Q ss_pred ccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcc----------------------hhhHHHH
Q 021425 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFA----------------------TSNQEAL 138 (312)
Q Consensus 81 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~----------------------~~~~~~L 138 (312)
..+..++||+.++.+.|++++++.+++.||++||.||.|+..+|+...... +-.....
T Consensus 95 ~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~ 174 (370)
T KOG4567|consen 95 NDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAA 174 (370)
T ss_pred CcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHH
Confidence 225789999999999999999999999999999999999999999865443 1233446
Q ss_pred HHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHH
Q 021425 139 KNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRL 218 (312)
Q Consensus 139 ~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (312)
.|||++||+.||.+||+||||+|+||+++|+.+|++.++..++|+|||.||..+|.+++++|...+|++..|++..+..+
T Consensus 175 erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~ 254 (370)
T KOG4567|consen 175 ERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRL 254 (370)
T ss_pred HHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 021425 219 SQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKD 298 (312)
Q Consensus 219 ~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ 298 (312)
..+|+++|-+||+||++. ++.|++|++||+.+|++.+||+++++||||.+|+++.++ ++++++ |+||++..|+.
T Consensus 255 ~~~lk~~D~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rf-d~Ll~i----Ccsmlil~Re~ 328 (370)
T KOG4567|consen 255 SELLKKHDEELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRF-DFLLYI----CCSMLILVRER 328 (370)
T ss_pred HHHHHHhhHHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhh-HHHHHH----HHHHHHHHHHH
Confidence 999999999999999997 999999999999999999999999999999999998763 555555 99999999999
Q ss_pred HHHHHHhh
Q 021425 299 AMFLELRN 306 (312)
Q Consensus 299 ll~~~~~~ 306 (312)
|++-|+..
T Consensus 329 il~~DF~~ 336 (370)
T KOG4567|consen 329 ILEGDFTV 336 (370)
T ss_pred HHhcchHH
Confidence 99988764
No 2
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-46 Score=326.41 Aligned_cols=246 Identities=32% Similarity=0.582 Sum_probs=222.5
Q ss_pred CCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccCc
Q 021425 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (312)
Q Consensus 2 ~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
.|||.. .|+.+|++|+|++|+++..+...++.++..|.+++.++......
T Consensus 187 ~Gvp~~--~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~---------------------------- 236 (484)
T KOG1092|consen 187 NGVPSK--MRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTN---------------------------- 236 (484)
T ss_pred CCCCcc--ccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCC----------------------------
Confidence 699998 99999999999999999999999999999999999988653221
Q ss_pred cCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHH
Q 021425 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (312)
Q Consensus 82 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i 161 (312)
.-.+.++.+||..|++|+.|..++|+.+ ..++.+.|||++|+.++|..||+||.+++
T Consensus 237 ------------------~~~~~d~~rQI~id~prm~p~~~l~q~~-----~vq~~lerIl~iwairhpAsGyvqgindl 293 (484)
T KOG1092|consen 237 ------------------GDEDQDTWRQIPIDIPRMNPHIPLFQQK-----IVQEMLERILYIWAIRHPASGYVQGINDL 293 (484)
T ss_pred ------------------ccccCccccccccCCCCCCccccchhhH-----HHHHHHHHHHHHHHHhcccccccccceee
Confidence 0023357889999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHHHcCCC---------------CccccchhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhc
Q 021425 162 LAPLYYVFKSDP---------------DEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHD 226 (312)
Q Consensus 162 ~~~ll~~~~~~~---------------~~~~~~~~E~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 226 (312)
+.|++.++..+. ..++...+|+|||||+.+|++.+.++|.. .++||+...+.++.+++..|
T Consensus 294 vtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtf----aQpGIq~kV~~L~eLv~RID 369 (484)
T KOG1092|consen 294 VTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTF----AQPGIQRKVKNLKELVQRID 369 (484)
T ss_pred echhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhh----cChhHHHHHHHHHHHHHHhc
Confidence 999998876421 11245779999999999999999999987 78999999999999999999
Q ss_pred HHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021425 227 EELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRN 306 (312)
Q Consensus 227 p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~~ 306 (312)
+++++||+++ |++...|++||+.+||.||||+..++|+||.|+++++|+..+++|| |+|+|+..+++|+++|+++
T Consensus 370 ~~~hkHlq~~-gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~dgf~~FhvYv----cAAFL~kW~~eL~e~DFQ~ 444 (484)
T KOG1092|consen 370 EPLHKHLQEH-GVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPDGFNEFHVYV----CAAFLLKWSSELMENDFQE 444 (484)
T ss_pred HHHHHHHHHh-chHHHHHHHHHHHHHHHhhccchhHHHHHHHhhcCccchHHHHHHH----HHHHHHHHHHHHHHhHHHH
Confidence 9999999997 9999999999999999999999999999999999999887777666 9999999999999999999
Q ss_pred hhc
Q 021425 307 VII 309 (312)
Q Consensus 307 ~~~ 309 (312)
+++
T Consensus 445 ~il 447 (484)
T KOG1092|consen 445 LIL 447 (484)
T ss_pred HHH
Confidence 874
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=3.3e-42 Score=290.39 Aligned_cols=196 Identities=34% Similarity=0.698 Sum_probs=169.8
Q ss_pred CCCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccC
Q 021425 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (312)
Q Consensus 1 ~~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
.+|||+. +|+.||+.++|+.+...+. .+..|.+++++....
T Consensus 2 ~~Gip~~--~R~~vW~~ll~~~~~~~~~-------~~~~Y~~l~~~~~~~------------------------------ 42 (199)
T smart00164 2 RKGVPPS--LRGVVWKLLLNAQPMDTSA-------DKDLYSRLLKETAPK------------------------------ 42 (199)
T ss_pred CCCCCHH--HHHHHHHHHhCCchhhhcc-------cchHHHHHHHhhcCC------------------------------
Confidence 4799997 9999999999997754332 367888877654211
Q ss_pred ccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHH
Q 021425 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (312)
Q Consensus 81 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~ 160 (312)
+.+..++|++||.||+|++++|+.... ..++.|.|||.+|+.+||++||||||++
T Consensus 43 ----------------------~~~~~~~I~~Dv~Rt~~~~~~f~~~~~---~~~~~L~~IL~~~~~~~p~~gY~QGm~~ 97 (199)
T smart00164 43 ----------------------DKSIVHQIEKDLRRTFPEHSFFQDKEG---PGQESLRRVLKAYALYNPEVGYCQGMNF 97 (199)
T ss_pred ----------------------ChhhHHHHhcccCCCCCCchhhcCCCc---ccHHHHHHHHHHHHHHCCCCceeccHHH
Confidence 122567999999999999999987533 6899999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCccccchhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHh-hcCC
Q 021425 161 ILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEV-TTKV 239 (312)
Q Consensus 161 i~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~-~~~i 239 (312)
||++++.++.+ |++|||||.++|++....+. ..+.+++...+..++.+++..+|+||+||++ . ++
T Consensus 98 i~~~ll~~~~~----------e~~af~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~-~i 163 (199)
T smart00164 98 LAAPLLLVMPD----------EEDAFWCLVKLMERYGPNFY---LPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKL-GI 163 (199)
T ss_pred HHHHHHHhcCC----------HHHHHHHHHHHHHHhCcccC---CCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhc-CC
Confidence 99999999975 99999999999998766542 3467789999999999999999999999995 6 89
Q ss_pred ChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCC
Q 021425 240 NPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPD 274 (312)
Q Consensus 240 ~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~ 274 (312)
++..|+++|++++|++++|++.++||||.++++|.
