Query 021429
Match_columns 312
No_of_seqs 195 out of 1536
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.2E-45 2.5E-50 351.9 31.6 287 9-312 7-314 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 3.6E-41 7.7E-46 318.9 24.7 226 69-312 40-275 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 3.1E-39 6.7E-44 310.0 27.6 189 70-295 115-323 (482)
4 cd06096 Plasmepsin_5 Plasmepsi 100.0 8.4E-37 1.8E-41 282.1 23.8 201 74-292 2-223 (326)
5 cd05478 pepsin_A Pepsin A, asp 100.0 8.2E-37 1.8E-41 281.1 23.7 188 70-296 5-204 (317)
6 cd06098 phytepsin Phytepsin, a 100.0 8.9E-37 1.9E-41 280.9 22.8 185 70-296 5-207 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 1.1E-36 2.4E-41 281.3 23.1 185 71-293 2-201 (325)
8 cd05488 Proteinase_A_fungi Fun 100.0 5.8E-36 1.2E-40 275.9 23.6 193 70-303 5-213 (320)
9 cd05477 gastricsin Gastricsins 100.0 8.5E-36 1.9E-40 274.5 23.6 181 73-295 1-197 (318)
10 cd05486 Cathespin_E Cathepsin 100.0 4.8E-36 1E-40 275.9 20.8 179 76-296 1-196 (316)
11 cd05485 Cathepsin_D_like Cathe 100.0 1.8E-35 4E-40 273.5 22.2 187 70-294 6-207 (329)
12 cd06097 Aspergillopepsin_like 100.0 5.1E-35 1.1E-39 264.4 21.7 179 76-292 1-192 (278)
13 cd05487 renin_like Renin stimu 100.0 1.2E-34 2.5E-39 267.8 22.5 188 70-296 3-205 (326)
14 PTZ00147 plasmepsin-1; Provisi 100.0 2.1E-34 4.6E-39 274.6 22.5 181 70-292 134-329 (453)
15 cd05475 nucellin_like Nucellin 100.0 1.3E-33 2.9E-38 254.6 22.9 168 74-293 1-173 (273)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 1E-33 2.2E-38 269.4 22.3 191 70-304 133-340 (450)
17 cd05473 beta_secretase_like Be 100.0 1.9E-33 4.1E-38 263.5 22.5 195 74-312 2-218 (364)
18 cd05472 cnd41_like Chloroplast 100.0 1E-33 2.2E-38 258.5 19.5 171 75-312 1-178 (299)
19 cd05489 xylanase_inhibitor_I_l 100.0 1.5E-33 3.2E-38 263.3 20.4 207 82-312 2-236 (362)
20 cd05471 pepsin_like Pepsin-lik 100.0 5.6E-33 1.2E-37 250.6 22.4 180 76-292 1-195 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 1.6E-32 3.4E-37 246.5 20.3 172 75-312 1-183 (265)
22 PF14543 TAXi_N: Xylanase inhi 100.0 3.3E-32 7.1E-37 227.0 15.0 162 76-261 1-164 (164)
23 PF00026 Asp: Eukaryotic aspar 100.0 1.5E-30 3.2E-35 238.8 13.8 192 75-304 1-208 (317)
24 cd05474 SAP_like SAPs, pepsin- 100.0 3.6E-29 7.7E-34 227.9 19.0 162 75-312 2-185 (295)
25 cd05470 pepsin_retropepsin_lik 99.9 2.5E-23 5.3E-28 161.7 12.2 108 78-223 1-109 (109)
26 cd05483 retropepsin_like_bacte 97.9 4.3E-05 9.3E-10 57.0 6.9 94 74-225 1-94 (96)
27 TIGR02281 clan_AA_DTGA clan AA 95.9 0.042 9.1E-07 43.2 7.3 32 72-105 8-39 (121)
28 PF13650 Asp_protease_2: Aspar 95.6 0.087 1.9E-06 38.3 7.8 27 78-106 1-27 (90)
29 cd05479 RP_DDI RP_DDI; retrope 94.3 0.37 8.1E-06 37.9 8.6 34 72-107 13-46 (124)
30 cd05484 retropepsin_like_LTR_2 93.2 0.11 2.4E-06 38.3 3.6 29 76-106 1-29 (91)
31 PF13975 gag-asp_proteas: gag- 90.6 0.5 1.1E-05 33.3 4.3 35 72-108 5-39 (72)
32 PF00077 RVP: Retroviral aspar 87.1 0.92 2E-05 33.8 3.9 28 77-106 7-34 (100)
33 COG3577 Predicted aspartyl pro 83.6 3.6 7.9E-05 35.1 6.1 74 71-185 101-174 (215)
34 cd06095 RP_RTVL_H_like Retrope 79.1 2.6 5.7E-05 30.6 3.4 26 79-106 2-27 (86)
35 PF11925 DUF3443: Protein of u 78.9 5.9 0.00013 36.9 6.3 58 162-226 82-149 (370)
36 cd05482 HIV_retropepsin_like R 77.7 3.2 6.8E-05 30.6 3.4 25 79-105 2-26 (87)
37 PF07172 GRP: Glycine rich pro 55.5 8.2 0.00018 28.9 1.7 13 1-13 1-13 (95)
38 PF09668 Asp_protease: Asparty 55.1 22 0.00047 28.0 4.1 36 73-110 22-57 (124)
39 PF12384 Peptidase_A2B: Ty3 tr 54.4 18 0.00039 29.9 3.7 28 78-105 35-62 (177)
40 TIGR03698 clan_AA_DTGF clan AA 41.1 38 0.00082 25.7 3.5 27 78-104 2-33 (107)
41 cd05481 retropepsin_like_LTR_1 39.8 25 0.00054 26.0 2.3 23 80-104 3-26 (93)
42 cd05475 nucellin_like Nucellin 31.1 72 0.0016 28.3 4.2 32 74-105 157-194 (273)
43 PF08194 DIM: DIM protein; In 30.7 72 0.0016 19.3 2.7 19 11-29 10-28 (36)
44 cd06098 phytepsin Phytepsin, a 22.6 97 0.0021 28.2 3.5 32 74-105 188-227 (317)
45 PF08284 RVP_2: Retroviral asp 22.2 1.3E+02 0.0028 23.8 3.8 31 73-105 19-49 (135)
46 cd06094 RP_Saci_like RP_Saci_l 21.9 87 0.0019 23.1 2.4 20 87-106 8-27 (89)
47 PLN03146 aspartyl protease fam 21.0 94 0.002 29.9 3.2 16 90-105 309-324 (431)
48 cd00303 retropepsin_like Retro 20.9 95 0.0021 20.5 2.5 21 80-102 3-23 (92)
49 PRK11372 lysozyme inhibitor; P 20.2 66 0.0014 24.7 1.6 14 1-14 1-14 (109)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=351.91 Aligned_cols=287 Identities=28% Similarity=0.470 Sum_probs=222.0
Q ss_pred HHHHHHHHHHhhcccCcceeEEeeeecCCc------c----cCHHHHHHHHHHHHHHHhcc--cCcCCCCCCCCCCceeE
Q 021429 9 LCIVLIATAAVGGVSSNHGVFSVKYRYAGR------E----RSLSLLKEHDARRQQRILAG--VDLPLGGSSRPDGVGLY 76 (312)
Q Consensus 9 l~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~Y 76 (312)
|.++.+.+.+...+.....+++|.||+++. . ..+.+..+++.+|.+++... ...|+. +.....+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Y 85 (431)
T PLN03146 7 LCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQ-SDLISNGGEY 85 (431)
T ss_pred HHHHHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCccc-cCcccCCccE
Confidence 344444455555666677899999988641 1 22344456666666665322 223333 1223457899
Q ss_pred EEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCCCCC
Q 021429 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANT 156 (312)
Q Consensus 77 ~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~~~~ 156 (312)
+++|.||||+|++.|++||||+++||+|.+|..|..+. ++.|||++|+||+.++|.+++|..... ...|..++
T Consensus 86 ~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~-----~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~~ 158 (431)
T PLN03146 86 LMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV-----SPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDEN 158 (431)
T ss_pred EEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC-----CCcccCCCCCCCcccCCCCcccccCCC--CCCCCCCC
Confidence 99999999999999999999999999999999998653 379999999999999999999986543 23476667
Q ss_pred CCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCCCcHHHHHHh
Q 021429 157 SCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLAS 236 (312)
Q Consensus 157 ~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~ 236 (312)
.|.|.+.|++|+.+.|.+++|+|+|++..+. ...++++.|||+++..+.|. ...+||||||+++.|+++||..
