Query 021426
Match_columns 312
No_of_seqs 127 out of 198
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:58:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mk4_A Peroxisomal biogenesis 100.0 8.2E-84 2.8E-88 610.7 25.9 292 1-311 15-328 (334)
2 1c4z_A E6AP, ubiquitin-protein 27.9 1.1E+02 0.0038 28.4 6.6 57 115-171 187-244 (358)
3 1fi6_A EH domain protein REPS1 25.3 1.5E+02 0.0053 20.9 5.7 40 153-192 53-92 (92)
4 3r2k_A Bacterioferritin, BFR; 21.3 79 0.0027 24.8 3.7 34 119-152 20-53 (154)
5 3uoi_A Bacterioferritin, BFR; 19.6 89 0.0031 24.6 3.7 33 120-152 23-55 (161)
6 2y3q_A Bacterioferritin; metal 14.9 1.4E+02 0.0046 23.2 3.7 35 119-153 20-54 (158)
7 2kgr_A Intersectin-1; structur 14.4 3.6E+02 0.012 19.8 5.8 41 154-194 59-99 (111)
8 1eh2_A EPS15; calcium binding, 13.8 2.6E+02 0.009 20.6 4.9 42 153-194 58-99 (106)
9 3fvb_A Bacterioferritin; niaid 13.8 1.4E+02 0.0047 24.4 3.5 33 120-152 42-74 (182)
10 3mq7_A Bone marrow stromal ant 13.7 3.9E+02 0.013 20.9 5.7 21 10-31 49-69 (121)
No 1
>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein transport; 2.42A {Homo sapiens} PDB: 3ajb_A
Probab=100.00 E-value=8.2e-84 Score=610.71 Aligned_cols=292 Identities=27% Similarity=0.404 Sum_probs=252.2
Q ss_pred ChhhHHHHhhhhHHhHHHHHHHHHHHHHHHhcCchHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021426 1 MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTM 80 (312)
Q Consensus 1 l~~~Fe~~Q~~c~~T~l~~llp~L~~~i~~~ld~e~i~~~Lk~~K~~~~~l~~~~K~eLW~eLKi~sftR~~t~iY~~sl 80 (312)
+++|||+||+||++|++ +++|+++++|++++|+|+||++||++ |++|+||||+|||+||||++|++|++||
T Consensus 15 ~~~hFe~tQ~~c~~Tvl-~llp~l~~~i~~~ld~e~lt~~Lk~~--------~~~K~eLW~eLKi~s~TR~~t~iY~~sl 85 (334)
T 3mk4_A 15 RQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALLKNR--------PSNKLEIWEDLKIISFTRSTVAVYSTCM 85 (334)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHTTC--------CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHhC--------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999997 99999999999999999999999986 7799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCccc
Q 021426 81 VSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIF 160 (312)
Q Consensus 81 L~ll~rvQLNiLgr~~Yl~s~~~~~~~~~~~~~~~~~~~~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~~~~lk~~l 160 (312)
|++++|+||||||||.|++++....++ .....|.++||+||++||||+|+||.+++++|+++|+++|++++||+.+
T Consensus 86 L~ll~RvQLNILGr~~Yl~sa~~~~~~----~~~~~~~~~qq~yLs~s~~ll~~G~~~l~~~Ve~~V~~v~~~~~lk~~l 161 (334)
T 3mk4_A 86 LVVLLRVQLNIIGGYIYLDNAAVGKNG----TTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSL 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC----------CCCSSCHHHHHHHHGGGHHHHTHHHHHHHHHHHHHHHHHHTTCCSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC----CCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCCCCccccc
Confidence 999999999999999999997532221 1235788999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcC---------CCcccccccccccchhhhhhhhcCCCCCcccCchhHHHHHHHHHHHhhcCHh
Q 021426 161 NTVVLHETFMQILEVFMSM---------GSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAE 231 (312)
Q Consensus 161 s~~~l~~l~~~i~~~~~~~---------~~~~~~~~~LlP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~ET~d~leS~~ 231 (312)
|+++|++++++||+.+++. ++.+.|.+||+|++... .+.++++. ..+++.+++|+|||+|+||||+
T Consensus 162 s~~~l~~l~~~Ir~~ve~~~~~~~~~~~~~~~~~~~yLlP~~~~~-~~~q~~~~----~~~~~~l~~Ll~ET~d~leS~~ 236 (334)
T 3mk4_A 162 SLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLSHYMMPDEETP-LAVQACGL----SPRDITTIKLLNETRDMLESPD 236 (334)