T Consensus 164 ~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 164 DPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred CchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999864
No 4
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-42 Score=312.81 Aligned_cols=175 Identities=27% Similarity=0.455 Sum_probs=162.5
Q ss_pred HHHHHHHHHHhhhCCCC-ccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHH
Q 021425 105 EIMEQIDRDVKRTHPDM-HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEA 183 (312)
Q Consensus 105 ~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~ 183 (312)
.+.++|+.|+.||||++ +.|..+.+ .++..|+|||.+|+.+||.+|||||||.+||++|+++.. |+
T Consensus 195 ~~~~qI~~DL~RTfP~n~~~~~~~~~---~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~----------EE 261 (436)
T KOG2058|consen 195 PVVKQIKLDLPRTFPDNFKGFDSEDS---DGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPS----------EE 261 (436)
T ss_pred hHHHHHHhccccccCCCcccCCCCCc---hHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCC----------hH
Confidence 47899999999999999 88988765 668999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHH
Q 021425 184 DTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSL 263 (312)
Q Consensus 184 ~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~ 263 (312)
+||||+..+++++.+.|.. .++.|.+....+++.+++..+|+|+.||... +++..+++++||+|+|+..+|.++++
T Consensus 262 ~AFW~Lv~iie~~lp~Yyt---~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~-~~~~~l~t~~wfLt~f~d~lP~~t~L 337 (436)
T KOG2058|consen 262 DAFWMLVALIENYLPRYYT---PNLIGSQVDQKVLRELLREKLPKLSLHLEGN-GVDASLETLPWFLTLFVDILPSETVL 337 (436)
T ss_pred HHHHHHHHHHHHhchhhcC---chhhhhhccHHHHHHHHHHHCHHHHHhhhhc-CCCeeeeehhhhHHHhcccccHHHHH
Confidence 9999999999998777654 4899999999999999999999999999996 89999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 021425 264 HIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLE 303 (312)
Q Consensus 264 riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~ 303 (312)
||||++|++|. .++|++ |+|++..+++++++.+
T Consensus 338 rIwD~~f~eGs---kvlfr~----Alai~k~~ee~il~~~ 370 (436)
T KOG2058|consen 338 RIWDCLFYEGS---KVLFRV----ALAILKKHEEEILKED 370 (436)
T ss_pred HHHHHHHhccc---HHHHHH----HHHHHHHhHHHHhcCC
Confidence 99999999876 778888 9999999999998653
No 5
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-39 Score=292.68 Aligned_cols=266 Identities=29% Similarity=0.512 Sum_probs=220.0
Q ss_pred CChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccCccCCCCCC
Q 021425 9 GIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHP 88 (312)
Q Consensus 9 ~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (312)
..|+.+|+++||++|.+...|...+++.+..|..+++.++.+|+.... ..++....++|
T Consensus 28 ~~Rgv~Wrl~L~vLp~~~ss~id~~~~~ra~~r~~r~~~L~dPh~~k~---------------------~~s~d~~idnP 86 (625)
T KOG1091|consen 28 NLRGVRWRLLLGVLPSENSSWIDNLRRLRANYRRLRRRLLIDPHNLKE---------------------NHSPDLPIDNP 86 (625)
T ss_pred hhhhHHHHHhheecCCCchhHHHHHHHHhhhhhccccccccCcccccc---------------------ccCCCcccCCc
Confidence 489999999999999999999999999999999999999888775321 12344568899
Q ss_pred CCCCCCCcccccCCCHHHHHHHHHHHhhhCCCC-ccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHH
Q 021425 89 LSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM-HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYY 167 (312)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~ 167 (312)
||.+++|.|+++|.|.++.+.|.+||.||||++ .+|+.+ ..+..|++||..||..||.+||.||||++.||+++
T Consensus 87 LSq~~~S~W~rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~-----~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~f 161 (625)
T KOG1091|consen 87 LSQNPQSVWNRFFRDAELEKTIDQDVSRTFPEHSLFFQSP-----EVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLF 161 (625)
T ss_pred cccCCCchhhhhcCcHHHHHhhcchhhccCcchhhhhcCc-----hhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhh
Confidence 999999999999999999999999999999999 899988 89999999999999999999999999999999999
Q ss_pred HHcCCCCc--------------------cccchhHHHHH--HHHHHHHhhhhhhhc--------------------cccc
Q 021425 168 VFKSDPDE--------------------EFSVSAEADTF--FCFVELLSGFRDNFC--------------------QQLD 205 (312)
Q Consensus 168 ~~~~~~~~--------------------~~~~~~E~~af--~~f~~l~~~~~~~~~--------------------~~~~ 205 (312)
|..-|... .+..+.+.+++ -+|+.+|..-..+|. ..+.
T Consensus 162 Vl~~D~q~l~h~se~~~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~ 241 (625)
T KOG1091|consen 162 VLHVDNQALLHVSESLFDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALM 241 (625)
T ss_pred heehhHHHHHHHHHhhhhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhc
Confidence 98765321 13445566666 467777653222211 0111
Q ss_pred cchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHH-HhhcCCCCCCcchhHHH
Q 021425 206 NSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWD-TLLSDPDGPQVGLMFFL 284 (312)
Q Consensus 206 ~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD-~~l~~~~~~~~~~~~il 284 (312)
...+.+......+..+|.+.|+.|+.||.+. ++.|++|.+||++.||.||||+.+++.+|| ++++++.. .-++
T Consensus 242 ~~l~~v~e~~~~~~~lL~~~D~~Lh~HL~~l-~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr-----~~Lv 315 (625)
T KOG1091|consen 242 PGLPPVFEANFAQYHLLAKVDKSLHSHLVEL-GIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPR-----GILV 315 (625)
T ss_pred ccchhHHHHhhhhhhhhhhccHHHHHHHHhc-CCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCch-----HHHH
Confidence 2234455566678899999999999999997 999999999999999999999999999999 77886442 2335
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021425 285 FIFSCLILLILWKDAMFLELRN 306 (312)
Q Consensus 285 ~~~~~a~l~~~~~~ll~~~~~~ 306 (312)
.|+++|||+++|+.|+..+...
T Consensus 316 ~~m~VsmLL~IRd~Llss~~~t 337 (625)
T KOG1091|consen 316 ACMFVSMLLYIRDSLLSSEYQT 337 (625)
T ss_pred HHHHHHHHHHHHHHHHHhcchh
Confidence 6779999999999999888766
No 6
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=8.9e-37 Score=259.96 Aligned_cols=170 Identities=41% Similarity=0.753 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHH
Q 021425 104 SEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEA 183 (312)
Q Consensus 104 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~ 183 (312)
.+..++|.+|+.||+++...+..+ ..++.|.+||.+|+..+|++||+|||++|+++++.++.+ |+
T Consensus 44 ~~~~~~I~~Dv~rt~~~~~~~~~~-----~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~----------e~ 108 (214)
T PF00566_consen 44 NKIFEQIDKDVNRTFPNSFLFKNE-----QNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLD----------EE 108 (214)
T ss_dssp HTCHHHHHHHHCTSSTSCCCSTTH-----HHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSH----------HH
T ss_pred chHHHHHHHhhhhhcccchhhhhc-----chHHHHHHHHHHhccccccccccchhhhhhhhhhhhccc----------cc
Confidence 345889999999999966666665 899999999999999999999999999999999987776 99
Q ss_pred HHHHHHHHHHh-hhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhH
Q 021425 184 DTFFCFVELLS-GFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADS 262 (312)
Q Consensus 184 ~af~~f~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~ 262 (312)
+|||||+++|. ...+.|.. +.+++...+..++.+++.++|+|++||++. ++++..|+.+|+.|+|++++|.+.+
T Consensus 109 ~af~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~-~~~~~~~~~~w~~~lF~~~l~~~~~ 183 (214)
T PF00566_consen 109 EAFWCFVQLLNYYLPDFFQP----NFKGLQKILKIFEQLLKKHDPELYNHLKQL-GVDPEIYAFPWFLTLFSRSLPFDDV 183 (214)
T ss_dssp HHHHHHHHHHTHHGGGGTST----THHHHHHHHHHHHHHHHHHTHHHHHHHHHT-T-GGHHHHHHHHHTTTTTTS-HHHH
T ss_pred chhccccchhcccccccccc----cccccchhhhhHHHHHHhhhhhhhhhhhhh-hhhhhhhhhhhhHhhcCCcCCHHHH
Confidence 99999999994 44555543 567899999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 021425 263 LHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAM 300 (312)
Q Consensus 263 ~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll 300 (312)
+|||| ++.+|. ...++++ |+|++...|++||
T Consensus 184 ~~lwD-~l~~g~--~~~l~~~----~lail~~~~~~il 214 (214)
T PF00566_consen 184 LRLWD-FLLEGY--KFFLFFI----ALAILKYLRDQIL 214 (214)
T ss_dssp HHHHH-HHHHCT--THHHHHH----HHHHHHHTHHHHH
T ss_pred HHHHH-HHHcCC--CcHHHHH----HHHHHHHHHHHhC
Confidence 99999 666544 2225666 9999999999986
No 7
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.4e-37 Score=268.47 Aligned_cols=178 Identities=25% Similarity=0.393 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHH
Q 021425 105 EIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEAD 184 (312)
Q Consensus 105 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~ 184 (312)
....+|+.|+.||||+..+|+.+ ++..+.|..+|.+|+.+.|++||+|||..|+|++++.++ +++
T Consensus 354 ~sv~~i~LDisrTfpsl~iFqk~----GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd-----------~~~ 418 (586)
T KOG2223|consen 354 ASVELIKLDISRTFPSLSIFQKG----GPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMD-----------LAD 418 (586)
T ss_pred cchhheeechhccCcceeeeccC----CchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCC-----------cHH
Confidence 35789999999999999999987 378999999999999999999999999999999999998 899
Q ss_pred HHHHHHHHHhhh--hhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhH
Q 021425 185 TFFCFVELLSGF--RDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADS 262 (312)
Q Consensus 185 af~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~ 262 (312)
||.+|.+|+++- ...|.. +.+.+...+..|+..+++..|+|+.||.+. ++.|.+|++.|+.++|+..+|++..
