Citrus Sinensis ID: 021434

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVAEHESSSAL
cccccccccccccccEEEEEcccccccHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEcccHHHHHHHHHccccccccccEEEEccccccccccccccHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccEEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHcccEEEccccccccccHHHHHHHHHHHHHHHcccccccc
ccccEEEEEEcccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccEEEEEccccEEEEEEcccccHHHHHHHHHHcccccccEEEEEEEEccccHHHHHHcHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHccccEEEHccHHHHHHHHEEEccccccccccccccccccccccccEccccccccEEEEEccccccccccccccHHHHHccEEEEEcEEEcccccHHHHHHHHHHHHHHHcccccccc
merrgiaivnsdhkptimvtnddgidapgLRSLVRVLVSTNRytvqvcapdseksavshsitwrhpisarpadfdgvtayavsgtpadcaslgvsqalfpsvpdlvisginmgsncgyHVVYSGTVAGAREaffhgvpsvsisydwvggksnvndytLAAEACLPIINAILAEIrnqtypercflnidlptdipnnkgykltkqgTSIFKMGWRRVtsemqggkmlstmtmdtdsavtietdtstpleedLLFRREvrgahiadpdtdwqFLREGYitvtpigalsnadmESLLYFkdwlpvvaehesssal
merrgiaivnsdhkptimvtnddgidapgLRSLVRVLVSTNRYTVqvcapdseksavsHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIdlptdipnnkgykltkqgtsifkmgwRRVTSEMQGGKMLSTMTMDTDSAVtietdtstpleedLLFRREVRGahiadpdtdwqfLREGYITVTPIGALSNADMESLLYFKDWLPVVAEHESSSAL
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVAEHESSSAL
***************TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVT*******************************EDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVA********
***************TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVV*********
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA***********ITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVV*********
**RRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTS********************IETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVA********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVAEHESSSAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query312 2.2.26 [Sep-21-2011]
B7IH68255 5'-nucleotidase SurE OS=T yes no 0.733 0.898 0.362 1e-31
A6LL96255 5'-nucleotidase SurE OS=T yes no 0.737 0.901 0.356 3e-31
Q30YV9259 5'-nucleotidase SurE OS=D yes no 0.586 0.706 0.413 7e-31
Q3ADI0264 5'-nucleotidase SurE OS=C yes no 0.775 0.916 0.365 1e-30
A7HLM0259 5'-nucleotidase SurE OS=F yes no 0.727 0.876 0.372 3e-30
A6H213257 5'-nucleotidase SurE OS=F yes no 0.724 0.879 0.341 4e-30
Q30QB8264 5'-nucleotidase SurE OS=S yes no 0.791 0.935 0.337 1e-29
O67004251 5'-nucleotidase SurE OS=A yes no 0.589 0.733 0.395 2e-29
A1VY14258 5'-nucleotidase SurE OS=C yes no 0.788 0.953 0.312 2e-29
B8FC91253 5'-nucleotidase SurE OS=D yes no 0.778 0.960 0.332 2e-29
>sp|B7IH68|SURE_THEAB 5'-nucleotidase SurE OS=Thermosipho africanus (strain TCF52B) GN=surE PE=3 SV=1 Back     alignment and function desciption
 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 142/273 (52%), Gaps = 44/273 (16%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-D 75
           I+VTNDDG+ A G+  L R L  + +Y V V AP++E+SAV H+IT R P+  R  D  +
Sbjct: 3   ILVTNDDGVTADGILCLARTL--SKKYKVTVVAPETEQSAVGHAITLRLPLWLRKLDINE 60

Query: 76  GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFH 135
               Y+VSGTPADC  +G+   L    PDL+ISGIN G+N G  VVYSGTV+GA E    
Sbjct: 61  NFEIYSVSGTPADCVKMGIDVVLGEK-PDLLISGINRGNNLGTDVVYSGTVSGALEGAIA 119

Query: 136 GVPSVSI-SYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIP 194
           GVPS+++ SY +         Y  AA+  L      L E   ++ P    LNI++P+ +P
Sbjct: 120 GVPSIAVSSYSFENPM-----YETAAKFIL----DFLEEFDVRSIPRFTALNINVPS-VP 169

Query: 195 NN--KGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLL 252
            +  KG+KLT+Q   ++   + +   +  GG     M               T +E+D  
Sbjct: 170 YDQIKGWKLTRQSKRMYDDYFEKRV-DPSGGNYYWMM--------------GTIIEDD-- 212

