Query 021435
Match_columns 312
No_of_seqs 200 out of 669
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihr_A Ubiquitin carboxyl-term 100.0 2.4E-91 8.1E-96 666.2 22.7 291 2-311 29-322 (328)
2 3rii_A Ubiquitin carboxyl-term 100.0 1.7E-71 5.8E-76 509.0 17.5 197 2-203 34-233 (233)
3 1xd3_A Ubiquitin carboxyl-term 100.0 2.7E-69 9.3E-74 493.7 16.0 190 3-201 29-230 (230)
4 4dm9_A Ubiquitin carboxyl-term 100.0 1.3E-68 4.3E-73 488.6 16.8 188 3-202 31-228 (228)
5 2wdt_A Ubiquitin carboxyl-term 100.0 2.9E-67 9.9E-72 480.7 13.6 191 2-203 28-228 (232)
6 1cmx_A Protein (ubiquitin YUH1 100.0 2.6E-67 8.8E-72 481.2 10.9 194 2-201 30-234 (235)
7 1slq_A VP4; beta sandwich, gre 39.3 39 0.0013 30.5 5.1 35 190-224 218-265 (278)
8 3hnw_A Uncharacterized protein 25.0 2.8E+02 0.0094 22.5 9.4 34 140-187 12-45 (138)
9 1yck_A Peptidoglycan recogniti 22.5 36 0.0012 28.6 1.9 17 131-149 71-87 (175)
10 2f2l_A Peptidoglycan-recogniti 19.2 43 0.0015 28.0 1.7 16 131-148 62-77 (167)
No 1
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-91 Score=666.24 Aligned_cols=291 Identities=50% Similarity=0.895 Sum_probs=232.0
Q ss_pred CCEEEEeccCChhhhhccCCceEEEEEeecCCCCcccccccc-CCCCCccchhhhhhhhhHHHHHHHhhcCCC--CCCCC
Q 021435 2 HMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIK-DPNPNLFFASQVINNACATQAILSILLNCP--DIDIG 78 (312)
Q Consensus 2 gv~f~DVysLD~~~L~~~~Pv~alIfLFp~~~~~~~~~~~~~-~~~~~v~FakQtI~NACgT~AlLh~l~N~~--~i~lg 78 (312)
||+|+||||||+++|++++|||||||||||++..+....... ...++|||+||||+||||||||||+|+|++ .|.+|
T Consensus 29 ~~~f~DVysLD~e~L~~l~Pv~alIfLFp~~~~~e~~~~~~~~~~~~~v~f~kQtI~NACGT~ALLh~l~N~~~~~I~~G 108 (328)
T 3ihr_A 29 GAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLG 108 (328)
T ss_dssp SEEEEECCCCCHHHHHTTCSEEEEEEEEECCSCCCCSSEECCSTTTTTSCCCCCCSGGGHHHHHHHHHHHTCCCTTCBCH
T ss_pred ceEEEEeccCCHHHHhcccCceEEEEEEecCchhhhcccccccCcccccchHHHhccchHHHHHHHHHHHcCCcccCCCC
Confidence 579999999999999999999999999999875443322222 223579999999999999999999999986 49999
Q ss_pred cchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeecCCCCCCcc
Q 021435 79 PELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPIS 158 (312)
Q Consensus 79 s~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELDGlk~gPi~ 158 (312)
|.|++|+++|.+|+|++||.+|+|++.|+.+|||||++|++..+ ++++.+++++||||||||+||+||||||||+|||+
T Consensus 109 s~L~~f~~~t~~l~P~~Rg~~L~ns~~i~~aHns~A~~g~~~~d-t~~~~~d~~~~HFIafV~~dG~LyELDG~k~gPI~ 187 (328)
T 3ihr_A 109 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD-TKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPID 187 (328)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHTTC------------------CEEEEEEEEETTEEEEEETTSSSCEE
T ss_pred cHHHHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhccCCccCC-CCCCCCcCcceeEEEEEeeCCEEEEcCCCCCCCcc
Confidence 99999999999999999999999999999999999999966432 23344566789999999999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhh
Q 021435 159 LGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSF 238 (312)
Q Consensus 159 ~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~d~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 238 (312)
||+|++ ++||++|+++|++||++|++++++|||||||+|++..|+++|+.+++.+. . .. ...