T Consensus 419 AFiafANLLdkp~q~Aff~~----d~s~m~~yf~tfe~~leenlp~L~~Hl~kl-~l~PDiylidwiftlyskslpldla 493 (586)
T KOG2223|consen 419 AFIAFANLLDKPCQQAFFRV----DHSSMLSYFATFEVFLEENLPKLFTHLKKL-ELTPDIYLIDWIFTLYSKSLPLDLA 493 (586)
T ss_pred HHHHHHHHhccHHHHHHHhc----CcHHHHHHHHHHHHHHHhccHHHHHHHHhc-cCCCchhhHHHHHHHHhccCChHHh
Confidence 999999999863 333433 677788999999999999999999999986 9999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021425 263 LHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVII 309 (312)
Q Consensus 263 ~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~~~~~ 309 (312)
+||||+|+.+|+ +++|+. ++++|.+.+..|+.||+..+.+
T Consensus 494 cRIwDvy~rdge---eFlfr~----~lgIlklyepkLl~mDf~~~~q 533 (586)
T KOG2223|consen 494 CRIWDVYCRDGE---EFLFRT----ALGILKLYEPKLLVMDFIHVAQ 533 (586)
T ss_pred hhhhheeeecch---HHHHHH----HHHHHHHccchHhhhhHHHHHH
Confidence 999999999988 788998 9999999999999999998865
No 8
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=9e-37 Score=289.37 Aligned_cols=223 Identities=32% Similarity=0.565 Sum_probs=187.3
Q ss_pred CCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccCc
Q 021425 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (312)
Q Consensus 2 ~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+|||++ +|+.||..++|..+. .......|..+.+........
T Consensus 211 ~gip~~--~r~~vw~~~~~~~~~--------~~~~~~~y~~~~~~~~~~~~~---------------------------- 252 (496)
T COG5210 211 KGIPNE--LRGDVWEFLLGIGFD--------LDKNPGLYERLLNLHREAKIP---------------------------- 252 (496)
T ss_pred hcCChH--hhhhhHHHHhccchh--------hccCchHHHHHHHHHHhcCCC----------------------------
Confidence 699998 999999999998773 333445555555433211000
Q ss_pred cCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHH
Q 021425 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (312)
Q Consensus 82 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i 161 (312)
......+|++||.||+|.+..|+.+.+ ...+.|.|||.+|+.+||++||||||+++
T Consensus 253 ---------------------~~~~~~~i~~Dl~rt~~~~~~f~~~~s---~~~~~L~rvL~ays~~~p~vgY~QgMn~l 308 (496)
T COG5210 253 ---------------------TQEIISQIEKDLSRTFPDNSLFQTEIS---IRAENLRRVLKAYSLYNPEVGYVQGMNFL 308 (496)
T ss_pred ---------------------cHHHHHHHHccccccccccccccCccc---ccHHHHHHHHHHHHhcCCCCceeccHHHH
Confidence 013688999999999999999998743 33345999999999999999999999999
Q ss_pred HHHHHHHHcCCCCccccchhHHHHHHHHHHHHh-h-hhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCC
Q 021425 162 LAPLYYVFKSDPDEEFSVSAEADTFFCFVELLS-G-FRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKV 239 (312)
Q Consensus 162 ~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i 239 (312)
+|+|+.++.. |++||||+++||. . +...|.. +++|+...+..+..+++..+|+||+||... ++
T Consensus 309 ~a~ll~~~~~----------Ee~AF~~l~~L~~~~~l~~~~~~----~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~-~~ 373 (496)
T COG5210 309 AAPLLLVLES----------EEQAFWCLVKLLKNYGLPGYFLK----NLSGLHRDLKVLDDLVEELDPELYEHLLRE-GV 373 (496)
T ss_pred HHHHHHHhhh----------hHHHHHHHHHHHHhccchhhccc----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 9999999987 9999999999999 3 4444444 889999999999999999999999999997 89
Q ss_pred ChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021425 240 NPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVI 308 (312)
Q Consensus 240 ~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~~~~ 308 (312)
....|+++||+++|.+++|++.++||||++|++|. .+++.+ ++|++...+.+++.++.+.++
T Consensus 374 ~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~---~~l~~~----~~~~l~~~~~~l~~~~~~~~~ 435 (496)
T COG5210 374 VLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS---SMLFQL----ALAILKLLRDKLLKLDSDELL 435 (496)
T ss_pred chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc---HHHHHH----HHHHHHhhhhhhhccCchhHH
Confidence 99999999999999999999999999999999876 666777 999999999999988777654
No 9
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=9.2e-31 Score=232.71 Aligned_cols=214 Identities=25% Similarity=0.407 Sum_probs=184.1
Q ss_pred CCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccCc
Q 021425 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (312)
Q Consensus 2 ~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
.|||+. +|+.+|+.|.|.+. ..++....|.+.++....+
T Consensus 169 ggiphs--lr~~lw~rlsga~~--------kkk~ae~sy~~ilk~~and------------------------------- 207 (848)
T KOG2222|consen 169 GGIPHS--LRAFLWMRLSGALA--------KKKDAETSYEDILKACAND------------------------------- 207 (848)
T ss_pred CCCCcc--hhHHHHHHhhhhhh--------hhccccccHHHHHHHhccc-------------------------------
Confidence 489996 99999999999854 2333445677777655321
Q ss_pred cCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHH
Q 021425 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (312)
Q Consensus 82 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i 161 (312)
...+-.||++|+-|+.|++..|...++ .+.+.|+|||.+.+...|++||||||..|
T Consensus 208 ---------------------k~~~~~qiekdllr~lpnn~cf~k~n~---~gi~~lrrilk~ia~ifpdigycqg~gvi 263 (848)
T KOG2222|consen 208 ---------------------KLMIGKQIEKDLLRILPNNACFSKKNG---EGIEALRRILKCIAFIFPDIGYCQGMGVI 263 (848)
T ss_pred ---------------------ccchhHHHHHHHHHhCCCcceeeCCCC---cchHHHHHHHhhheeecCCcccccCccHH
Confidence 112567999999999999999999887 88999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCccccchhHHHHHHHHHHHHhhh-hhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCC
Q 021425 162 LAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGF-RDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVN 240 (312)
Q Consensus 162 ~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~ 240 (312)
+|.+++.+. |+.|||++..+++.+ .++|... ..-|++..-.+...+++.+.|.|-+.|+.+ .++
T Consensus 264 va~lllf~~-----------ee~afwmmaaiiedilp~nfysq---tllgiqaderv~~~li~~~l~~ldeal~~~-die 328 (848)
T KOG2222|consen 264 VACLLLFCE-----------EENAFWMMAAIIEDILPANFYSQ---TLLGIQADERVMHHLIACHLPDLDEALEDH-DIE 328 (848)
T ss_pred HHHHHHHhc-----------chhHHHHHHHHHHHhcCchhhhh---hHhccchhHHHHHHHHHhccCchhHHHHhc-cce
Confidence 999999998 899999999999975 4455432 677899889999999999999999999997 999
Q ss_pred hhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 021425 241 PQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFL 302 (312)
Q Consensus 241 ~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~ 302 (312)
.++.+..||+|+|+..|.....+||||.||.+|. ..+|++ .++||...+++|..+
T Consensus 329 lslitl~w~ltlf~nv~~~killriwd~~fy~g~---i~ifql----~i~ilkmkeqdi~~i 383 (848)
T KOG2222|consen 329 LSLITLHWFLTLFANVFHMKILLRIWDFFFYEGG---INIFQL----IIGILKMKEQDIKEI 383 (848)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHhheecCc---chhHHH----HHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999865 556777 899999999988765
No 10
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=229.50 Aligned_cols=234 Identities=29% Similarity=0.571 Sum_probs=175.9
Q ss_pred CCCCCCCCChhHHHHHhhCcCCCCCCC--chHHHHHHHHHHHHHHHHhc--cCchhhhhhccccccchhhhhhhcccCcc
Q 021425 2 QGIPDGAGIRSTVWKLLLVYLPPDRGL--WPSELAKKRSQYKHFKDDLL--VNPSEITRRLDKSTIYESEEWKCESSGFL 77 (312)
Q Consensus 2 ~GiP~~~~~R~~vW~~LLg~~~~~~~~--~~~~~~~~~~~Y~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (312)
.||.. ++|+.||++||.+|+.+++. +......+|+.|+.+.++-+ ..|.+...
