Query 021433
Match_columns 312
No_of_seqs 151 out of 291
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04819 DUF716: Family of unk 100.0 8.4E-46 1.8E-50 315.1 15.3 137 117-257 1-137 (137)
2 PF10355 Ytp1: Protein of unkn 97.2 0.0045 9.8E-08 58.5 11.6 176 3-191 25-224 (271)
3 PF06679 DUF1180: Protein of u 74.3 3.7 8E-05 36.3 3.5 7 268-274 128-134 (163)
4 PF08507 COPI_assoc: COPI asso 73.9 53 0.0011 27.6 13.0 46 151-196 33-84 (136)
5 TIGR02736 cbb3_Q_epsi cytochro 71.0 5.4 0.00012 29.0 3.1 44 244-287 5-54 (56)
6 PHA03049 IMV membrane protein; 61.4 15 0.00033 27.7 3.9 28 245-273 6-33 (68)
7 PF01299 Lamp: Lysosome-associ 53.6 9.9 0.00021 36.4 2.4 46 220-272 261-306 (306)
8 COG4736 CcoQ Cbb3-type cytochr 51.8 22 0.00048 26.3 3.5 18 234-251 5-22 (60)
9 PF05961 Chordopox_A13L: Chord 51.2 26 0.00057 26.5 3.8 18 246-263 7-24 (68)
10 PF12606 RELT: Tumour necrosis 50.4 24 0.00052 25.1 3.3 6 258-263 23-28 (50)
11 KOG1314 DHHC-type Zn-finger pr 37.2 1.5E+02 0.0032 29.6 7.6 39 171-209 39-79 (414)
12 CHL00045 ccsA cytochrome c bio 34.1 4.1E+02 0.0089 25.7 10.3 86 90-175 5-96 (319)
13 PF05756 S-antigen: S-antigen 32.9 22 0.00047 27.8 1.0 9 267-275 55-63 (94)
14 PRK14859 tatA twin arginine tr 32.5 20 0.00043 26.7 0.7 15 242-256 7-21 (63)
15 PRK14860 tatA twin arginine tr 32.1 21 0.00045 26.7 0.7 15 242-256 7-21 (64)
16 PF01102 Glycophorin_A: Glycop 30.8 66 0.0014 27.1 3.6 41 234-275 65-105 (122)
17 PF13038 DUF3899: Domain of un 27.6 27 0.00058 27.2 0.7 15 261-275 31-45 (92)
18 PF12768 Rax2: Cortical protei 25.5 73 0.0016 30.4 3.4 30 244-274 237-266 (281)
19 PF11052 Tr-sialidase_C: Trans 25.5 67 0.0015 19.7 2.0 21 2-22 2-22 (25)
20 PF05545 FixQ: Cbb3-type cytoc 23.3 1.7E+02 0.0036 20.1 4.0 15 236-250 7-21 (49)
21 COG2864 FdnI Cytochrome b subu 20.1 1.4E+02 0.0031 27.6 4.0 32 144-177 10-41 (218)
No 1
>PF04819 DUF716: Family of unknown function (DUF716) ; InterPro: IPR006904 These sequences are a family of uncharacterised hypothetical proteins restricted to eukaryotes. Q9SLW7 from SWISSPROT represents a sequence from Nicotiana tabacum (Common tobacco)which is up regulated in response to TMV infection.