T Consensus 188 hG~~~~----e~~l~~a~~vi~~ri~~y~~~eirFslmAL~~d~~~~~~~~l~~l~~~~~-------~---~~----~~~ 249 (328)
T 3ihr_A 188 LGACNQ----DDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLA-------E---EP----MDT 249 (328)
T ss_dssp EEECBT----TBCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHH-------H---SC----CCC
T ss_pred cCCCCc----hhHHHHHHHHHHHHHHhcCCCCceEEEEEecCChHHHHHHHHHHHHhhhh-------c---cc----ccc
Confidence 999985 79999999999999999988899999999999999999999998854211 0 00 011
Q ss_pred hHhhhhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHhcCCchHHHHHHHHhhccC
Q 021435 239 EALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSS 311 (312)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~~lk~la~~g~L~~l~~~a~~~~~~~ 311 (312)
+.....+.+++.+|..+++.|++|++||++|+.||+||||||+|||+++||.||++|+|++|+++|++|++++
T Consensus 250 ~~~~~~~~~~~~ei~~~~~~l~~E~~kr~~w~~En~rRrhny~pfi~~llk~la~~~~l~~~~e~ak~~~~~~ 322 (328)
T 3ihr_A 250 DQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAK 322 (328)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSSTTTTTC-----------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1223456778999999999999999999999999999999999999999999999999999999999887653
No 2
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=100.00 E-value=1.7e-71 Score=509.00 Aligned_cols=197 Identities=55% Similarity=1.011 Sum_probs=169.1
Q ss_pred CCEEEEeccCChhhhhccCCceEEEEEeecCCCCccccccccC-CCCCccchhhhhhhhhHHHHHHHhhcCCC--CCCCC
Q 021435 2 HMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKD-PNPNLFFASQVINNACATQAILSILLNCP--DIDIG 78 (312)
Q Consensus 2 gv~f~DVysLD~~~L~~~~Pv~alIfLFp~~~~~~~~~~~~~~-~~~~v~FakQtI~NACgT~AlLh~l~N~~--~i~lg 78 (312)
||+|+||||||+++|+++||||||||||||++..+.......+ .+++|||+||||+||||||||||+|+|++ .|++|
T Consensus 34 ~~~f~DVysLD~~~L~~l~Pv~alIfLFp~~~~~~~~~~~~~~~~~~~v~f~kQtI~NACgT~ALLh~l~N~~~~~i~~g 113 (233)
T 3rii_A 34 GAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNASATQAIVSVLLNCTHQDVHLG 113 (233)
T ss_dssp SEEEEECSCSSTTTTTTTCSEEEEEEEECCCTTCCCSSEECCSGGGGTSCCCCCCCGGGHHHHHHHHHHHTCCCTTCBCC
T ss_pred CcEEEEcccCCHHHHhhccCceEEEEEEeccchhhhccCccccCCcccceEeehhccccHHHHHHHHHHHcCCcccccCC
Confidence 5899999999999999999999999999998754433222111 22479999999999999999999999987 59999
Q ss_pred cchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeecCCCCCCcc
Q 021435 79 PELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPIS 158 (312)
Q Consensus 79 s~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELDGlk~gPi~ 158 (312)
|.|++|+++|++|+|++||++|+|++.|+.+||+||++|++..+ ++++.+++++||||||||+||+||||||||+|||+
T Consensus 114 s~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aH~s~A~~g~~~~d-t~~~~~~~~~~HFIafV~~dG~LyELDG~k~gPi~ 192 (233)
T 3rii_A 114 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD-TKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPID 192 (233)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHTSCC-----------CCGGGGSEEEEEEEETTEEEEECTTSSSCEE
T ss_pred cHHHHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhhcCCccCC-CCCCCccCcceeEEEEEEeCCeEEEcCCCCCCCcc
Confidence 99999999999999999999999999999999999999987543 23344566789999999999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCch
Q 021435 159 LGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRK 203 (312)
Q Consensus 159 ~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~d~~ 203 (312)
||++++ ++||++|+++|++||++|+++++||||||||+|++
T Consensus 193 ~G~~~~----e~~l~~a~~vi~~ri~~~~~~ei~FslmAL~~d~~ 233 (233)