T Consensus 434 ggid~--sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~~--------------------- 490 (781)
T KOG2224|consen 434 GGIDK--SIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHIA--------------------- 490 (781)
T ss_pred ccchh--hhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH---------------------
Confidence 57777 49999999999999988864 44457899999999987654 33332111
Q ss_pred ccCccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCC
Q 021425 78 SRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQG 157 (312)
Q Consensus 78 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QG 157 (312)
.|++ +.-.++|||.||.++++||..++. ++.+.+++||..||.+||.+||.||
T Consensus 491 ------------------fwkn------vq~tvdkdvvrtdrnn~ff~gddn---pn~e~mk~illn~avyn~~m~ysqg 543 (781)
T KOG2224|consen 491 ------------------FWKN------VQFTVDKDVVRTDRNNPFFCGDDN---PNTESMKNILLNFAVYNPAMGYSQG 543 (781)
T ss_pred ------------------HHhh------eEEEEecceeeccCCCCcccCCCC---CcHHHHHHHHHhheeeccccccccc
Confidence 1111 233678999999999999998866 7889999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCccccchhHHHHHHHHHHHHhhhhhh--------------------------hccccccchhhH
Q 021425 158 MNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDN--------------------------FCQQLDNSVVGI 211 (312)
Q Consensus 158 m~~i~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~~~~~--------------------------~~~~~~~~~~~~ 211 (312)
|++++||.+.-..+ |.++||||+.+|..+.+. |.. ......+
T Consensus 544 msdllapvlcevqn----------esetfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~--sp~d~dm 611 (781)
T KOG2224|consen 544 MSDLLAPVLCEVQN----------ESETFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVC--SPRDEDM 611 (781)
T ss_pred chhhcchhhhhhcc----------ccchhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEe--CCcchhh
Confidence 99999988876666 566666666666533211 111 1123446
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHhhcCCChh-HHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHH
Q 021425 212 RSTITRLSQLLKEHDEELWRHLEVTTKVNPQ-FYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCL 290 (312)
Q Consensus 212 ~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~-~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a 290 (312)
...+..+..+++...|..|+||.+++.-..+ +||.||++++|.|+||-..++|||+..++.-- .=+++..+|+|
T Consensus 612 d~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~airiweacwa~y~-----tdyfhlficla 686 (781)
T KOG2224|consen 612 DHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYL-----TDYFHLFICLA 686 (781)
T ss_pred hHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhh-----HHHHHHHHHHH
Confidence 6777889999999999999999997422222 69999999999999999999999999999422 12334455999
Q ss_pred HHHHHHHHHHHH
Q 021425 291 ILLILWKDAMFL 302 (312)
Q Consensus 291 ~l~~~~~~ll~~ 302 (312)
++...-++++..
T Consensus 687 iiaiy~ddvi~q 698 (781)
T KOG2224|consen 687 IIAIYADDVIAQ 698 (781)
T ss_pred HHHHhhhHHHHh
Confidence 998888877653
No 11
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.97 E-value=9.1e-30 Score=231.04 Aligned_cols=180 Identities=24% Similarity=0.449 Sum_probs=161.2
Q ss_pred HHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHHH
Q 021425 106 IMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADT 185 (312)
Q Consensus 106 ~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~a 185 (312)
+.+||+.|++|+.......... .++++|+|+|.+|+..+|...|.||+..+|+||++...+. |+.|
T Consensus 390 tdrqievdiprchQyd~~lsSp-----~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nn---------e~la 455 (725)
T KOG1093|consen 390 TDRQIEVDIPRCHQYDELLSSP-----KGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNN---------ELLA 455 (725)
T ss_pred chhhhhcccchhhhcccccCCH-----HHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCc---------hHHH
Confidence 5789999999999888877777 8999999999999999999999999999999999987663 9999
Q ss_pred HHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHH
Q 021425 186 FFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHI 265 (312)
Q Consensus 186 f~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~ri 265 (312)
|.|+..++-++..+|..+ | +...++..+..|.++++.+||+|++||..+ |+.+++|+++||+|+|+++||.+.++.+
T Consensus 456 F~~~~~fi~kycq~fflk-d-ns~vikeyLs~f~~l~AfhDpeL~qHl~~~-~f~~eLyAiPwflT~Fshvlpl~kil~L 532 (725)
T KOG1093|consen 456 FACIATFIPKYCQHFFLK-D-NSNVIKEYLSMFSQLLAFHDPELLQHLIDI-GFIPELYAIPWFLTMFSHVLPLHKILHL 532 (725)
T ss_pred HHHHHHHHHHHHHHHHhh-c-CchhHHHHHHHHHHHHHhcCHHHHHHHHHc-CCcHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 999999998887777642 2 345588899999999999999999999997 9999999999999999999999999999
Q ss_pred HHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021425 266 WDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVII 309 (312)
Q Consensus 266 WD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~~~~~ 309 (312)
||.++..+. .+.+.+ ++|++...|+.|+...+.+.+.
T Consensus 533 wD~lml~~~---SFplmi----~vAil~~lR~~LLa~nfne~il 569 (725)
T KOG1093|consen 533 WDNLMLGHS---SFPLMI----GVAILIQLRDPLLACNFNECIL 569 (725)
T ss_pred HHHHhcCCC---ccHHHH----HHHHHHHhhhhhhhCCchhhee
Confidence 999999655 556666 9999999999999988887653
No 12
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.94 E-value=8.8e-28 Score=221.53 Aligned_cols=219 Identities=20% Similarity=0.297 Sum_probs=188.9
Q ss_pred CCCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccC
Q 021425 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (312)
Q Consensus 1 ~~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.|||.+ .|+..|-+..|. ...+..+...|.++.+.....
T Consensus 200 ~~gipe~--~rgeiW~l~sGa--------v~~~l~~~Geygkll~~~~G~------------------------------ 239 (671)
T KOG4347|consen 200 YNGFPED--PRGEIWYLASGA--------VASLLLNPGEYGKLLHSVTGK------------------------------ 239 (671)
T ss_pred HHhcCCC--hHHHHHHhhhHH--------HHHhhcCcHHhhhhhhcccCC------------------------------
Confidence 5799998 999999999997 335666778888877655321
Q ss_pred ccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHH
Q 021425 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (312)
Q Consensus 81 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~ 160 (312)
..-..+.|++|..|..|+++-|+.+ .+...|+|||.+|++.||++||||-||-
T Consensus 240 ----------------------~~~a~eEIE~Dl~rsLpEhpA~Q~e-----~gi~aLR~vL~Aya~~Np~vGYcQaMNI 292 (671)
T KOG4347|consen 240 ----------------------RSVATEEIEPDLGRSLPEHPAFQSE-----PGIAALRRVLTAYAWSNPEVGYCQAMNI 292 (671)
T ss_pred ----------------------cccccccccCCCCCCCCcchhhhCC-----CchhhHHHHHHhhhccCCchhHHHHHHH
Confidence 1124568999999999999999998 8889999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCccccchhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCC
Q 021425 161 ILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVN 240 (312)
Q Consensus 161 i~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~ 240 (312)
+++.++.... |+.|||+++++.+.+.+.|..+ ...|......+++.+++...|.|++|+..+ + .
