Query 021425
Match_columns 312
No_of_seqs 230 out of 1626
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 03:57:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 1.1E-51 3.7E-56 380.1 20.7 249 1-309 31-353 (396)
2 2qfz_A TBC1 domain family memb 100.0 6.9E-51 2.4E-55 369.6 22.8 244 1-308 48-306 (345)
3 2qq8_A TBC1 domain family memb 100.0 8.3E-49 2.8E-53 353.9 16.3 238 2-309 47-287 (334)
4 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 3.3E-47 1.1E-51 340.6 20.4 215 2-309 32-248 (310)
5 3qye_A TBC1 domain family memb 100.0 3.9E-47 1.3E-51 343.2 11.3 176 107-308 104-282 (331)
6 4hl4_A TBC1 domain family memb 100.0 9.8E-44 3.4E-48 315.2 12.5 177 106-306 82-261 (292)
7 3qwl_A TBC1 domain family memb 100.0 6.8E-38 2.3E-42 275.6 6.2 201 2-308 49-261 (294)
8 4gba_A DCN1-like protein 3; E3 30.7 1.2E+02 0.0041 24.7 6.3 56 207-272 75-132 (221)
9 3kev_A Galieria sulfuraria DCU 30.1 1.5E+02 0.0053 23.5 6.8 56 207-272 76-131 (199)
10 3tdu_A DCN1-like protein 1; E2 29.1 98 0.0034 24.7 5.5 56 207-272 74-129 (200)
11 2js3_A Uncharacterized protein 28.3 17 0.00058 24.2 0.7 10 154-163 18-27 (96)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1.1e-51 Score=380.08 Aligned_cols=249 Identities=31% Similarity=0.544 Sum_probs=214.0
Q ss_pred CCCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccC
Q 021425 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (312)
Q Consensus 1 ~~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
.+|||+. +|+.||++|||++|.+.+.|...++++++.|.++++++....
T Consensus 31 ~~GIP~~--lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~----------------------------- 79 (396)
T 1fkm_A 31 WNGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQ----------------------------- 79 (396)
T ss_dssp TTCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSS-----------------------------
T ss_pred HcCCCHH--HHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcc-----------------------------
Confidence 3799997 999999999999999999999999999999999999875310
Q ss_pred ccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHH
Q 021425 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (312)
Q Consensus 81 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~ 160 (312)
...+.+..+||++||.||+|++++|+.+ .+++.|.|||.+|+.+||++|||||||+
T Consensus 80 -------------------~~~~~~~~~qI~~Dv~RT~p~~~~F~~~-----~~~~~L~rIL~aya~~np~iGY~QGmn~ 135 (396)
T 1fkm_A 80 -------------------HSRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQRILYLWAIRHPASGYVQGIND 135 (396)
T ss_dssp -------------------CSTHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHHHHHHHHHHCTTTCSCTTHHH
T ss_pred -------------------CcccHHHHHHHHHHhhhhCCCcccccCc-----hHHHHHHHHHHHHHHHCCCCCcccCcHH
Confidence 0134568899999999999999999986 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCC------------------ccccchhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHH
Q 021425 161 ILAPLYYVFKSDPD------------------EEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLL 222 (312)
Q Consensus 161 i~~~ll~~~~~~~~------------------~~~~~~~E~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 222 (312)
||++|++++..+.. .+...++|++|||||+++|++++++|.. +.+|+...+..++.+|
T Consensus 136 i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~----~~~~i~~~~~~l~~LL 211 (396)
T 1fkm_A 136 LVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH----GQPGILRQVKNLSQLV 211 (396)
T ss_dssp HHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHHHHHHH
Confidence 99999999854321 0112345999999999999998888865 6789999999999999
Q ss_pred HhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCC-----------------------------
Q 021425 223 KEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDP----------------------------- 273 (312)
Q Consensus 223 ~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~----------------------------- 273 (312)
+..+|+|++||++. ++.+.+|+++||+|+|+++||++.++||||.+|++|
T Consensus 212 ~~~dP~L~~hL~~~-~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 290 (396)
T 1fkm_A 212 KRIDADLYNHFQNE-HVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASF 290 (396)
T ss_dssp HHHCHHHHHHHHHT-TCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccc
Confidence 99999999999997 999999999999999999999999999999999987
Q ss_pred ----------------------CCC-----CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021425 274 ----------------------DGP-----QVGLMFFLFIFSCLILLILWKDAMFLELRNVII 309 (312)
Q Consensus 274 ----------------------~~~-----~~~~~~il~~~~~a~l~~~~~~ll~~~~~~~~~ 309 (312)
++. ...+..+++++|+|+|...|++|+++|+++++.