Query: 253 FRREVRGAHIADPDTDWQFLREGYITVTPIGAL 285
                      DP  D++ + E Y++VTPI   
Sbjct: 213 ----------PDPKADYKAIAENYVSVTPISVF 235
Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.
Thermosipho africanus (strain TCF52B) (taxid: 484019)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 5
>sp|A6LL96|SURE_THEM4 5'-nucleotidase SurE OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q30YV9|SURE_DESDG 5'-nucleotidase SurE OS=Desulfovibrio desulfuricans (strain G20) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q3ADI0|SURE_CARHZ 5'-nucleotidase SurE OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A7HLM0|SURE_FERNB 5'-nucleotidase SurE OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A6H213|SURE_FLAPJ 5'-nucleotidase SurE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q30QB8|SURE_SULDN 5'-nucleotidase SurE OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|O67004|SURE_AQUAE 5'-nucleotidase SurE OS=Aquifex aeolicus (strain VF5) GN=surE PE=1 SV=1 Back     alignment and function description
>sp|A1VY14|SURE_CAMJJ 5'-nucleotidase SurE OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|B8FC91|SURE_DESAA 5'-nucleotidase SurE OS=Desulfatibacillum alkenivorans (strain AK-01) GN=surE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
255552207306 5'-nucleotidase surE, putative [Ricinus 0.971 0.990 0.735 1e-129
225432652308 PREDICTED: 5'-nucleotidase surE [Vitis v 0.980 0.993 0.696 1e-122
449504179307 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.967 0.983 0.677 1e-120
449432702307 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.967 0.983 0.677 1e-118
357444243306 5'-nucleotidase surE [Medicago truncatul 0.961 0.980 0.642 1e-115
297804776316 hypothetical protein ARALYDRAFT_493398 [ 0.961 0.949 0.652 1e-111
356497458303 PREDICTED: 5'-nucleotidase surE-like [Gl 0.948 0.976 0.643 1e-110
356541721303 PREDICTED: 5'-nucleotidase surE-like [Gl 0.948 0.976 0.632 1e-110
18414342315 5'-nucleotidase [Arabidopsis thaliana] g 0.961 0.952 0.645 1e-110
357480867307 5'-nucleotidase surE [Medicago truncatul 0.942 0.957 0.635 1e-106
>gi|255552207|ref|XP_002517148.1| 5'-nucleotidase surE, putative [Ricinus communis] gi|223543783|gb|EEF45311.1| 5'-nucleotidase surE, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/303 (73%), Positives = 253/303 (83%)

Query: 10  NSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA 69
           +SD KPTIM+TNDDGIDAPGLRSLVRVLV+TNR+ + VCAPDSEKSAVSHSIT+RHPISA
Sbjct: 4   SSDQKPTIMITNDDGIDAPGLRSLVRVLVATNRFRILVCAPDSEKSAVSHSITYRHPISA 63

Query: 70  RPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGA 129
           R  D +G  AYA+SGTPADCASLGVS ALFPSVPDLVISGINMGSNCGYH+VYSGTVAGA
Sbjct: 64  RRVDIEGTLAYAISGTPADCASLGVSTALFPSVPDLVISGINMGSNCGYHIVYSGTVAGA 123

Query: 130 REAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDL 189
           REAFF GVPS+SISYDWVGGKS + D+ L AEAC PII+AIL EI+N+TY   CFLNIDL
Sbjct: 124 REAFFFGVPSISISYDWVGGKSTIQDFALGAEACEPIISAILVEIKNRTYQSGCFLNIDL 183

Query: 190 PTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEE 249
           PT++ N+KGYKLT+QG SIFKMGWR+V S M+G KMLSTMTMDT SAV  E D S   +E
Sbjct: 184 PTNVANHKGYKLTRQGRSIFKMGWRQVHSGMEGRKMLSTMTMDTKSAVETEVDESNESQE 243

Query: 250 DLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVAEHESS 309
            + FRREVRGA + D D+D +FL+EGYITVTP+ ALS A+   L YF DWLP V +  S 
Sbjct: 244 QMWFRREVRGAQVDDEDSDHKFLQEGYITVTPLSALSRAENNCLGYFVDWLPGVVDRSSP 303