T Consensus 293 V~s~lll~~~-----------EEeafwll~~lce~~ip~yys~---~vvGtliDQ~vfe~lve~~lP~l~~~~~~l-~-~ 356 (671)
T KOG4347|consen 293 VGSELLLFCK-----------EEEAFWLLSKLCEIYIPDYYSK---TVVGTLIDQSVFEELVEDTLPVLGEHLAVL-G-Q 356 (671)
T ss_pred HHHhhhhhhc-----------cchHHHHHHHHHHHhcccccch---hhhhhHHHHHHHHHHHHHhhhHHHHHhhhh-c-c
Confidence 9999999998 9999999999999887766543 667777778889999999999999999998 6 4
Q ss_pred hhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021425 241 PQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVII 309 (312)
Q Consensus 241 ~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~~~~~ 309 (312)
..+..++||+++|...+|++..+||-|+||.+|. .++|.| ++|++....+.|+...-|++.+
T Consensus 357 l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~---rvlFqi----aLail~~N~~~il~~~dDge~~ 418 (671)
T KOG4347|consen 357 LSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGP---RVLFQI----ALAILKQNAERILSATDDGEAM 418 (671)
T ss_pred cceEeeHHHHHHHHHHcchHHHHHHHhhhhhccc---HHHHHH----HHHHHHhhHHHhcccCCchHHH
Confidence 4568999999999999999999999999999866 667777 9999999999999887776654
No 13
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.92 E-value=5e-26 Score=212.28 Aligned_cols=228 Identities=31% Similarity=0.547 Sum_probs=184.6
Q ss_pred CChhHHHHHhhCcCCCCCCCchHH-HHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccCccCCCCC
Q 021425 9 GIRSTVWKLLLVYLPPDRGLWPSE-LAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEH 87 (312)
Q Consensus 9 ~~R~~vW~~LLg~~~~~~~~~~~~-~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
++|+.+|+.++++++.+.+..... ..+....|...+.+|.....+ .+
T Consensus 181 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~--------------------------------~~ 228 (488)
T KOG2197|consen 181 SLRAEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPE--------------------------------QS 228 (488)
T ss_pred chhhhhhhhhhcccCcccccccccccccccccHhhhhhhheecccc--------------------------------cc
Confidence 499999999999999877643321 122266777777777532211 11
Q ss_pred CCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHH
Q 021425 88 PLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYY 167 (312)
Q Consensus 88 pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~ 167 (312)
+.+.. ..+....|.+||.||.+.+.++..... .....|..||.+|+.+++++||||||+++++|++.
T Consensus 229 ~~~~~----------~~~~~~~i~~dv~rtDr~~~~~~~~~n---~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~ 295 (488)
T KOG2197|consen 229 PESEG----------YLERKSRIEKDVGRTDRSLEFYEGEEN---PHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILI 295 (488)
T ss_pred ccccc----------hhhhhhhhhhhccccchhhhhhhcccc---cCHHHHHHHHhhcccccCccccccCchhhcCccee
Confidence 11110 113456899999999999999998732 24899999999999999999999999999999999
Q ss_pred HHcCCCCccccchhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHH
Q 021425 168 VFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFR 247 (312)
Q Consensus 168 ~~~~~~~~~~~~~~E~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~ 247 (312)
++.+ |.+|||||+.+|.+...+|.. +..|+...+..+..+++..||.+|+||+.. +....+|++|
T Consensus 296 v~~d----------e~~aFwcFv~fm~~~~~nF~~----d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~-d~~~~~f~fr 360 (488)
T KOG2197|consen 296 VMED----------EVEAFWCFVGFMDRLRHNFRI----DQSGMQTQLAQLSSLIQELDPRLYQHLEKL-DAGDLFFCFR 360 (488)
T ss_pred eecC----------chHHHHHHHHHHHHHhhcCcc----ccccHHHHhhhhhhhccccCHHHHhhcccc-CCCccceeee
Confidence 9998 999999999999998888876 788999999999999999999999999986 8887889999
Q ss_pred HHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 021425 248 WITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMF 301 (312)
Q Consensus 248 W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~ 301 (312)
|+...|.|+|..++++++|+.+.+.-... .+ ..+++.|++-...+.++.
T Consensus 361 ~l~v~frrEf~~ed~l~LWEvlw~~~~~~-~f----~~~~~~~~l~~~~~~l~~ 409 (488)
T KOG2197|consen 361 MLLVPFRREFEFEDSLRLWEVLWTDLPSP-HF----HLYVAPAILNKDPQTLME 409 (488)
T ss_pred hhhcccccccccccHHHHHHHHHhcCccc-hH----HHHHHHhhhhcchHHHHh
Confidence 99999999999999999999999964432 33 345599999887777765
No 14
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.92 E-value=3.6e-25 Score=207.58 Aligned_cols=178 Identities=21% Similarity=0.350 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHH
Q 021425 105 EIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEAD 184 (312)
Q Consensus 105 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~ 184 (312)
+....|..|.-||||++++|...-+ .++..+.++|.+|+..+|++|||||...+|+++++.+. |+.
T Consensus 620 e~qhAi~idlgrtfp~h~~~~~qlg---~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~-----------e~~ 685 (948)
T KOG4436|consen 620 EQQHAILIDLGRTFPTHPYFSDQLG---LGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS-----------EEN 685 (948)
T ss_pred HHHHHHHHhhccccCCCHHHHhhcc---ccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc-----------hhh
Confidence 3467899999999999999998755 89999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHhh--hhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhH
Q 021425 185 TFFCFVELLSG--FRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADS 262 (312)
Q Consensus 185 af~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~ 262 (312)
||-++..||.. ++..|.+ ++..++..+..+..+++.+.++||+|+++. .|.|.+|+.+||+|+|+-.||+.-+
T Consensus 686 afellk~LM~~r~~r~qy~p----dm~~lq~qmyqLsrl~hd~hrdlyn~le~~-ei~pslyAapw~lt~fasQf~lGfv 760 (948)
T KOG4436|consen 686 AFELLKFLMFDRGMRKQYRP----DMKKLQIQMYQLSRLLHDYHRDLYNHLEEN-EISPSLYAAPWFLTVFASQFPLGFV 760 (948)
T ss_pred HHHHHHHHHHHHhhHhhhch----HHHHHHHHHHHHHHHHHHHhHHHHHHHHhc-ccChHHhhhHHHHHHHHhhCcchHH
Confidence 99999999974 3545544 677788999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021425 263 LHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVI 308 (312)
Q Consensus 263 ~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~~~~ 308 (312)
.|++|.+|..|. +++|++ +++++-.+|..|++.|.=+-+
T Consensus 761 arvfd~~flq~t---evifK~----a~~llsv~k~~l~e~dn~e~i 799 (948)
T KOG4436|consen 761 ARVFDLIFLQGT---EVIFKV----ALSLLSVHKQLLLEKDNFEEI 799 (948)
T ss_pred HHHHHHHHhhcc---chhhhh----HHHHHHhhHHHHHhhhhHHHH
Confidence 999999999866 778888 999999999999887644433
No 15
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-24 Score=186.63 Aligned_cols=175 Identities=17% Similarity=0.262 Sum_probs=141.8
Q ss_pred HHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHHHH
Q 021425 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTF 186 (312)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~af 186 (312)
.+|+..|+.|++...+.-..... -...++.|..++......+|++.|.||.||||.+|++++. |.+|+
T Consensus 97 ~nQV~LDv~RSl~rfppg~p~~~-R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-----------E~~Al 164 (395)
T KOG2595|consen 97 YNQVILDVERSLGRFPPGIPKEL-RLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-----------ELEAL 164 (395)
T ss_pred cceEEEehhhhhccCCCCCCHHH-HHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-----------hHhhh
Confidence 66999999999855432111100 0156677777777778899999999999999999999999 99999
Q ss_pred HHHHHHHhh-hhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccC-ChhhHHH
Q 021425 187 FCFVELLSG-FRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEF-NFADSLH 264 (312)
Q Consensus 187 ~~f~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~-~~~~~~r 264 (312)
-+..++... +++.... ++++..+.+..+..+++..+|+||+.|++- .+.+ +|+..|++|+|+|.+ ++..++|
T Consensus 165 ~l~E~L~~~~lrdfM~~----Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~a-evgt-lFaLsWllTWFaH~L~~~~~vvR 238 (395)
T KOG2595|consen 165 SLMEELSTLHLRDFMLP----TLDFTVRQLRLISPIIKEVNPELYQFLQSA-EVGT-LFALSWLLTWFAHNLKDIRIVVR 238 (395)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcChHHHHHHHhh-cccc-eehhhHHHHHHhhcchhHHHHHH
Confidence 999988764 4544443 677788899999999999999999999985 8886 699999999999998 7899999
Q ss_pred HHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021425 265 IWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRN 306 (312)
Q Consensus 265 iWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~~ 306 (312)
++|+|++... -. ..|++.++++..+.+|++.+.+.