T Consensus 291 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~ 353 (396)
T 1fkm_A 291 VTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETIT 353 (396)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHH
T ss_pred cccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 100 001234566669999999999999999998763
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=6.9e-51 Score=369.65 Aligned_cols=244 Identities=30% Similarity=0.562 Sum_probs=209.7
Q ss_pred CCCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccC
Q 021425 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (312)
Q Consensus 1 ~~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
.+|||+. +|+.||++|||++|.+.+.|...++++++.|.++++++...+..
T Consensus 48 ~~GiP~~--~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~--------------------------- 98 (345)
T 2qfz_A 48 WSGIPKP--VRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRND--------------------------- 98 (345)
T ss_dssp TTCCCGG--GHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC---------------------------------
T ss_pred HCCCCHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCc---------------------------
Confidence 4799997 99999999999999999999999999999999999987532110
Q ss_pred ccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHH
Q 021425 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (312)
Q Consensus 81 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~ 160 (312)
-.+.+..++|++||.||+|+ ++|+.+ .+++.|.|||.+|+.+||++|||||||+
T Consensus 99 --------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~-----~~~~~L~rIL~~ya~~~p~vgY~QGm~~ 152 (345)
T 2qfz_A 99 --------------------EVHQDTYRQIHIDIPRMSPE-ALILQP-----KVTEIFERILFIWAIRHPASGYVQGIND 152 (345)
T ss_dssp ----------------------CHHHHHHHHHHGGGCSCH-HHHTSH-----HHHHHHHHHHHHHHHHCTTTCCCTTHHH
T ss_pred --------------------cchHHHHHHHHHhCcccCCc-cccCCc-----hHHHHHHHHHHHHHHHCCCCCcccChHH
Confidence 01346789999999999999 999987 7899999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCc--------------cccchhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhc
Q 021425 161 ILAPLYYVFKSDPDE--------------EFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHD 226 (312)
Q Consensus 161 i~~~ll~~~~~~~~~--------------~~~~~~E~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 226 (312)
||++|+.++..+... +....+|++|||||+++|++++++|.. +.+|+...+..++.+|+..+
T Consensus 153 i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~----~~~~i~~~~~~l~~ll~~~d 228 (345)
T 2qfz_A 153 LVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTF----AQPGIQMKVKMLEELVSRID 228 (345)
T ss_dssp HHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSST----TCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHcccccccc----CcHHHHHHHHHHHHHHHHHH
Confidence 999999988642110 012346999999999999998887765 67899999999999999999
Q ss_pred HHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHh
Q 021425 227 EELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMF-LELR 305 (312)
Q Consensus 227 p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~-~~~~ 305 (312)
|+|++||.+. ++.+.+|+++||+|+|+++||++.++||||.++++|.+...+++++ |+|++...+++|+. .|++
T Consensus 229 P~L~~hL~~~-~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v----~~AiL~~~~~~ll~~~d~~ 303 (345)
T 2qfz_A 229 EQVHRHLDQH-EVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYV----CAAFLVRWRKEILEEKDFQ 303 (345)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHH----HHHHHHHTHHHHHHCCCHH
T ss_pred HHHHHHHHHc-CCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHH----HHHHHHHHHHHHHhhCCHH
Confidence 9999999997 9999999999999999999999999999999999887543355566 99999999999995 7777
Q ss_pred hhh
Q 021425 306 NVI 308 (312)
Q Consensus 306 ~~~ 308 (312)
+++
T Consensus 304 ~il 306 (345)
T 2qfz_A 304 ELL 306 (345)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.3e-49 Score=353.90 Aligned_cols=238 Identities=22% Similarity=0.367 Sum_probs=187.3
Q ss_pred CCCCCCCCChhHHHHHhhCcC-CCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccC
Q 021425 2 QGIPDGAGIRSTVWKLLLVYL-PPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (312)
Q Consensus 2 ~GiP~~~~~R~~vW~~LLg~~-~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+|||+. +|+.||++|+|+. +.+.+.+...+++.++.|.++......