T Consensus 159 ~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sql~~ 231 (431)
T PLN03146 159 TCTYSYSYGDGSFTKGNLAVETLTIGSTSGR---PVSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQLGS 231 (431)
T ss_pred CCeeEEEeCCCCceeeEEEEEEEEeccCCCC---cceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHHhhH
Confidence 7999999999998799999999999874322 12478999999998776553 2578999999999999999986
Q ss_pred cCCCCCeeEEeecCC----CCcceEEeCCCCC---CCceeecCCCC--CCcEEEEEEEEEECCEEeccCCcccccCCCCC
Q 021429 237 SGGVRKMFAHCLDGI----NGGGIFAIGHVVQ---PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKD 307 (312)
Q Consensus 237 ~g~i~~~Fs~~l~~~----~~~G~l~fGg~d~---~~~~~~pl~~~--~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~ 307 (312)
+ +.++|||||.+. ...|.|+||+... ..+.||||+.+ +.+|.|.|++|+||++++++++..|...+.++
T Consensus 232 ~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~ 309 (431)
T PLN03146 232 S--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGN 309 (431)
T ss_pred h--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCc
Confidence 3 556999999642 2479999999642 34899999743 46899999999999999999888876555688
Q ss_pred eEEcC
Q 021429 308 NISAA 312 (312)
Q Consensus 308 ~iiDS 312 (312)
+||||
T Consensus 310 ~iiDS 314 (431)
T PLN03146 310 IIIDS 314 (431)
T ss_pred EEEeC
Confidence 99997
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-41 Score=318.94 Aligned_cols=226 Identities=35% Similarity=0.657 Sum_probs=194.5
Q ss_pred CCCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC-CCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCC
Q 021429 69 RPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK-ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (312)
Q Consensus 69 ~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~-~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~ 147 (312)
..+..++|+++|.||||||+|.|+|||||+++||+|..|. .|..+.. +.|||++|+||+.+.|.++.|......
T Consensus 40 ~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~-----~~f~p~~SSt~~~~~c~~~~c~~~~~~ 114 (398)
T KOG1339|consen 40 SSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHN-----PIFDPSASSTYKSVGCSSPRCKSLPQS 114 (398)
T ss_pred ccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCC-----CccCccccccccccCCCCccccccccC
Confidence 3667889999999999999999999999999999999999 7976421 449999999999999999999988633
Q ss_pred CCCCCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCC
Q 021429 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (312)
Q Consensus 148 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (312)
|.+++.|.|.+.|++|+.+.|.+++|+|+|++.+ ....+++.|||+....+. .... .+++||||||+..
T Consensus 115 ----~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~-~~~dGIlGLg~~~ 183 (398)
T KOG1339|consen 115 ----CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLF-AAFDGILGLGRGS 183 (398)
T ss_pred ----cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccc-cccceEeecCCCC
Confidence 8889999999999997777999999999999842 124678999999998765 2212 4689999999999
Q ss_pred CcHHHHHHhcCCCCCeeEEeecCCC----CcceEEeCCCCC----CCceeecCCCCCC-cEEEEEEEEEECCEEeccCCc
Q 021429 228 SSMISQLASSGGVRKMFAHCLDGIN----GGGIFAIGHVVQ----PEVNKTPLVPNQP-HYSINMTAVQVGLDFLNLPTD 298 (312)
Q Consensus 228 ~s~~~~l~~~g~i~~~Fs~~l~~~~----~~G~l~fGg~d~----~~~~~~pl~~~~~-~~~v~l~~i~vg~~~~~~~~~ 298 (312)
.+++.|+.......++||+||.+.. .+|.|+||++|. +.+.|+||+.... +|+|.|++|+||++. ++++.
T Consensus 184 ~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~~ 262 (398)
T KOG1339|consen 184 LSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGSS 262 (398)
T ss_pred ccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCcc
Confidence 9999999988777669999999862 479999999985 4688999986554 999999999999999 88888
Q ss_pred ccccCCCCCeEEcC
Q 021429 299 VFGVGDNKDNISAA 312 (312)
Q Consensus 299 ~~~~~~~~~~iiDS 312 (312)
.|..+ .+++||||
T Consensus 263 ~~~~~-~~~~iiDS 275 (398)
T KOG1339|consen 263 LFCTD-GGGAIIDS 275 (398)
T ss_pred eEecC-CCCEEEEC
Confidence 88765 68999997
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=3.1e-39 Score=309.96 Aligned_cols=189 Identities=22% Similarity=0.386 Sum_probs=159.7
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCC--CCCCCCCCccCcccCCCCCCccceecCCCccccCCCCC
Q 021429 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (312)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~--C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~ 147 (312)
++.+.+|+++|+||||||+|.|+|||||+++||+|..|.. |.. |+.|||++|+||+.+.+..
T Consensus 115 n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~-------~~~yd~s~SSTy~~~~~~~--------- 178 (482)
T PTZ00165 115 NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAP-------HRKFDPKKSSTYTKLKLGD--------- 178 (482)
T ss_pred cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccc-------cCCCCccccCCcEecCCCC---------
Confidence 8899999999999999999999999999999999999974 543 4899999999999742211
Q ss_pred CCCCCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccC-CCCCCCccccceeeecCCC
Q 021429 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGKS 226 (312)
Q Consensus 148 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GIlGLg~~ 226 (312)
....+.++|++|+. .|.+++|+|+|++. .++++.||+++..++ .|. ..++|||||||++
T Consensus 179 --------~~~~~~i~YGsGs~-~G~l~~DtV~ig~l--------~i~~q~FG~a~~~s~~~f~---~~~~DGILGLg~~ 238 (482)
T PTZ00165 179 --------ESAETYIQYGTGEC-VLALGKDTVKIGGL--------KVKHQSIGLAIEESLHPFA---DLPFDGLVGLGFP 238 (482)
T ss_pred --------ccceEEEEeCCCcE-EEEEEEEEEEECCE--------EEccEEEEEEEeccccccc---cccccceeecCCC
Confidence 12256799999986 89999999999875 378899999998754 343 2578999999987
Q ss_pred CC---------cHHHHHHhcCCC-CCeeEEeecCC-CCcceEEeCCCCC------CCceeecCCCCCCcEEEEEEEEEEC
Q 021429 227 NS---------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ------PEVNKTPLVPNQPHYSINMTAVQVG 289 (312)
Q Consensus 227 ~~---------s~~~~l~~~g~i-~~~Fs~~l~~~-~~~G~l~fGg~d~------~~~~~~pl~~~~~~~~v~l~~i~vg 289 (312)
.. +++++|++||+| +++||+||++. +.+|+|+|||+|+ +++.|+|+. ...+|+|.+++|+||
T Consensus 239 ~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~vg 317 (482)
T PTZ00165 239 DKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDILID 317 (482)
T ss_pred cccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEEEC
Confidence 53 589999999999 89999999865 4579999999983 468999996 567999999999999
Q ss_pred CEEecc
Q 021429 290 LDFLNL 295 (312)
Q Consensus 290 ~~~~~~ 295 (312)
++.+..
T Consensus 318 g~~~~~ 323 (482)
T PTZ00165 318 GKSLGF 323 (482)
T ss_pred CEEeee
Confidence 988765
No 4
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=8.4e-37 Score=282.11 Aligned_cols=201 Identities=26% Similarity=0.508 Sum_probs=163.6
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCC
Q 021429 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (312)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~ 153 (312)
++|+++|.||||+|++.|+|||||+++||+|..|..|..+. ++.|||++|+|++.+.|++..|.. ...|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~-----~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~- 70 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM-----EPPYNLNNSITSSILYCDCNKCCY-----CLSC- 70 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC-----CCCcCcccccccccccCCCccccc-----cCcC-
Confidence 58999999999999999999999999999999999997653 378999999999999999999953 2334
Q ss_pred CCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCCC----c
Q 021429 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----S 229 (312)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~----s 229 (312)
.++.|.|.+.|++|+.+.|.+++|+|+|++..... .+.....+.|||+....+.|.. ...+||||||+... +
T Consensus 71 ~~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~~---~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 71 LNNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFLT---QQATGILGLSLTKNNGLPT 146 (326)
T ss_pred CCCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCcccc---cccceEEEccCCcccccCc
Confidence 35679999999999877999999999998753210 0111245889999987765543 56899999999864 2
Q ss_pred HHHHHHhcCCC-C--CeeEEeecCCCCcceEEeCCCCC--------------CCceeecCCCCCCcEEEEEEEEEECCEE
Q 021429 230 MISQLASSGGV-R--KMFAHCLDGINGGGIFAIGHVVQ--------------PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (312)
Q Consensus 230 ~~~~l~~~g~i-~--~~Fs~~l~~~~~~G~l~fGg~d~--------------~~~~~~pl~~~~~~~~v~l~~i~vg~~~ 292 (312)
...+|.+++.+ . ++||+||++ ..|+|+||++|+ +++.|+|+.. +.+|.|.+++|+|+++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~--~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~-~~~y~v~l~~i~vg~~~ 223 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSE--DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR-KYYYYVKLEGLSVYGTT 223 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcC--CCeEEEECccChhhhcccccccccccCCceEEeccC-CceEEEEEEEEEEcccc
Confidence 44456666665 4 899999986 479999999984 5689999864 47999999999999886
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=8.2e-37 Score=281.13 Aligned_cols=188 Identities=27% Similarity=0.440 Sum_probs=159.9
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCC
Q 021429 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (312)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~ 149 (312)
++.+..|+++|.||||+|++.|+|||||+++||+|..|..|. |..++.|||++|+|++.
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~-----c~~~~~f~~~~Sst~~~---------------- 63 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQA-----CSNHNRFNPRQSSTYQS---------------- 63 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccc-----ccccCcCCCCCCcceee----------------
Confidence 778999999999999999999999999999999999987432 12347999999999987
Q ss_pred CCCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCCC-
Q 021429 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (312)
Q Consensus 150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~- 228 (312)
..+.|.+.|++|+. .|.+++|+|+|++.. ++++.|||+....+.+.. ....+||||||++..
