BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021430
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 230 bits (587), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 176/302 (58%), Gaps = 12/302 (3%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L + +Y +CP AE ++ L+RMHFHDCF+RGCDASVLL+S +N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 83 KAEKDGPPN-VSLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
AEKD PN SL F VI AK VE CP VSCADILA AARD+ L+G T+ VP
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 142 GRKDGRTSKASET-VQLPAPTFNISQLQQSFSQRGLSMEDLAALSGGHTLGFAHCSSFQS 200
GR+DG S ASE Q+P+P FN +QL SF+ + L+ +++ LSG H++G AHCSSF +
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 201 RINTNNA----DPTINPSFAESLRNICPIHN-QAKNAGANMD-ASSATFDNTYYKLILQG 254
R+ N+ DPT++PS+A LRN CP ++ + ++D + + DN YY +
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLT 241
Query: 255 KSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKDCRV 310
L SDQAL++ V A + ++ F ++M+KM I G Q E+R +C V
Sbjct: 242 LGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSV 301
Query: 311 VN 312
VN
Sbjct: 302 VN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 176/300 (58%), Gaps = 11/300 (3%)
Query: 22 ALSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGS 81
LS ++Y +TCP AE I+ LLR+HFHDCF++GCDASVLL+ +
Sbjct: 8 GLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSAT 67
Query: 82 NKAEKDGPPNVSLH--AFYVIDNAKKQVETLCPG-VVSCADILALAARDAVVLSGGPTWD 138
E+ PPN++L AF +++ + ++E C G VVSC+DILALAARD+VV+SGGP +
Sbjct: 68 GPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYR 127
Query: 139 VPKGRKDGRTSKASETV--QLPAPTFNISQLQQSFSQRGLSMEDLAALSGGHTLGFAHCS 196
VP GR+D R+ +++ V LP P+ N+ L + GL DL +SGGHT+G AHCS
Sbjct: 128 VPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCS 187
Query: 197 SFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSATFDNTYYKLILQGKS 256
SF+ R+ DPTI+P+F L+ CP + ++ + FDN YY ++ +
Sbjct: 188 SFEDRLFP-RPDPTISPTFLSRLKRTCPAKGTDRRTVLDV-RTPNVFDNKYYIDLVNREG 245
Query: 257 LFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIKMSSI----NGGQEVRKDCRVVN 312
LF SDQ L ++ T+ +V +FA S Q F E F S+ KM + + EVR++C V N
Sbjct: 246 LFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSVRN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/297 (42%), Positives = 172/297 (57%), Gaps = 11/297 (3%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
LS N+Y CP+A I LLR+HFHDCF++GCDASVLL+ +
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
EK PN S+ F VID K QVE+LCPGVVSCADILA+AARD+VV GG +W+V
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 142 GRKDGRT-SKASETVQLPAPTFNISQLQQSFSQRGLSMEDLAALSGGHTLGFAHCSSFQS 200
GR+D T S +S LPAP FN+S L +FS +G + ++L LSG HT+G A C++F++
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 201 RI-NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSATFDNTYYKLILQGKSLFA 259
RI N +N DPT +A+SL+ CP N + FDN YY + K L
Sbjct: 182 RIYNESNIDPT----YAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLH 237
Query: 260 SDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIKMSSIN----GGQEVRKDCRVVN 312
SDQ L + T + V+ ++++ +FN F +MIKM +++ ++R +CR N
Sbjct: 238 SDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 169/302 (55%), Gaps = 16/302 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
LS + Y K+CP+ I+ L+R+HFHDCF+ GCDAS+LL+ S
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS- 60
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
EK PN+ S F VID K VE CPGVVSCADIL LAARD+VVLSGGP W V
Sbjct: 61 --EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 142 GRKDGRTSKASETVQLPAPTFNISQLQQSFSQRGLSMEDLAALSGGHTLGFAHCSSFQSR 201
GRKDG + + LP+P + + F L++ D+ ALSG HT G A C+ F +R
Sbjct: 119 GRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNR 178
Query: 202 I----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSA-TFDNTYYKLILQGKS 256
+ N D T+ S +L+ +CP+ + N A +D S+ TFDN Y+K +L+GK
Sbjct: 179 LFNFTGAGNPDATLETSLLSNLQTVCPLGGNS-NITAPLDRSTTDTFDNNYFKNLLEGKG 237
Query: 257 LFASDQALLSHP----ETKNLVSKFASSHQSFNEAFVKSMIKMSSINGGQ--EVRKDCRV 310
L +SDQ L S TK LV ++ S F F +MI+M +I+ G EVR +CRV
Sbjct: 238 LLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNISNGASGEVRTNCRV 297
Query: 311 VN 312
+N
Sbjct: 298 IN 299
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/303 (43%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y +TCP+ I+ L+R+HFHDCF++GCD SVLLN+ +
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
++E+D PN+ S+ V+++ K VE CP VSCADILA+AA A VL GGP W VP
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 142 GRKDGRTSKASETVQ-LPAPTFNISQLQQSFSQRGLSMEDLAALSGGHTLGFAHCSSFQS 200