Query: 310 SAL 312
           SAL
Sbjct: 304 SAL 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432652|ref|XP_002282293.1| PREDICTED: 5'-nucleotidase surE [Vitis vinifera] gi|297737043|emb|CBI26244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449504179|ref|XP_004162274.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432702|ref|XP_004134138.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357444243|ref|XP_003592399.1| 5'-nucleotidase surE [Medicago truncatula] gi|355481447|gb|AES62650.1| 5'-nucleotidase surE [Medicago truncatula] Back     alignment and taxonomy information
>gi|297804776|ref|XP_002870272.1| hypothetical protein ARALYDRAFT_493398 [Arabidopsis lyrata subsp. lyrata] gi|297316108|gb|EFH46531.1| hypothetical protein ARALYDRAFT_493398 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356497458|ref|XP_003517577.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information
>gi|356541721|ref|XP_003539322.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information
>gi|18414342|ref|NP_567449.1| 5'-nucleotidase [Arabidopsis thaliana] gi|21593317|gb|AAM65266.1| unknown [Arabidopsis thaliana] gi|27311791|gb|AAO00861.1| expressed protein [Arabidopsis thaliana] gi|30984528|gb|AAP42727.1| At4g14930 [Arabidopsis thaliana] gi|332658124|gb|AEE83524.1| 5'-nucleotidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357480867|ref|XP_003610719.1| 5'-nucleotidase surE [Medicago truncatula] gi|355512054|gb|AES93677.1| 5'-nucleotidase surE [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
TAIR|locus:2129510315 AT4G14930 "AT4G14930" [Arabido 0.961 0.952 0.645 6e-103
TAIR|locus:2032652385 AT1G72880 "AT1G72880" [Arabido 0.679 0.550 0.483 7.8e-54
TIGR_CMR|GSU_1523262 GSU_1523 "stationary-phase sur 0.560 0.667 0.392 1.8e-31
TIGR_CMR|CJE_0339258 CJE_0339 "acid phosphatase Sur 0.586 0.709 0.385 1.8e-31
TIGR_CMR|CHY_0957264 CHY_0957 "acid phosphatase Sur 0.730 0.863 0.373 2.6e-31
UNIPROTKB|P0A840253 surE "broad specificity 5'(3') 0.551 0.679 0.391 3.2e-28
TIGR_CMR|SPO_2688260 SPO_2688 "acid phosphatase Sur 0.717 0.861 0.320 4.5e-27
TIGR_CMR|SO_3435248 SO_3435 "stationary-phase surv 0.557 0.701 0.382 9.4e-27
UNIPROTKB|Q487E6251 surE "5'-nucleotidase SurE" [C 0.551 0.685 0.401 1.5e-26
TIGR_CMR|CPS_1075251 CPS_1075 "acid phosphatase Sur 0.551 0.685 0.401 1.5e-26
TAIR|locus:2129510 AT4G14930 "AT4G14930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 197/305 (64%), Positives = 241/305 (79%)

Query:    11 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISAR 70
             S  +P IMVTNDDGIDAPGLRSLVRVLVSTN Y V+VCAPDSEKSAVSHSI W  P++A+
Sbjct:    10 SGERPIIMVTNDDGIDAPGLRSLVRVLVSTNLYDVRVCAPDSEKSAVSHSIIWSRPLTAK 69

Query:    71 PADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAR 130
               + DG TAY+V GTPADC  LG+S+ALFPS PDLV+SGIN+GSNCGY++VYSGTVAGAR
Sbjct:    70 RVEIDGATAYSVDGTPADCTGLGLSEALFPSRPDLVLSGINVGSNCGYNIVYSGTVAGAR 129

Query:   131 EAFFHGVPSVSISYD--WVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNID 188
             EAF + VPS SISYD  W  G+ N ND+ L+A+ACLPIIN IL  I+N+T+P +CFLNID
Sbjct:   130 EAFLYDVPSASISYDFDWKRGEMNANDFALSAQACLPIINGILGAIKNKTHPMQCFLNID 189

Query:   189 LPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAV-TIETDTSTPL 247
             LPTDI N+KGYKLT+QG S+ KMGWR+V  E QG KMLSTMTMDT+S V + E DTS   
Sbjct:   190 LPTDIANHKGYKLTRQGKSMGKMGWRQVEEEAQGPKMLSTMTMDTESGVVSSENDTSAHA 249

Query:   248 EEDL-LFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVAEH 306
              +D  LF+RE+R A I++  +D  +L+EG+ITVTP+GALS  D++   Y+K+WLP +   
Sbjct:   250 GKDSRLFKRELR-ASISEEGSDSHYLKEGFITVTPLGALSQTDVDCQNYYKEWLPKITNQ 308

Query:   307 ESSSA 311
               SS+
Sbjct:   309 SCSSS 313
GO:0003993 "acid phosphatase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2032652 AT1G72880 "AT1G72880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1523 GSU_1523 "stationary-phase survival protein SurE" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0339 CJE_0339 "acid phosphatase SurE" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0957 CHY_0957 "acid phosphatase SurE" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P0A840 surE "broad specificity 5'(3')-nucleotidase and polyphosphatase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2688 SPO_2688 "acid phosphatase SurE" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3435 SO_3435 "stationary-phase survival protein SurE" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q487E6 surE "5'-nucleotidase SurE" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1075 CPS_1075 "acid phosphatase SurE" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B1XPE2SURE_SYNP23, ., 1, ., 3, ., 50.32760.82370.9277yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.30.766
3rd Layer3.1.3.50.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019982001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (308 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002094001
SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (578 aa)
•    •  0.953
GSVIVG00015936001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (215 aa)
•     • 0.926
GSVIVG00025551001
RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)
•    •  0.922
GSVIVG00007310001
SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (182 aa)
•    •• 0.920
GSVIVG00014948001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (182 aa)
•    •• 0.920
GSVIVG00000429001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (534 aa)
•    •  0.919
GSVIVG00020561001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (220 aa)
•    •  0.917
GSVIVG00016858001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (405 aa)
     •  0.916
GSVIVG00034853001
SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (250 aa)
•    •  0.916
GSVIVG00018292001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (253 aa)
•    •  0.915