T Consensus 64 ------~~~~~~~~yg~gs~-~G~~~~D~v~ig~~~--------i~~~~fg~~~~~~~~~~~--~~~~dGilGLg~~~~s 126 (317)
T cd05478 64 ------TGQPLSIQYGTGSM-TGILGYDTVQVGGIS--------DTNQIFGLSETEPGSFFY--YAPFDGILGLAYPSIA 126 (317)
T ss_pred ------CCcEEEEEECCceE-EEEEeeeEEEECCEE--------ECCEEEEEEEecCccccc--cccccceeeeccchhc
Confidence 45689999999985 999999999998753 678999999877654432 235799999998743
Q ss_pred -----cHHHHHHhcCCC-CCeeEEeecCC-CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEEeccC
Q 021429 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (312)
Q Consensus 229 -----s~~~~l~~~g~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~ 296 (312)
+++++|++||+| +++||+||.+. ..+|+|+||++|+ +++.|+|+. .+.+|.|.|++|+|+++.+...
T Consensus 127 ~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~~~ 204 (317)
T cd05478 127 SSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVACS 204 (317)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEccC
Confidence 599999999999 79999999875 2468999999984 689999995 5679999999999999998653
No 6
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=8.9e-37 Score=280.89 Aligned_cols=185 Identities=28% Similarity=0.439 Sum_probs=158.1
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC---CCCCCCCCCccCcccCCCCCCccceecCCCccccCCCC
Q 021429 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK---ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (312)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~---~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~ 146 (312)
++.+.+|+++|.||||+|++.|+|||||+++||+|..|. .|..+ +.|||++|+|++.
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~-------~~y~~~~SsT~~~------------- 64 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH-------SKYKSSKSSTYKK------------- 64 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc-------CcCCcccCCCccc-------------
Confidence 778999999999999999999999999999999999985 56643 7899999999986
Q ss_pred CCCCCCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccC-CCCCCCccccceeeecCC
Q 021429 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGK 225 (312)
Q Consensus 147 ~~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GIlGLg~ 225 (312)
....+.+.|++|+. .|.+++|+|+|++. .++++.||+++...+ .|.. ..++||||||+
T Consensus 65 ---------~~~~~~i~Yg~G~~-~G~~~~D~v~ig~~--------~v~~~~f~~~~~~~~~~~~~---~~~dGilGLg~ 123 (317)
T cd06098 65 ---------NGTSASIQYGTGSI-SGFFSQDSVTVGDL--------VVKNQVFIEATKEPGLTFLL---AKFDGILGLGF 123 (317)
T ss_pred ---------CCCEEEEEcCCceE-EEEEEeeEEEECCE--------EECCEEEEEEEecCCccccc---cccceeccccc
Confidence 35578999999985 89999999999875 377899999987644 2322 46899999998
Q ss_pred CCC------cHHHHHHhcCCC-CCeeEEeecCC---CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCE
Q 021429 226 SNS------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLD 291 (312)
Q Consensus 226 ~~~------s~~~~l~~~g~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~ 291 (312)
+.. +++.+|++||+| +++||+||.+. ..+|+|+||++|+ ++++|+|+. ...+|.|.+++|+|+++
T Consensus 124 ~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~ 202 (317)
T cd06098 124 QEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGK 202 (317)
T ss_pred cchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCE
Confidence 754 478899999999 78999999864 2479999999985 678999996 56799999999999999
Q ss_pred EeccC
Q 021429 292 FLNLP 296 (312)
Q Consensus 292 ~~~~~ 296 (312)
.+...
T Consensus 203 ~~~~~ 207 (317)
T cd06098 203 STGFC 207 (317)
T ss_pred Eeeec
Confidence 87653
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.1e-36 Score=281.27 Aligned_cols=185 Identities=26% Similarity=0.444 Sum_probs=155.3
Q ss_pred CCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCC
Q 021429 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (312)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~ 150 (312)
+.+.+|+++|.||||+|++.|+|||||+++||+|..|..|. ..|..++.|+|++|+||+.
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~C~~~~~y~~~~SsT~~~----------------- 61 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD---IACWLHHKYNSSKSSTYVK----------------- 61 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC---ccccCcCcCCcccCcceee-----------------
Confidence 56899999999999999999999999999999999887431 1233458999999999986
Q ss_pred CCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCC-CCCCCccccceeeecCCCCC-
Q 021429 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKSNS- 228 (312)
Q Consensus 151 ~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GIlGLg~~~~- 228 (312)
..|.|.+.|++|++ .|.+++|+|+|++.. ++++.|||++...+. |.. ...+||||||++..
T Consensus 62 -----~~~~~~i~Yg~G~~-~G~~~~D~v~~g~~~--------~~~~~Fg~~~~~~~~~~~~---~~~dGilGLg~~~~s 124 (325)
T cd05490 62 -----NGTEFAIQYGSGSL-SGYLSQDTVSIGGLQ--------VEGQLFGEAVKQPGITFIA---AKFDGILGMAYPRIS 124 (325)
T ss_pred -----CCcEEEEEECCcEE-EEEEeeeEEEECCEE--------EcCEEEEEEeeccCCcccc---eeeeEEEecCCcccc
Confidence 45789999999985 999999999998753 778999999877652 322 46799999998754
Q ss_pred -----cHHHHHHhcCCC-CCeeEEeecCC---CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEEe
Q 021429 229 -----SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFL 293 (312)
Q Consensus 229 -----s~~~~l~~~g~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~ 293 (312)
+++++|++||+| +++||+||.+. ..+|+|+||++|+ +++.|+|+. .+.+|.|.|++|+||++..
T Consensus 125 ~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~ 201 (325)
T cd05490 125 VDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGLT 201 (325)
T ss_pred ccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCeee
Confidence 588999999999 89999999864 2369999999984 689999985 4679999999999998754
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.8e-36 Score=275.86 Aligned_cols=193 Identities=23% Similarity=0.414 Sum_probs=161.8
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCC
Q 021429 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (312)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~ 147 (312)
++.+.+|+++|+||||+|++.|+|||||+++||+|..|. .|.. ++.|++++|+|++.
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~-------~~~y~~~~Sst~~~-------------- 63 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFL-------HSKYDSSASSTYKA-------------- 63 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCC-------cceECCCCCcceee--------------
Confidence 677899999999999999999999999999999999997 4654 37899999999986
Q ss_pred CCCCCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCC
Q 021429 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (312)
Q Consensus 148 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (312)
..|.|.+.|++|++ .|.+++|++.+++.. ++++.|||++...+.... ....+||||||++.
T Consensus 64 --------~~~~~~~~y~~g~~-~G~~~~D~v~ig~~~--------~~~~~f~~a~~~~g~~~~--~~~~dGilGLg~~~ 124 (320)
T cd05488 64 --------NGTEFKIQYGSGSL-EGFVSQDTLSIGDLT--------IKKQDFAEATSEPGLAFA--FGKFDGILGLAYDT 124 (320)
T ss_pred --------CCCEEEEEECCceE-EEEEEEeEEEECCEE--------ECCEEEEEEecCCCccee--eeeeceEEecCCcc
Confidence 56789999999985 999999999998753 678999999876553211 24579999999976
Q ss_pred C------cHHHHHHhcCCC-CCeeEEeecCC-CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEEecc
Q 021429 228 S------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (312)
Q Consensus 228 ~------s~~~~l~~~g~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~ 295 (312)
. +.+.+|++||+| +++||+||.+. ..+|+|+||++|+ +++.|+|+. ...+|.|.+++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEecc
Confidence 4 357799999999 89999999975 4579999999984 689999996 467999999999999988765
Q ss_pred C--CcccccC
Q 021429 296 P--TDVFGVG 303 (312)
Q Consensus 296 ~--~~~~~~~ 303 (312)
. ..++|+|
T Consensus 204 ~~~~~ivDSG 213 (320)
T cd05488 204 ENTGAAIDTG 213 (320)
T ss_pred CCCeEEEcCC
Confidence 4 2344443
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=8.5e-36 Score=274.49 Aligned_cols=181 Identities=27% Similarity=0.476 Sum_probs=155.4
Q ss_pred ceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCC--CCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCC
Q 021429 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (312)
Q Consensus 73 ~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~--C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~ 150 (312)
+..|+++|.||||+|++.|+|||||+++||+|..|.. |.. ++.|||++|+||+.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~-------~~~f~~~~SsT~~~----------------- 56 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTN-------HTKFNPSQSSTYST----------------- 56 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccc-------cCCCCcccCCCceE-----------------
Confidence 4689999999999999999999999999999999874 543 47999999999986
Q ss_pred CCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCC-CCCCCccccceeeecCCC---
Q 021429 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKS--- 226 (312)
Q Consensus 151 ~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GIlGLg~~--- 226 (312)
..|.|.+.|++|+. .|.+++|+|+|++. .++++.|||++...+. +. ..+.+||||||++
T Consensus 57 -----~~~~~~~~Yg~Gs~-~G~~~~D~i~~g~~--------~i~~~~Fg~~~~~~~~~~~---~~~~~GilGLg~~~~s 119 (318)
T cd05477 57 -----NGETFSLQYGSGSL-TGIFGYDTVTVQGI--------IITNQEFGLSETEPGTNFV---YAQFDGILGLAYPSIS 119 (318)
T ss_pred -----CCcEEEEEECCcEE-EEEEEeeEEEECCE--------EEcCEEEEEEEeccccccc---ccceeeEeecCccccc
Confidence 56799999999985 99999999999875 3688999999976542 22 2457999999985
Q ss_pred ---CCcHHHHHHhcCCC-CCeeEEeecCC--CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEEecc
Q 021429 227 ---NSSMISQLASSGGV-RKMFAHCLDGI--NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (312)
Q Consensus 227 ---~~s~~~~l~~~g~i-~~~Fs~~l~~~--~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~ 295 (312)
..+++++|+++|.| +++||+||++. ..+|+|+||++|+ +++.|+|+. ...+|.|.|++|+|+++.+.+
T Consensus 120 ~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~ 197 (318)
T cd05477 120 AGGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGW 197 (318)
T ss_pred ccCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEecc
Confidence 34799999999999 89999999874 2469999999984 679999985 467999999999999998754
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4.8e-36 Score=275.90 Aligned_cols=179 Identities=26% Similarity=0.471 Sum_probs=153.1
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCC
Q 021429 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (312)
Q Consensus 76 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~ 153 (312)
|+++|+||||+|+++|+|||||+++||+|..|. .|.. ++.|||++|+|++.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~-------~~~y~~~~SsT~~~-------------------- 53 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTK-------HNRFQPSESSTYVS-------------------- 53 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCc-------cceECCCCCccccc--------------------
Confidence 899999999999999999999999999999987 4654 37899999999986
Q ss_pred CCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCC-CCCCCccccceeeecCCCCC----
Q 021429 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKSNS---- 228 (312)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GIlGLg~~~~---- 228 (312)
..|.|.+.|++|+. .|.+++|+|+|++.. ++++.|||+....+. |. ...++||||||++..