T Consensus 239 lfD~Flas~p---l~----piyv~A~vvL~r~~eIl~~~~dm 273 (395)
T KOG2595|consen 239 LFDFFLASHP---LL----PIYVYAAVVLYRRSEILKCDCDM 273 (395)
T ss_pred HHHHHHhcCc---ch----hHHHHHHHhhhhHHHHHHHHhhh
Confidence 9999999533 22 33559999999999999887653
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.92 E-value=2.5e-25 Score=203.95 Aligned_cols=176 Identities=29% Similarity=0.476 Sum_probs=157.8
Q ss_pred HHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHHHH
Q 021425 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTF 186 (312)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~af 186 (312)
.++| +|+.||+|.+..|..... .+++.+.+|+.+|+.++|++||||||..++++++.++. |++||
T Consensus 186 ~~~~-~d~~Rt~~~~~~f~~~~~---~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-----------ee~af 250 (397)
T KOG1102|consen 186 SEII-RDLSRTFPAHLLFRKRYG---VGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-----------EEEAF 250 (397)
T ss_pred hHHH-hhccCcCcchhhhhhhcC---cccccccccchhhcccCCCcccccchhhHhhhhhccCc-----------hhhhh
Confidence 3466 999999999999988544 78899999999999999999999999999999999998 99999
Q ss_pred HHHHHHHhhhh-hhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHH
Q 021425 187 FCFVELLSGFR-DNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHI 265 (312)
Q Consensus 187 ~~f~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~ri 265 (312)
|+++.+|.... +.+ ..+..++......+..+++...|.++.|+... ++...+|+.+|++|+|+..+|++.+.|+
T Consensus 251 ~~lv~l~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~-~~~~~~~~s~w~~t~f~~k~p~~~~~ri 325 (397)
T KOG1102|consen 251 PLLVKLMKNYGLDLL----SPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQ-GIELSMYASQWFLTLFAAKFPLELVLRI 325 (397)
T ss_pred hhhhhhhhccchhcc----cccCCchhhhHHHHHHHHHHhChhhhhhcccc-ccccceeccceeeEeeeccccHHHHHHH
Confidence 99999998653 333 23788899999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021425 266 WDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVII 309 (312)
Q Consensus 266 WD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~~~~~ 309 (312)
||+++.+|. .+++++ +++++....+.+.+.++++++.
T Consensus 326 ~d~~~~~g~---~i~~~~----~~~l~~~~~~~~~~~~~e~~~~ 362 (397)
T KOG1102|consen 326 WDALFVEGV---SILFRF----SLALLKHKADDLLDLDFESLLS 362 (397)
T ss_pred hHHHHHhch---HHHHHH----HHHHhhhhhHHHhhccHHHHHH
Confidence 999999863 556666 9999999999999999887764
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=6.4e-21 Score=154.48 Aligned_cols=129 Identities=26% Similarity=0.480 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhH
Q 021425 103 DSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAE 182 (312)
Q Consensus 103 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E 182 (312)
|....+.|.+|+.|-||.+.+|...-. .++..|.|+|.+|..++|+.||||+=.-|+++++..+. +
T Consensus 139 ~p~t~e~i~kdl~rqfp~hemf~s~~k---~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-----------~ 204 (267)
T KOG2221|consen 139 DPKTAEGIHKDLHRQFPFHEMFGSSGK---TGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-----------A 204 (267)
T ss_pred CCcchhhhccccccCCCcccccccccc---cchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-----------H
Confidence 345688999999999999999987644 77899999999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHH
Q 021425 183 ADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWI 249 (312)
Q Consensus 183 ~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~ 249 (312)
.+|||||+.+.+.+.+.|.. .+...++..-.++..|+++.+|..|.|+... .++|.+|...||
T Consensus 205 rdaf~~~vqicekylqgy~~---sgleaiq~dg~il~~Llkk~~~p~~rH~~~~-kvdp~lym~ewF 267 (267)
T KOG2221|consen 205 RDAFWCFVQICEKYLQGYYS---SGLEAIQNDGGILEGLLKKASPPPYRHLGGD-KVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHHHHHHHcccccc---cchhhhhcccHHHHHHHHhcCCCCCcccccC-CCCHHHhhhccC
Confidence 99999999999987665543 2677888888999999999999999999996 999999999996
No 18
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.65 E-value=1.2e-15 Score=144.11 Aligned_cols=182 Identities=18% Similarity=0.204 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhhhCCCCccccCCCCc----chhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccch
Q 021425 105 EIMEQIDRDVKRTHPDMHFFSGDSSF----ATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVS 180 (312)
Q Consensus 105 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~----~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~ 180 (312)
.+.-.|..|+.||+|.+.+|++..+. .--.++.|+++..+|....-++|||||-+.+++.++..+.
T Consensus 226 ~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~---------- 295 (948)
T KOG4436|consen 226 LHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP---------- 295 (948)
T ss_pred HHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc----------
Confidence 46779999999999999999987541 0115899999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhhh--hhhhccccccchhhHHHHHHHHHHHHHhhcH-HHHHHHHhhcCCChhHHhHHHHHHhhcccC
Q 021425 181 AEADTFFCFVELLSGF--RDNFCQQLDNSVVGIRSTITRLSQLLKEHDE-ELWRHLEVTTKVNPQFYAFRWITLLLTQEF 257 (312)
Q Consensus 181 ~E~~af~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p-~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~ 257 (312)
++.+|..++.+|... +..+.+ .+..+...+..++...+...| .++.|+.+. +.+...|+..||++.|...|
T Consensus 296 -~E~assv~~~lm~~~rl~~l~kp----e~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq-~~h~S~~~rs~flt~~ltt~ 369 (948)
T KOG4436|consen 296 -VEEASSVKVQLMILYRLRELSKP----EMEPLGLCMFQLECTNQDQSPMDLFSHFPEQ-HFHTSMYARSWFLTNFLTTF 369 (948)
T ss_pred -HHHHHHHHHHHHHhhcccccCCc----ccchhHHHHHhhcccccccchhHHhhccccc-CCCccHHHHHHHHHhhcccC
Confidence 899999999999854 444433 455566677888889999999 999999997 89999999999999999999
Q ss_pred ChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHhhhhc
Q 021425 258 NFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLIL-LILWKDAMFLELRNVII 309 (312)
Q Consensus 258 ~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l-~~~~~~ll~~~~~~~~~ 309 (312)
|+...-|+.|.+.++|- ...|++ .+|++ ....-.++.+|+++++.
