BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021435
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IHR|A Chain A, Crystal Structure Of Uch37
Length = 328
Score = 276 bits (707), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 145/296 (48%), Positives = 201/296 (67%), Gaps = 26/296 (8%)
Query: 20 RPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINNACATQAILSILLNCP--DID 76
+PV+GLIFLFKW+PGE+ V++D +FFA QVINNACATQAI+S+LLNC D+
Sbjct: 47 KPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVH 106
Query: 77 IGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHF 136
+G LS+ KEF+++F KGLA++NSD IR HNSFAR + F + K + K++D +HF
Sbjct: 107 LGETLSEFKEFSQSFDAAXKGLALSNSDVIRQVHNSFARQQXF-EFDTKTSAKEEDAFHF 165
Query: 137 ISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLM 196
+SY+PV+G LYELDGL+EGPI LG C DW+ V+PVI++RI++YS+ EIRFNL
Sbjct: 166 VSYVPVNGRLYELDGLREGPIDLGACNQD----DWISAVRPVIEKRIQKYSEGEIRFNLX 221
Query: 197 AVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGAT 256
A++ +RK +Y ++ E QR QLA + + N LS + + E A
Sbjct: 222 AIVSDRKXIYEQKIAELQR-------QLAE-------EPXDTDQGNSXLSAIQS--EVAK 265
Query: 257 EKILMEEE--KFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSS 310
+ L+EEE K K+++ ENIRRKHNY+PF+ LK LAE +QL PL+EKAK+K ++
Sbjct: 266 NQXLIEEEVQKLKRYKIENIRRKHNYLPFIXELLKTLAEHQQLIPLVEKAKEKQNA 321
>pdb|3RIS|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|B Chain B, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|C Chain C, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|D Chain D, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
Length = 245
Score = 227 bits (578), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 148/199 (74%), Gaps = 8/199 (4%)
Query: 20 RPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINNACATQAILSILLNCP--DID 76
+PV+GLIFLFKW+PGE+ V++D +FFA QVINNACATQAI+S+LLNC D+
Sbjct: 52 KPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVH 111
Query: 77 IGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHF 136
+G LS+ KEF+++F +KGLA++NSD IR HNSFAR + F + K + K++D +HF
Sbjct: 112 LGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMF-EFDTKTSAKEEDAFHF 170
Query: 137 ISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLM 196
+SY+PV+G LYELDGL+EGPI LG C DW+ V+PVI++RI++YS+ EIRFNLM
Sbjct: 171 VSYVPVNGRLYELDGLREGPIDLGACN----QDDWISAVRPVIEKRIQKYSEGEIRFNLM 226
Query: 197 AVIKNRKELYTAELKEFQR 215
A++ +RK +Y ++ E QR
Sbjct: 227 AIVSDRKMIYEQKIAELQR 245
>pdb|3A7S|A Chain A, Catalytic Domain Of Uch37
Length = 228
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 140/187 (74%), Gaps = 8/187 (4%)
Query: 20 RPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINNACATQAILSILLNCP--DID 76
+PV+GLIFLFKW+PGE+ V++D +FFA QVINNA ATQAI+S+LLNC D+
Sbjct: 47 KPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNAAATQAIVSVLLNCTHQDVH 106
Query: 77 IGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHF 136
+G LS+ KEF+++F +KGLA++NSD IR HNSFAR + F + K + K++D +HF
Sbjct: 107 LGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMF-EFDTKTSAKEEDAFHF 165
Query: 137 ISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLM 196
+SY+PV+G LYELDGL+EGPI LG C DW+ V+PVI++RI++YS+ EIRFNLM
Sbjct: 166 VSYVPVNGRLYELDGLREGPIDLGACN----QDDWISAVRPVIEKRIQKYSEGEIRFNLM 221
Query: 197 AVIKNRK 203
A++ +RK
Sbjct: 222 AIVSDRK 228
>pdb|3TB3|A Chain A, Crystal Structure Of The Uch Domain Of Uch-L5 With 6
Residues Deleted
pdb|3TB3|B Chain B, Crystal Structure Of The Uch Domain Of Uch-L5 With 6
Residues Deleted
Length = 229
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 101/186 (54%), Positives = 139/186 (74%), Gaps = 8/186 (4%)
Query: 20 RPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINNACATQAILSILLNCP--DID 76
+PV+GLIFLFKW+PGE+ V++D +FFA QVINNA ATQAI+S+LLNC D+