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
pfam01975188 pfam01975, SurE, Survival protein SurE 2e-69
PRK00346250 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatas 6e-66
COG0496252 COG0496, SurE, Predicted acid phosphatase [General 8e-61
TIGR00087244 TIGR00087, surE, 5'/3'-nucleotidase SurE 3e-47
PRK13935253 PRK13935, PRK13935, stationary phase survival prot 2e-46
PRK13933253 PRK13933, PRK13933, stationary phase survival prot 8e-44
PRK13931261 PRK13931, PRK13931, stationary phase survival prot 1e-30
PRK13932257 PRK13932, PRK13932, stationary phase survival prot 1e-30
PRK13934266 PRK13934, PRK13934, stationary phase survival prot 1e-22
>gnl|CDD|216821 pfam01975, SurE, Survival protein SurE Back     alignment and domain information 
 Score =  213 bits (546), Expect = 2e-69
 Identities = 77/195 (39%), Positives = 111/195 (56%), Gaps = 12/195 (6%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
           I++TNDDGI APG+R+L   L +     V V APD E+S V HSIT   P+  +  D   
Sbjct: 3   ILLTNDDGIHAPGIRALAEALKALGE--VTVVAPDREQSGVGHSITLHRPLRVKKVDP-- 58

Query: 77  VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHG 136
             AYAV+GTPADC  LG++  L    PDLV+SGIN G+N G  V+YSGTV  A EA   G
Sbjct: 59  -GAYAVNGTPADCVKLGLNGLLDDKKPDLVVSGINHGANLGTDVLYSGTVGAAMEAALLG 117

Query: 137 VPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN 196
           +PS+++S          +D+  AA+    ++  ++ ++     P    LN+++P   P+ 
Sbjct: 118 IPSIAVSLAG--NSEEKDDFETAAK----LVRRLVEKLLKNGLPPGTLLNVNIPDLPPSE 171

Query: 197 -KGYKLTKQGTSIFK 210
            KG K+T+ G   + 
Sbjct: 172 IKGIKVTRLGRRRYA 186

E. coli cells with the surE gene disrupted are found to survive poorly in stationary phase. It is suggested that SurE may be involved in stress response. Yeast also contains a member of the family, probable tubulin-tyrosine ligase PBY1. Yarrowia lipolytica PHO2 can complement a mutation in acid phosphatase, suggesting that members of this family could be phosphatases. Length = 188
>gnl|CDD|234732 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>gnl|CDD|223570 COG0496, SurE, Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>gnl|CDD|232819 TIGR00087, surE, 5'/3'-nucleotidase SurE Back     alignment and domain information
>gnl|CDD|237566 PRK13935, PRK13935, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184405 PRK13931, PRK13931, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|237565 PRK13934, PRK13934, stationary phase survival protein SurE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 312
PRK13932257 stationary phase survival protein SurE; Provisiona 100.0
PRK13935253 stationary phase survival protein SurE; Provisiona 100.0
PRK13933253 stationary phase survival protein SurE; Provisiona 100.0
PRK00346250 surE 5'(3')-nucleotidase/polyphosphatase; Provisio 100.0
COG0496252 SurE Predicted acid phosphatase [General function 100.0
PRK13931261 stationary phase survival protein SurE; Provisiona 100.0
TIGR00087244 surE 5'/3'-nucleotidase SurE. E. coli SurE is Reco 100.0
PRK13934266 stationary phase survival protein SurE; Provisiona 100.0
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 100.0
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 88.16
cd03784 401 GT1_Gtf_like This family includes the Gtfs, a grou 85.56
PLN02846 462 digalactosyldiacylglycerol synthase 85.56
>PRK13932 stationary phase survival protein SurE; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.8e-77  Score=552.04  Aligned_cols=250  Identities=29%  Similarity=0.475  Sum_probs=219.9

Q ss_pred             CCCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCC-CCeeEEecCChHHHH
Q 021434           12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCA   90 (312)
Q Consensus        12 ~~~~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~-g~~~~~v~GTPaDcV   90 (312)
                      .++|||||||||||+||||++|+++|++.|  +|+||||++||||+||++|+++|+++++++.+ +..+|+|+|||||||
T Consensus         3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV   80 (257)
T PRK13932          3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI   80 (257)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence            567999999999999999999999999877  89999999999999999999999999998643 455899999999999