T Consensus 47 ~GIP~~--lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~------------------------------- 93 (334)
T 2qq8_A 47 QGIPPS--VRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSE------------------------------- 93 (334)
T ss_dssp TCCCHH--HHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC----------------------------------------
T ss_pred CCCCHH--HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhcccccc-------------------------------
Confidence 799997 9999999999984 322233444455555555554322110
Q ss_pred ccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHH
Q 021425 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (312)
Q Consensus 81 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~ 160 (312)
.+..+.|++.. .+.+..++|++||.||+|++++|+... .+++.|.|||.+|+.+||++|||||||+
T Consensus 94 -~~~~d~~~~~~---------~~~~~~~~I~~Dv~RT~p~~~~F~~~~----~~~~~L~rIL~aya~~~p~vgY~QGm~~ 159 (334)
T 2qq8_A 94 -VENEDAGFSAA---------DREASLELIKLDISRTFPNLCIFQQGG----PYHDMLHSILGAYTCYRPDVGYVQGMSF 159 (334)
T ss_dssp -----------------------CCHHHHHHHHHHTSSGGGCSSSTTS----TTHHHHHHHHHHHHHHCTTTCCCTTHHH
T ss_pred -Ccccccccccc---------cchhHHHHHHHHHhhcCCCchhhcCCC----chHHHHHHHHHHHHHhCCCCCcchhHHH
Confidence 01112222211 123468999999999999999998742 6789999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCccccchhHHHHHHHHHHHHhhh--hhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcC
Q 021425 161 ILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGF--RDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTK 238 (312)
Q Consensus 161 i~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~ 238 (312)
|||+|++++. |++|||||+++|++. ...|.. +.+++...+..++.+++..+|+|++||.+. +
T Consensus 160 iaa~lLl~~~-----------E~~aF~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~-~ 223 (334)
T 2qq8_A 160 IAAVLILNLD-----------TADAFIAFSNLLNKPCQMAFFRV----DHGLMLTYFAAFEVFFEENLPKLFAHFKKN-N 223 (334)
T ss_dssp HHHHHHHHSC-----------HHHHHHHHHHHHTSHHHHHHHSS----CCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-T
T ss_pred HHHHHHhcCC-----------HHHHHHHHHHHHHhhhHHhccCC----ChHHHHHHHHHHHHHHHHHCHHHHHHHHHc-C
Confidence 9999999886 999999999999975 334533 678888999999999999999999999997 9
Q ss_pred CChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021425 239 VNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVII 309 (312)
Q Consensus 239 i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~~~~~ 309 (312)
+.+.+|+++||+|+|++++|++.++||||.++++|. .+++++ |+|++...+++|+++++++++.
T Consensus 224 i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~---~~l~~v----alaiL~~~~~~Ll~~d~~~il~ 287 (334)
T 2qq8_A 224 LTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE---EFLFRT----ALGILKLFEDILTKMDFIHMAQ 287 (334)
T ss_dssp CCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH---HHHHHH----HHHHHHHTHHHHHTCCHHHHHH
T ss_pred CCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC---HHHHHH----HHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999865 555555 9999999999999999988763
No 4
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.3e-47 Score=340.56 Aligned_cols=215 Identities=23% Similarity=0.399 Sum_probs=188.7
Q ss_pred CCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccCc
Q 021425 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (312)
Q Consensus 2 ~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+|||+. +|+.||+.|+|+.+. ...++.|..+.++.