Sbjct: 49 KPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNAAATQAIVSVLLNCTHQDVH 108
Query: 77 IGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHF 136
+G LS+ KEF+++F +KGLA++NSD IR HNSFAR + F + K + K++D +HF
Sbjct: 109 LGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMF-EFDTKTSAKEEDAFHF 167
Query: 137 ISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLM 196
+SY+PV+G LYELDGL+EGPI LG C DW+ V+PVI++RI++YS+ EIRFNLM
Sbjct: 168 VSYVPVNGRLYELDGLREGPIDLGACN----QDDWISAVRPVIEKRIQKYSEGEIRFNLM 223
Query: 197 AVIKNR 202
A++ +R
Sbjct: 224 AIVSDR 229
>pdb|3RII|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RII|B Chain B, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
Length = 233
Score = 210 bits (534), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 138/187 (73%), Gaps = 8/187 (4%)
Query: 20 RPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINNACATQAILSILLNCP--DID 76
+PV+GLIFLFKW+PGE+ V++D +FFA QVINNA ATQAI+S+LLNC D+
Sbjct: 52 KPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNASATQAIVSVLLNCTHQDVH 111
Query: 77 IGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHF 136
+G LS+ KEF+++F KGLA++NSD IR HNSFAR + F + K + K++D +HF
Sbjct: 112 LGETLSEFKEFSQSFDAAXKGLALSNSDVIRQVHNSFARQQXF-EFDTKTSAKEEDAFHF 170
Query: 137 ISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLM 196
+SY+PV+G LYELDGL+EGPI LG C DW+ V+PVI++RI++YS+ EIRFNL
Sbjct: 171 VSYVPVNGRLYELDGLREGPIDLGACN----QDDWISAVRPVIEKRIQKYSEGEIRFNLX 226
Query: 197 AVIKNRK 203
A++ +RK
Sbjct: 227 AIVSDRK 233
>pdb|1XD3|A Chain A, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1XD3|C Chain C, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1UCH|A Chain A, Deubiquitinating Enzyme Uch-L3 (Human) At 1.8 Angstrom
Resolution
Length = 230
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 22/191 (11%)
Query: 20 RPVYGLIFLF----KWRPGEKDDRVVIK----DPNPNLFFASQVINNACATQAILSILLN 71
RPV ++ LF K+ ++ IK D +++F Q I+NAC T ++ + N
Sbjct: 47 RPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIAN 106
Query: 72 CPD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAG 128
D + G L K E + + PE + + N DAIR H + A + +A
Sbjct: 107 NKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEG-----QTEAPS 161
Query: 129 KDDDV-YHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYS 187
D+ V HFI+ + VDG LYELDG K PI+ G + D L+ V ++ +ER
Sbjct: 162 IDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETS----DETLLEDAIEVCKKFMER-D 216
Query: 188 KSEIRFNLMAV 198
E+RFN +A+
Sbjct: 217 PDELRFNAIAL 227
>pdb|3IRT|A Chain A, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy-Te Hydrolase L1
pdb|3IRT|B Chain B, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy-Te Hydrolase L1
pdb|3KVF|A Chain A, Crystal Structure Of The I93m Mutant Of Ubiquitin Carboxy
Te Hydrolase L1 Bound To Ubiquitin Vinylmethylester
Length = 228
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Query: 46 NPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEF---TKNFPPELKGLAINN 102
+P ++F Q I N+C T ++ + N D + S LK+F T+ PE +
Sbjct: 81 SPKVYFMKQTIGNSCGTMGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEK 140
Query: 103 SDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPC 162
++AI+AAH++ V +E + D +HFI + VDG LYELDG P++
Sbjct: 141 NEAIQAAHDA-------VAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVN---- 189
Query: 163 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIK 200
G + L+ V +E ER + E+RF+ +A+ K
Sbjct: 190 HGASSEDTLLKDAAKVCREFTER-EQGEVRFSAVALCK 226
>pdb|2LEN|A Chain A, Solution Structure Of Uchl1 S18y Variant
Length = 231
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 43 KDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEF---TKNFPPELKGLA 99
++ +P ++F Q I N+C T ++ + N D + S LK+F T+ PE +
Sbjct: 73 QEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKC 132