T Consensus 54 --~~~~~~i~Yg~g~~-~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~~---~~~~dGilGLg~~~~s~~~ 119 (316)
T cd05486 54 --NGEAFSIQYGTGSL-TGIIGIDQVTVEGIT--------VQNQQFAESVSEPGSTFQ---DSEFDGILGLAYPSLAVDG 119 (316)
T ss_pred --CCcEEEEEeCCcEE-EEEeeecEEEECCEE--------EcCEEEEEeeccCccccc---ccccceEeccCchhhccCC
Confidence 56789999999985 999999999998753 678999998776542 32 246799999998754
Q ss_pred --cHHHHHHhcCCC-CCeeEEeecCC---CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEEeccC
Q 021429 229 --SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (312)
Q Consensus 229 --s~~~~l~~~g~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~ 296 (312)
+++++|++||+| +++||+||++. ..+|+|+||++|+ +++.|+|+. ...+|.|.+++|+|+++.+..+
T Consensus 120 ~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~~ 196 (316)
T cd05486 120 VTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFCS 196 (316)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEecC
Confidence 479999999999 78999999864 2479999999985 679999985 5679999999999999887543
No 11
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.8e-35 Score=273.47 Aligned_cols=187 Identities=27% Similarity=0.398 Sum_probs=158.1
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCC
Q 021429 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (312)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~ 149 (312)
++.+.+|+++|.||||+|++.|+|||||+++||+|..|..|.. .|..++.|||++|+|++.
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~c~~~~~y~~~~Sst~~~---------------- 66 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNI---ACLLHNKYDSTKSSTYKK---------------- 66 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCc---cccCCCeECCcCCCCeEE----------------
Confidence 7889999999999999999999999999999999998874321 222357899999999987
Q ss_pred CCCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCC-CCCCCccccceeeecCCCCC
Q 021429 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKSNS 228 (312)
Q Consensus 150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GIlGLg~~~~ 228 (312)
..|.|.+.|++|++ .|.+++|+++|++.. ++++.|||+.+..+. |. ....+||||||+...
T Consensus 67 ------~~~~~~i~Y~~g~~-~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~~---~~~~~GilGLg~~~~ 128 (329)
T cd05485 67 ------NGTEFAIQYGSGSL-SGFLSTDTVSVGGVS--------VKGQTFAEAINEPGLTFV---AAKFDGILGMGYSSI 128 (329)
T ss_pred ------CCeEEEEEECCceE-EEEEecCcEEECCEE--------ECCEEEEEEEecCCcccc---ccccceEEEcCCccc
Confidence 46789999999984 999999999998753 678999999876552 32 246799999999865
Q ss_pred c------HHHHHHhcCCC-CCeeEEeecCC---CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEEec
Q 021429 229 S------MISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLN 294 (312)
Q Consensus 229 s------~~~~l~~~g~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~ 294 (312)
+ ++.+|++||+| ++.||+||.+. ..+|+|+||++|+ +++.|+|+. .+.+|.|.+++|+|+++.+.
T Consensus 129 s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~~~~~ 207 (329)
T cd05485 129 SVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGEGEFC 207 (329)
T ss_pred cccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECCeeec
Confidence 3 68999999999 89999999864 2469999999984 679999996 56799999999999998764
No 12
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.1e-35 Score=264.42 Aligned_cols=179 Identities=27% Similarity=0.416 Sum_probs=152.3
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCCCC
Q 021429 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (312)
Q Consensus 76 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~~~ 155 (312)
|+++|+||||+|++.|+|||||+++||+|..|..|..+. +..||+++|+|++..
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~-----~~~y~~~~Sst~~~~--------------------- 54 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG-----HKLYDPSKSSTAKLL--------------------- 54 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc-----CCcCCCccCccceec---------------------
Confidence 899999999999999999999999999999999886442 367999999999862
Q ss_pred CCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCCC-------
Q 021429 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------- 228 (312)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~------- 228 (312)
..|.|.+.|++|+.+.|.+++|+|.|++.. ++++.||+++...+.+.. ....+||||||++..
T Consensus 55 ~~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~~--~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 55 PGATWSISYGDGSSASGIVYTDTVSIGGVE--------VPNQAIELATAVSASFFS--DTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred CCcEEEEEeCCCCeEEEEEEEEEEEECCEE--------ECCeEEEEEeecCccccc--cccccceeeeccccccccccCC
Confidence 357899999999867999999999998753 678999999987652221 256899999998743
Q ss_pred --cHHHHHHhcCCCCCeeEEeecCCCCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEE
Q 021429 229 --SMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (312)
Q Consensus 229 --s~~~~l~~~g~i~~~Fs~~l~~~~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~ 292 (312)
+++++|.+++. ++.||+||.+ +..|+|+|||+|+ ++++|+|+..+..+|.|.+++|+|+++.
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~ 192 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDA 192 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC-CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcc
Confidence 47889998865 8899999987 5689999999994 7899999976578999999999999884
No 13
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.2e-34 Score=267.84 Aligned_cols=188 Identities=26% Similarity=0.421 Sum_probs=156.8
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCC
Q 021429 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (312)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~ 149 (312)
++.+..|+++|+||||+|+++|+|||||+++||++..|..|.. .|..+..|||++|+|++.
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~c~~~~~y~~~~SsT~~~---------------- 63 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYT---ACVTHNLYDASDSSTYKE---------------- 63 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcch---hhcccCcCCCCCCeeeeE----------------
Confidence 6778999999999999999999999999999999988875321 233458999999999997
Q ss_pred CCCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccC-CCCCCCccccceeeecCCCCC
Q 021429 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGKSNS 228 (312)
Q Consensus 150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GIlGLg~~~~ 228 (312)
..|.|.+.|++|+ +.|.+++|+|++++.. + ++.||++.+..+ .|.. ...+||||||++..
T Consensus 64 ------~~~~~~~~Yg~g~-~~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~~~~~~---~~~dGilGLg~~~~ 124 (326)
T cd05487 64 ------NGTEFTIHYASGT-VKGFLSQDIVTVGGIP--------V-TQMFGEVTALPAIPFML---AKFDGVLGMGYPKQ 124 (326)
T ss_pred ------CCEEEEEEeCCce-EEEEEeeeEEEECCEE--------e-eEEEEEEEeccCCccce---eecceEEecCChhh
Confidence 5678999999998 5999999999998752 3 377999887643 2322 46799999998743
Q ss_pred ------cHHHHHHhcCCC-CCeeEEeecCC---CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEEec
Q 021429 229 ------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLN 294 (312)
Q Consensus 229 ------s~~~~l~~~g~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~ 294 (312)
+++++|++||+| +++||+||.+. ..+|+|+||++|+ ++++|+|+. .+.+|+|.|++|+|+++.+.
T Consensus 125 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 125 AIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEEEe
Confidence 589999999999 89999999874 3479999999984 678999985 56799999999999999876
Q ss_pred cC
Q 021429 295 LP 296 (312)
Q Consensus 295 ~~ 296 (312)
..