T Consensus 32 ~GIP~~--lR~~vW~~llg~~~~---------~~~~~~Y~~l~~~~---------------------------------- 66 (310)
T 3hzj_A 32 SGVPEA--LRAEVWQLLAGCHDN---------QAMLDRYRILITKD---------------------------------- 66 (310)
T ss_dssp HCCCGG--GHHHHHHHHTTCCCC---------HHHHHHHHHHTTSC----------------------------------
T ss_pred CCCCHH--HHHHHHHHHHCCCcc---------hhHHHHHHHHHhcc----------------------------------
Confidence 699997 999999999998662 23446676653211
Q ss_pred cCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHH
Q 021425 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (312)
Q Consensus 82 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i 161 (312)
.+..++|++||.||+|++++|+...+ .+++.|.|||.+|+.+||++|||||||+|
T Consensus 67 ----------------------~~~~~~I~~Dv~Rt~p~~~~f~~~~~---~~~~~L~~IL~ay~~~~p~igY~QGm~~i 121 (310)
T 3hzj_A 67 ----------------------SAQESVITRDIHRTFPAHDYFKDTGG---DGQESLYKICKAYSVYDEDIGYCQGQSFL 121 (310)
T ss_dssp ----------------------CTTHHHHHHHHTTSSTTSTTTSSTTS---HHHHHHHHHHHHHHHHCTTTCSCTTHHHH
T ss_pred ----------------------CCcHHHHHHHHHhhCCCchhhcCCCc---hhHHHHHHHHHHHHHHCCCCCccCCHHHH
Confidence 01257999999999999999998754 78999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCccccchhHHHHHHHHHHHHhh--hhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCC
Q 021425 162 LAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSG--FRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKV 239 (312)
Q Consensus 162 ~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i 239 (312)
||+|+.+++ |++|||||+++|.+ +++.|.. +.+++...+..++.+++.++|+||+||.+. ++
T Consensus 122 aa~lL~~~~-----------e~~aF~~l~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~-~i 185 (310)
T 3hzj_A 122 AAVLLLHMP-----------EEQAFCVLVKIMYDYGLRDLYRN----NFEDLHCKFYQLERLMQEQLPDLHSHFSDL-NL 185 (310)
T ss_dssp HHHHHHHSC-----------HHHHHHHHHHHHHTSCGGGGTHH----HHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-TC
T ss_pred HHHHHHhCC-----------HHHHHHHHHHHHhcccccccccc----cHHHHHHHHHHHHHHHHHhChHHHHHHHHc-CC
Confidence 999999996 99999999999986 5666654 678899999999999999999999999997 99
Q ss_pred ChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021425 240 NPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVII 309 (312)
Q Consensus 240 ~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~~~~~~ 309 (312)
++.+|+++||+|+|++++|++.++||||.++++|. .+++++ |+|++...+++|+++++++++.
T Consensus 186 ~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~---~~l~~v----~lail~~~~~~Ll~~d~~~~l~ 248 (310)
T 3hzj_A 186 EAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL---NIIFHV----ALALLKTSKEDLLQADFEGALK 248 (310)
T ss_dssp CGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT---THHHHH----HHHHHHHTHHHHHTCCHHHHHH
T ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc---HHHHHH----HHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999866 556666 9999999999999999988763
No 5
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=3.9e-47 Score=343.18 Aligned_cols=176 Identities=21% Similarity=0.363 Sum_probs=161.2
Q ss_pred HHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHHHH
Q 021425 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTF 186 (312)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~af 186 (312)
.++|++||+||+|++++|+.+.+ .+++.|.|||.+|+.+||++|||||||+||++|++++. |++||
T Consensus 104 ~~~I~~Dv~Rt~~~~~~f~~~~~---~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~-----------E~~aF 169 (331)
T 3qye_A 104 QHAILIDLGRTFPTHPYFSAQLG---AGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS-----------EEEAF 169 (331)
T ss_dssp HHHHHHHHTTSSTTSTTTCSTTC---HHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSC-----------HHHHH