Query: 100 INNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISL 159
++AI+AAH++ V +E + D +HFI + VDG LYELDG P++
Sbjct: 133 FEKNEAIQAAHDA-------VAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVN- 184
Query: 160 GPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIK 200
G + L+ V +E ER + E+RF+ +A+ K
Sbjct: 185 ---HGASSEDTLLKDAAKVCREFTER-EQGEVRFSAVALCK 221
>pdb|3IFW|A Chain A, Crystal Structure Of The S18y Variant Of Ubiquitin Carboxy
T Hydrolase L1 Bound To Ubiquitin Vinylmethylester
Length = 228
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 43 KDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEF---TKNFPPELKGLA 99
++ +P ++F Q I N+C T ++ + N D + S LK+F T+ PE +
Sbjct: 78 QEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKC 137
Query: 100 INNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISL 159
++AI+AAH++ V +E + D +HFI + VDG LYELDG P++
Sbjct: 138 FEKNEAIQAAHDA-------VAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVN- 189
Query: 160 GPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIK 200
G + L+ V +E ER + E+RF+ +A+ K
Sbjct: 190 ---HGASSEDTLLKDAAKVCREFTER-EQGEVRFSAVALCK 226
>pdb|2ETL|A Chain A, Crystal Structure Of Ubiquitin Carboxy-terminal Hydrolase
L1 (uch-l1)
pdb|2ETL|B Chain B, Crystal Structure Of Ubiquitin Carboxy-terminal Hydrolase
L1 (uch-l1)
pdb|3KW5|A Chain A, Crystal Structure Of Ubiquitin Carboxy Terminal Hydrolase
L1 Ubiquitin Vinylmethylester
pdb|4DM9|A Chain A, The Crystal Structure Of Ubiquitin Carboxy-Terminal
Hydrolase L1 (Uchl1) Bound To A Tripeptide Fluoromethyl
Ketone Z-Vae(Ome)-Fmk
pdb|4DM9|B Chain B, The Crystal Structure Of Ubiquitin Carboxy-Terminal
Hydrolase L1 (Uchl1) Bound To A Tripeptide Fluoromethyl
Ketone Z-Vae(Ome)-Fmk
Length = 228
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Query: 46 NPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEF---TKNFPPELKGLAINN 102
+P ++F Q I N+C T ++ + N D + S LK+F T+ PE +
Sbjct: 81 SPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEK 140
Query: 103 SDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPC 162
++AI+AAH++ V +E + D +HFI + VDG LYELDG P++
Sbjct: 141 NEAIQAAHDA-------VAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVN---- 189
Query: 163 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIK 200
G + L+ V +E ER + E+RF+ +A+ K
Sbjct: 190 HGASSEDTLLKDAAKVCREFTER-EQGEVRFSAVALCK 226
>pdb|2WDT|A Chain A, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WDT|C Chain C, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WE6|A Chain A, Crystal Structure Of Plasmodium Falciparum Ubiquitin
Carboxyl-Terminal Hydrolase 3 (Uchl3)
pdb|2WE6|B Chain B, Crystal Structure Of Plasmodium Falciparum Ubiquitin
Carboxyl-Terminal Hydrolase 3 (Uchl3)
Length = 232
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 24/193 (12%)
Query: 20 RPVYGLIFLFKWRPG-----EKDDRVVIKDPNPNLFFASQVINNACATQAILSI---LLN 71
+PV +IFL+ +D+ +K+ N++F Q I N+C T A+L + L N
Sbjct: 47 QPVQAVIFLYPVNDNIVSENNTNDKHNLKENFDNVWFIKQYIPNSCGTIALLHLYGNLRN 106
Query: 72 CPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDD 131
++D L E +G + N+ +I H+ F + +DD
Sbjct: 107 KFELDKDSVLDDFFNKVNEMSAEKRGQELKNNKSIENLHHEFC---------GQVENRDD 157
Query: 132 --DV-YHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSK 188
DV HFI ++ ++G + ELDG K+ P ++ T G ++L +IQ++ K
Sbjct: 158 ILDVDTHFIVFVQIEGKIIELDGRKDHP-TVHCFTNGD---NFLYDTGKIIQDKFIEKCK 213
Query: 189 SEIRFNLMAVIKN 201
++RF+ +AVI N
Sbjct: 214 DDLRFSALAVIPN 226
>pdb|1CMX|A Chain A, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1CMX|C Chain C, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
Length = 235
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 16/174 (9%)
Query: 20 RPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDI-DIG 78
RPV ++ LF K + ++ + Q + NAC AIL L N + + G
