Query 021433
Match_columns 312
No_of_seqs 151 out of 291
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jo1_A Phospholemman; FXYD1, N 49.7 24 0.00083 25.9 4.5 42 243-285 21-62 (72)
2 1zza_A Stannin, AG8_1; helix, 26.5 1.1E+02 0.0038 22.6 4.9 22 248-274 21-42 (90)
3 2knc_A Integrin alpha-IIB; tra 20.3 1E+02 0.0034 21.3 3.4 9 249-257 25-33 (54)
4 2h88_D Succinate dehydrogenase 17.5 2.7E+02 0.0093 21.3 5.9 56 147-203 4-60 (103)
5 3vr8_D Succinate dehydrogenase 15.0 2.9E+02 0.0098 23.1 5.7 58 145-203 51-109 (156)
6 1sc3_B Interleukin-1 beta conv 13.9 41 0.0014 25.1 0.2 11 188-198 28-38 (88)
7 1qtn_B Caspase-8; apoptosis, d 10.9 58 0.002 24.6 0.2 11 188-198 32-42 (95)
8 2ql9_B Caspase-7; cysteine pro 10.8 59 0.002 24.5 0.2 10 189-198 31-40 (97)
9 2dko_B Caspase-3; low barrier 10.7 59 0.002 24.9 0.2 11 188-198 36-46 (103)
10 1pyo_B Caspase-2; apoptosis, c 10.5 62 0.0021 24.9 0.2 11 188-198 34-44 (105)
No 1
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=49.72 E-value=24 Score=25.86 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccccccccCCCCccchhh
Q 021433 243 FLIGVTIFSVSLYLVLDKFYGDQKVEYSSLTREEDEDSDDVES 285 (312)
Q Consensus 243 hl~~~~v~~~~~y~~~~~~~~~~~~~Y~~L~~~~~~~~~d~~~ 285 (312)
.+..++++++++-.++++++. .+..=++-+.++|||+.+..+
T Consensus 21 LifA~vLfi~GI~iilS~Kck-Ck~~qk~r~~~p~~e~g~~~~ 62 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCR-CKFNQQQRTGEPDEEEGTFRS 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHCTTTSSSCCCTTTSTHHH
T ss_pred hHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCCCccccccHHH
Confidence 345566666777777777663 111112333355555555543
No 2
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=26.45 E-value=1.1e+02 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhcCCccccccccc
Q 021433 248 TIFSVSLYLVLDKFYGDQKVEYSSLTR 274 (312)
Q Consensus 248 ~v~~~~~y~~~~~~~~~~~~~Y~~L~~ 274 (312)
++.++++-.+.+.+.. |-+|++
T Consensus 21 liavaalg~li~gcwc-----ylrlqr 42 (90)
T 1zza_A 21 LIAIAALGALILGCWC-----YLRLQR 42 (90)
T ss_dssp HHHHHHHHHHHHHHHT-----TTSSCS
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHH
Confidence 3334444444444443 455554
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.30 E-value=1e+02 Score=21.33 Aligned_cols=9 Identities=0% Similarity=0.353 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 021433 249 IFSVSLYLV 257 (312)
Q Consensus 249 v~~~~~y~~ 257 (312)
++.+.+|++
T Consensus 25 lL~li~~~L 33 (54)
T 2knc_A 25 LLTILVLAM 33 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333334443
No 4
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=17.48 E-value=2.7e+02 Score=21.30 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh-hcCCCchHHHHHHHHHHHhhhhhHHhhhhheecC
Q 021433 147 VEGQYHLLLQIVVLVSLITTLLG-IGYPKSFLVSFVRSASIFFQGAWFILMGYMLWTP 203 (312)
Q Consensus 147 le~~~H~LL~~~i~~~~~~~~le-~~~p~sfl~~l~rs~~~llQGtWf~QiGfiLy~p 203 (312)
=++.+|+..+-.+.++.+-...- +..| +++++.+-+.+++.+.=|=+|.-..=|.|
T Consensus 4 k~Gs~HW~~eR~~avallpL~p~~~~~~-~pv~d~~l~~~l~~H~~~G~q~vI~DYv~ 60 (103)