T ss_pred hhHHHHhhcccCCCchhhcCCCc---ccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhh-----------HHHHH
Confidence 47999999999999999998755 78999999999999999999999999999999999886 99999
Q ss_pred HHHHHHHhh--hhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHH
Q 021425 187 FCFVELLSG--FRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLH 264 (312)
Q Consensus 187 ~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~r 264 (312)
|||+++|+. +++.|.. +.+++...+..++.+++.++|+||+||.+. ++.+.+|+++||+|+|++++|++.++|
T Consensus 170 ~~l~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~-~i~~~~~~~~W~l~lF~~~lp~~~~lr 244 (331)
T 3qye_A 170 KMLKFLMFDMGLRKQYRP----DMIILQIQMYQLSRLLHDYHRDLYNHLEEH-EIGPSLYAAPWFLTMFASQFPLGFVAR 244 (331)
T ss_dssp HHHHHHHTTTCGGGGGST----TCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-TCCGGGTSHHHHHSTTTTTSCHHHHHH
T ss_pred HHHHHHHHhcCchhcCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHhhhhCCHHHHHH
Confidence 999999986 4666655 778999999999999999999999999997 999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 021425 265 IWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFL-ELRNVI 308 (312)
Q Consensus 265 iWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~-~~~~~~ 308 (312)
|||.++++|. .+++++ |+|++..++++|+++ ++++++
T Consensus 245 lwD~~l~~g~---~~l~~v----alaiL~~~~~~ll~~~~~~~il 282 (331)
T 3qye_A 245 VFDMIFLQGT---EVIFKV----ALSLLGSHKPLILQHENLETIV 282 (331)
T ss_dssp HHHHHHHHCT---THHHHH----HHHHHHHTHHHHHTCCSHHHHH
T ss_pred HHHHHHHCCc---HHHHHH----HHHHHHHHHHHHhcCCCHHHHH
Confidence 9999999866 556666 999999999999987 677765
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=9.8e-44 Score=315.25 Aligned_cols=177 Identities=17% Similarity=0.310 Sum_probs=151.1
Q ss_pred HHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHHH
Q 021425 106 IMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADT 185 (312)
Q Consensus 106 ~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~a 185 (312)
..+||++||.||+|.++.|..... .+..++.|.|||.+|+.+||++|||||||+||++|++++. |++|
T Consensus 82 ~~~qI~~Dv~RT~~~~~~~~~~~~-~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~-----------e~~a 149 (292)
T 4hl4_A 82 DYQQVLLDVRRSLRRFPPGMPEEQ-REGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVG-----------ERLA 149 (292)
T ss_dssp THHHHHHHHHTTGGGSCTTSCHHH-HHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHC-----------HHHH
T ss_pred hHHHHHHhhhhhhhhccCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcC-----------HHHH
Confidence 478999999999999988754211 0167889999999999999999999999999999999887 9999
Q ss_pred HHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCC-hhhHHH
Q 021425 186 FFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFN-FADSLH 264 (312)
Q Consensus 186 f~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~-~~~~~r 264 (312)
||||+++|+...+.|.. .+..++...+..++.+|+..+|+|++||.+. ++. .+|+++||+|+|++++| ++.++|
T Consensus 150 F~~l~~l~~~~l~~~~~---~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~-~i~-~~~~~~W~ltlF~~~l~~~~~~~r 224 (292)
T 4hl4_A 150 TSLVEKLSTHHLRDFMD---PTMDNTKHILNYLMPIIDQVNPELHDFMQSA-EVG-TIFALSWLITWFGHVLSDFRHVVR 224 (292)
T ss_dssp HHHHHHHHHTTTTGGGC---SSSCTTTGGGGGHHHHHHHHCHHHHHHHC-C-CCC-SGGGHHHHHTTTTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHHHCHHHHHHHHHc-CCC-cchHHHHHHHHHhhhcCcHHHHHH
Confidence 99999999864433332 3677888889999999999999999999997 885 58999999999999996 999999
Q ss_pred HHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH--HHhh
Q 021425 265 IWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFL--ELRN 306 (312)
Q Consensus 265 iWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~--~~~~ 306 (312)
|||.++++|. .+++++ |+|++..+|++|+++ +++.