GR+D T+ + Q LPAP FN++QL+ SF+ +GL+ DL LSGGHT G A CS+F +
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 201 RI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSA-TFDNTYYKLILQGK 255
R+ NT N DPT+N ++ E LR CP N + N+D S+ FDN YY +LQ
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCP-QNATGDNLTNLDLSTPDQFDNRYYSNLLQLN 240
Query: 256 SLFASDQALLSHP--ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKDCR 309
L SDQ L S P +T +V+ F+S+ +F F SMIKM +I G + E+R C
Sbjct: 241 GLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCN 300
Query: 310 VVN 312
VN
Sbjct: 301 FVN 303
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 173/305 (56%), Gaps = 18/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y TCP+A I+ L+R+HFHDCF+ GCDAS+LL+ GS
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
++EK+ PNV S F V+DN K +E CPGVVSC+D+LALA+ +V L+GGP+W V
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 142 GRKDGRTSK-ASETVQLPAPTFNISQLQQSFSQRGLSMEDLAALSGGHTLGFAHCSSFQS 200
GR+D T+ A +P+P ++S + FS GL+ DL ALSG HT G A C F +
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 201 RI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSA-TFDNTYYKLILQGK 255
R+ T N DPT+N + +L+ +CP N + + N+D S+ FDN Y+ +
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLCP-QNGSASTITNLDLSTPDAFDNNYFANLQSND 241
Query: 256 SLFASDQALLSHP--ETKNLVSKFASSHQSFNEAFVKSMIKMSSI------NGGQEVRKD 307
L SDQ L S T +V+ FAS+ F +AF +SMI M +I NG E+R D
Sbjct: 242 GLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNG--EIRLD 299
Query: 308 CRVVN 312
C+ VN
Sbjct: 300 CKKVN 304
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 175/305 (57%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HFHDCF+ GCDAS+LL++ S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LPAP F + QL+ SF GL+ DL ALSGGHT G C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A +MD + T FDN YY + +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDMDLRTPTIFDNKYYVNLEEQ 241
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRVVN 312
CRVVN
Sbjct: 302 CRVVN 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 175/305 (57%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HFHDCF+ GCDAS+LL++ S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LPAP F + QL+ SF GL+ DL ALSGGHT G C S
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRVVN 312
CRVVN
Sbjct: 302 CRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 174/305 (57%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HFHDCF+ GCDAS+LL++ S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LPAP F + QL+ SF GL+ DL ALSGGHT G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRVVN 312
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 174/305 (57%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HFHDCF+ GCDAS+LL++ S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LPAP F + QL+ SF GL+ DL ALSGGHT G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRVVN 312
CRVVN
Sbjct: 301 CRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 174/305 (57%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HFHDCF+ GCDAS+LL++ S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LPAP F + QL+ SF GL+ DL ALSGGHT G C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRVVN 312
CRVVN
Sbjct: 302 CRVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 174/305 (57%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HFHDCF+ GCDAS+LL++ S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LPAP F + QL+ SF GL+ DL ALSGGHT G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRVVN 312
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 173/305 (56%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HFHDCF+ GCDAS+LL++ S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LP P F + QL+ SF GL+ DL ALSGGHT G C
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRVVN 312
CRVVN
Sbjct: 302 CRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 174/305 (57%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HFHDCF+ GCDAS+LL++ S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LPAP F + QL+ SF GL+ DL ALSGGH+ G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRVVN 312
CRVVN
Sbjct: 301 CRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 173/305 (56%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HFHDCF+ GCDAS+LL++ S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LPAP F + QL+ SF GL+ DL AL GGHT G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRVVN 312