Q ss_pred             HHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCCCCCcccHHHHHHHHHHHHHH
Q 021434           91 SLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAI  170 (312)
Q Consensus        91 ~~al~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l  170 (312)
                      ++||+. +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+....    ..+|+.+++++.++++++
T Consensus        81 ~lal~~-~~~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~~----~~~~~~aa~~~~~l~~~l  155 (257)
T PRK13932         81 KVALSH-ILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTYE----NADFTYAGKFARKLARKV  155 (257)
T ss_pred             HHHHHh-hcCCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccCC----cCCHHHHHHHHHHHHHHH
Confidence            999997 567799999999999999999999999999999999999999999985421    237999999999998876


Q ss_pred             HHHHHhcCCCCCcEEEecCCCCC-CCCCCeEEeecccccccceeeEEeeecCCceeeeeeeecCCccccccccCCCCCCc
Q 021434          171 LAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEE  249 (312)
Q Consensus       171 ~~~~~~~~~p~~~~lNVN~P~~~-~~~~gik~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g~~  249 (312)
                      +    +..+|++++||||||.++ .+.+|+|+|+||++.|.+.++++.                          +++|+.
T Consensus       156 ~----~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~~~~~~~~~~~~--------------------------dp~g~~  205 (257)
T PRK13932        156 L----REGLPPDTILSVNIPNVPESDIQGVLITRQGRSRWEEDAIERH--------------------------DMYGNP  205 (257)
T ss_pred             H----hcCCCCCcEEEEEeCCCCccccCCEEEeeCCCcccccceEEeE--------------------------CcCCCe
Confidence            6    346899999999999987 568999999999999987765432                          377888


Q ss_pred             ceeEeeeccCCCCCCCCChHHHHHCCCeeeccccCCCCCChHHHHHHHHHh
Q 021434          250 DLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWL  300 (312)
Q Consensus       250 ~~~~~~~~~~~~~~~~gtD~~al~~G~ISVTPL~~~~~t~~~~l~~~~~~~  300 (312)
                      |||+.+.... .+.+++||++++++||||||||+ +++|+++.++.++.|.
T Consensus       206 yywl~~~~~~-~~~~~~tD~~al~~GyISvTPL~-~dlT~~~~l~~l~~~~  254 (257)
T PRK13932        206 YYWLNGTLQL-LDDSLTQDEYAVRHNYVAVTPLS-CDLTNHDFLSSLEQWK  254 (257)
T ss_pred             EEEECCCccC-CCCCCCChHHHHHCCcEEEecCC-cCCcChHHHHHHHhhh
Confidence            9999965321 12367999999999999999999 7999999999998874

>PRK13935 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13933 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>COG0496 SurE Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>PRK13931 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>TIGR00087 surE 5'/3'-nucleotidase SurE Back     alignment and domain information
>PRK13934 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
2wqk_A251 Crystal Structure Of Sure Protein From Aquifex Aeol 1e-30
2v4o_A267 Crystal Structure Of Salmonella Typhimurium Sure At 2e-22
2v4n_A254 Crystal Structure Of Salmonella Typhimurium Sure At 3e-22
3ty2_A261 Structure Of A 5'-Nucleotidase (Sure) From Coxiella 5e-22
2e69_A244 Crystal Structure Of The Stationary Phase Survival 6e-22
1j9j_A247 Crystal Structure Analysis Of Sure Protein From T.M 1e-21
2e6h_A244 Crystal Structure Of E37a Mutant Of The Stationary 3e-21
1ilv_A247 Crystal Structure Analysis Of The Tm107 Length = 24 2e-20
1l5x_A280 The 2.0-Angstrom Resolution Crystal Structure Of A 2e-16
>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus Length = 251 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 108/197 (54%), Gaps = 13/197 (6%)
Query: 15  PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF 74
           PT ++ NDDG  +PG+ +L   L S  R  V V APD   S V HS+T+  P+  R  D 
Sbjct: 2   PTFLLVNDDGYFSPGINALREALKSLGR--VVVVAPDRNLSGVGHSLTFTEPLKMRKIDT 59
Query: 75  DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFF 134
           D  T   + GTPADC  LG    L    PDLV+SGIN G N G  + YSGTV+GA E   
Sbjct: 60  DFYTV--IDGTPADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRI 117
Query: 135 HGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DI 193
            G+PS++ S     G+ N+  +   A+ C+ I+  +L    N+  PE  +LN+++P    
Sbjct: 118 LGIPSIAFS---AFGRENIM-FEEIAKVCVDIVKKVL----NEGIPEDTYLNVNIPNLRY 169
Query: 194 PNNKGYKLTKQGTSIFK 210
              KG K+T+QG   +K
Sbjct: 170 EEIKGIKVTRQGKRAYK 186
>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75 Angstrom Resolution In Monoclinic Form Length = 267 Back     alignment and structure
>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7 Angstrom Resolution In Orthorhombic Form Length = 254 Back     alignment and structure
>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella Burnetii Length = 261 Back     alignment and structure
>pdb|2E69|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 In Complex With Sulfate Length = 244 Back     alignment and structure
>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima Length = 247 Back     alignment and structure
>pdb|2E6H|A Chain A, Crystal Structure Of E37a Mutant Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 Cocrystallized With Manganese And Amp Length = 244 Back     alignment and structure
>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107 Length = 247 Back     alignment and structure
>pdb|1L5X|A Chain A, The 2.0-Angstrom Resolution Crystal Structure Of A Survival Protein E (Sure) Homolog From Pyrobaculum Aerophilum Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 7e-69
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 2e-68
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 8e-68
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 3e-67
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 1e-65
1l5x_A280 SurviVal protein E; structural genomics, putative 9e-65
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Length = 247 Back     alignment and structure
 Score =  213 bits (546), Expect = 7e-69
 Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 64/296 (21%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-D 75
           I+VTNDDGI + G+  L  +L  +  + V V APD E+SA  HSIT   P+  +     +
Sbjct: 3   ILVTNDDGIQSKGIIVLAELL--SEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISE 60