T Consensus 204 ~~ 205 (326)
T cd05487 204 CE 205 (326)
T ss_pred cC
Confidence 53
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.1e-34 Score=274.62 Aligned_cols=181 Identities=22% Similarity=0.380 Sum_probs=150.7
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCC--CCCCCCCCccCcccCCCCCCccceecCCCccccCCCCC
Q 021429 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (312)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~--C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~ 147 (312)
++.+.+|+++|+||||+|++.|+|||||+++||+|..|.. |.. ++.|||++|+||+.
T Consensus 134 n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~-------~~~yd~s~SsT~~~-------------- 192 (453)
T PTZ00147 134 DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCET-------KNLYDSSKSKTYEK-------------- 192 (453)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccC-------CCccCCccCcceEE--------------
Confidence 6788999999999999999999999999999999999974 543 47999999999987
Q ss_pred CCCCCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCC-CCccccceeeecCCC
Q 021429 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDS-TNEEALDGIIGFGKS 226 (312)
Q Consensus 148 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~~~~GIlGLg~~ 226 (312)
..+.|.+.|++|++ .|.+++|+|+|++.. ++ ..|+++.+..+ +.. .....+|||||||++
T Consensus 193 --------~~~~f~i~Yg~Gsv-sG~~~~DtVtiG~~~--------v~-~qF~~~~~~~~-f~~~~~~~~~DGILGLG~~ 253 (453)
T PTZ00147 193 --------DGTKVEMNYVSGTV-SGFFSKDLVTIGNLS--------VP-YKFIEVTDTNG-FEPFYTESDFDGIFGLGWK 253 (453)
T ss_pred --------CCCEEEEEeCCCCE-EEEEEEEEEEECCEE--------EE-EEEEEEEeccC-cccccccccccceecccCC
Confidence 46789999999975 999999999998753 44 57888876644 110 012468999999997
Q ss_pred CC------cHHHHHHhcCCC-CCeeEEeecCC-CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEE
Q 021429 227 NS------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (312)
Q Consensus 227 ~~------s~~~~l~~~g~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~ 292 (312)
.. +++.+|++||+| +++||+||++. ...|+|+|||+|+ +++.|+|+. ...+|.|.++ +.+++..
T Consensus 254 ~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~-~~vg~~~ 329 (453)
T PTZ00147 254 DLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD-VHFGNVS 329 (453)
T ss_pred ccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE-EEECCEe
Confidence 64 478899999999 88999999864 4579999999994 689999995 5679999998 5787654
No 15
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.3e-33 Score=254.56 Aligned_cols=168 Identities=37% Similarity=0.742 Sum_probs=138.5
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCeeeEeCC-CCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCC
Q 021429 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI-QCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDC 152 (312)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C 152 (312)
++|+++|.||||+|++.|+|||||+++||+|. +|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 57999999999999999999999999999983 55443
Q ss_pred CCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCCCcHHH
Q 021429 153 TANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMIS 232 (312)
Q Consensus 153 ~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ 232 (312)
.|.|.+.|++++.+.|.+++|+|+|+...+. ..++++.|||+....+.+.. ...+.+||||||+.+.++++
T Consensus 39 ----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLN-PPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCCCceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccC-CCccCCEEEECCCCCCCHHH
Confidence 2478899998877899999999999764322 13678999999876543321 12468999999999999999
Q ss_pred HHHhcCCCCCeeEEeecCCCCcceEEeCCCC--CCCceeecCCCC--CCcEEEEEEEEEECCEEe
Q 021429 233 QLASSGGVRKMFAHCLDGINGGGIFAIGHVV--QPEVNKTPLVPN--QPHYSINMTAVQVGLDFL 293 (312)
Q Consensus 233 ~l~~~g~i~~~Fs~~l~~~~~~G~l~fGg~d--~~~~~~~pl~~~--~~~~~v~l~~i~vg~~~~ 293 (312)
||+++++|+++||+||++ ..+|.|+||+.. .+++.|+|+..+ ..+|.|+|++|+||++.+
T Consensus 110 ql~~~~~i~~~Fs~~l~~-~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~ 173 (273)
T cd05475 110 QLASQGIIKNVIGHCLSS-NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT 173 (273)
T ss_pred HHHhcCCcCceEEEEccC-CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC
Confidence 999999898899999987 457899999653 367999999765 479999999999999854
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1e-33 Score=269.45 Aligned_cols=191 Identities=20% Similarity=0.381 Sum_probs=154.9
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCC
Q 021429 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (312)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~ 147 (312)
++.+.+|+++|.||||+|++.|+|||||+++||+|..|. .|.. ++.|||++|+|++.
T Consensus 133 d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~-------~~~yd~s~SsT~~~-------------- 191 (450)
T PTZ00013 133 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSI-------KNLYDSSKSKSYEK-------------- 191 (450)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccccc-------CCCccCccCccccc--------------
Confidence 667889999999999999999999999999999999997 4654 37899999999986
Q ss_pred CCCCCCCCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccC---CCCCCCccccceeeecC
Q 021429 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG---NLDSTNEEALDGIIGFG 224 (312)
Q Consensus 148 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~---~~~~~~~~~~~GIlGLg 224 (312)
..|.|.+.|++|+ +.|.+++|+|+|++.. ++ ..|+++.+..+ .+. ...+|||||||
T Consensus 192 --------~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~--------~~-~~f~~~~~~~~~~~~~~---~~~~dGIlGLg 250 (450)
T PTZ00013 192 --------DGTKVDITYGSGT-VKGFFSKDLVTLGHLS--------MP-YKFIEVTDTDDLEPIYS---SSEFDGILGLG 250 (450)
T ss_pred --------CCcEEEEEECCce-EEEEEEEEEEEECCEE--------Ec-cEEEEEEecccccccee---cccccceeccc
Confidence 4678999999998 5999999999998753 33 57888776532 122 14679999999
Q ss_pred CCCC------cHHHHHHhcCCC-CCeeEEeecCC-CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEE
Q 021429 225 KSNS------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (312)
Q Consensus 225 ~~~~------s~~~~l~~~g~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~ 292 (312)
++.. +++.+|++||+| +++||+||++. ...|+|+|||+|+ +++.|+|+. ...+|.|.++ +.+|...
T Consensus 251 ~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v~~G~~~ 328 (450)
T PTZ00013 251 WKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQT 328 (450)
T ss_pred CCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-EEECcee
Confidence 9754 588999999999 78999999864 4579999999994 689999995 5679999998 7777654
Q ss_pred eccCCcccccCC
Q 021429 293 LNLPTDVFGVGD 304 (312)
Q Consensus 293 ~~~~~~~~~~~~ 304 (312)
..-..+++|+|+
T Consensus 329 ~~~~~aIlDSGT 340 (450)
T PTZ00013 329 MQKANVIVDSGT 340 (450)
T ss_pred ccccceEECCCC
Confidence 432344555443
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.9e-33 Score=263.48 Aligned_cols=195 Identities=23% Similarity=0.274 Sum_probs=151.5
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCC
Q 021429 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (312)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~ 153 (312)
..|+++|.||||+|++.|+|||||+++||+|..|..| ++.|||++|+||+.