Probab=100.00 E-value=8.4e-46 Score=315.06 Aligned_cols=137 Identities=43% Similarity=0.764 Sum_probs=132.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhhhhhHHhh
Q 021433 117 LQYGLTQFLGAIAFGQQFLLFHLHSADHMGVEGQYHLLLQIVVLVSLITTLLGIGYPKSFLVSFVRSASIFFQGAWFILM 196 (312)
Q Consensus 117 ~p~~l~~l~~alAF~~E~lLf~~H~~~~~~le~~~H~LL~~~i~~~~~~~~le~~~p~sfl~~l~rs~~~llQGtWf~Qi 196 (312)
+|.+++++++++||++|++|||+|++||+++|++||.||++++++|++++++|+++|+|++++++||+++++|||||+||
T Consensus 1 lP~~l~~l~~alAF~~e~lLf~~H~~~~~~le~~~H~LL~~~i~~~~~~~~le~~~p~~~~~~~~r~~~~~lqGtWf~Q~ 80 (137)
T PF04819_consen 1 LPVGLEQLFLALAFFVEGLLFYFHSHDHSGLEGRVHSLLLLPIFLCALSTLLEAWFPNSFLAELLRSSSILLQGTWFWQI 80 (137)
T ss_pred CChhHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheecCCCCCCCCcccCCCCCcceeccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021433 197 GYMLWTPSLIPKGCFINSEEGHQVVRCHGAEALHRAKSLVNLQFSWFLIGVTIFSVSLYLV 257 (312)
Q Consensus 197 GfiLy~p~~~p~Gc~~~d~~~~~~v~C~~~~~~~ra~~~~~l~F~Whl~~~~v~~~~~y~~ 257 (312)
|++||+|++ |+||++.+++ +++|+.+|+.|||+|++|++||||+++++++++++|++
T Consensus 81 g~~Ly~p~~-p~GC~~~~~~---~~~c~~~~~~~r~~~~~~l~F~wh~~~v~~~~~~~y~~ 137 (137)
T PF04819_consen 81 GFILYPPSF-PKGCHLDEDS---STGCDWDEDDHRAVMFATLQFCWHLAFVLIFVLVLYGV 137 (137)
T ss_pred HHHhcCCCC-CCccccccCC---CcCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999 9999966543 78999999999999999999999999999999999974
No 2
>PF10355 Ytp1: Protein of unknown function (Ytp1); InterPro: IPR018827 This entry represents a conserved sequence region found a family of fungal proteins. It appears to contain regions similar to mitochondrial electron transport proteins. The C-terminal domain is hydrophobic and negatively charged. There are consensus sites for both N-linked glycosylation and cAMP-dependent protein kinase phosphorylation [].
Probab=97.20 E-value=0.0045 Score=58.47 Aligned_cols=176 Identities=13% Similarity=0.169 Sum_probs=117.5
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHh-------hCCCCCcCCCCCCC-ccchhHHHHHHHHHHHHHHhhHHhcCCCCC
Q 021433 3 TLVGHVAPGFAFLALGLWHLLNHIKLHS-------LRPNSYTSAPWFPT-SRIKYLELYMIMLGSFLSMAMELVIGPEKH 74 (312)
Q Consensus 3 sf~GH~lPG~~Fl~~GLW~~~~~~~~y~-------~~~~~y~~~~~~P~-~r~~~lE~~l~i~~~~i~i~~Elf~~~~~~ 74 (312)
+-.-|.+=|..|+.+|+--+-.+.-.+. ++|..-. +.+.+. +..+.+|..++.+-+++-+..|=.-++
T Consensus 25 ~cLAH~IkGg~F~~yGiltl~rylg~~~~~GwaWn~~~~~~~-~~~~~~~~S~Ef~eS~vI~~yG~tN~F~EH~~~~--- 100 (271)
T PF10355_consen 25 QCLAHFIKGGIFFWYGILTLARYLGIFAELGWAWNRKPSRPN-RFWRRRGPSQEFVESFVIFFYGITNTFTEHLGGW--- 100 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHcchhhhccccccc-cccccCCCCHHHHHHHHHHHHhhHHHHHHhccCC---
Confidence 4456899999999999985444433333 3332211 112111 233599999999999999999975433
Q ss_pred ccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhcccc------chhhHHHHHHHHHHHHHHHHHHHhcCCCCCch
Q 021433 75 QPFDTDGTIPPNHLHNFEHATISLTFFTYAALSIVLDKTCSK------LQYGLTQFLGAIAFGQQFLLFHLHSADHMGVE 148 (312)
Q Consensus 75 ~~~~~~g~~p~~~l~n~qH~tmy~~F~l~g~v~ll~~~~~~~------~p~~l~~l~~alAF~~E~lLf~~H~~~~~~le 148 (312)
+|.+ ..+++||.+|-+.|+--|++.++.++.+.+ -|.---+.+=|+.-+.-+.++.-| +++..+.
T Consensus 101 -----~g~W---s~~DlQH~si~vm~~~gGl~Gi~le~~~~~~~l~~~~~~~s~Np~PalvI~~TG~~MS~H-~Q~~~~S 171 (271)
T PF10355_consen 101 -----GGEW---SHKDLQHTSIGVMWWGGGLCGILLERKRVRWRLNTASYGFSRNPFPALVIFLTGWAMSQH-HQASMIS 171 (271)
T ss_pred -----CCCC---CcccchhhhhHHHHHHhhhhhheeeccccchhhccCCCCCCCCCcccHHHHHHHHHHhhc-chhhHHH
Confidence 2321 567899999999999999999998874310 000011223344556667777777 4567889
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcC----------CCchHHHHHHHHHHHhhhh
Q 021433 149 GQYHLLLQIVVLVSLITTLLGIGY----------PKSFLVSFVRSASIFFQGA 191 (312)
Q Consensus 149 ~~~H~LL~~~i~~~~~~~~le~~~----------p~sfl~~l~rs~~~llQGt 191 (312)
..+|...-++.....++=++|+.+ |+...-+.+-+..++--|.
