Query 021435
Match_columns 312
No_of_seqs 200 out of 669
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2778 Ubiquitin C-terminal h 100.0 6E-90 1.3E-94 634.9 22.7 290 1-309 23-316 (328)
2 PF01088 Peptidase_C12: Ubiqui 100.0 1.1E-62 2.3E-67 447.5 11.8 179 2-186 23-214 (214)
3 KOG1415 Ubiquitin C-terminal h 100.0 1.3E-58 2.9E-63 409.4 15.7 186 3-200 28-221 (222)
4 PF07888 CALCOCO1: Calcium bin 70.1 66 0.0014 33.8 11.9 74 130-224 86-159 (546)
5 PHA02744 hypothetical protein; 55.5 7.1 0.00015 31.1 1.5 12 132-143 5-16 (88)
6 PF10146 zf-C4H2: Zinc finger- 23.4 5.5E+02 0.012 23.9 8.6 53 243-295 53-106 (230)
7 CHL00044 rpl16 ribosomal prote 21.3 80 0.0017 27.0 2.5 22 131-152 88-109 (135)
8 PF09726 Macoilin: Transmembra 21.3 9.7E+02 0.021 26.0 11.1 52 244-295 546-603 (697)
9 PHA00447 lysozyme 21.2 84 0.0018 26.9 2.6 19 131-151 42-60 (142)
10 cd08065 MPN_eIF3h Mpr1p, Pad1p 20.7 3.1E+02 0.0067 25.7 6.6 25 253-277 227-255 (266)
No 1
>KOG2778 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-90 Score=634.87 Aligned_cols=290 Identities=65% Similarity=1.054 Sum_probs=253.9
Q ss_pred CCCEEEEeccCChhhhhccCCceEEEEEeecCCCCccccccccCCCCCccchhhhhhhhhHHHHHHHhhcCCC--CCCCC
Q 021435 1 MHMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCP--DIDIG 78 (312)
Q Consensus 1 ~gv~f~DVysLD~~~L~~~~Pv~alIfLFp~~~~~~~~~~~~~~~~~~v~FakQtI~NACgT~AlLh~l~N~~--~i~lg 78 (312)
.||||+||||||.+.+..++|||||||||+|.+++++......+.-++||||||+|+|||||+|||++|+|+. +|+||
T Consensus 23 ~gvQVEElysLd~~~~~~~~piyGlIFLFKW~~ed~~~g~v~~D~~~niFFA~QvInNACATqAlLsvLlN~~~~~idLG 102 (328)
T KOG2778|consen 23 KGVQVEELYSLDSDSLRPLRPIYGLIFLFKWIEEDKPAGSVIDDSVSNIFFAKQVINNACATQALLSVLLNCSHEDIDLG 102 (328)
T ss_pred CceeEeeeeccCcchhccCCCceeEEEEEEeccCCCCCcccccccccchhhhhhhcccHHHHHHHHHHHHcCCccccchh
Confidence 4899999999999999999999999999999987666655555544689999999999999999999999984 69999
Q ss_pred cchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCC--CCCCcceEEEEEeeCCeEEeecCCCCCC
Q 021435 79 PELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAG--KDDDVYHFISYIPVDGVLYELDGLKEGP 156 (312)
Q Consensus 79 s~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~--~~~~~~HFI~fV~~~G~lyELDGlk~gP 156 (312)
++|++||+||++|+|+.||.+|+|+++||.+|||||||..+.+.+..+.. .++++||||+|||++|+||||||+|.||
T Consensus 103 ~tLs~~K~f~k~f~Pe~KGlal~Nse~Ir~~HNSfARp~~~~~~e~~a~~~~~~dd~yHFVsyvPI~g~lyELDGLke~P 182 (328)
T KOG2778|consen 103 PTLSELKEFTKGFDPELKGLALGNSEEIRCAHNSFARPEPFRPEEVDAATSAKEDDVYHFVSYVPINGRLYELDGLKEGP 182 (328)
T ss_pred hHHHHHHHHhhcCChhhcccccCCcHHHHHHhccccCCCCcchhhhhcccccccccceeEEEEEeeCCEEEeccCCccCC
Confidence 99999999999999999999999999999999999999996654432222 2678999999999999999999999999
Q ss_pred cccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccch
Q 021435 157 ISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKT 236 (312)
Q Consensus 157 i~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~d~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 236 (312)
|+||+|.. +++|++.++|||++||++|++|+|||||||||+|++ ..+|..+++.++.++.++....