Query: 76  GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFH 135
            V AY+ +GTPADC  L  +  +     DL++SG+N G N G  +++SGTV+GA E    
Sbjct: 61  RVVAYSTTGTPADCVKLAYN-VVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMM 119

Query: 136 GVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPN 195
            +PS++IS        +  D+  AA   +  +                 LNI    ++P 
Sbjct: 120 NIPSIAISSA---NYESP-DFEGAARFLIDFLKEFDF----SLLDPFTMLNI----NVPA 167

Query: 196 N--KGYKLTKQGTSIFKMGWRRVTSEM------QGGKMLSTMTMDTDSAVTIETDTSTPL 247
              KG++ T+Q    +   +    S          G+                      +
Sbjct: 168 GEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGE---------------------VI 206

Query: 248 EEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADM---ESLLYFKDWL 300
           E+D               D D++ +REGY+++TPI    +  +   + L   ++  
Sbjct: 207 EDD------------DRDDVDYKAVREGYVSITPI----HPFLTNEQCLKKLREVY 246
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} Length = 261 Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Length = 254 Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Length = 244 Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 100.0
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 100.0
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
2wqk_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 100.0
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 100.0
1l5x_A280 SurviVal protein E; structural genomics, putative 100.0
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 93.99
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 92.96
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 91.35
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 91.12
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 90.15
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 89.39
2iya_A 424 OLEI, oleandomycin glycosyltransferase; carbohydra 86.77
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 86.26
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 81.99
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0 Back     alignment and structure
Probab=100.00  E-value=4.1e-79  Score=566.42  Aligned_cols=252  Identities=29%  Similarity=0.451  Sum_probs=219.7

Q ss_pred             ccCCCCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHH
Q 021434            9 VNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPAD   88 (312)
Q Consensus         9 ~~~~~~~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaD   88 (312)
                      |+..++|||||||||||.||||++|+++|++ + |+|+||||++||||+||++|+++||++++++   ...|+|+|||+|
T Consensus         6 ~~~~~~m~ILlTNDDGi~apGi~aL~~~l~~-~-~~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~---~~~~~v~GTPaD   80 (261)
T 3ty2_A            6 KTATPKLRLLLSNDDGVYAKGLAILAKTLAD-L-GEVDVVAPDRNRSGASNSLTLNAPLHIKNLE---NGMISVEGTPTD   80 (261)
T ss_dssp             -----CCEEEEECSSCTTCHHHHHHHHHHTT-T-SEEEEEEESSCCTTCTTCCCCSSCEEEEECT---TSCEEESSCHHH
T ss_pred             hccCCCCeEEEEcCCCCCCHHHHHHHHHHHh-c-CCEEEEecCCCCcCcccceecCCCeEEEEec---CCeEEECCCHHH
Confidence            4566779999999999999999999999998 4 6999999999999999999999999999875   235999999999