T 2h88_D 4 KAASLHWTSERAVSALLLGLLPAAYLYP-GPAVDYSLAAALTLHGHWGLGQVITDYVH 60 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHhcCeeeecccc
Confidence 46789999987777665544322 3344 46999999999999999999999988876
No 5
>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit, mitochondrial; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_D*
Probab=15.02 E-value=2.9e+02 Score=23.10 Aligned_cols=58 Identities=2% Similarity=-0.109 Sum_probs=46.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhh-hcCCCchHHHHHHHHHHHhhhhhHHhhhhheecC
Q 021433 145 MGVEGQYHLLLQIVVLVSLITTLLG-IGYPKSFLVSFVRSASIFFQGAWFILMGYMLWTP 203 (312)
Q Consensus 145 ~~le~~~H~LL~~~i~~~~~~~~le-~~~p~sfl~~l~rs~~~llQGtWf~QiGfiLy~p 203 (312)
+.-++.+|+..+=.+.++.+-...- +..| +.+++.+-+.+++++.=|=+|.-++=|.|
T Consensus 51 sa~~Gs~HW~~ERvtAvaLlpL~~~a~~~~-~pvlD~lLa~al~~H~h~GfqsvI~DYVp 109 (156)
T 3vr8_D 51 PLHSHGTLFKIERYFAAAMVPLIPAAYFIH-GREMDLCLALALTLHVHWGVWGVVNDYGR 109 (156)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhhhhheecc
Confidence 4568889999987777666655533 2455 57899999999999999999999998987
No 6
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=13.94 E-value=41 Score=25.14 Aligned_cols=11 Identities=27% Similarity=0.054 Sum_probs=8.4
Q ss_pred hhhhhHHhhhh
Q 021433 188 FQGAWFILMGY 198 (312)
Q Consensus 188 lQGtWf~QiGf 198 (312)
-+|+||+|.=.
T Consensus 28 ~~GSwfIq~Lc 38 (88)
T 1sc3_B 28 TMGSVFIGRLI 38 (88)
T ss_dssp TTEEHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 36999999644
No 7
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=10.89 E-value=58 Score=24.57 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=8.2
Q ss_pred hhhhhHHhhhh
Q 021433 188 FQGAWFILMGY 198 (312)
Q Consensus 188 lQGtWf~QiGf 198 (312)
-+|+||+|.=.
T Consensus 32 ~~GSwfIq~Lc 42 (95)
T 1qtn_B 32 AEGTWYIQSLC 42 (95)
T ss_dssp TTEEHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 36999999543
No 8
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=10.79 E-value=59 Score=24.53 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=7.9
Q ss_pred hhhhHHhhhh
Q 021433 189 QGAWFILMGY 198 (312)
Q Consensus 189 QGtWf~QiGf 198 (312)
+|+||+|.=.
T Consensus 31 ~GSwfIq~Lc 40 (97)
T 2ql9_B 31 RGSWFVQALC 40 (97)
T ss_dssp TEEHHHHHHH
T ss_pred CCCeeHHHHH
Confidence 7999999543
No 9
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=10.74 E-value=59 Score=24.91 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=8.1
Q ss_pred hhhhhHHhhhh
Q 021433 188 FQGAWFILMGY 198 (312)
Q Consensus 188 lQGtWf~QiGf 198 (312)
-+|+||+|.=.
T Consensus 36 ~~GSwfIq~Lc 46 (103)
T 2dko_B 36 KDGSWFIQSLC 46 (103)
T ss_dssp TTEEHHHHHHH
T ss_pred CCCCeeHHHHH
Confidence 36999999543
No 10
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=10.46 E-value=62 Score=24.90 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=8.3
Q ss_pred hhhhhHHhhhh
Q 021433 188 FQGAWFILMGY 198 (312)
Q Consensus 188 lQGtWf~QiGf 198 (312)
-+|+||+|.=.
T Consensus 34 ~~GSwFIq~Lc 44 (105)
T 1pyo_B 34 KRGSWYIEALA 44 (105)
T ss_dssp TTEEHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 37999999543
Done!