Sbjct: 50 RPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPG 109
Query: 79 PELSKLKEFTKNFPPELKGLAINNSD-----AIRAAHNSFARPEPFVPEEQKAAGKDDDV 133
+L + + +D I+ +F+ + PE D
Sbjct: 110 SDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATA-----DTN 164
Query: 134 YHFISYIPVDGVLYELDGLK-EGPISLGPCTGGQGDMDWLQMVQPVIQERIERY 186
H+I+Y+ +G ++ELDG GP+ LG D+ + Q +++ R+ Y
Sbjct: 165 LHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDL----IEQELVRVRVASY 214
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 145 VLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNR-- 202
+LYEL ++L GG+G L++ + V+Q R S + +NL IK++
Sbjct: 394 LLYELCAKAGAEVALSWAKGGEG---GLELARKVLQTLESRPSNFHVLYNLDLSIKDKIA 450
Query: 203 ---KELYTAELKEFQRKRERILQQLASL 227
E+Y A+ + + ++ +Q+ SL
Sbjct: 451 KIATEIYGADGVNYTAEADKAIQRYESL 478
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 145 VLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNR-- 202
+LYEL ++L GG+G L++ + V+Q R S + +NL IK++
Sbjct: 394 LLYELCAKAGAEVALSWAKGGEG---GLELARKVLQTLESRPSNFHVLYNLDLSIKDKIA 450
Query: 203 ---KELYTAELKEFQRKRERILQQLASL 227
E+Y A+ + + ++ +Q+ SL
Sbjct: 451 KIATEIYGADGVNYTAEADKAIQRYESL 478
>pdb|2DOS|A Chain A, Structural Basis For The Recognition Of Lys48-Linked
Polyubiquitin Chain By The Josephin Domain Of Ataxin-3,
A Putative Deubiquitinating Enzyme
Length = 176
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 36 KDDRVVIKDPNPNL----FFASQVINNACATQAILSILLNCPD 74
+D R ++ P+ N+ FF+ QVI+NA + IL N P+
Sbjct: 61 EDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPE 103
>pdb|2AGA|A Chain A, De-Ubiquitinating Function Of Ataxin-3: Insights From The
Solution Structure Of The Josephin Domain
Length = 190
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 36 KDDRVVIKDPNPNL----FFASQVINNACATQAILSILLNCPD 74
+D R ++ P+ N+ FF+ QVI+NA + IL N P+
Sbjct: 61 EDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPE 103
>pdb|2JRI|A Chain A, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|1YZB|A Chain A, Solution Structure Of The Josephin Domain Of Ataxin-3
Length = 182
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 36 KDDRVVIKDPNPNL----FFASQVINNACATQAILSILLNCPD 74
+D R ++ P+ N+ FF+ QVI+NA + IL N P+
Sbjct: 56 EDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPE 98
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 163 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 222
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 64 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 122
Query: 223 QLASLQSERMVDKTSFEA 240
L Q +++VDKT A
Sbjct: 123 NLKDTQLQQIVDKTIINA 140
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 163 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 222
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 63 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 121
Query: 223 QLASLQSERMVDKTSFEA 240
L Q +++VDKT A
Sbjct: 122 NLKDTQLQQIVDKTIINA 139
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 163 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 222
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 49 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 107
Query: 223 QLASLQSERMVDKTSFEA 240
L Q +++VDKT A
Sbjct: 108 NLKDTQLQQIVDKTIINA 125
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 163 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 222
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 50 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 108
Query: 223 QLASLQSERMVDKTSFEA 240
L Q +++VDKT A
Sbjct: 109 NLKDTQLQQIVDKTIINA 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,571,088
Number of Sequences: 62578
Number of extensions: 348185
Number of successful extensions: 961
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 32
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)