T Consensus 183 I~lg~~~~---eqeW~d~vrpVIqeRi~~ys~gEIrFNLMAvV~dRk---~a~l~~~~~~~e~l~~~l~~~~-------- 248 (328)
T KOG2778|consen 183 IDLGPCEK---EQEWLDKVRPVIQERIQRYSEGEIRFNLMAVVPDRK---TAELKELQRKREILLQQLQKQE-------- 248 (328)
T ss_pred cccCCCCc---cHhHHHHHHHHHHHHHhhCCcceeEEEEEEEeccch---HHHHHHHHHHHHHHHHHHHhhh--------
Confidence 99999986 269999999999999999999999999999999998 5566666777777776664311
Q ss_pred hhhHhhhhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHhcCCchHHHHHHHHhhc
Q 021435 237 SFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTS 309 (312)
Q Consensus 237 ~~~~~~~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~~lk~la~~g~L~~l~~~a~~~~~ 309 (312)
.....+.+.+|+.+++.|..|++|+.+|+.||+||||||.||+++++|.||++|+|.+++++|+.+..
T Consensus 249 -----~~~~~~~q~~ia~~~~~i~~e~~K~~~~k~en~rr~hny~pfl~ellk~lae~~~L~~~~~kak~~~~ 316 (328)
T KOG2778|consen 249 -----ATEADKEQSEIANLSSHIRPEDEKLKRYKKENIRRKHNYLPFLVELLKILAEEGQLAPLVEKAKPKSM 316 (328)
T ss_pred -----ccchhhhhhhhcccccccCcchhHhhhcchhhhhhhhcccHHHHHHHHHHhhhcchhhhhhhhcchhh
Confidence 01112256788888889999999999999999999999999999999999999999999999987654
No 2
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....
Probab=100.00 E-value=1.1e-62 Score=447.54 Aligned_cols=179 Identities=50% Similarity=0.869 Sum_probs=150.6
Q ss_pred CCEEEEeccCChh-hhhcc-CCceEEEEEeecCCCCcccc------cc--ccCCCCCccchhhhhhhhhHHHHHHHhhcC
Q 021435 2 HMQVEELYSLDLD-SLNNL-RPVYGLIFLFKWRPGEKDDR------VV--IKDPNPNLFFASQVINNACATQAILSILLN 71 (312)
Q Consensus 2 gv~f~DVysLD~~-~L~~~-~Pv~alIfLFp~~~~~~~~~------~~--~~~~~~~v~FakQtI~NACgT~AlLh~l~N 71 (312)
+|+|+||||||++ +|+++ +|||||||||||++..+..+ .. ....+++|||+||||+||||||||||+|+|
T Consensus 23 ~~~f~Dv~sld~~~lL~~ip~Pv~alI~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~kQti~NACgt~AlLh~l~N 102 (214)
T PF01088_consen 23 GVQFEDVYSLDDPELLAMIPRPVYALIFLFPWTEEYEERRAEEDAKIEEKGQDIPENVFFAKQTIGNACGTIALLHALLN 102 (214)
T ss_dssp SEEEEEESTSSHHHHHTTSSSSEEEEEEEEE--HHHHHHHHHHHHHHCCHSCTCGTTS-EES-SSBTGHHHHHHHHHHHT
T ss_pred eeEEEEcccccchHhhhhcCccceeEEEEEecchhhhhhhccccccccccccCCCCCceEeeecCCchhhHHHHHHHHhc
Confidence 6899999999995 58999 99999999999996422211 11 123456899999999999999999999999
Q ss_pred CCC---CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEe
Q 021435 72 CPD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYE 148 (312)
Q Consensus 72 ~~~---i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyE 148 (312)
+++ |.+||.|++|+++|.+|+|++||.+|++++.|+++||+||++|++..+. ...+++++||||||||++|+|||
T Consensus 103 ~~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~l~~~~~l~~aH~s~A~~g~t~~~~--~~~~~~~~~HFI~fV~~~G~LyE 180 (214)
T PF01088_consen 103 NPDRIEIEPGSILDQFKEFTKDLSPEERGKALENSKELRKAHNSFARQGQTEAPD--DEADDEVDFHFIAFVPVDGHLYE 180 (214)
T ss_dssp CCCTTCBBTTSHHHHHHHHHTTSTHHHHHHHHHTHHHHHHHHHHHHCHCSSTS-H----TTSCGCEEEEEEEEETTEEEE
T ss_pred ccccccccCCchHHHHHHHHhcCCHHHHHHHHhCcHHHHHHHHHHhccCCcCCCc--cccCCCCCccEEEEEeECCeEEE
Confidence 986 8889999999999999999999999999999999999999999865321 11356678999999999999999
Q ss_pred ecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhc
Q 021435 149 LDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERY 186 (312)
Q Consensus 149 LDGlk~gPi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~ 186 (312)
|||||+|||+||++++ ++|+++|+++||+||++|
T Consensus 181 LDG~k~~Pi~~G~~~~----~~~l~~a~~vik~~m~~y 214 (214)
T PF01088_consen 181 LDGRKSGPIDHGPCSD----EDWLSDARPVIKERMERY 214 (214)