T Consensus 225 lWD~~l~~g~---~~~~~v----~~ail~~~~~~Ll~~~~d~~~ 261 (292)
T 4hl4_A 225 LYDFFLACHP---LMPIYF----AAVIVLYREQEVLDCDCDMAS 261 (292)
T ss_dssp HHHHHHHSCT---THHHHH----HHHHHHHTHHHHHTSCCSTTH
T ss_pred HHHHHHHcCC---cHHHHH----HHHHHHHHHHHHHcCCCCHHH
Confidence 9999999865 555555 999999999999986 4443
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=6.8e-38 Score=275.56 Aligned_cols=201 Identities=17% Similarity=0.265 Sum_probs=160.7
Q ss_pred CC-CCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccC
Q 021425 2 QG-IPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (312)
Q Consensus 2 ~G-iP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+| ||+. +|+.||++|+|++|.+++.|..++++++++|.++++..-
T Consensus 49 ~g~IP~~--~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~~-------------------------------- 94 (294)
T 3qwl_A 49 RFPLPSM--YRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHALK-------------------------------- 94 (294)
T ss_dssp HSCCCHH--HHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred CCCCCHH--HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhhh--------------------------------
Confidence 46 9997 999999999999999999999999999999999988521
Q ss_pred ccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHH----------CC
Q 021425 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKL----------NP 150 (312)
Q Consensus 81 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~----------~p 150 (312)
+.++|+.+.++ ....+..|... ++
T Consensus 95 -------------------------~~r~I~~~tP~---------------------~~vfl~~~~~~~~~l~~~~~~~~ 128 (294)
T 3qwl_A 95 -------------------------VVRFVSDATPQ---------------------AEVYLRMYQLESGKLPRSPSFPL 128 (294)
T ss_dssp -------------------------HTTSCCTTSCH---------------------HHHHHHHHHHHHTCCCSSTTSCC
T ss_pred -------------------------hhhhhhccCch---------------------HHHHHHHHHcccccccccccCCc
Confidence 12222221111 01111122211 22
Q ss_pred CCCCCCChHHHHHHHHHHHcCCCCccccchhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHHHhhcHHHH
Q 021425 151 GIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELW 230 (312)
Q Consensus 151 ~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~L~ 230 (312)
+. ++|||..||++++.++.+ |+||||||+++|++++++|.. +.+|++.. ++.+++..+|+|+
T Consensus 129 ~~-~~~~~~~Iaa~ll~l~~~----------E~dAFW~f~~Lm~~l~~~f~~----~~~gl~~~---l~~LL~~~dP~L~ 190 (294)
T 3qwl_A 129 EP-DDEVFLAIAKAMEEMVED----------SVDCYWITRRFVNQLNTKYRD----SLPQLPKA---FEQYLNLEDGRLL 190 (294)
T ss_dssp CH-HHHHHHHHHHHHHHHCCS----------HHHHHHHHHHHHHHHHTTTTT----TGGGHHHH---HHHHHHHHCHHHH
T ss_pred cc-chhhHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHhhCC----ChhHHHHH---HHHHHHHHHHHHH
Confidence 22 459999999999998877 999999999999998888876 67888765 4889999999999
Q ss_pred HHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-hhhh
Q 021425 231 RHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLEL-RNVI 308 (312)
Q Consensus 231 ~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~ll~~~~-~~~~ 308 (312)
+||++. ++.+.+++.+||+|+|++++|++.++||||.++++|. .+++++ |+|+|..+|++|+++++ ++++
T Consensus 191 ~HL~~~-~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~---~~l~~v----alAiL~~~r~~Ll~~~~~~~il 261 (294)
T 3qwl_A 191 THLRMC-SAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSC---KILVFV----AVEILLTFKIKVMALNSAEKIT 261 (294)
T ss_dssp HHHHHT-TCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCS---THHHHH----HHHHHHHTHHHHHHCCSHHHHH
T ss_pred HHHHHC-CCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCc---hHHHHH----HHHHHHHHHHHHhCCCCHHHHH
Confidence 999997 8987777779999999999999999999999999544 666666 99999999999999888 6643
No 8
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=30.67 E-value=1.2e+02 Score=24.68 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=34.8
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHH--hhcccCChhhHHHHHHHhhcC
Q 021425 207 SVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITL--LLTQEFNFADSLHIWDTLLSD 272 (312)
Q Consensus 207 ~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~--lF~~~~~~~~~~riWD~~l~~ 272 (312)
+...++..+..+..-| .+|..++.+- -|++.+-+. ==.+.++++.++..|+.+|..