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 214 bits (544), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 173/305 (56%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HFHDCF+ GCDAS+LL++ S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LP P F + QL+ SF GL+ DL ALSGGHT G C
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRVVN 312
CRVVN
Sbjct: 302 CRVVN 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 173/305 (56%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +LR+HF DCF+ GCDAS+LL++ S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LPAP F + QL+ SF GL+ DL ALSGGHT G C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRVVN 312
CRVVN
Sbjct: 302 CRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 210 bits (534), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 172/305 (56%), Gaps = 16/305 (5%)
Query: 23 LSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSKGSN 82
L+ +Y+ +CP+ I+ +L +HF DCF+ GCDAS+LL++ S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 83 KAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWDVPK 141
+ EKD N S F VID K VE+ CP VSCAD+L +AA+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRTSKAS-ETVQLPAPTFNISQLQQSFSQRGLSM-EDLAALSGGHTLGFAHCSSFQ 199
GR+D + LPAP F + QL+ SF GL+ DL ALSGGHT G C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 200 SRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSAT-FDNTYYKLILQG 254
R+ NT DPT+N ++ ++LR +CP+ N +A + D + T FDN YY + +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 255 KSLFASDQALLSHP---ETKNLVSKFASSHQSFNEAFVKSMIKMSSI---NGGQ-EVRKD 307
K L SDQ L S P +T LV FA+S Q+F AFV++M +M +I G Q ++R +
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRVVN 312
CRVVN
Sbjct: 301 CRVVN 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 206 bits (525), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 14/306 (4%)
Query: 20 GNALSLNYYEKTCPDAEWIIXXXXXXXXXXXXXXXXXLLRMHFHDCFIRGCDASVLLNSK 79
G +L+ +Y TCP+A ++ L+R+HFHDCF+ GCDAS+LL++
Sbjct: 1 GGSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNS 60
Query: 80 GSNKAEKDGPPNV-SLHAFYVIDNAKKQVETLCPGVVSCADILALAARDAVVLSGGPTWD 138
GS +EK+ PN S F V+DN K +E CPGVVSC D+LALA++ +V LSGGP+W
Sbjct: 61 GSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWT 120
Query: 139 VPKGRKDGRTS-KASETVQLPAPTFNISQLQQSFSQRGLSMEDLAALSGGHTLGFAHCSS 197
V GR+D T+ +A +P+PT +S + FS GL+ DL ALSG HT G A C
Sbjct: 121 VDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGV 180
Query: 198 FQSRI----NTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSA-TFDNTYYKLIL 252
F +R+ N DPT+N + +L+ +CP + + N+D S+ FDN Y+ +
Sbjct: 181 FSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGS-TNLDLSTPDAFDNNYFTNLQ 239
Query: 253 QGKSLFASDQALLSHP--ETKNLVSKFASSHQSFNEAFVKSMIKMSSIN----GGQEVRK 306
L SDQ L S T +V+ FAS+ F +AF +SMI M +I+ E+R
Sbjct: 240 SNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRL 299
Query: 307 DCRVVN 312
DC+ N
Sbjct: 300 DCKKTN 305
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMEDLAALSGGHTLGFAH--CSSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHKEASGFEGPWTSN---PLI------------------- 196
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 196
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 147 AMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 184
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 185 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 233 DYAEAHQKLSELG 245
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 196
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 147 AMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 184
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 185 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 233 DYAEAHQKLSELG 245
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 196
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 147 AMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 184
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 185 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 233 DYAEAHQKLSELG 245
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 147 AMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 184
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 185 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 233 DYAEAHQKLSELG 245
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 196
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 196
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
++S AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GL+ +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 196
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALLS P + LV K+A+ +F
Sbjct: 197 ------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 287 AFVKSMIKMSSIN 299
+ ++ K+S +
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 43/193 (22%)
Query: 114 VVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQ 173
+VS AD LA AV ++GGP GR+D + +LP T L+ F +
Sbjct: 89 IVSYADFYQLAGVVAVEITGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 174 -RGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAK 230
GLS +D+ ALSGGHT+G AH S F+ +N P I
Sbjct: 147 AMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSN---PLI------------------- 184
Query: 231 NAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFNE 286
FDN+Y+ +L G+ SD+ALL+ + LV K+A+ F
Sbjct: 185 ------------FDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFA 232
Query: 287 AFVKSMIKMSSIN 299
+ ++ +K+S +
Sbjct: 233 DYAEAHLKLSELG 245
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 27/194 (13%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKD-GRTSKASETVQLP--APTFNISQLQQSF 171
V+ AD+ LA+ A+ +GGP + GR D + E +LP P L+ F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 172 SQRGLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQA 229
+ GL+ +++ ALSG HTLG + S + D P
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAP---------------- 190
Query: 230 KNAGANMDASSATFDNTYYKLILQGKS----LFASDQALLSHPETKNLVSKFASSHQSFN 285
G + A FDN+Y+K I + + + +D AL P K K+A+ ++F
Sbjct: 191 --GGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFF 248
Query: 286 EAFVKSMIKMSSIN 299
+ + ++ K+S++
Sbjct: 249 KDYAEAHAKLSNLG 262
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 24/226 (10%)
Query: 85 EKDGPPNVSLHAF-----YV----IDNAKKQVETLCPGV--VSCADILALAARDAVVLSG 133
+KDG PN + F Y +D +K +ETL +S AD+ LAA A+ G
Sbjct: 45 KKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMG 104
Query: 134 GPTWDVPKGRKDGRT-SKASETVQLPAPTFNISQLQQSFSQRGLSMEDLAALSGGHTLGF 192
GPT GR D + S +LP + S +++ F + G + ++ AL G HT G
Sbjct: 105 GPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGE 164
Query: 193 AHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSATFDNTYYKLIL 252
H + + SF L + + N MD ++ KL+
Sbjct: 165 THIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLNPKVEQMQLMDRATT-------KLM- 216
Query: 253 QGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIKMSSI 298
+ SD LL P + V +A + FN+ F + K++ +
Sbjct: 217 ----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 24/226 (10%)
Query: 85 EKDGPPNVSLHAF-----YV----IDNAKKQVETLCPGV--VSCADILALAARDAVVLSG 133
+KDG PN + F Y +D +K +ETL +S AD+ LAA A+ G
Sbjct: 44 KKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMG 103
Query: 134 GPTWDVPKGRKDGRT-SKASETVQLPAPTFNISQLQQSFSQRGLSMEDLAALSGGHTLGF 192
GPT GR D + S +LP + S +++ F + G + ++ AL G HT G
Sbjct: 104 GPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGE 163
Query: 193 AHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSATFDNTYYKLIL 252
H + + SF L + + N MD ++ KL+
Sbjct: 164 CHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLNPKVEQMQLMDRATT-------KLM- 215
Query: 253 QGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIKMSSI 298
+ SD LL P + V +A + FN+ F + K++ +
Sbjct: 216 ----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 24/226 (10%)
Query: 85 EKDGPPNVSLHAF-----YV----IDNAKKQVETLCPGV--VSCADILALAARDAVVLSG 133
+KDG PN + F Y +D +K +ETL +S AD+ LAA A+ G
Sbjct: 45 KKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMG 104
Query: 134 GPTWDVPKGRKDGRT-SKASETVQLPAPTFNISQLQQSFSQRGLSMEDLAALSGGHTLGF 192
GPT GR D + S +LP + S +++ F + G + ++ AL G HT G
Sbjct: 105 GPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGE 164
Query: 193 AHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGANMDASSATFDNTYYKLIL 252
H + + SF L + + N MD ++ KL+
Sbjct: 165 CHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLNPKVEQMQLMDRATT-------KLM- 216
Query: 253 QGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIKMSSI 298
+ SD LL P + V +A + FN+ F + K++ +
Sbjct: 217 ----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNA 232
++ ++ AL G HTLG H S ++ NN + SF +L N KN
Sbjct: 162 NMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNN--VFDNSFYLNLLN--EDWKLEKN- 216
Query: 233 GANMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSM 292
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+
Sbjct: 217 ----DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 266
Query: 293 IKM 295
K+
Sbjct: 267 EKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNA 232
++ ++ ALSG HTLG H S ++ NN + SF +L N KN
Sbjct: 162 NMNDREVVALSGAHTLGKTHLKNSGYEGPWTANNN--VFDNSFYLNLLN--EDWKLEKN- 216
Query: 233 GANMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSM 292