T ss_dssp EETTSSS-EEEEE-BT----TSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCeEcCcCCC----ccHHHHHHHHHHHHHhcC
Confidence 9999999999999985 899999999999999997
No 3
>KOG1415 consensus Ubiquitin C-terminal hydrolase UCHL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-58 Score=409.36 Aligned_cols=186 Identities=35% Similarity=0.536 Sum_probs=167.0
Q ss_pred CEEEEeccCChhhhhcc-CCceEEEEEeecCCCCcccccc----ccCCCCCccchhhhhhhhhHHHHHHHhhcCCCC---
Q 021435 3 MQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRVV----IKDPNPNLFFASQVINNACATQAILSILLNCPD--- 74 (312)
Q Consensus 3 v~f~DVysLD~~~L~~~-~Pv~alIfLFp~~~~~~~~~~~----~~~~~~~v~FakQtI~NACgT~AlLh~l~N~~~--- 74 (312)
|+|.||||||++.|+++ |||+|||||||+++..+..+.. .++.+++||||||||+|||||+||||+|+|+.+
T Consensus 28 ~~~~DVy~ldee~L~~vPrPv~A~lllFP~~e~~e~~~~~~~e~~k~~~~~V~fmkQti~NACGTiaLlHslaN~~~r~~ 107 (222)
T KOG1415|consen 28 WSVVDVYGLDEESLEFVPRPVKALLLLFPITEKREEFRKEQIEEIKEQSDKVFFMKQTIGNACGTIALLHSLANNEDRVK 107 (222)
T ss_pred eEEEEeeecChhhhhhcCccceEEEEEecccchhhHhhhhhHhhhhcCCCceEEEeccccchhHHHHHHHHHhccccccc
Confidence 89999999999999999 9999999999998754432211 123356899999999999999999999999987
Q ss_pred CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeecCCCC
Q 021435 75 IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKE 154 (312)
Q Consensus 75 i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELDGlk~ 154 (312)
+..||.|++|++.+.+|+|++|+++|+++++|+.+|..+|..|++. .++++++||||||.+||+|||||||++
T Consensus 108 l~~Gs~l~~fl~~~~~~s~eeRa~~le~d~~l~~~H~a~a~eGqte-------~~~~vd~HFI~~v~~~G~lYELDgR~~ 180 (222)
T KOG1415|consen 108 LEDGSFLKKFLEEAEKMSPEERADLLENDEELEAAHEAAAQEGQTE-------ADEDVDLHFICFVNKNGHLYELDGRKP 180 (222)
T ss_pred cCCchHHHHHHHHhhcCCHHHHHHHhcccHHHHHHHHHHHhcCCCC-------CccccceEEEEEEccCCeEEEecCCcC
Confidence 5568999999999999999999999999999999999999999863 235678999999999999999999999
Q ss_pred CCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeec
Q 021435 155 GPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIK 200 (312)
Q Consensus 155 gPi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~ 200 (312)
|||.||++++ +.++.+|.++|+++|++ .+++++||+|||++
T Consensus 181 fPi~hG~ts~----~tl~kda~~v~k~~~~~-~~nel~Fs~iAl~~ 221 (222)
T KOG1415|consen 181 FPINHGPTSD----DTLLKDAAKVCKEFIER-NPNELRFSAIALTK 221 (222)
T ss_pred CCccCCCCch----HHHHHHHHHHHHHHHHc-CCCccceEEEEecC
Confidence 9999999986 78999999999999999 57889999999986
No 4
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=70.05 E-value=66 Score=33.78 Aligned_cols=74 Identities=20% Similarity=0.416 Sum_probs=38.9
Q ss_pred CCCcceEEEEEeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCchHHHHHH
Q 021435 130 DDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAE 209 (312)
Q Consensus 130 ~~~~~HFI~fV~~~G~lyELDGlk~gPi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~d~~~~~~~~ 209 (312)
++.-|.| |||-..|.|.= ...|...++..+ .+.++. ++. .+..--++-|++. ...++.+
T Consensus 86 ~~e~Yqf-cYv~~~g~V~G----~S~pFqf~~~~p---~eeLvt---------le~---e~~~~DmLvV~~k-a~~lQ~q 144 (546)
T PF07888_consen 86 DDEFYQF-CYVDQKGEVRG----ASTPFQFRAPKP---LEELVT---------LED---EDGNSDMLVVTTK-AQLLQNQ 144 (546)
T ss_pred CCCeEEE-EEECCCccEEE----ecCCcccCCCCc---ccccee---------ecc---cCCCcceEEEehh-HHHHHHH
Confidence 4456888 99999898763 345666665444 122221 011 1111223444433 4556777
Q ss_pred HHHHHHHHHHHHHHH
Q 021435 210 LKEFQRKRERILQQL 224 (312)
Q Consensus 210 l~~~~~~~~~l~~~~ 224 (312)
++...+.++.|....