T Consensus 370 Pi~~a~r~~~~f~~egl---lk~fr~----~ia~~~~~~d~~~~s~D~EG~~~ 415 (948)
T KOG4436|consen 370 PIFMAARISDTFSSEGL---LKRFRD----SIAYLHQLRDIELESLDMEGMLS 415 (948)
T ss_pred chhhccccccccccccH---HHHHhh----hHHHHHHHhhhhhhccCcccccc
Confidence 99999999999999644 445566 88999 55556778889888854
No 19
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.59 E-value=1.4e-14 Score=129.16 Aligned_cols=171 Identities=19% Similarity=0.401 Sum_probs=130.5
Q ss_pred HHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCC--CChHHHHHHHHHHHcCCCCccccchhHHH
Q 021425 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYV--QGMNEILAPLYYVFKSDPDEEFSVSAEAD 184 (312)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~--QGm~~i~~~ll~~~~~~~~~~~~~~~E~~ 184 (312)
..+|++|..|.......=.++ .-.....|..++..|++. .++.|. -|.-.++-|++..-.+ -++
T Consensus 67 Q~~lr~DC~~~~d~l~n~ee~---~v~vv~dlES~iTfYCK~-Rn~~Y~~d~gWi~lL~pl~~L~lp----------rsd 132 (669)
T KOG3636|consen 67 QCALRNDCRKLADGLKNKEED---KVPVVSDLESFITFYCKK-RNMDYIKDIGWITLLEPLLLLNLP----------RSD 132 (669)
T ss_pred hhHHHHHHHHHHhhcCCchhh---ccchhHhhhhHhhhhhhc-cCCcccccccHHHHHHHHHHhcCC----------cch
Confidence 447888887765433221111 014556789999999864 355565 4667788888877666 799
Q ss_pred HHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHH
Q 021425 185 TFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLH 264 (312)
Q Consensus 185 af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~r 264 (312)
.|-||.++++++.+.-+. +.| .-+..|+-+|+.+||+|..||..+ .+.|.+|+..||-+||+...+.+.+.-
T Consensus 133 ~fN~F~ai~~kYIPkdcr-----pkg--~~Fh~FRLLlqYHdPelc~~Ldtk-kitPd~Y~lnWf~sLFas~~Stev~~a 204 (669)
T KOG3636|consen 133 EFNVFFAITTKYIPKDCR-----PKG--QIFHLFRLLLQYHDPELCNHLDTK-KITPDMYTLNWFASLFASSMSTEVCHA 204 (669)
T ss_pred hhhhhHhhhhcccCCCCC-----CCC--ccchHHHHHHHhcCHHHhhhhhcc-ccCchHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999987665443 222 245678889999999999999998 999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021425 265 IWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELR 305 (312)
Q Consensus 265 iWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~ 305 (312)
+||.|+..+++ .+++++ ++.+|+.-|++|+++..+
T Consensus 205 ~WdlY~qqaDP--F~vffL----aliiLiNake~ILq~~sd 239 (669)
T KOG3636|consen 205 LWDLYIQQADP--FLVFFL----ALIILINAKEEILQVKSD 239 (669)
T ss_pred HHHHHHhcCCc--eehHHH----HHHHhcccHHHHhhhccc
Confidence 99999998774 333444 788899999999987544
No 20
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=8.8e-06 Score=69.97 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHHHHHHHHHHHhh--hhhhhccccccchhh
Q 021425 133 SNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSG--FRDNFCQQLDNSVVG 210 (312)
Q Consensus 133 ~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~--~~~~~~~~~~~~~~~ 210 (312)
.+....+.||.+.+...|++++|..+..+++.++....+ |+++|--.+.++.- -..... +.+.-.
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavvalllhysid----------eaecfekacrilacndpgrrli---dqsfla 175 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSID----------EAECFEKACRILACNDPGRRLI---DQSFLA 175 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhccc----------HHHHHHHhheeeeecCcchhhh---hhHHHH
Confidence 456678999999999999999999999999998888776 99998877777642 111111 113344
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHH
Q 021425 211 IRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCL 290 (312)
Q Consensus 211 ~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a 290 (312)
....+..|..++.++.-..++.+... .-+.......|-.-+| .++|+.-..|++|.|+.+|. +.+.++ ++|
T Consensus 176 fesscmtfgdlvnkycqaahklmvav-sedvlqvyadwqrwlf-gelplcyfarvfdvflvegy---kvlyrv----ala 246 (559)
T KOG2801|consen 176 FESSCMTFGDLVNKYCQAAHKLMVAV-SEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGY---KVLYRV----ALA 246 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecch---HHHHHH----HHH
Confidence 55667889999999988888777654 3333334557888777 48999999999999999876 777777 999
Q ss_pred HHHHHHHH
Q 021425 291 ILLILWKD 298 (312)
Q Consensus 291 ~l~~~~~~ 298 (312)
++....+.
T Consensus 247 ilkffhkv 254 (559)
T KOG2801|consen 247 ILKFFHKV 254 (559)
T ss_pred HHHHHHHh
Confidence 99877654
No 21
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=98.06 E-value=3.1e-08 Score=90.06 Aligned_cols=139 Identities=29% Similarity=0.569 Sum_probs=101.8
Q ss_pred HHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHHHH
Q 021425 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTF 186 (312)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~af 186 (312)
...|.+|+.|...+.-+|.+. ...+. +++..+|...+-+-||+|||.++.+|++..+.+ |+.+-
T Consensus 607 ~~~~~kd~e~~~~~~~~fs~~-----~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed----------~~~~~ 670 (813)
T KOG1648|consen 607 LHRIDKDVERCDRNLMFFSNK-----DNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFED----------EALTL 670 (813)
T ss_pred eeeecchhhhCcchheeecCC-----cchhh-heeeeeeeccccccccccchhhccCCcCCChhh----------ccccc
Confidence 457899999999999999887 55555 788889999999999999999999999988876 66666
Q ss_pred HHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHH
Q 021425 187 FCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIW 266 (312)
Q Consensus 187 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riW 266 (312)
-||.-+|-.-+..|.. .+|+.+.+-.+. +++-.+|-. .-+. .-+-..++|+..-|.++++.+.....|
T Consensus 671 e~~s~~~~~q~~~~~q-----~~~~~~~l~~~r-~~~v~~~l~-s~id-----~~qa~~f~~~~~~~~~~~s~~~~~~~~ 738 (813)
T KOG1648|consen 671 ECFSLLMLRQRGKFPQ-----RPGMSKCLLNLR-LIQVVDPLI-SDID-----YAQALSFRWFLLDFKRELSYECTYKVW 738 (813)
T ss_pred CCCcHHHHHhcccCCC-----CCCccccccccc-chhhhcchh-cchh-----hhhhcceeeeccCcccccCCCCcceee
Confidence 6777777655555543 233333332222 555556621 1111 112356899999999999999999999
Q ss_pred HHhhcCC
Q 021425 267 DTLLSDP 273 (312)
Q Consensus 267 D~~l~~~ 273 (312)
..+.+..
T Consensus 739 ~~~~~~~ 745 (813)
T KOG1648|consen 739 EVIWAAQ 745 (813)
T ss_pred Eeecccc
Confidence 9998853
No 22
>PF14961 BROMI: Broad-minded protein
Probab=96.55 E-value=0.056 Score=55.51 Aligned_cols=148 Identities=13% Similarity=0.169 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHHHHHHHHHHHhhhhhh--------hcccccc--c
Q 021425 138 LKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDN--------FCQQLDN--S 207 (312)
Q Consensus 138 L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~~~~~--------~~~~~~~--~ 207 (312)
-.+|++.|....+.-+| .|..-.++.+++++..| -+.+...+.++-..+... ....+.. .
T Consensus 1086 ~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd---------~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~ 1155 (1296)
T PF14961_consen 1086 SLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGD---------KERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTA 1155 (1296)
T ss_pred hhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCC---------hhHhHHHHHHHHHHHHHhHhccccccccccCCchhh
Confidence 34455555555555445 58888888877777543 344444443333222111 1111100 1
Q ss_pred hhhH----HHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHH
Q 021425 208 VVGI----RSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFF 283 (312)
Q Consensus 208 ~~~~----~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~i 283 (312)
..|+ ...+..++.+|+...|.++.-|.. .|..|...|.+|+.-+|=.-++...++.--=..+..|. ++-+|+
T Consensus 1156 ~s~i~p~~~~~~~~vE~ll~~E~P~V~saf~~-sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~---dyqvY~ 1231 (1296)
T PF14961_consen 1156 ESGIHPVYFCSCHYVEMLLKAELPLVFSAFRM-SGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGP---DYQVYI 1231 (1296)
T ss_pred hcCCCchhhhHHHHHHHHHHhhccHHHHHHHH-cCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCc---cceeeh
Confidence 1222 224678999999999999999987 49999999999999999999999998877777777665 555666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021425 284 LFIFSCLILLILWKDAMFLE 303 (312)
Q Consensus 284 l~~~~~a~l~~~~~~ll~~~ 303 (312)
|+|++...+.+|++..
T Consensus 1232 ----~VailkHlq~~ilq~~ 1247 (1296)
T PF14961_consen 1232 ----CVAILKHLQPEILQHT 1247 (1296)
T ss_pred ----hHHHHHHhhHHHHHhh
Confidence 9999999999999753
No 23
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=86.41 E-value=0.26 Score=45.20 Aligned_cols=76 Identities=26% Similarity=0.450 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHC----CCCCCCCChHHHHHHHHHHHcCCCCcccc
Q 021425 103 DSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLN----PGIRYVQGMNEILAPLYYVFKSDPDEEFS 178 (312)
Q Consensus 103 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~----p~~gY~QGm~~i~~~ll~~~~~~~~~~~~ 178 (312)
+.+.++.|-....---|...+-+ ...+.|.-||.-..... --+|..|||++++||++.-..+
T Consensus 520 n~e~mk~illn~avyn~~m~ysq-------gmsdllapvlcevqnesetfwcfvglmqgmsdlvapilaevld------- 585 (781)
T KOG2224|consen 520 NTESMKNILLNFAVYNPAMGYSQ-------GMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLD------- 585 (781)
T ss_pred cHHHHHHHHHhheeecccccccc-------cchhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhc-------
Confidence 67788888765443333333222 23334444543322111 1258889999999999987766
Q ss_pred chhHHHHHHHHHHHHhh
Q 021425 179 VSAEADTFFCFVELLSG 195 (312)
Q Consensus 179 ~~~E~~af~~f~~l~~~ 195 (312)
|.++||||+.+|.+
T Consensus 586 ---esdtfwcfvglmqn 599 (781)
T KOG2224|consen 586 ---ESDTFWCFVGLMQN 599 (781)
T ss_pred ---cccchhhhhhhhcc
Confidence 99999999999985
No 24
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=78.48 E-value=1.5 Score=41.95 Aligned_cols=45 Identities=27% Similarity=0.328 Sum_probs=34.4
Q ss_pred CCCCCCCCChhHHHHHhhCcCCCCCCCc--hHHHHHHHHHHHHHHHHhc
Q 021425 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLW--PSELAKKRSQYKHFKDDLL 48 (312)
Q Consensus 2 ~GiP~~~~~R~~vW~~LLg~~~~~~~~~--~~~~~~~~~~Y~~l~~~~~ 48 (312)
.||++- +|+.+|.+|+|+++.+.+.. .+....++.+|..+.....
T Consensus 76 ~gi~ps--ir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c~ 122 (488)
T KOG2197|consen 76 GGIDPS--IRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVCQ 122 (488)
T ss_pred CCCCCc--ccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHcc
Confidence 588885 99999999999999877543 3345566688888876654
No 25
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=44.30 E-value=17 Score=19.42 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=11.3
Q ss_pred CCCCCChHHHHHHHHH
Q 021425 152 IRYVQGMNEILAPLYY 167 (312)
Q Consensus 152 ~gY~QGm~~i~~~ll~ 167 (312)
-||.||..+.+--.+.
T Consensus 3 sgyiqgipdflkgylh 18 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYLH 18 (31)
T ss_pred cccccccHHHHHHHHh
Confidence 3899999887655443
No 26
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=38.03 E-value=34 Score=23.58 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCCChHHHHHHHHHHHcC
Q 021425 154 YVQGMNEILAPLYYVFKS 171 (312)
Q Consensus 154 Y~QGm~~i~~~ll~~~~~ 171 (312)
|.||+++-.+.+..-+.+
T Consensus 51 YNQGi~da~a~i~ekl~d 68 (82)
T COG5460 51 YNQGIKDARAVIEEKLAD 68 (82)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 789999999988877765
No 27
>PF12854 PPR_1: PPR repeat
Probab=24.00 E-value=1.3e+02 Score=16.76 Aligned_cols=31 Identities=6% Similarity=0.182 Sum_probs=26.8
Q ss_pred CCChhHHhHHHHHHhhcccCChhhHHHHHHH
Q 021425 238 KVNPQFYAFRWITLLLTQEFNFADSLHIWDT 268 (312)
Q Consensus 238 ~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~ 268 (312)
|+.|..+++.-++..|++.=.++...+++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 6778888889999999999899999988875
No 28
>PRK10878 hypothetical protein; Provisional
Probab=23.99 E-value=1e+02 Score=21.17 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhh
Q 021425 213 STITRLSQLLKEHDEELWRHLEVT 236 (312)
Q Consensus 213 ~~~~~~~~ll~~~~p~L~~hl~~~ 236 (312)
.....|+.+|...||+|+.++...
T Consensus 22 ~e~~~Fe~LL~~~D~dL~~W~~g~ 45 (72)
T PRK10878 22 DEKRIFIRLLECDDPDLFNWLMNH 45 (72)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCC
Confidence 356789999999999999999875
No 29
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=23.24 E-value=1.8e+02 Score=18.59 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=30.8
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccC
Q 021425 218 LSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEF 257 (312)
Q Consensus 218 ~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~ 257 (312)
|-++-.++.|+--+.|++. ||+.+.-.+.-+++||....
T Consensus 6 FmqIaMK~lPEak~~L~k~-GIeLsme~~qP~m~L~~~VM 44 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKK-GIELSMEMLQPLMQLLTKVM 44 (56)
T ss_pred HHHHHHHHhHHHHHHHHHc-CccCCHHHHHHHHHHHHHHH
Confidence 4456667889988888886 99988888888999887654
No 30
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=21.58 E-value=1.8e+02 Score=16.94 Aligned_cols=8 Identities=25% Similarity=0.530 Sum_probs=4.7
Q ss_pred HHHHHhhc
Q 021425 264 HIWDTLLS 271 (312)
Q Consensus 264 riWD~~l~ 271 (312)
.+.|.+++
T Consensus 5 tl~dfylc 12 (43)
T PF11395_consen 5 TLFDFYLC 12 (43)
T ss_pred ehhHHHHH
Confidence 35666665
No 31
>PF13041 PPR_2: PPR repeat family
Probab=21.42 E-value=1.4e+02 Score=18.02 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCCChhHHhHHHHHHhhc
Q 021425 227 EELWRHLEVTTKVNPQFYAFRWITLLLT 254 (312)
Q Consensus 227 p~L~~hl~~~~~i~~~~~~~~W~~~lF~ 254 (312)
-++++.+.+. |+.|..+++.-++..|+
T Consensus 23 ~~l~~~M~~~-g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 23 LKLFKEMKKR-GIKPDSYTYNILINGLC 49 (50)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHc
Confidence 3566777876 89999888877776654
No 32
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=20.39 E-value=1.7e+02 Score=22.07 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=22.7
Q ss_pred HhHHHHHHhhcccCChhhHHHHHHHhhcCC
Q 021425 244 YAFRWITLLLTQEFNFADSLHIWDTLLSDP 273 (312)
Q Consensus 244 ~~~~W~~~lF~~~~~~~~~~riWD~~l~~~ 273 (312)
|++.+.+.==.+.++++.++..|+.+|...
T Consensus 28 f~F~~~~~~~qr~l~~e~Ai~~W~llf~~~ 57 (117)
T PF03556_consen 28 FTFDFAREEGQRSLPLETAIAYWRLLFSGR 57 (117)
T ss_dssp HHHHHHS-TT-SSEEHHHHHHHHHHHTTTT
T ss_pred HHHHHhCCcccCCCCHHHHHHHHHHHcCCC
Confidence 566666655578899999999999999754
Done!