DA++ +D+ G +D +L+ P+ ++V ++A+ F + F K+
Sbjct: 217 ----DANNEQWDSK------SGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 266
Query: 293 IKM 295
K+
Sbjct: 267 EKL 269
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 15/182 (8%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADP-TINPSFAESLRNICPIHNQAKNAG 233
++ ++ AL G HTLG H N+ P T NP+ ++ + ++ K
Sbjct: 162 NMNDREVVALMGAHTLGKTHLK------NSGYEGPWTANPNVFDNSFYLNLLNEDWK--L 213
Query: 234 ANMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMI 293
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+
Sbjct: 214 EKNDANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 294 KM 295
K+
Sbjct: 268 KL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 19/184 (10%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHC--SSFQSRIN-TNNADPTINPSFAESLRNICPIHNQAKN 231
++ ++ AL G HTLG H S ++ + TNN + SF +L N KN
Sbjct: 162 NMNDREVVALMGAHTLGKTHLKNSGYEGPWDATNNV---FDNSFYLNLLN--EDWKLEKN 216
Query: 232 AGANMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKS 291
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+
Sbjct: 217 -----DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKA 265
Query: 292 MIKM 295
K+
Sbjct: 266 FEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 17/183 (9%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNA 232
++ ++ AL G HTLG H S ++ NN + SF +L N KN
Sbjct: 162 NMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNN--VFDNSFYLNLLN--EDWKLEKN- 216
Query: 233 GANMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSM 292
DA++ +D+ G +D +L+ P+ ++V ++A+ F + F K+
Sbjct: 217 ----DANNEQWDSK------SGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 266
Query: 293 IKM 295
K+
Sbjct: 267 EKL 269
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 15/181 (8%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + S A+ F +L N KN
Sbjct: 160 NMNDREVVALMGAHALGKTHLKN--SGYEGGGANNVFTNEFYLNLLN--EDWKLEKN--- 212
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 213 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 264
Query: 295 M 295
+
Sbjct: 265 L 265
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 15/181 (8%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + S A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAHALGKTHLKN--SGYEGGGANNVFTNEFYLNLLN--EDWKLEKN--- 211
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 212 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 263
Query: 295 M 295
+
Sbjct: 264 L 264
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 159 NMNDREVVALKGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGCANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 15/181 (8%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + S A+ F +L N KN
Sbjct: 165 NMNDREVVALMGAHALGKTHLKN--SGYEGGGANNVFTNEFYLNLLN--EDWKLEKN--- 217
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 218 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 269
Query: 295 M 295
+
Sbjct: 270 L 270
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPQGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPYGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPQGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNCFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEN--WKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 160
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 161 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 215
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 216 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 267
Query: 295 M 295
+
Sbjct: 268 L 268
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 160 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLN--EDWKLEKN--- 214
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 215 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 266
Query: 295 M 295
+
Sbjct: 267 L 267
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDYDKDAGYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 165 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 219
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 220 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 271
Query: 295 M 295
+
Sbjct: 272 L 272
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDMDKDAGYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 17/183 (9%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNA 232
++ ++ AL G H LG H S ++ N N E N+ N+
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAAN-----NVFTNEKYLNLL---NEDWKL 210
Query: 233 GANMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSM 292
N DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+
Sbjct: 211 EKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 263
Query: 293 IKM 295
K+
Sbjct: 264 EKL 266
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPFGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 17/183 (9%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNA 232
++ ++ AL G H LG H S ++ N N E N+ N+
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAAN-----NVFTNEGYLNLL---NEDWKL 213
Query: 233 GANMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSM 292
N DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+
Sbjct: 214 EKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 266
Query: 293 IKM 295
K+
Sbjct: 267 EKL 269
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 17/183 (9%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNA 232
++ ++ AL G H LG H S ++ N N E N+ N+
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAAN-----NVFTNEYYLNLL---NEDWKL 210
Query: 233 GANMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSM 292
N DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+
Sbjct: 211 EKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 263
Query: 293 IKM 295
K+
Sbjct: 264 EKL 266
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNEN--WKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNEN--WKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 17/183 (9%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 95 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 154
Query: 175 GLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNA 232
++ ++ AL G H LG H S ++ N N E N+ N+
Sbjct: 155 NMNDREVVALMGAHALGKTHLKRSGYEGPFGAAN-----NVFTNEFYLNLL---NEDWKL 206
Query: 233 GANMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSM 292
N DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+
Sbjct: 207 EKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 259
Query: 293 IKM 295
K+
Sbjct: 260 EKL 262
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 17/183 (9%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 160
Query: 175 GLSMEDLAALSGGHTLGFAHC--SSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNA 232
++ ++ AL G H LG H S ++ N N E N+ N+
Sbjct: 161 NMNDREVVALMGAHALGKTHLKRSGYEGPFGAAN-----NVFTNEFYLNLL---NEDWKL 212
Query: 233 GANMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSM 292
N DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+
Sbjct: 213 EKN-DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAF 265
Query: 293 IKM 295
K+
Sbjct: 266 EKL 268
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 165 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 219
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + ++ +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 220 --DANNEQWDSK------SGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 271
Query: 295 M 295
+
Sbjct: 272 L 272
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMHLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 218
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + ++ +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 219 --DANNEQWDSK------SGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 295 M 295
+
Sbjct: 271 L 271
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + ++ +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG + A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAHALGKTELKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H A+ F +L N KN
Sbjct: 162 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 216
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + + +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 217 --DANNEQWDSK------SGYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 295 M 295
+
Sbjct: 269 L 269
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G H LG H + A+ F +L N KN
Sbjct: 165 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 219
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + + +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 220 --DANNEQWDSK------SGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 271
Query: 295 M 295
+
Sbjct: 272 L 272
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G LG H + A+ F +L N KN
Sbjct: 159 NMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 213
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 214 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 295 M 295
+
Sbjct: 266 L 266
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G LG H + A+ F +L N KN