Q ss_pred             HHHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCCCCCcccHHHHHHHHHHHH
Q 021434           89 CASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIIN  168 (312)
Q Consensus        89 cV~~al~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~~~~~~~~~aa~~~~~li~  168 (312)
                      ||++||++ +++.+|||||||||+|.|+|.+++||||||||+||+++||||||||+...    ...+|+.|++++.++++
T Consensus        81 CV~lal~~-l~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~----~~~~~~~aa~~~~~lv~  155 (261)
T 3ty2_A           81 CVHLAITG-VLPEMPDMVVAGINAGPNLGDDVWYSGTVAAAMEGRFLGLPALAVSLGGE----LFRYYETAAKVVYQLIQ  155 (261)
T ss_dssp             HHHHHTTT-TSSSCCSEEEEEEEESCCCGGGGGTCHHHHHC-CCSTTSCCEEEEEECSS----SCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hcCCCCCEEEECCcCCCCCCCCcCCchHHHHHHHHHHcCCCeEEEEcCCC----CccCHHHHHHHHHHHHH
Confidence            99999997 56789999999999999999999999999999999999999999999642    23579999999999998


Q ss_pred             HHHHHHHhcCCCCCcEEEecCCCCC-CCCCCeEEeecccccccceeeEEeeecCCceeeeeeeecCCccccccccCCCCC
Q 021434          169 AILAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPL  247 (312)
Q Consensus       169 ~l~~~~~~~~~p~~~~lNVN~P~~~-~~~~gik~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g  247 (312)
                      ++++    ..+|++++||||||.++ .+.+|+|+||||++.|.+.+.+.                          .+|+|
T Consensus       156 ~l~~----~~lp~~~~lNVN~P~~~~~~~kGi~vtr~g~r~~~~~~~~~--------------------------~dprG  205 (261)
T 3ty2_A          156 RIEK----DPLPPSTILNINVPDLPYEELKGFEVTRLGTRHRAEPTIRQ--------------------------IDPRG  205 (261)
T ss_dssp             HHHH----SCCCTTCEEEEEECSSCGGGCCEEEECBCCCBCSCCCCEEE--------------------------ECTTS
T ss_pred             HHHh----cCCCCCeEEEecCCCCCcccCCceEEEECcccccccceEEE--------------------------ECCCC
Confidence            8773    46899999999999987 57899999999999998766542                          13888


Q ss_pred             CcceeEeeeccCCCCCCCCChHHHHHCCCeeeccccCCCCCChHHHHHHHHHhhH
Q 021434          248 EEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPV  302 (312)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~gtD~~al~~G~ISVTPL~~~~~t~~~~l~~~~~~~~~  302 (312)
                      +.|||+.+.... ...++|||++||++||||||||+ +|+|+++.|+.|++|+..
T Consensus       206 ~~yyW~~g~~~~-~~~~~gTD~~av~~G~iSVTPl~-~DlT~~~~l~~l~~~~~~  258 (261)
T 3ty2_A          206 HPIYWVGAAGPE-QDSGPGTDFFAMNHHCVSITPLR-VDLTHYEAFDQLASWVKR  258 (261)
T ss_dssp             CEEEECCCCCCB-SSCSTTBHHHHHHTTEEEEEEBC-SCCBCGGGHHHHHHHHHH
T ss_pred             CeEEEEcCCccc-ccCCCCChHHHHHCCceEEEeEe-ecCccHHHHHHHHHHHhh
Confidence            999999986322 24589999999999999999999 799999999999999853
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Back     alignment and structure
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus} Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 312
d1l5xa_276 c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) { 5e-50
d1j9ja_247 c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga mar 1e-45
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog PAE2908 (SurE-alpha)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  165 bits (418), Expect = 5e-50
 Identities = 71/295 (24%), Positives = 113/295 (38%), Gaps = 42/295 (14%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
           I+VTNDDG+ +PGLR L +  +S     V V AP+S KSA    IT   P+     D  G
Sbjct: 3   ILVTNDDGVHSPGLRLLYQFALS--LGDVDVVAPESPKSATGLGITLHKPLRMYEVDLCG 60

Query: 77  VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVY-SGTVAGAREAFFH 135
             A A SGTP+D   L           D+V+SGIN+G N    V+  SGT+  A +A   
Sbjct: 61  FRAIATSGTPSDTVYLATFGLGRK--YDIVLSGINLGDNTSLQVILSSGTLGAAFQAALL 118

Query: 136 GVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPN 195
           G+P+++ S         +N+          + +     ++N        ++++ P  +  
Sbjct: 119 GIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLKNGMPQGVDVISVNFPRRLGR 178

Query: 196 NKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRR 255
               KL K     +                                         + +  
Sbjct: 179 GVRAKLVKAAKLRYAQQVVERVD-----------------------------PRGVRYYW 209