T ss_dssp EHHHHHHHHHHHHHHHHTC-------------CGGGGTSCCCCC---------C----CHHHHHHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHHHHHHHHHhccccccccccCCcccchHHhcCCCchhH-HHHhccCC----CCccHHHHHHHHHHHHHHcCHH
Confidence 9999999999999999863 24578999999997543 33333221 2345789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CCCCCcchhhhhhhhhhccccccCCCchHHHHHHhChhhH
Q 021426 232 YTSVVDMSFKAAVDALIDEMRVQSGGS-------------LISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV 298 (312)
Q Consensus 232 f~~Vl~~~l~~~f~~l~~~~~~~~~~~-------------~~~~~~LAkllp~v~~~~~~l~~~~~~n~yl~~l~~~~el 298 (312)
|.+|++.|+|++|+.++|++++.|++. +..++||||+||+|++|+|.+++ |.||+|++.|.++++|
T Consensus 237 f~~Vl~~~l~~~F~~l~d~~~~~f~~~~~~~~~~~~~~~~~~v~~~LAklLpvv~~q~~~i~~-~~pN~~lq~l~~~~el 315 (334)
T 3mk4_A 237 FSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCS-ETPSHFVQDLLTMEQV 315 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC-----------------CEEEHHHHHHHHHTTHHHHTC-CSTTSHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcccccccccchhhhHHHHHHHHHhhhhhccc-CCchHHHHHHHhhHHH
Confidence 999999999999999999999877421 13689999999999999998765 6899999999999999
Q ss_pred HHHHHHHhccCCC
Q 021426 299 ELFFTLLYANMSD 311 (312)
Q Consensus 299 ~~fsA~vYs~~~~ 311 (312)
++|||+||++|+.
T Consensus 316 ~~f~A~VY~sf~~ 328 (334)
T 3mk4_A 316 KDFAANVYEAFST 328 (334)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999864
No 2
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=27.85 E-value=1.1e+02 Score=28.36 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHH
Q 021426 115 LIDRDDQQKFLAS-VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQ 171 (312)
Q Consensus 115 ~~~~~~eq~fLs~-s~~ll~~G~~~l~~~V~~~V~~v~~~~~lk~~ls~~~l~~l~~~ 171 (312)
.++.++.+.|... +.|.+++|+.+-++..++...+++..-.++..++.+|++.++.-
T Consensus 187 ~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G 244 (358)
T 1c4z_A 187 PITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICG 244 (358)
T ss_dssp BCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhhc
Confidence 3677899999986 68999999999999999999999987677767899999887753
No 3
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=25.28 E-value=1.5e+02 Score=20.87 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=28.6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHhcCCCccccccccccc
Q 021426 153 GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQ 192 (312)
Q Consensus 153 ~~~lk~~ls~~~l~~l~~~i~~~~~~~~~~~~~~~~LlP~ 192 (312)
+.+=...++++||..++..+.....+..-|..+-..|+|+
T Consensus 53 D~d~dG~i~~~EF~~~~~~~~~~~~g~~lp~~lp~~l~p~ 92 (92)
T 1fi6_A 53 DFDKDGALTLDEFCAAFHLVVARKNGYDLPEKLPESLMPK 92 (92)
T ss_dssp CTTCSSEEEHHHHHHHHHHHHHHHHSCCCCCCSCSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccCCHhhCCC
Confidence 4445667999999999988876655543456667777765
No 4
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=21.29 E-value=79 Score=24.78 Aligned_cols=34 Identities=6% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 021426 119 DDQQKFLASVDYLANYGMQAMISNVQAAADEALK 152 (312)
Q Consensus 119 ~~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~ 152 (312)
..-.+|++++||+-+.|+..+....+....++.+
T Consensus 20 ~a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~ 53 (154)
T 3r2k_A 20 AARDQYFIHSRMYEDWGFSKLYERLNHEMEEETQ 53 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999998887744
No 5
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=19.58 E-value=89 Score=24.60 Aligned_cols=33 Identities=9% Similarity=0.327 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 021426 120 DQQKFLASVDYLANYGMQAMISNVQAAADEALK 152 (312)
Q Consensus 120 ~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~ 152 (312)
.-.+|++++||+=+.|+..+....+....+..+
T Consensus 23 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~ 55 (161)
T 3uoi_A 23 AINQYFLHSKMQDNWGFTELAAHTRAESFDEMR 55 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999988877654
No 6
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=14.94 E-value=1.4e+02 Score=23.24 Aligned_cols=35 Identities=9% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 021426 119 DDQQKFLASVDYLANYGMQAMISNVQAAADEALKG 153 (312)
Q Consensus 119 ~~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~~ 153 (312)
..-..|+.++||+-+.|++.+....+....+..++
T Consensus 20 ~a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~H 54 (158)
T 2y3q_A 20 VAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKH 54 (158)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999988888887776543
No 7
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=14.39 E-value=3.6e+02 Score=19.78 Aligned_cols=41 Identities=7% Similarity=-0.047 Sum_probs=30.0
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHhcCCCcccccccccccch
Q 021426 154 KQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDI 194 (312)
Q Consensus 154 ~~lk~~ls~~~l~~l~~~i~~~~~~~~~~~~~~~~LlP~~~ 194 (312)
.+=...++++||..++..+.....+..-+..+...|+|+..
T Consensus 59 ~d~dG~I~~~EF~~~~~~~~~~~~G~~lp~~lp~~l~pps~ 99 (111)
T 2kgr_A 59 IDQDGKLTAEEFILAMHLIDVAMSGQPLPPVLPPEYIPPSF 99 (111)
T ss_dssp SSCCSEEEHHHHHHHHHHHHHHHTTCCCCSSCCGGGSCTTT
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHCCCCCccccCcccCCCcc
Confidence 34456799999999999888776654445666778887754
No 8
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=13.84 E-value=2.6e+02 Score=20.65 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=31.5
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHhcCCCcccccccccccch
Q 021426 153 GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDI 194 (312)
Q Consensus 153 ~~~lk~~ls~~~l~~l~~~i~~~~~~~~~~~~~~~~LlP~~~ 194 (312)
+.+=...++++||..++..+.....+..-|..+-..|+||..
T Consensus 58 D~d~dG~id~~EF~~~m~~~~~~~~g~~lP~~LP~~l~pps~ 99 (106)
T 1eh2_A 58 DIDHDGMLDRDEFAVAMFLVYCALEKEPVPMSLPPALVPPSK 99 (106)
T ss_dssp CSSCSSBCCHHHHHHHHHHHHHHHHTCCCCSSCCTTTSCTTC
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHHcCCCCCCCCCcccCChhh
Confidence 444566899999999999988777764445667777887754
No 9
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=13.81 E-value=1.4e+02 Score=24.40 Aligned_cols=33 Identities=9% Similarity=0.250 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 021426 120 DQQKFLASVDYLANYGMQAMISNVQAAADEALK 152 (312)
Q Consensus 120 ~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~ 152 (312)
.-.+|++++||+-+.|+..+....+....+..+
T Consensus 42 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~eE~~ 74 (182)
T 3fvb_A 42 AVNQYWLHYRLLNDWGYTRLAKKEREESIEEMH 74 (182)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 678899999999888999999999988887654
No 10
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=13.69 E-value=3.9e+02 Score=20.87 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=15.8
Q ss_pred hhhHHhHHHHHHHHHHHHHHHh
Q 021426 10 RIADATTLPHAMHYLSIRIAEE 31 (312)
Q Consensus 10 ~~c~~T~l~~llp~L~~~i~~~ 31 (312)
.+|+.|++ .|..+|.+.-...
T Consensus 49 aTCNqTV~-tL~~SL~~ekaq~ 69 (121)
T 3mq7_A 49 ATANHTVM-ALMASLDAEKAQG 69 (121)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHH
Confidence 69999997 7778877755443
Done!