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~---------~~~f~~~~SsT~~~-------------------- 52 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI---------HTYFHRELSSTYRD-------------------- 52 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc---------cccCCchhCcCccc--------------------
Confidence 4799999999999999999999999999999887432 36899999999997
Q ss_pred CCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCCC-----
Q 021429 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----- 228 (312)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~----- 228 (312)
..|.|.+.|++|+. .|.+++|+|+|++.. . ....+.|++..+..+.+.. ....|||||||++.+
T Consensus 53 --~~~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~-~-----~~~~~~~~~~~~~~~~~~~--~~~~dGIlGLg~~~l~~~~~ 121 (364)
T cd05473 53 --LGKGVTVPYTQGSW-EGELGTDLVSIPKGP-N-----VTFRANIAAITESENFFLN--GSNWEGILGLAYAELARPDS 121 (364)
T ss_pred --CCceEEEEECcceE-EEEEEEEEEEECCCC-c-----cceEEeeEEEeccccceec--ccccceeeeecccccccCCC
Confidence 46789999999986 899999999997531 0 0112345565554443221 135799999998743
Q ss_pred ---cHHHHHHhcCCCCCeeEEeecCC----------CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCE
Q 021429 229 ---SMISQLASSGGVRKMFAHCLDGI----------NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLD 291 (312)
Q Consensus 229 ---s~~~~l~~~g~i~~~Fs~~l~~~----------~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~ 291 (312)
+++++|++|+.++++||+||... ...|+|+||++|+ +++.|+|+. ...+|.|.|++|+|+++
T Consensus 122 ~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~ 200 (364)
T cd05473 122 SVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQ 200 (364)
T ss_pred CCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCE
Confidence 58899999998878999988421 2369999999984 679999996 45789999999999999
Q ss_pred EeccCCcccccCCCCCeEEcC
Q 021429 292 FLNLPTDVFGVGDNKDNISAA 312 (312)
Q Consensus 292 ~~~~~~~~~~~~~~~~~iiDS 312 (312)
.+.++...+. ...+||||
T Consensus 201 ~~~~~~~~~~---~~~~ivDS 218 (364)
T cd05473 201 SLNLDCKEYN---YDKAIVDS 218 (364)
T ss_pred eccccccccc---CccEEEeC
Confidence 9887644332 23467765
No 18
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1e-33 Score=258.49 Aligned_cols=171 Identities=34% Similarity=0.633 Sum_probs=143.6
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCCC
Q 021429 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (312)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~~ 154 (312)
+|+++|.||||||++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999987554
Q ss_pred CCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCCCcHHHHH
Q 021429 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (312)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l 234 (312)
|.|.+.|++|+.+.|.+++|+|+|++.. .++++.|||+...++.+ ...+||||||+...+++.||
T Consensus 34 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~-----~~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ---CLYQVSYGDGSYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLF-----GGAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ---CeeeeEeCCCceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCcc-----CCCCEEEECCCCcchHHHHh
Confidence 2568999999977999999999998741 36789999998876643 25799999999999999999
Q ss_pred HhcCCCCCeeEEeecCC--CCcceEEeCCCCC--CCceeecCCCCC---CcEEEEEEEEEECCEEeccCCcccccCCCCC
Q 021429 235 ASSGGVRKMFAHCLDGI--NGGGIFAIGHVVQ--PEVNKTPLVPNQ---PHYSINMTAVQVGLDFLNLPTDVFGVGDNKD 307 (312)
Q Consensus 235 ~~~g~i~~~Fs~~l~~~--~~~G~l~fGg~d~--~~~~~~pl~~~~---~~~~v~l~~i~vg~~~~~~~~~~~~~~~~~~ 307 (312)
..+ .+++||+||++. ..+|+|+||++|+ +++.|+|++.++ .+|.|+|++|+||++.+.+++... .+++
T Consensus 99 ~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~---~~~~ 173 (299)
T cd05472 99 ASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASF---GAGG 173 (299)
T ss_pred hHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCcccc---CCCC
Confidence 865 468999999864 4579999999997 789999997653 589999999999999988754322 2466
Q ss_pred eEEcC
Q 021429 308 NISAA 312 (312)
Q Consensus 308 ~iiDS 312 (312)
+||||
T Consensus 174 ~ivDS 178 (299)
T cd05472 174 VIIDS 178 (299)
T ss_pred eEEeC
Confidence 78876
No 19
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.5e-33 Score=263.31 Aligned_cols=207 Identities=25% Similarity=0.345 Sum_probs=164.0
Q ss_pred eCCCCce-EEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCC---------CC
Q 021429 82 IGTPPKD-YYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL---------TD 151 (312)
Q Consensus 82 iGtP~q~-~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~---------~~ 151 (312)
+|||-.+ +.|+|||||+++||+|.+ .+|+||+.++|+++.|+...++.. ..
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5788777 899999999999999854 457899999999999987765422 24
Q ss_pred CCCCCCCccEEE-eCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccC-CCCCCCccccceeeecCCCCCc
Q 021429 152 CTANTSCPYLEI-YGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGKSNSS 229 (312)
Q Consensus 152 C~~~~~~~~~~~-Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GIlGLg~~~~s 229 (312)
|. ++.|.|... |++|+...|.+++|+|+|+...+.......++++.|||+.+... .+. ..+|||||||++++|
T Consensus 63 c~-~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~----~~~dGIlGLg~~~lS 137 (362)
T cd05489 63 CG-NNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLP----PGAQGVAGLGRSPLS 137 (362)
T ss_pred CC-CCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCc----cccccccccCCCccc
Confidence 63 345888665 77898789999999999986433221112478999999987532 122 358999999999999
Q ss_pred HHHHHHhcCCCCCeeEEeecCC-CCcceEEeCCCCC----------CCceeecCCCC---CCcEEEEEEEEEECCEEecc
Q 021429 230 MISQLASSGGVRKMFAHCLDGI-NGGGIFAIGHVVQ----------PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNL 295 (312)
Q Consensus 230 ~~~~l~~~g~i~~~Fs~~l~~~-~~~G~l~fGg~d~----------~~~~~~pl~~~---~~~~~v~l~~i~vg~~~~~~ 295 (312)
++.||..++.++++||+||.+. ..+|+|+||+.+. +.++||||+.+ +.+|+|+|++|+||++++++
T Consensus 138 l~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~ 217 (362)
T cd05489 138 LPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPL 217 (362)
T ss_pred hHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCC
Confidence 9999998766678999999875 4579999999873 67899999865 36999999999999999998
Q ss_pred CCcccc--cCCCCCeEEcC
Q 021429 296 PTDVFG--VGDNKDNISAA 312 (312)
Q Consensus 296 ~~~~~~--~~~~~~~iiDS 312 (312)
++..|. ...++++||||
T Consensus 218 ~~~~~~~~~~~~~g~iiDS 236 (362)
T cd05489 218 NPTLSANDRLGPGGVKLST 236 (362)
T ss_pred CchhccccccCCCcEEEec
Confidence 766653 34468899997
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=5.6e-33 Score=250.62 Aligned_cols=180 Identities=33% Similarity=0.602 Sum_probs=152.5
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCCCC
Q 021429 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (312)
Q Consensus 76 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~~~ 155 (312)
|+++|.||||+|++.|++||||+++||+|..|..|..+... ...|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~---~~~~~~~~s~~~~~---------------------- 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP---RFKYDSSKSSTYKD---------------------- 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC---CCccCccCCceeec----------------------
Confidence 78999999999999999999999999999999987654320 01266666666554
Q ss_pred CCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCC------Cc
Q 021429 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN------SS 229 (312)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~------~s 229 (312)
..|.|.+.|++|+. .|.+++|+++|++.. ++++.|||++...+.+. ....+||||||+.. .+
T Consensus 56 ~~~~~~~~Y~~g~~-~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~~---~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 56 TGCTFSITYGDGSV-TGGLGTDTVTIGGLT--------IPNQTFGCATSESGDFS---SSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred CCCEEEEEECCCeE-EEEEEEeEEEECCEE--------EeceEEEEEeccCCccc---ccccceEeecCCcccccccCCC
Confidence 67899999999875 899999999998753 67899999998765332 25789999999998 78
Q ss_pred HHHHHHhcCCC-CCeeEEeecCC---CCcceEEeCCCCC----CCceeecCCCC-CCcEEEEEEEEEECCEE
Q 021429 230 MISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPN-QPHYSINMTAVQVGLDF 292 (312)
Q Consensus 230 ~~~~l~~~g~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~pl~~~-~~~~~v~l~~i~vg~~~ 292 (312)
+++||.++++| ++.||+||.+. ...|.|+||++|+ +++.|+|++.. ..+|.|.|++|+|+++.
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~ 195 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKS 195 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCce
Confidence 99999999999 89999999984 4789999999985 68999999865 77999999999999975
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.6e-32 Score=246.52 Aligned_cols=172 Identities=35% Similarity=0.670 Sum_probs=145.7
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCCC
Q 021429 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (312)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~~ 154 (312)
+|+++|+||||+|++.|+|||||+++||+| |
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----~-------------------------------------------- 31 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----C-------------------------------------------- 31 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----C--------------------------------------------
Confidence 599999999999999999999999999975 1
Q ss_pred CCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCCCcHHHHH
Q 021429 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (312)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l 234 (312)
.|.+.|++|+.+.|.+++|+|.|++.. ..++++.|||+++..+ +. ...++||||||+...++++||
T Consensus 32 ----~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~~---~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 32 ----SYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-GS---FGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ----ceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-Cc---cCCCCEEEECCCCcccHHHHh
Confidence 457899988888999999999998752 1368899999998865 33 257899999999999999999
Q ss_pred HhcCCCCCeeEEeecCC---CCcceEEeCCCCC---CCceeecCCCC---CCcEEEEEEEEEECCEEeccCCcccc--cC
Q 021429 235 ASSGGVRKMFAHCLDGI---NGGGIFAIGHVVQ---PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLPTDVFG--VG 303 (312)
Q Consensus 235 ~~~g~i~~~Fs~~l~~~---~~~G~l~fGg~d~---~~~~~~pl~~~---~~~~~v~l~~i~vg~~~~~~~~~~~~--~~ 303 (312)
..++ ++||+||.+. ..+|+|+||++|+ +++.|+|++.+ ..+|.|.|++|+|+++.+.+++..+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9887 8999999873 4579999999996 78999999875 57999999999999999987654432 23
Q ss_pred CCCCeEEcC
Q 021429 304 DNKDNISAA 312 (312)
Q Consensus 304 ~~~~~iiDS 312 (312)
....+||||
T Consensus 175 ~~~~ai~DT 183 (265)
T cd05476 175 GSGGTIIDS 183 (265)
T ss_pred CCCcEEEeC
Confidence 356788886
No 22
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=3.3e-32 Score=227.04 Aligned_cols=162 Identities=38% Similarity=0.718 Sum_probs=131.5
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCCCC
Q 021429 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (312)
Q Consensus 76 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~~~ 155 (312)
|+++|+||||+|++.|++||||+++|++|. .+.|+|++|+||+.++|.+++|...++.....|..+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~--------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~ 66 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP--------------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSN 66 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCES
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC--------------CcccCCccCCcccccCCCCcchhhcccccccCCCCc
Confidence 899999999999999999999999999981 279999999999999999999998875423334467
Q ss_pred CCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCCCcHHHHHH
Q 021429 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLA 235 (312)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~ 235 (312)
..|.|.+.|++++...|.+++|+|+++...++. ..+.++.|||+....+.+ ...+||||||+.+.||+.||+
T Consensus 67 ~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~-----~~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 67 NSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLF-----YGADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSS-----TTEEEEEE-SSSTTSHHHHHH
T ss_pred CcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCC-----cCCCcccccCCCcccHHHHHH
Confidence 899999999999999999999999999864332 247889999999988654 368999999999999999998
Q ss_pred hcCCCCCeeEEeecC-C-CCcceEEeCC
Q 021429 236 SSGGVRKMFAHCLDG-I-NGGGIFAIGH 261 (312)
Q Consensus 236 ~~g~i~~~Fs~~l~~-~-~~~G~l~fGg 261 (312)
++ ..++|||||.+ . ...|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 87 67899999998 2 6789999995
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=99.97 E-value=1.5e-30 Score=238.77 Aligned_cols=192 Identities=28% Similarity=0.483 Sum_probs=154.4
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCCC
Q 021429 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (312)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~~ 154 (312)
+|+++|.||||+|++.|++||||+++||++..|..| ..|.....|++.+|+|++..