T Consensus 172 T~IH~~wG~lL~~a~~~Riit~~~l~~~~~~~~~ps~p~te~l~~F~L~~gGl 224 (271)
T PF10355_consen 172 TMIHSQWGYLLMGAGLFRIITICFLLLDPPSSSLPSRPPTELLTPFCLIAGGL 224 (271)
T ss_pred HHHHHHHHHHHHHHHHHHheeeEEEecCCCccccCCCCchhHHHHHHHHHHhH
Confidence 999999999999999998888754 3345566666666555443
No 3
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=74.30 E-value=3.7 Score=36.26 Aligned_cols=7 Identities=43% Similarity=0.700 Sum_probs=4.3
Q ss_pred ccccccc
Q 021433 268 EYSSLTR 274 (312)
Q Consensus 268 ~Y~~L~~ 274 (312)
+|.-|++
T Consensus 128 kYgvl~~ 134 (163)
T PF06679_consen 128 KYGVLTT 134 (163)
T ss_pred eecccCC
Confidence 5766654
No 4
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=73.85 E-value=53 Score=27.57 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC-----chH-HHHHHHHHHHhhhhhHHhh
Q 021433 151 YHLLLQIVVLVSLITTLLGIGYPK-----SFL-VSFVRSASIFFQGAWFILM 196 (312)
Q Consensus 151 ~H~LL~~~i~~~~~~~~le~~~p~-----sfl-~~l~rs~~~llQGtWf~Qi 196 (312)
...+-.+.+..+++..++|.-.+. .|+ -.++|+...++.|++.+..
T Consensus 33 ~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l~~~~ 84 (136)
T PF08507_consen 33 SFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTLCLGQ 84 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHHHHhh
Confidence 556667888999999999985433 122 3467777777777665544
No 5
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=70.96 E-value=5.4 Score=29.00 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCc---c---ccccccccCCCCccchhhhh
Q 021433 244 LIGVTIFSVSLYLVLDKFYGDQK---V---EYSSLTREEDEDSDDVESQK 287 (312)
Q Consensus 244 l~~~~v~~~~~y~~~~~~~~~~~---~---~Y~~L~~~~~~~~~d~~~~~ 287 (312)
.++++.+++++|+.+...|..++ . +|.-|.-.++-||+=+|+.+
T Consensus 5 f~~ti~lvv~LYgY~yhLYrsek~G~rdYEKY~~LAL~D~ldd~~lE~r~ 54 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYHLYRSQKKGERDYEKYANLALNDDLDDSLIEPRR 54 (56)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCHHHHhhhhccccccchhccccc
Confidence 35667778888998888775332 1 35544433333444555443
No 6
>PHA03049 IMV membrane protein; Provisional
Probab=61.44 E-value=15 Score=27.69 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccccccc
Q 021433 245 IGVTIFSVSLYLVLDKFYGDQKVEYSSLT 273 (312)
Q Consensus 245 ~~~~v~~~~~y~~~~~~~~~~~~~Y~~L~ 273 (312)
+++.++++++-++++..|. |+..++.=+
T Consensus 6 ~l~iICVaIi~lIvYgiYn-kk~~~q~~~ 33 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYN-KKTTTSQNP 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHh-cccccCCCC
Confidence 3455555555566666665 444555444
No 7
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=53.56 E-value=9.9 Score=36.37 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=32.6
Q ss_pred ceeccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccc
Q 021433 220 VVRCHGAEALHRAKSLVNLQFSWFLIGVTIFSVSLYLVLDKFYGDQKVEYSSL 272 (312)
Q Consensus 220 ~v~C~~~~~~~ra~~~~~l~F~Whl~~~~v~~~~~y~~~~~~~~~~~~~Y~~L 272 (312)
.-.|..|+. -+++.|.=..-++++++++++.|++--|| ++.+|+++
T Consensus 261 a~~C~~D~~----~~~vPIaVG~~La~lvlivLiaYli~Rrr---~~~gYq~~ 306 (306)
T PF01299_consen 261 AEECSSDDT----SDLVPIAVGAALAGLVLIVLIAYLIGRRR---SRAGYQSI 306 (306)
T ss_pred hhcCCcCCc----cchHHHHHHHHHHHHHHHHHHhheeEecc---cccccccC
Confidence 456887764 36888888888888888888888775444 23479864
No 8
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.79 E-value=22 Score=26.26 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021433 234 SLVNLQFSWFLIGVTIFS 251 (312)
Q Consensus 234 ~~~~l~F~Whl~~~~v~~ 251 (312)
|+....++|-++...++.