T Consensus 75 si~~lk~~l~~L~~~l--~d~~~Fk~~Y--------~ftF~~~~~~e~gqk~L~le~Ai~~W~Lll~~ 132 (221)
T 4gba_A 75 SIDGICARFPSLLTEA--KQEDKFKDLY--------RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ 132 (221)
T ss_dssp SHHHHHHHHHHHHHHT--TSHHHHHHHH--------HHHHHHHSCTTTTCSSEEHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHc--cCHHHHHHHH--------HHHHHHHhcCCccccCCCHHHHHHHHHHHcCC
Confidence 3444554454444444 4565544442 256665554 345788999999999999985
No 9
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=30.12 E-value=1.5e+02 Score=23.53 Aligned_cols=56 Identities=16% Similarity=0.387 Sum_probs=35.2
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcC
Q 021425 207 SVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSD 272 (312)
Q Consensus 207 ~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~ 272 (312)
+...++..+..+..-+ .+|..++.+- -|++.+.+--=.+.++++.++..|+.+|..
T Consensus 76 si~~lk~~l~~l~~~l--~d~~~Fk~~Y--------~ftF~~~re~gqk~L~~e~Ai~~W~lll~~ 131 (199)
T 3kev_A 76 SLEKLKRKLSSLRKEI--EDPSKFRAFY--------QFVFQYSKEPSQRSLPAETAMALWDVLLRG 131 (199)
T ss_dssp SHHHHHHHHHHHHHHT--TSHHHHHHHH--------HHHHHHHSCTTCSSBCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHc--cCHHHHHHHH--------HHHHHHHcCcCcCCCCHHHHHHHHHHHhCC
Confidence 4455555555554444 3565544442 256666554445788999999999999973
No 10
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*
Probab=29.09 E-value=98 Score=24.73 Aligned_cols=56 Identities=13% Similarity=0.360 Sum_probs=35.0
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcC
Q 021425 207 SVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSD 272 (312)
Q Consensus 207 ~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~ 272 (312)
+...++..+..+..-| .+|..++.+- -|++.+.+-==.+.++++.++..|+.+|..
T Consensus 74 si~~lk~~l~~l~~~l--~d~~~Fk~~Y--------~ftF~~~r~~gqk~L~~e~Ai~~W~lll~~ 129 (200)
T 3tdu_A 74 SIEKLKAQIPKMEQEL--KEPGRFKDFY--------QFTFNFAKNPGQKGLDLEMAIAYWNLVLNG 129 (200)
T ss_dssp SHHHHHHTHHHHHHHT--TSHHHHHHHH--------HHHHHHHSCTTCSSEEHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHHc--cCHHHHHHHH--------HHHHHHHcCcCcCcCCHHHHHHHHHHHcCC
Confidence 3444555555454444 3565544432 256666654445778999999999999984
No 11
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=28.28 E-value=17 Score=24.19 Aligned_cols=10 Identities=50% Similarity=0.843 Sum_probs=8.8
Q ss_pred CCCChHHHHH
Q 021425 154 YVQGMNEILA 163 (312)
Q Consensus 154 Y~QGm~~i~~ 163 (312)
|.|||.+.++
T Consensus 18 yfqgM~~~a~ 27 (96)
T 2js3_A 18 YFQGMTDTAA 27 (96)
T ss_dssp TTBSTTTHHH
T ss_pred eeccccccCH
Confidence 9999998874
Done!