BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021433
         (312 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
           Containing The Ferm And Kinase Domains.
 pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
           Containing The Ferm And Kinase Domains
          Length = 656

 Score = 32.3 bits (72), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 51  ELYMIMLGSFLSMAMELVIGPEKHQPFDTDGTIPPNHLHNFEH 93
           E +   LGS   +++EL IGPE+   + TD    P HL +F  
Sbjct: 226 ECFKCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQ 268


>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
           Containing The Ferm And Kinase Domains
          Length = 656

 Score = 32.0 bits (71), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 51  ELYMIMLGSFLSMAMELVIGPEKHQPFDTDGTIPPNHLHNFEH 93
           E +   LGS   +++EL IGPE+   + TD    P HL +F  
Sbjct: 226 ECFKCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQ 268


>pdb|2J0M|A Chain A, Crystal Structure A Two-Chain Complex Between The Ferm And
           Kinase Domains Of Focal Adhesion Kinase
          Length = 371

 Score = 32.0 bits (71), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 51  ELYMIMLGSFLSMAMELVIGPEKHQPFDTDGTIPPNHLHNFEH 93
           E +   LGS   +++EL IGPE+   + TD    P HL +F  
Sbjct: 228 ECFKCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQ 270


>pdb|3ZDT|A Chain A, Crystal Structure Of Basic Patch Mutant Fak Ferm Domain
           Fak31-405 K216a, K218a, R221a, K222a
 pdb|3ZDT|B Chain B, Crystal Structure Of Basic Patch Mutant Fak Ferm Domain
           Fak31-405 K216a, K218a, R221a, K222a
          Length = 377

 Score = 32.0 bits (71), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 51  ELYMIMLGSFLSMAMELVIGPEKHQPFDTDGTIPPNHLHNFEH 93
           E +   LGS   +++EL IGPE+   + TD    P HL +F  
Sbjct: 228 ECFKCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQ 270


>pdb|2AEH|A Chain A, Focal Adhesion Kinase 1
 pdb|2AEH|B Chain B, Focal Adhesion Kinase 1
          Length = 369

 Score = 32.0 bits (71), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 51  ELYMIMLGSFLSMAMELVIGPEKHQPFDTDGTIPPNHLHNFEH 93
           E +   LGS   +++EL IGPE+   + TD    P HL +F  
Sbjct: 226 ECFKCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQ 268


>pdb|2AL6|A Chain A, Ferm Domain Of Focal Adhesion Kinase
 pdb|2AL6|B Chain B, Ferm Domain Of Focal Adhesion Kinase
          Length = 375

 Score = 32.0 bits (71), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 51  ELYMIMLGSFLSMAMELVIGPEKHQPFDTDGTIPPNHLHNFEH 93
           E +   LGS   +++EL IGPE+   + TD    P HL +F  
Sbjct: 226 ECFKCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQ 268


>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
           At 1.85 A
          Length = 400

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 190 GAWFILMGYMLWTPSLIPKGCFINSEEGHQVVRCHGAEALHRAKSLVNLQFSW 242
           G WF+L  YM  TPSL       N + G  V   H  + L +  +L  LQ  W
Sbjct: 21  GGWFVLQPYM--TPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHW 71


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,263,276
Number of Sequences: 62578
Number of extensions: 292412
Number of successful extensions: 630
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 9
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)