T Consensus 5 ~~~~~a~a~~t~~~~l~f 22 (60)
T COG4736 5 MMRGFADAWGTIAFTLFF 22 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566777665554443
No 9
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=51.17 E-value=26 Score=26.49 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 021433 246 GVTIFSVSLYLVLDKFYG 263 (312)
Q Consensus 246 ~~~v~~~~~y~~~~~~~~ 263 (312)
++.++++++-++++..|.
T Consensus 7 Li~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444555555555554
No 10
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=50.36 E-value=24 Score=25.14 Aligned_cols=6 Identities=50% Similarity=0.556 Sum_probs=4.2
Q ss_pred HHHhhc
Q 021433 258 LDKFYG 263 (312)
Q Consensus 258 ~~~~~~ 263 (312)
+.|+||
T Consensus 23 ~~K~yg 28 (50)
T PF12606_consen 23 TLKAYG 28 (50)
T ss_pred Hhhccc
Confidence 567777
No 11
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=37.15 E-value=1.5e+02 Score=29.60 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=31.0
Q ss_pred cCCCchHHHHHHHHHHHhh--hhhHHhhhhheecCCCCCCC
Q 021433 171 GYPKSFLVSFVRSASIFFQ--GAWFILMGYMLWTPSLIPKG 209 (312)
Q Consensus 171 ~~p~sfl~~l~rs~~~llQ--GtWf~QiGfiLy~p~~~p~G 209 (312)
|.|.+-...+...+.++++ ++|+=-.-.++..|.++|.|
T Consensus 39 w~p~ss~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~ 79 (414)
T KOG1314|consen 39 WFPLSSFLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLG 79 (414)
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 5788888888888888776 45766666677899999987
No 12
>CHL00045 ccsA cytochrome c biogenesis protein
Probab=34.09 E-value=4.1e+02 Score=25.70 Aligned_cols=86 Identities=15% Similarity=0.066 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh--c-c-ccchhhHHHHHHHHHHHHHHHH--HHHhcCCCCCchhHHHHHHHHHHHHHH
Q 021433 90 NFEHATISLTFFTYAALSIVLDK--T-C-SKLQYGLTQFLGAIAFGQQFLL--FHLHSADHMGVEGQYHLLLQIVVLVSL 163 (312)
Q Consensus 90 n~qH~tmy~~F~l~g~v~ll~~~--~-~-~~~p~~l~~l~~alAF~~E~lL--f~~H~~~~~~le~~~H~LL~~~i~~~~ 163 (312)
++++..-...|.+|++..+..-. . + .+.=...-+.++.++|..+... .+....+|.++.+-+-.+..+.-.+.+
T Consensus 5 ~~~~~~~~~~~~~y~ls~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ht~~l~~r~~~~g~~P~snlyE~l~f~aw~~~~ 84 (319)
T CHL00045 5 TLEHILTHISFSLLSIVTLIYWITLLVDEIIGLYDSSEKGMIITFFCITGLLVTRWIYSGHFPLSNLYESLIFLSWSLSI 84 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 34555555555555555433221 1 1 1112345666777778777654 444677899999999999998888888
Q ss_pred HHHHhhhcCCCc
Q 021433 164 ITTLLGIGYPKS 175 (312)
Q Consensus 164 ~~~~le~~~p~s 175 (312)
+..+.+...|+.