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~----~~~~~~~~y~~~~S~t~~~~-------------------- 56 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC----SSCASSGFYNPSKSSTFSNQ-------------------- 56 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH----THHCTSC-BBGGGSTTEEEE--------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc----cccccccccccccccccccc--------------------
Confidence 599999999999999999999999999999999876 11122378999999999873
Q ss_pred CCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCC-------C
Q 021429 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS-------N 227 (312)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~-------~ 227 (312)
.+.+.+.|++|+ +.|.+++|+|.|++.. +.++.||++....+... .....+||||||+. .
T Consensus 57 --~~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 57 --GKPFSISYGDGS-VSGNLVSDTVSIGGLT--------IPNQTFGLADSYSGDPF--SPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp --EEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEEESHHH--HHSSSSEEEE-SSGGGSGGGTS
T ss_pred --eeeeeeeccCcc-cccccccceEeeeecc--------ccccceecccccccccc--ccccccccccccCCcccccccC
Confidence 457899999999 6999999999998853 67899999998644211 12568999999974 3
Q ss_pred CcHHHHHHhcCCC-CCeeEEeecCC-CCcceEEeCCCCC----CCceeecCCCCCCcEEEEEEEEEECCEEeccC---Cc
Q 021429 228 SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLP---TD 298 (312)
Q Consensus 228 ~s~~~~l~~~g~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~v~l~~i~vg~~~~~~~---~~ 298 (312)
.+++++|+++|+| +++||++|.+. ...|.|+||++|+ +++.|+|+. ...+|.|.+++|+++++..... ..
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~~~~~~~~ 202 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVFSSSGQQA 202 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-cccccccccccccccccccccccceee
Confidence 4799999999999 89999999885 3569999999984 678999997 6779999999999999933222 35
Q ss_pred ccccCC
Q 021429 299 VFGVGD 304 (312)
Q Consensus 299 ~~~~~~ 304 (312)
++|+|+
T Consensus 203 ~~Dtgt 208 (317)
T PF00026_consen 203 ILDTGT 208 (317)
T ss_dssp EEETTB
T ss_pred eccccc
Confidence 555543
No 24
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=99.97 E-value=3.6e-29 Score=227.86 Aligned_cols=162 Identities=23% Similarity=0.417 Sum_probs=136.5
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCCC
Q 021429 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (312)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~~ 154 (312)
.|+++|.||||+|++.|+|||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 69999999999999999999999999996
Q ss_pred CCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCCCCC------
Q 021429 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------ 228 (312)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~------ 228 (312)
.|.+.|++|+.+.|.+++|+|+|++.. ++++.|||+++. ...+||||||+...
T Consensus 31 ----~~~~~Y~~g~~~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~---------~~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 ----DFSISYGDGTSASGTWGTDTVSIGGAT--------VKNLQFAVANST---------SSDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred ----eeEEEeccCCcEEEEEEEEEEEECCeE--------ecceEEEEEecC---------CCCcceeeECCCCCcccccC
Confidence 135889997777999999999998752 678999999874 23589999999875
Q ss_pred -----cHHHHHHhcCCC-CCeeEEeecCC-CCcceEEeCCCCC----CCceeecCCCCC-----CcEEEEEEEEEECCEE
Q 021429 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQ-----PHYSINMTAVQVGLDF 292 (312)
Q Consensus 229 -----s~~~~l~~~g~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~pl~~~~-----~~~~v~l~~i~vg~~~ 292 (312)
+|+++|++||+| ++.||+||.+. ...|.|+||++|+ ++++|+|+.... .+|.|.+++|+|+++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 699999999999 79999999975 4579999999984 678999998653 6899999999999998
Q ss_pred eccCCcccccCCCCCeEEcC
Q 021429 293 LNLPTDVFGVGDNKDNISAA 312 (312)
Q Consensus 293 ~~~~~~~~~~~~~~~~iiDS 312 (312)
+..+.. ...+.++|||
T Consensus 170 ~~~~~~----~~~~~~iiDS 185 (295)
T cd05474 170 GNTTLL----SKNLPALLDS 185 (295)
T ss_pred Cccccc----CCCccEEECC
Confidence 764211 1246677776
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=2.5e-23 Score=161.69 Aligned_cols=108 Identities=34% Similarity=0.608 Sum_probs=90.5
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCccc-CCCCCCccceecCCCccccCCCCCCCCCCCCCC
Q 021429 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLY-DIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANT 156 (312)
Q Consensus 78 ~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f-~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~~~~ 156 (312)
++|.||||+|++.|+|||||+++||+|..|..|..+. ++.| +|++|++++. .
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~-----~~~~~~~~~sst~~~----------------------~ 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS-----HSSYDDPSASSTYSD----------------------N 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc-----ccccCCcCCCCCCCC----------------------C
Confidence 4799999999999999999999999999998776442 2456 9999999886 5
Q ss_pred CCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeec
Q 021429 157 SCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGF 223 (312)
Q Consensus 157 ~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGL 223 (312)
.|.|.+.|++|+. .|.+++|+|+|++.. ++++.|||++...+.+.. ....+|||||
T Consensus 54 ~~~~~~~Y~~g~~-~g~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~~--~~~~~GilGL 109 (109)
T cd05470 54 GCTFSITYGTGSL-SGGLSTDTVSIGDIE--------VVGQAFGCATDEPGATFL--PALFDGILGL 109 (109)
T ss_pred CcEEEEEeCCCeE-EEEEEEEEEEECCEE--------ECCEEEEEEEecCCcccc--ccccccccCC
Confidence 6799999999975 899999999998753 678999999988775321 2468999998
No 26
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.90 E-value=4.3e-05 Score=56.97 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=61.4
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCCCCC
Q 021429 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (312)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~~C~ 153 (312)
+.|++++.|+ ++++.+++|||++.+|+.......+.. ...
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~-----------------~~~--------------------- 40 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL-----------------PLT--------------------- 40 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC-----------------Ccc---------------------
Confidence 3689999999 899999999999999997643211110 000
Q ss_pred CCCCCccEEEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEeEEeccCCCCCCCccccceeeecCC
Q 021429 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGK 225 (312)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~ 225 (312)
......+...+|.........+.+.+++.. ..++.+....... ...+||||+.+
T Consensus 41 --~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~--------~~~~~~~v~d~~~--------~~~~gIlG~d~ 94 (96)
T cd05483 41 --LGGKVTVQTANGRVRAARVRLDSLQIGGIT--------LRNVPAVVLPGDA--------LGVDGLLGMDF 94 (96)
T ss_pred --CCCcEEEEecCCCccceEEEcceEEECCcE--------EeccEEEEeCCcc--------cCCceEeChHH
Confidence 122445667777765666668889998752 4455555443321 13689999863
No 27
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.85 E-value=0.042 Score=43.19 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=28.4
Q ss_pred CceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCC
Q 021429 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (312)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 105 (312)
.++.|++++.|. ++++.+++|||++.+-++..
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~ 39 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEE 39 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH
Confidence 478999999998 88999999999999988653
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.59 E-value=0.087 Score=38.26 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.9
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 021429 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (312)
Q Consensus 78 ~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~ 106 (312)
+++.|+ .+++.+++|||++.+.+....
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~ 27 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSL 27 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHH
Confidence 357777 789999999999988886543
No 29
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.30 E-value=0.37 Score=37.88 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=29.3
Q ss_pred CceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCC
Q 021429 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQC 107 (312)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c 107 (312)
....+++++.|+ ++++.+++|||++..++....+
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a 46 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACA 46 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHH
Confidence 467899999999 8999999999999999976443
No 30
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.23 E-value=0.11 Score=38.33 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=25.8
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 021429 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (312)
Q Consensus 76 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~ 106 (312)
|++.+.|+ ++++.+++||||+..++....
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 999999999999999997644
No 31
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=90.63 E-value=0.5 Score=33.33 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=30.4
Q ss_pred CceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC
Q 021429 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108 (312)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~ 108 (312)
..+.+++.+.|| ++.+.+++|||++...|+...+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 468999999999 79999999999999998765543
No 32
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=87.12 E-value=0.92 Score=33.80 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.1
Q ss_pred EEEEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 021429 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (312)
Q Consensus 77 ~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~ 106 (312)
+.+|.+. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 6788888 889999999999999997643
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=83.59 E-value=3.6 Score=35.15 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=53.9
Q ss_pred CCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCcccCCCCCCccceecCCCccccCCCCCCCC
Q 021429 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (312)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~v~c~~~~C~~~~~~~~~ 150 (312)
..+|.|.++..|- +|++.+++|||.+.+-++.+.... --+|.+.