T Consensus 145 lE~~qkE~eeL~~~~ 159 (546)
T PF07888_consen 145 LEECQKEKEELLKEN 159 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776666555554433
No 5
>PHA02744 hypothetical protein; Provisional
Probab=55.53 E-value=7.1 Score=31.14 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=10.0
Q ss_pred CcceEEEEEeeC
Q 021435 132 DVYHFISYIPVD 143 (312)
Q Consensus 132 ~~~HFI~fV~~~ 143 (312)
.-||||||||..
T Consensus 5 ~~~~y~CiVPkE 16 (88)
T PHA02744 5 GKYHYICIAPKE 16 (88)
T ss_pred CceeEEEEecHH
Confidence 359999999965
No 6
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.37 E-value=5.5e+02 Score=23.88 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=32.7
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHh-cC
Q 021435 243 KSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAE-KK 295 (312)
Q Consensus 243 ~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~~lk~la~-~g 295 (312)
+.|..+..+|..+...|..-...+.+-.....|.-..|.|+-.+.=+++.+ -|
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLG 106 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344556777777777776555444444444455566788877666666655 44
No 7
>CHL00044 rpl16 ribosomal protein L16
Probab=21.28 E-value=80 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.4
Q ss_pred CCcceEEEEEeeCCeEEeecCC
Q 021435 131 DDVYHFISYIPVDGVLYELDGL 152 (312)
Q Consensus 131 ~~~~HFI~fV~~~G~lyELDGl 152 (312)
....|+||.|+.+--|+|++|.
T Consensus 88 G~~~~~va~V~~G~ilfEi~g~ 109 (135)
T CHL00044 88 GSPEYWVAVVKPGRILYEMGGV 109 (135)
T ss_pred CCccEEEEEECCCcEEEEEeCC
Confidence 3468999999999999999984
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.26 E-value=9.7e+02 Score=26.03 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=29.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHhhhHHHHh-ccc-----CCcHHHHHHHHHHHHhcC
Q 021435 244 SLSEVNAGIEGATEKILMEEEKFKKWRTENI-RRK-----HNYIPFLFNFLKILAEKK 295 (312)
Q Consensus 244 ~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~-rRr-----hny~pfi~~~lk~la~~g 295 (312)
-..+++.++..|+..+..-++....+..|.. .|. +.=.-.++..|..|-+|.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~ 603 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKN 603 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3345666777777766555555555555541 221 334556666666665554
No 9
>PHA00447 lysozyme
Probab=21.15 E-value=84 Score=26.86 Aligned_cols=19 Identities=47% Similarity=0.564 Sum_probs=15.1
Q ss_pred CCcceEEEEEeeCCeEEeecC
Q 021435 131 DDVYHFISYIPVDGVLYELDG 151 (312)
Q Consensus 131 ~~~~HFI~fV~~~G~lyELDG 151 (312)
+..|||+ |..||.|||.-|
T Consensus 42 dIgYhf~--I~~dG~I~eGR~ 60 (142)
T PHA00447 42 DVGYHFI--IRRDGTVEEGRP 60 (142)
T ss_pred CcCeEEE--ECCCCEEEECCC
Confidence 4689994 678999999544
No 10
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=20.67 E-value=3.1e+02 Score=25.72 Aligned_cols=25 Identities=16% Similarity=0.484 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhh----HHHHhccc
Q 021435 253 EGATEKILMEEEKFKKW----RTENIRRK 277 (312)
Q Consensus 253 ~~~~~~i~~E~~k~~~~----~~En~rRr 277 (312)
...+..+..|..+..+| +.||+.|+
T Consensus 227 ~~y~r~~~~~~~~~~~~~~kr~~en~~r~ 255 (266)
T cd08065 227 NYYQRNLARQQAQIQQWLQKRKAENAQRE 255 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34567777777777666 56786554
Done!