T Consensus 85 v~l~~~~~~~~~ 96 (319)
T CHL00045 85 IHIVPYFKKKKN 96 (319)
T ss_pred HHHHHHHHHHHH
Confidence 888888776665
No 13
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=32.89 E-value=22 Score=27.78 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=5.7
Q ss_pred ccccccccc
Q 021433 267 VEYSSLTRE 275 (312)
Q Consensus 267 ~~Y~~L~~~ 275 (312)
.+|+-|..|
T Consensus 55 ~ky~dleee 63 (94)
T PF05756_consen 55 QKYEDLEEE 63 (94)
T ss_pred cchhhHHHh
Confidence 458877653
No 14
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=32.48 E-value=20 Score=26.72 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 021433 242 WFLIGVTIFSVSLYL 256 (312)
Q Consensus 242 Whl~~~~v~~~~~y~ 256 (312)
|++++++++++++++
T Consensus 7 ~ElliIlvv~LlvfG 21 (63)
T PRK14859 7 PELIVILVIVLIVFG 21 (63)
T ss_pred HHHHHHHHHHHHHhC
Confidence 677877777777775
No 15
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=32.06 E-value=21 Score=26.71 Aligned_cols=15 Identities=13% Similarity=0.137 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q 021433 242 WFLIGVTIFSVSLYL 256 (312)
Q Consensus 242 Whl~~~~v~~~~~y~ 256 (312)
|++++++++++++++
T Consensus 7 ~ElliI~vIalllfG 21 (64)
T PRK14860 7 PELIVILVIALVVFG 21 (64)
T ss_pred HHHHHHHHHHHhhcC
Confidence 677777777777665
No 16
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.78 E-value=66 Score=27.08 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccc
Q 021433 234 SLVNLQFSWFLIGVTIFSVSLYLVLDKFYGDQKVEYSSLTRE 275 (312)
Q Consensus 234 ~~~~l~F~Whl~~~~v~~~~~y~~~~~~~~~~~~~Y~~L~~~ 275 (312)
+++-|.|+.-..++.+++++.|++. |+....+..=+|+|.+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~ir-R~~Kk~~~~~~p~P~~ 105 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIR-RLRKKSSSDVQPLPEE 105 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHS-------------
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHH-HHhccCCCCCCCCCCC
Confidence 3566777765555555555555442 2222122345555544
No 17
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=27.57 E-value=27 Score=27.21 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=7.1
Q ss_pred hhcCCcccccccccc
Q 021433 261 FYGDQKVEYSSLTRE 275 (312)
Q Consensus 261 ~~~~~~~~Y~~L~~~ 275 (312)
.||.|+..++.-.++
T Consensus 31 ~ygfrr~~~~~~~~~ 45 (92)
T PF13038_consen 31 SYGFRRLFRQIKKKK 45 (92)
T ss_pred HHHHHHHHHHhcccc
Confidence 344455555555443
No 18
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.54 E-value=73 Score=30.43 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccccccccc
Q 021433 244 LIGVTIFSVSLYLVLDKFYGDQKVEYSSLTR 274 (312)
Q Consensus 244 l~~~~v~~~~~y~~~~~~~~~~~~~Y~~L~~ 274 (312)
.++.+.++++++.++++... |+.+|.+-|.
T Consensus 237 ALG~v~ll~l~Gii~~~~~r-~~~~~~~~p~ 266 (281)
T PF12768_consen 237 ALGTVFLLVLIGIILAYIRR-RRQGYVPAPT 266 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhccCcCCCc
Confidence 34445555566666666554 5556665554
No 19
>PF11052 Tr-sialidase_C: Trans-sialidase of Trypanosoma hydrophobic C-terminal; InterPro: IPR021287 This is a highly conserved region, of about 50aa, that is the very C terminus of a number of more diverse proteins from Trypanosoma cruzi. All members of the family are annotated putatively as being trans-sialidase but this appears to be a diverse group.
Probab=25.49 E-value=67 Score=19.68 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=15.2
Q ss_pred CCcccchhhhHHHHHHHHHHH
Q 021433 2 GTLVGHVAPGFAFLALGLWHL 22 (312)
Q Consensus 2 Gsf~GH~lPG~~Fl~~GLW~~ 22 (312)
||.-|..+.-+.++++|+|..
T Consensus 2 gt~~~~~~l~lLLlLLGLwGf 22 (25)
T PF11052_consen 2 GTVRGSGLLPLLLLLLGLWGF 22 (25)
T ss_pred CceeccchHHHHHHHHHHHHH
Confidence 455666666677779999974
No 20
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.27 E-value=1.7e+02 Score=20.14 Aligned_cols=15 Identities=13% Similarity=-0.040 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 021433 236 VNLQFSWFLIGVTIF 250 (312)
Q Consensus 236 ~~l~F~Whl~~~~v~ 250 (312)
.+...+|.+++.+++
T Consensus 7 ~~~~~~~~~v~~~~~ 21 (49)
T PF05545_consen 7 QGFARSIGTVLFFVF 21 (49)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 21
>COG2864 FdnI Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]
Probab=20.07 E-value=1.4e+02 Score=27.57 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhcCCCchH
Q 021433 144 HMGVEGQYHLLLQIVVLVSLITTLLGIGYPKSFL 177 (312)
Q Consensus 144 ~~~le~~~H~LL~~~i~~~~~~~~le~~~p~sfl 177 (312)
.+.+|-.+|+...+.-+++++|- +.+.+| +|.
T Consensus 10 ~t~~eR~~Hw~~ai~f~il~lSG-~~~~~~-~F~ 41 (218)
T COG2864 10 YTALERINHWIVAICFFILALSG-LAFFFP-DFM 41 (218)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-HHHHHh-HHH
Confidence 45678888998888877777776 667777 665
Done!