Sbjct: 160 NMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 214
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 215 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 266
Query: 295 M 295
+
Sbjct: 267 L 267
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 115 VSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSKASETVQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D + +LP + ++ F +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 175 GLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTINPSFAESLRNICPIHNQAKNAGA 234
++ ++ AL G LG H + A+ F +L N KN
Sbjct: 160 NMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLN--EDWKLEKN--- 214
Query: 235 NMDASSATFDNTYYKLILQGKSLFASDQALLSHPETKNLVSKFASSHQSFNEAFVKSMIK 294
DA++ +D+ G + +D +L+ P+ ++V ++A+ F + F K+ K
Sbjct: 215 --DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 266
Query: 295 M 295
+
Sbjct: 267 L 267
>pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
pdb|3Q8M|B Chain B, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
Length = 341
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 28/197 (14%)
Query: 102 NAKKQVETLCPGVVSCADILALAARDAVVLS-GGPTWDVPKGRKDGRTSKASETVQLPAP 160
+A + E C +V + A A D L+ G P R ASE +LP
Sbjct: 153 DAPSEAEASCAALVKAGKVYAAATEDMACLTFGSPVL--------MRHLTASEAKKLPIQ 204
Query: 161 TFNISQLQQSFSQRGLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTI--NPSFAES 218
F++S++ Q GL+ E L LG +C S + I A I + S E
Sbjct: 205 EFHLSRILQEL---GLNQEQFVDLC--ILLGSDYCESIRG-IGPKRAVDLIQKHKSIEEI 258
Query: 219 LRNICPIHNQAKNAGANMDASSATFDNTYYKLILQGKSLFASDQAL-LSHPETKNLVSKF 277
+R + P + +A ++L L+ + L L S P + L+ KF
Sbjct: 259 VRRLDPNKYPVPENWLHKEA---------HQLFLEPEVLDPESVELKWSEPNEEELI-KF 308
Query: 278 ASSHQSFNEAFVKSMIK 294
+ F+E ++S +K
Sbjct: 309 MCGEKQFSEERIRSGVK 325
>pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 28/200 (14%)
Query: 102 NAKKQVETLCPGVVSCADILALAARDAVVLS-GGPTWDVPKGRKDGRTSKASETVQLPAP 160
+A + E C +V + A A D L+ G P R ASE +LP
Sbjct: 153 DAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVL--------MRHLTASEAKKLPIQ 204
Query: 161 TFNISQLQQSFSQRGLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTI--NPSFAES 218
F++S++ Q GL+ E L LG +C S + I A I + S E
Sbjct: 205 EFHLSRILQEL---GLNQEQFVDLC--ILLGSDYCESIRG-IGPKRAVDLIQKHKSIEEI 258
Query: 219 LRNICPIHNQAKNAGANMDASSATFDNTYYKLILQGKSLFASDQAL-LSHPETKNLVSKF 277
+R + P + +A ++L L+ + L L S P + L+ KF
Sbjct: 259 VRRLDPNKYPVPENWLHKEA---------HQLFLEPEVLDPESVELKWSEPNEEELI-KF 308
Query: 278 ASSHQSFNEAFVKSMIKMSS 297
+ F+E ++S +K S
Sbjct: 309 MCGEKQFSEERIRSGVKRLS 328
>pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 28/200 (14%)
Query: 102 NAKKQVETLCPGVVSCADILALAARDAVVLS-GGPTWDVPKGRKDGRTSKASETVQLPAP 160
+A + E C +V + A A D L+ G P R ASE +LP
Sbjct: 153 DAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVL--------MRHLTASEAKKLPIQ 204
Query: 161 TFNISQLQQSFSQRGLSMEDLAALSGGHTLGFAHCSSFQSRINTNNADPTI--NPSFAES 218
F++S++ Q GL+ E L LG +C S + I A I + S E
Sbjct: 205 EFHLSRILQEL---GLNQEQFVDLC--ILLGSDYCESIRG-IGPKRAVDLIQKHKSIEEI 258
Query: 219 LRNICPIHNQAKNAGANMDASSATFDNTYYKLILQGKSLFASDQAL-LSHPETKNLVSKF 277
+R + P + +A ++L L+ + L L S P + L+ KF
Sbjct: 259 VRRLDPNKYPVPENWLHKEA---------HQLFLEPEVLDPESVELKWSEPNEEELI-KF 308
Query: 278 ASSHQSFNEAFVKSMIKMSS 297
+ F+E ++S +K S
Sbjct: 309 MCGEKQFSEERIRSGVKRLS 328
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 158 PAPTFNISQLQQSFSQRGLSMEDLAAL-SGGHTLGFAHCSS 197
P P + ++Q+F + ++ ++ AAL +GGHT G H +
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGAD 268
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 158 PAPTFNISQLQQSFSQRGLSMEDLAAL-SGGHTLGFAHCSS 197
P P + ++Q+F + ++ ++ AAL +GGHT G H +
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGAD 268
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 158 PAPTFNISQLQQSFSQRGLSMEDLAAL-SGGHTLGFAHCSS 197
P P + ++Q+F + ++ ++ AAL +GGHT G H +
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGAD 268
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 158 PAPTFNISQLQQSFSQRGLSMEDLAAL-SGGHTLGFAHCSS 197
P P + ++Q+F + ++ ++ AAL +GGHT G H +
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGAD 268
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 158 PAPTFNISQLQQSFSQRGLSMEDLAAL-SGGHTLGFAHCSS 197
P P + ++Q+F + ++ ++ AAL +GGHT G H +
Sbjct: 228 PDPEASAKNIRQTFDRAAMNDKETAALIAGGHTFGKVHGAD 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,029,743
Number of Sequences: 62578
Number of extensions: 283802
Number of successful extensions: 971
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 124
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)