Query: 256 EVRGAHIADPDTD-WQFLREGYITVTPI-------GALSNADMESLLYFKDWLPV 302
                   +P+TD +  L+EG I +TP+        A    DM+SL    +++  
Sbjct: 210 LYGRDLAPEPETDVYVVLKEGGIAITPLTLNLNAVDAHREVDMDSLNRMVEYINA 264
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
d1j9ja_247 SurE homolog TM1662 {Thermotoga maritima [TaxId: 2 100.0
d1l5xa_276 SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyroba 100.0
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 86.59
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog TM1662
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.1e-76  Score=541.81  Aligned_cols=246  Identities=32%  Similarity=0.456  Sum_probs=216.5

Q ss_pred             CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccC-CCCeeEEecCChHHHHHHh
Q 021434           15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLG   93 (312)
Q Consensus        15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~-~g~~~~~v~GTPaDcV~~a   93 (312)
                      |||||||||||+||||++|+++|++ + |+|+||||++||||+|||+|+++|++++++.. ++...|+|+|||||||++|
T Consensus         1 M~ILltNDDGi~s~gl~~L~~~l~~-~-~~V~vvAP~~~~S~~g~ait~~~~l~~~~~~~~~~~~~~~v~GTPaDcv~~a   78 (247)
T d1j9ja_           1 MRILVTNDDGIQSKGIIVLAELLSE-E-HEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLA   78 (247)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTT-T-SEEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHH
T ss_pred             CeEEEEcCCCCCChHHHHHHHHHhc-C-CeEEEEecCCCCcCCcccccCCCCcceEEeecCCCceEEEeCCchHHHHHHh
Confidence            7899999999999999999999976 4 69999999999999999999999999999864 3556899999999999999


Q ss_pred             hhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCCCCCcccHHHHHHHHHHHHHHHHH
Q 021434           94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAE  173 (312)
Q Consensus        94 l~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~  173 (312)
                      |+. +++++|||||||||+|.|+|.+|+||||||||+||+++||||||||+...+    ..+|+.+++++.+++++++  
T Consensus        79 l~~-l~~~~pDlVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~gipsiA~S~~~~~----~~~~~~a~~~~~~li~~l~--  151 (247)
T d1j9ja_          79 YNV-VMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANYE----SPDFEGAARFLIDFLKEFD--  151 (247)
T ss_dssp             HHT-TSTTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCSS----SCCHHHHHHHHHHHHHHCC--
T ss_pred             hhh-cccCcccEEEecccCCCccchhhhhHHHHHHHHHHHhcCCCcceehhhhhc----ccchhHHHHHHHHHHHHHH--
Confidence            986 678899999999999999999999999999999999999999999997532    4579999999988887665  


Q ss_pred             HHhcCCCCCcEEEecCCCCCCCCCCeEEeecccccccceeeEEeeecCCceeeeeeeecCCccccccccCCCCCCcceeE
Q 021434          174 IRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLF  253 (312)
Q Consensus       174 ~~~~~~p~~~~lNVN~P~~~~~~~gik~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g~~~~~~  253 (312)
                        ...+|..++||||||.  .+.+|+++|++|++.|...+.+..                          +++|+.|||+
T Consensus       152 --~~~~p~~~~lNVN~P~--~~~kG~k~t~~g~~~~~~~~~~~~--------------------------~~~g~~~y~~  201 (247)
T d1j9ja_         152 --FSLLDPFTMLNINVPA--GEIKGWRFTRQSRRRWNDYFEERV--------------------------SPFGEKYYWM  201 (247)
T ss_dssp             --GGGSCTTCEEEEEECS--SCCCEEEECBCCCCEEEEEEEEEE--------------------------CTTSCEEEEE
T ss_pred             --hcCCcccccccCCCCh--hhccCceeeeeccccccccceeee--------------------------CCCCCeeEEe
Confidence              4567899999999997  468999999999988876554321                          3677888999


Q ss_pred             eeeccCCCCCCCCChHHHHHCCCeeeccccCCCCCChHHHHHHHHHhh
Q 021434          254 RREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLP  301 (312)
Q Consensus       254 ~~~~~~~~~~~~gtD~~al~~G~ISVTPL~~~~~t~~~~l~~~~~~~~  301 (312)
                      .+.... ...+++||++||++||||||||+ +|+|+++.|++|+++|+
T Consensus       202 ~~~~~~-~~~~~~tD~~al~~GyISVTPL~-~dlT~~~~l~~L~~~fd  247 (247)
T d1j9ja_         202 MGEVIE-DDDRDDVDYKAVREGYVSITPIH-PFLTNEQCLKKLREVYD  247 (247)
T ss_dssp             EEEEEC-CCCCSSBHHHHHHTTEEEEEEEC-SCCCCHHHHHHHHHHCC
T ss_pred             ccCccC-CCCCCChHHHHHHCCeEEEeecC-cCCcCHHHHHHHHHhhC
Confidence            886543 34578999999999999999999 69999999999999873
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure