BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021433
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NWC5|TM45A_HUMAN Transmembrane protein 45A OS=Homo sapiens GN=TMEM45A PE=2 SV=1
Length = 275
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 7/220 (3%)
Query: 1 MGTLVGHVAPGFAFLALGLW----HLLNHIKLHSLRPNSYTSAPWFPTSRIKYLELYMIM 56
MG GH PG F +GLW +L +I R S F R++ LE I+
Sbjct: 1 MGNFRGHALPGTFFFIIGLWWCTKSILKYICKKQKRTCYLGSKTLF--YRLEILEGITIV 58
Query: 57 LGSFLSMAMELVIGPEKHQPFDTDGTIPPNHLHNFEHATISLTFFTYAALSIVLDKTCSK 116
+ MA E I H N L + H T+ FF ++ +L T S
Sbjct: 59 GMALTGMAGEQFIPGGPHLMLYDYKQGHWNQLLGWHHFTMYF-FFGLLGVADILCFTISS 117
Query: 117 LQYGLTQFLGAIAFGQQFLLFHLHSADHMGVEGQYHLLLQIVVLVSLITTLLGIGYPKSF 176
L LT+ + + A + +F+ H+ ++ H LL +VV ++ + L +
Sbjct: 118 LPVSLTKLMLSNALFVEAFIFYNHTHGREMLDIFVHQLLVLVVFLTGLVAFLEFLVRNNV 177
Query: 177 LVSFVRSASIFFQGAWFILMGYMLWTPSLIPKGCFINSEE 216
L+ +RS+ I QG+WF +G++L+ PS P ++ E
Sbjct: 178 LLELLRSSLILLQGSWFFQIGFVLYPPSGGPAWDLMDHEN 217
>sp|Q3T130|TM45B_BOVIN Transmembrane protein 45B OS=Bos taurus GN=TMEM45B PE=2 SV=1
Length = 276
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 37/291 (12%)
Query: 1 MGTLVGHVAPGFAFLALGLWHLLNHIKLHSLRPNSYTSAPWFPTSRIKYLELYMIMLGSF 60
M GH PG FL +GLW L + L ++ R++ +E + L +
Sbjct: 1 MANFKGHALPGSFFLIVGLWWSLKY-PLKYFYQKEKSNQLTHHYQRLEIIEAAIRTLFAV 59
Query: 61 LSMAMELVI--GPEKHQPFDTDGTIPPNHLHNFEHATISLTFFTYAALSIVLDKTCSKLQ 118
+ + +E + GP H + D + L N++H+T+ L FF + + +L + +
Sbjct: 60 IGILVEQFVPDGPHLHL-YHEDHWVK---LMNWQHSTMYL-FFAVSGIMDMLTYLITHVP 114
Query: 119 YGLTQFLGAIAFGQQFLLFHLHSADHMGVEGQYHLLLQIVVLVSLITTLLGIGYPKSFLV 178
GL + + A+A + LF+ H D ++ H LL V ++ + + + ++
Sbjct: 115 LGLDRLVMALAAFNEGFLFYYHVRDRPPLDQHIHSLLLYTVFGGALSLAVEVVLRDNIVL 174
Query: 179 SFVRSASIFFQGAWFILMGYMLWTPSLIPKGCFINSEEGHQVVRCHGAEALHRAKSLVNL 238
R++ + QG WF +G++L+ P P+ + H V +
Sbjct: 175 ELFRTSLLLLQGTWFWQIGFVLFPPFGGPE----------------WDQNSHDNIMFVTM 218
Query: 239 QFSW-FLIGVTIFSVSLYLVLDKFYGDQKVEYSSLTR-EEDEDSDDVESQK 287
F W +L + I + S LV Y LTR + ED + + QK
Sbjct: 219 CFCWHYLAALCILAASYSLV-----------YCFLTRVKRPEDREVIGIQK 258
>sp|Q96B21|TM45B_HUMAN Transmembrane protein 45B OS=Homo sapiens GN=TMEM45B PE=1 SV=1
Length = 275
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 17/214 (7%)
Query: 1 MGTLVGHVAPGFAFLALGL-WHLLNHIKLHSLRPNSYTSAPWFPTSRIKYLELYMIMLGS 59
M GH PG FL +GL W + +K S ++ ++P R++ +E + L S
Sbjct: 1 MANFKGHALPGSFFLIIGLCWSVKYPLKYFS---HTRKNSPLHYYQRLEIVEAAIRTLFS 57
Query: 60 FLSMAMELVI--GPEKHQPFDTDGTIPPNH---LHNFEHATISLTFFTYAALSIVLDKTC 114
+ E + GP H + NH L N++H+T+ L FF + + +L
Sbjct: 58 VTGILAEQFVPDGPHLHLYHE-------NHWIKLMNWQHSTMYL-FFAVSGIVDMLTYLV 109
Query: 115 SKLQYGLTQFLGAIAFGQQFLLFHLHSADHMGVEGQYHLLLQIVVLVSLITTLLGIGYPK 174
S + G+ + + A+A + LF+ H + ++ H LL + ++ L + +
Sbjct: 110 SHVPLGVDRLVMAVAVFMEGFLFYYHVHNRPPLDQHIHSLLLYALFGGCVSISLEVIFRD 169
Query: 175 SFLVSFVRSASIFFQGAWFILMGYMLWTPSLIPK 208
++ R++ I QG WF +G++L+ P P+
Sbjct: 170 HIVLELFRTSLIILQGTWFWQIGFVLFPPFGTPE 203
>sp|Q6P0S3|TM45B_DANRE Transmembrane protein 45B OS=Danio rerio GN=tmem45b PE=2 SV=1
Length = 283
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 10/210 (4%)
Query: 1 MGTLVGHVAPGFAFLALGLWHLLNHIKLHSLRPNSYTSAPWFPT------SRIKYLELYM 54
M GH PG FL GLW + LR +RI +E +
Sbjct: 1 MANFKGHALPGTFFLLFGLWWSIKCPFRQILRRKERQVGDRERQKLTALFNRIDLIEGSL 60
Query: 55 IMLGSFLSMAMELVIGPEKHQPFDTDGTIPPNHLHNFEHATISLTFFTYAALSIVLDKTC 114
+ +F+ + E + H DG + L N++H+T+ L F+ + ++ VL +
Sbjct: 61 KIFFAFVGIMAEQFVPDGPHAHLYQDGWVK---LMNWQHSTMYL-FYGISGIADVLSVSS 116
Query: 115 SKLQYGLTQFLGAIAFGQQFLLFHLHSADHMGVEGQYHLLLQIVVLVSLITTLLGIGYPK 174
+ GL + ++A + LF+ H + ++ H LL V +T++ + +
Sbjct: 117 HHVPVGLDRLFLSLALFVEGFLFYFHIHNREPLDQHIHSLLLFAVFGGSASTMMEVFKRE 176
Query: 175 SFLVSFVRSASIFFQGAWFILMGYMLWTPS 204
+ ++ +R QG WF +G++L+ S
Sbjct: 177 NAVLELLRCTLAILQGTWFYQIGFVLYPLS 206
>sp|Q6NS09|TM45B_XENLA Transmembrane protein 45B OS=Xenopus laevis GN=tmem45b PE=2 SV=1
Length = 280
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 19/210 (9%)
Query: 1 MGTLVGHVAPGFAFLALGLW-------HLLNHIKLHSLRPNSYTSAPWFPTSRIKYLELY 53
M GH PG FL GLW LN + R N R++ +E
Sbjct: 1 MANFKGHALPGSFFLVFGLWWSVKYPLRYLNSKVKGNCRSNK-------CYDRLELIEGI 53
Query: 54 MIMLGSFLSMAMELVI--GPEKHQPFDTDGTIPPNHLHNFEHATISLTFFTYAALSIVLD 111
+ L S + + E + GP H D + L N++H T+ L F+ + + +L
Sbjct: 54 LKALFSLIGILAEQFVPDGPHMHLVNGEDHSWVK--LMNWQHTTMYL-FYGISGVVDILT 110
Query: 112 KTCSKLQYGLTQFLGAIAFGQQFLLFHLHSADHMGVEGQYHLLLQIVVLVSLITTLLGIG 171
L GL + IA + LLF+ H + ++ H LL I V I+ ++ +
Sbjct: 111 YFPLNLPRGLDRLSLGIAVIVEGLLFYYHVHNRPALDQHIHSLLLIAVFGCAISIMIEVF 170
Query: 172 YPKSFLVSFVRSASIFFQGAWFILMGYMLW 201
++ R++ QG WF +G++L+
Sbjct: 171 MRNDIVLELFRASLSILQGTWFWQIGFVLY 200
>sp|Q497B2|TM45B_RAT Transmembrane protein 45B OS=Rattus norvegicus GN=Tmem45b PE=2 SV=1
Length = 278
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 14/214 (6%)
Query: 1 MGTLVGHVAPGFAFLALGLW----HLLNHIKLHSLRPNSYTSAPWFPTSRIKYLELYMIM 56
M GH PG FL GLW + L + L+ N + RI+ +E +
Sbjct: 1 MANFKGHALPGSFFLIFGLWWSVKYPLKYFHQKGLKKNRLS----LQQQRIEIIEGAVKA 56
Query: 57 LGSFLSMAMELVI--GPEKHQPFDTDGTIPPNHLHNFEHATISLTFFTYAALSIVLDKTC 114
L + + + E + GP H + T L N++H+T+ L F + ++
Sbjct: 57 LFAVIGILAEQFVPDGPHLHLYHENQWT----KLMNWQHSTMYLFFGVSGIIDMLTYLYF 112
Query: 115 SKLQYGLTQFLGAIAFGQQFLLFHLHSADHMGVEGQYHLLLQIVVLVSLITTLLGIGYPK 174
+ + GL + + A+A + LF+ H ++ H LL + + I+ L +
Sbjct: 113 NIVPLGLDRVVLAMAVFVEGFLFYFHVHGRPPLDQHIHSLLLFSLFGATISICLEVILRD 172
Query: 175 SFLVSFVRSASIFFQGAWFILMGYMLWTPSLIPK 208
+ ++ R+ + QG WF +G++L+ P P+
Sbjct: 173 NIVLELFRTTLLILQGTWFWQIGFVLFPPFGTPE 206
>sp|Q5XGD7|TM45B_XENTR Transmembrane protein 45B OS=Xenopus tropicalis GN=tmem45b PE=2
SV=1
Length = 280
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 19/217 (8%)
Query: 1 MGTLVGHVAPGFAFLALGLWHLLNHIKLHSLRPNSYTSAPWFPTSRIKYLELYMIMLGSF 60
M GH PG FL GLW + + P Y ++ R + ++
Sbjct: 1 MANFKGHALPGSFFLVFGLWWSVKY-------PLKYLNSKVKGNCRSNKCYERLELIEGI 53
Query: 61 LSMAMELV---------IGPEKHQPFDTDGTIPPNHLHNFEHATISLTFFTYAALSIVLD 111
L A L+ GP H D + L N++H T+ L F+ + + +L
Sbjct: 54 LKAAFALIGILAEQFVPDGPHMHLVNGEDHSWVK--LMNWQHTTMYL-FYGISGVVDILT 110
Query: 112 KTCSKLQYGLTQFLGAIAFGQQFLLFHLHSADHMGVEGQYHLLLQIVVLVSLITTLLGIG 171
L GL + IA + LLF+ H + ++ H LL I V I+ ++ +
Sbjct: 111 FLPLNLPRGLDRLSLGIAVIIEGLLFYYHVHNRPALDQHIHSLLLIAVFGGAISIMIEVF 170
Query: 172 YPKSFLVSFVRSASIFFQGAWFILMGYMLWTPSLIPK 208
++ RS+ QG WF +G++L+ P+
Sbjct: 171 MRNDIVLELFRSSLTILQGTWFWQIGFVLYPLGGAPE 207
>sp|Q8VCZ2|TM45B_MOUSE Transmembrane protein 45B OS=Mus musculus GN=Tmem45b PE=1 SV=1
Length = 278
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 14/209 (6%)
Query: 1 MGTLVGHVAPGFAFLALGLW----HLLNHIKLHSLRPNSYTSAPWFPTSRIKYLELYMIM 56
M GH PG FL +GLW + L + L+ N + RI+ +E +
Sbjct: 1 MANFKGHALPGSFFLIVGLWWSVKYPLKYFHHKGLKNNRLSRQ----QERIEIIEGAVKT 56
Query: 57 LGSFLSMAMELVI--GPEKHQPFDTDGTIPPNHLHNFEHATISLTFFTYAALSIVLDKTC 114