T Consensus 101 ~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-----------lGid~~~----------------------- 144 (215)
T COG3577 101 SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-----------LGIDLNS----------------------- 144 (215)
T ss_pred cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-----------hCCCccc-----------------------
Confidence 4689999999998 999999999999998887654211 1233221
Q ss_pred CCCCCCCCccEEEeCCCCceeEEEEEEEEEEeccc
Q 021429 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVS 185 (312)
Q Consensus 151 ~C~~~~~~~~~~~Y~~g~~~~G~~~~D~l~~~~~~ 185 (312)
.+.++.+.-.+|......+..|.|.|++..
T Consensus 145 -----l~y~~~v~TANG~~~AA~V~Ld~v~IG~I~ 174 (215)
T COG3577 145 -----LDYTITVSTANGRARAAPVTLDRVQIGGIR 174 (215)
T ss_pred -----cCCceEEEccCCccccceEEeeeEEEccEE
Confidence 233455666778876677899999998864
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=79.13 E-value=2.6 Score=30.63 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=21.5
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 021429 79 KIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (312)
Q Consensus 79 ~i~iGtP~q~~~v~~DTGS~~~Wv~~~~ 106 (312)
.+.|. ++++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 899999999999999997644
No 35
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=78.91 E-value=5.9 Score=36.93 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=34.5
Q ss_pred EEeCCCCceeEEEEEEEEEEecccCCccccccccceEEEe----------EEeccCCCCCCCccccceeeecCCC
Q 021429 162 EIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGC----------GARQSGNLDSTNEEALDGIIGFGKS 226 (312)
Q Consensus 162 ~~Y~~g~~~~G~~~~D~l~~~~~~~~~~~~~~~~~~~fg~----------~~~~~~~~~~~~~~~~~GIlGLg~~ 226 (312)
..|++|.. .|-+.+-.|.|++.... .++-|.++- ...-.. ........++||||+|.-
T Consensus 82 ~~F~sgyt-WGsVr~AdV~igge~A~-----~iPiQvI~D~~~~~~P~sC~~~g~~-~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 AQFASGYT-WGSVRTADVTIGGETAS-----SIPIQVIGDSAAPSVPSSCSNSGAS-MNTVADLGANGILGIGPF 149 (370)
T ss_pred hhccCccc-ccceEEEEEEEcCeecc-----ccCEEEEcCCCCCCCCchhhcCCCC-CCCcccccCceEEeecCC
Confidence 45677765 79999999999986321 244444442 222110 111123568999999875
No 36
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=77.66 E-value=3.2 Score=30.56 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=21.4
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeEeCC
Q 021429 79 KIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (312)
Q Consensus 79 ~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 105 (312)
.+.|+ +|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46777 89999999999999999753
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.51 E-value=8.2 Score=28.89 Aligned_cols=13 Identities=23% Similarity=0.043 Sum_probs=6.8
Q ss_pred CCCcchhHHHHHH
Q 021429 1 MGLCLRNCLCIVL 13 (312)
Q Consensus 1 m~m~~~~~l~~~~ 13 (312)
|+-|..++|.++|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 6656655544433
No 38
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=55.11 E-value=22 Score=28.02 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=24.9
Q ss_pred ceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCC
Q 021429 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKEC 110 (312)
Q Consensus 73 ~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~c~~C 110 (312)
....|++++|. ++++++.+|||...+-+...-+..|
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 56789999999 9999999999999988865433344
No 39
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=54.38 E-value=18 Score=29.89 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=21.5
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeEeCC
Q 021429 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (312)
Q Consensus 78 ~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 105 (312)
..+.++.-..++.++|||||..-++...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3444445588999999999999888763
No 40
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=41.09 E-value=38 Score=25.69 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=20.1
Q ss_pred EEEEeCCCCc----eEEEEEEcCCCeee-EeC
Q 021429 78 AKIGIGTPPK----DYYVQVDTGSDIMW-VNC 104 (312)
Q Consensus 78 ~~i~iGtP~q----~~~v~~DTGS~~~W-v~~ 104 (312)
+++.|..|.| ++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 5778888733 67999999998664 543
No 41
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=39.81 E-value=25 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=18.3
Q ss_pred EEeCCCC-ceEEEEEEcCCCeeeEeC
Q 021429 80 IGIGTPP-KDYYVQVDTGSDIMWVNC 104 (312)
Q Consensus 80 i~iGtP~-q~~~v~~DTGS~~~Wv~~ 104 (312)
+.|. . +++++.+|||++..-++-
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEeccH
Confidence 4444 5 899999999999887764
No 42
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=31.09 E-value=72 Score=28.32 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=22.9
Q ss_pred eeEEEE---EEeCC---CCceEEEEEEcCCCeeeEeCC
Q 021429 74 GLYYAK---IGIGT---PPKDYYVQVDTGSDIMWVNCI 105 (312)
Q Consensus 74 ~~Y~~~---i~iGt---P~q~~~v~~DTGS~~~Wv~~~ 105 (312)
..|.++ |+||. +.....+++|||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 466655 57773 223457999999999999864
No 43
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=30.69 E-value=72 Score=19.27 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=7.5
Q ss_pred HHHHHHHHhhcccCcceeE
Q 021429 11 IVLIATAAVGGVSSNHGVF 29 (312)
Q Consensus 11 ~~~~~~a~~~~~~~~~~~~ 29 (312)
+++++++++..+.+++..+
T Consensus 10 l~lLal~~a~~~~pG~ViI 28 (36)
T PF08194_consen 10 LLLLALAAAVPATPGNVII 28 (36)
T ss_pred HHHHHHHhcccCCCCeEEE
Confidence 3343444433333444333
No 44
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=22.59 E-value=97 Score=28.18 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=22.0
Q ss_pred eeEEEE---EEeCCC-----CceEEEEEEcCCCeeeEeCC
Q 021429 74 GLYYAK---IGIGTP-----PKDYYVQVDTGSDIMWVNCI 105 (312)
Q Consensus 74 ~~Y~~~---i~iGtP-----~q~~~v~~DTGS~~~Wv~~~ 105 (312)
..|.++ |.||.. .+...+++|||++.+++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 455554 577632 23457999999999999853
No 45
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=22.24 E-value=1.3e+02 Score=23.84 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=25.2
Q ss_pred ceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCC
Q 021429 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (312)
Q Consensus 73 ~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 105 (312)
...-.+.+.|. .++..+++|+|++.-+|...
T Consensus 19 ~~vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 19 PDVITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred CCeEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 45567788888 68889999999999888653
No 46
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=21.90 E-value=87 Score=23.12 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.5
Q ss_pred ceEEEEEEcCCCeeeEeCCC
Q 021429 87 KDYYVQVDTGSDIMWVNCIQ 106 (312)
Q Consensus 87 q~~~v~~DTGS~~~Wv~~~~ 106 (312)
....+++|||+...-+|...
T Consensus 8 s~~~fLVDTGA~vSviP~~~ 27 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASS 27 (89)
T ss_pred CCcEEEEeCCCceEeecccc
Confidence 35689999999999998654
No 47
>PLN03146 aspartyl protease family protein; Provisional
Probab=20.99 E-value=94 Score=29.91 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=14.0
Q ss_pred EEEEEcCCCeeeEeCC
Q 021429 90 YVQVDTGSDIMWVNCI 105 (312)
Q Consensus 90 ~v~~DTGS~~~Wv~~~ 105 (312)
.++||||+..++++..
T Consensus 309 ~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 309 NIIIDSGTTLTLLPSD 324 (431)
T ss_pred cEEEeCCccceecCHH
Confidence 5899999999999863
No 48
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.85 E-value=95 Score=20.52 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=15.1
Q ss_pred EEeCCCCceEEEEEEcCCCeeeE
Q 021429 80 IGIGTPPKDYYVQVDTGSDIMWV 102 (312)
Q Consensus 80 i~iGtP~q~~~v~~DTGS~~~Wv 102 (312)
+.++ +..+.+++|||+...-+
T Consensus 3 ~~~~--~~~~~~liDtgs~~~~~ 23 (92)
T cd00303 3 GKIN--GVPVRALVDSGASVNFI 23 (92)
T ss_pred EEEC--CEEEEEEEcCCCccccc
Confidence 4455 47889999999875433
No 49
>PRK11372 lysozyme inhibitor; Provisional
Probab=20.20 E-value=66 Score=24.67 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=8.5
Q ss_pred CCCcchhHHHHHHH
Q 021429 1 MGLCLRNCLCIVLI 14 (312)
Q Consensus 1 m~m~~~~~l~~~~~ 14 (312)
|+||..+.++++++
T Consensus 1 ~~mk~ll~~~~~~l 14 (109)
T PRK11372 1 MSMKKLLIICLPVL 14 (109)
T ss_pred CchHHHHHHHHHHH
Confidence 88888665544333
Done!