L + + + E + GP H + L N++H+T+ L F + ++
Sbjct: 57 LFAIIGILAEQFVPDGPHLHLYHENQWV----KLMNWQHSTMYLFFGVSGLMDMITYLYF 112
Query: 115 SKLQYGLTQFLGAIAFGQQFLLFHLHSADHMGVEGQYHLLLQIVVLVSLITTLLGIGYPK 174
+ GL + + A+A + LF+ H + ++ H LL + + ++ L +
Sbjct: 113 HIVPLGLDRVVLAMAVFIEGFLFYFHVHNRPPLDQHIHSLLLFGLFGAAVSISLEVILRD 172
Query: 175 SFLVSFVRSASIFFQGAWFILMGYMLWTP 203
+ ++ R++ + QG WF +G++L+ P
Sbjct: 173 NIVLELFRTSLLILQGTWFWQIGFVLFPP 201
>sp|Q60774|TM45A_MOUSE Transmembrane protein 45A OS=Mus musculus GN=Tmem45a PE=1 SV=1
Length = 273
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 5/206 (2%)
Query: 1 MGTLVGHVAPGFAFLALGLWHLLNHIKLHSLRPNSYTSAPWFPT--SRIKYLELYMIMLG 58
MG+ GH PG F A+G W + +I + + T T R + E +++L
Sbjct: 1 MGSFKGHALPGSFFFAMGFWWTMKNILKSVYKRQTRTCYLNSKTLLRRTEIWEGVVVLLM 60
Query: 59 SFLSMAMELVIGPEKHQPFDTDGTIPPNHLHNFEHATISLTFFTYAALSIVLDKTCSKLQ 118
S +A E I DG N + + H T+ L FF ++ ++ T + L
Sbjct: 61 SLTGIAGEQFISGGPALILHKDG--QWNQILGWHHTTMYL-FFGLQGITQIICFTTNVLP 117
Query: 119 YGLTQFLGAIAFGQQFLLFHLHSADHMGVEGQYHLLLQIVVLVSLITTLLGIGYPKSFLV 178
++ + +IA + +F+ H+ ++ H LL V S + L + L+
Sbjct: 118 LSSSKLMLSIAIFVETFMFYNHTHGREMIDIFVHQLLVFVGTFSGLVAFLEFLVKNNALL 177
Query: 179 SFVRSASIFFQGAWFILMGYMLWTPS 204
+R + + FQG WF M ++L+ P
Sbjct: 178 ELLRCSLLMFQGTWFWQMAFVLYPPC 203
>sp|Q2NJ15|RPOB_AYWBP DNA-directed RNA polymerase subunit beta OS=Aster yellows
witches'-broom phytoplasma (strain AYWB) GN=rpoB PE=3
SV=1
Length = 1273
Score = 40.4 bits (93), Expect = 0.016, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 19/168 (11%)
Query: 146 GVEGQYHLLLQIVVLVSLITTLLGIGYPKSFLVSFVRSASIFFQGAWFILMGYMLWTPSL 205
G Q ++LL + L++ T + G + + VRSAS++F G + I + +++ +
Sbjct: 104 GETKQSNILLTELPLMTSTGTFIINGTERVVVSQIVRSASVYFAGNFDIKLNRTIYSGQV 163
Query: 206 IP-KGCFINSEEGHQVVRCHGAEALHRAKSLVNLQFSWFLIGVTIFSVSLYLVLDKFYGD 264
IP +G +I EEG + + L R+K + S F+ + S ++ +G
Sbjct: 164 IPSRGAWIEYEEGSKEIL---YAKLDRSK---KIPLSNFIYALGFDSKE---AIENVFGK 214
Query: 265 QKVEYSSLTREEDEDSDDVESQKEHKLDESKSFIAMGKKVFASVDMER 312
+ S +E D DSD+ L E S I G+KV VD R
Sbjct: 215 SAILDSVFDKETDMDSDNA-------LVELYSKIRQGEKV--PVDTAR 253
>sp|Q6YQW3|RPOB_ONYPE DNA-directed RNA polymerase subunit beta OS=Onion yellows
phytoplasma (strain OY-M) GN=rpoB PE=3 SV=1
Length = 1273
Score = 36.2 bits (82), Expect = 0.36, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 146 GVEGQYHLLLQIVVLVSLITTLLGIGYPKSFLVSFVRSASIFFQGAWFILMGYMLWTPSL 205
G Q ++LL + L++ T + G + + VRSAS++F G + + ++ +
Sbjct: 104 GETKQSNILLTELPLMTPTGTFVINGTERVVVSQIVRSASVYFAGNFDSKLNRTTYSGQV 163
Query: 206 IP-KGCFINSEEGHQVVRCHGAEALHRAKSLVNLQFSWFLIGVTIFSVSLYLVLDKFYGD 264
IP +G +I EEG + + L R+K + S F+ + S ++ +G
Sbjct: 164 IPSRGAWIEYEEGSKEIL---YAKLDRSK---KIPLSNFIYALGFDSKE---AIENVFGK 214
Query: 265 QKVEYSSLTREEDEDSDDVESQKEHKLDESKSFIAMGKKVFASVDMER 312
+ S +E D DSD+ L E S I G+KV VD R
Sbjct: 215 SAIIDSVFDKETDMDSDNA-------LVELYSKIRQGEKV--PVDTAR 253
>sp|Q6KCD5|NIPBL_MOUSE Nipped-B-like protein OS=Mus musculus GN=Nipbl PE=1 SV=1
Length = 2798
Score = 32.0 bits (71), Expect = 6.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 264 DQKVEYSSLTREEDEDSDDV--ESQKEHKLDESKSF 297
++K +Y+ ++ +ED DSD+ S+K HK D+ K++
Sbjct: 1074 NEKPKYAEISSDEDNDSDEAFESSRKRHKKDDDKAW 1109
>sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2
Length = 2804
Score = 32.0 bits (71), Expect = 6.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 264 DQKVEYSSLTREEDEDSDDV--ESQKEHKLDESKSF 297
++K +Y+ ++ +ED DSD+ S+K HK D+ K++
Sbjct: 1080 NEKPKYAEISSDEDNDSDEAFESSRKRHKKDDDKAW 1115
>sp|O94956|SO2B1_HUMAN Solute carrier organic anion transporter family member 2B1 OS=Homo
sapiens GN=SLCO2B1 PE=1 SV=2
Length = 709
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 27/162 (16%)
Query: 152 HLLLQIVVLVSLITTLLGIGYPKSFLV---SFVRSASIFFQGAWFILMGYMLWTPSLIPK 208
HL++ ++LVSL + L + + SF++ + G F+ + + W PS +
Sbjct: 559 HLVVPFLLLVSLGSALACLTHTPSFMLILRGVKKEDKTLAVGIQFMFLRILAWMPSPVIH 618
Query: 209 GCFINSEEGHQVVRCHGAEALHR-------AKSLVNLQFSWFLIGVTIFSVSLYLVLDKF 261
G I++ H + C G A+ R + LQF + V F++ L ++
Sbjct: 619 GSAIDTTCVHWALSC-GRRAVCRYYNNDLLRNRFIGLQFFFKTGSVICFALVLAVL---- 673
Query: 262 YGDQKVEYSSLTREEDEDSDDVESQKEHKLDESKSFIAMGKK 303
R++D+++ ES+ +++ GKK
Sbjct: 674 ------------RQQDKEARTKESRSSPAVEQQLLVSGPGKK 703
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,431,606
Number of Sequences: 539616
Number of extensions: 4621626
Number of successful extensions: 17827
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 17793
Number of HSP's gapped (non-prelim): 28
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)