T 3rii_A 193 LGACNQ----DDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK 233 (233)
T ss_dssp EEECCS----SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEECC-
T ss_pred cCCCCc----hhHHHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCC
Confidence 999975 79999999999999999988899999999999973
No 3
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=100.00 E-value=2.7e-69 Score=493.71 Aligned_cols=190 Identities=31% Similarity=0.452 Sum_probs=168.9
Q ss_pred CEEEEeccCChhhhhcc-CCceEEEEEeecCCCCccccc--------cccCCCCCccchhhhhhhhhHHHHHHHhhcCCC
Q 021435 3 MQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRV--------VIKDPNPNLFFASQVINNACATQAILSILLNCP 73 (312)
Q Consensus 3 v~f~DVysLD~~~L~~~-~Pv~alIfLFp~~~~~~~~~~--------~~~~~~~~v~FakQtI~NACgT~AlLh~l~N~~ 73 (312)
|+|+||||||+++|+++ +|||||||||||++..+..+. ...+.+++|||+||||+||||||||||+|+|++
T Consensus 29 ~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~~~~~~~~~~~~~~v~f~kQtI~NACgT~AlLh~l~N~~ 108 (230)
T 1xd3_A 29 WQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNK 108 (230)
T ss_dssp EEEEECCCSSHHHHTTSCSCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCTTCCCCCCCSBTCHHHHHHHHHHHTTG
T ss_pred EEEEEeccCCHHHHhhCCCCceEEEEEEECChhhhhhhhhhhcccccccCCCCcCcEEeehhccccHHHHHHHHHHHcCc
Confidence 89999999999999999 999999999999874332211 122344679999999999999999999999998
Q ss_pred C-CCC--CcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeec
Q 021435 74 D-IDI--GPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELD 150 (312)
Q Consensus 74 ~-i~l--gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELD 150 (312)
+ |.+ ||.|++|+++|.+|+|++||.+|+|++.|+.+||+||++|++.. +..+++++||||||||+||+|||||
T Consensus 109 ~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~~----p~~~~~~~~HFI~fV~~~G~LyELD 184 (230)
T 1xd3_A 109 DKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEA----PSIDEKVDLHFIALVHVDGHLYELD 184 (230)
T ss_dssp GGCCBCTTCHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHHHHTCSSSCC----CCTTSCCCEEEEEEEEETTEEEEEC
T ss_pred CCcccCCCchHHHHHHHccCCCHHHHHHHhcCcHHHHHHHHHHhccCCCCC----CCCCCCcCeEEEEEEeeCCEEEEcc
Confidence 6 666 99999999999999999999999999999999999999999742 1234567899999999999999999
Q ss_pred CCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecC
Q 021435 151 GLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKN 201 (312)
Q Consensus 151 Glk~gPi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~d 201 (312)
|||+|||+||+|++ ++||++|+++|++||++| +++++|||||||++
T Consensus 185 G~k~gPi~~G~~~~----~~~l~~a~~vi~~~~~~~-~~~i~FslmAl~~~ 230 (230)
T 1xd3_A 185 GRKPFPINHGETSD----ETLLEDAIEVCKKFMERD-PDELRFNAIALSAA 230 (230)
T ss_dssp TTSSSCEEEEECCT----TTHHHHHHHHHHHHHHHS-TTCCCCEEEEEEEC
T ss_pred CCCCCCeecCCCCc----HhHHHHHHHHHHHHHHhC-CCCceEEEEEEecC
Confidence 99999999999986 789999999999999997 57999999999975
No 4
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=100.00 E-value=1.3e-68 Score=488.57 Aligned_cols=188 Identities=28% Similarity=0.460 Sum_probs=169.0
Q ss_pred CEEEEeccCChhhhhcc-CCceEEEEEeecCCCCccccc------cccCCCCCccchhhhhhhhhHHHHHHHhhcCCCC-
Q 021435 3 MQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRV------VIKDPNPNLFFASQVINNACATQAILSILLNCPD- 74 (312)
Q Consensus 3 v~f~DVysLD~~~L~~~-~Pv~alIfLFp~~~~~~~~~~------~~~~~~~~v~FakQtI~NACgT~AlLh~l~N~~~- 74 (312)
|+|+||||||+++|+++ ||||||||||||++..+..+. ...+.+++|||+||||+||||||||||+|+|+++
T Consensus 31 ~~f~DVysLD~dlL~~lP~Pv~alIfLFP~~~~~e~~r~~~~~~~~~~~~~~~v~f~kQtI~NACgt~ALLh~l~N~~~~ 110 (228)
T 4dm9_A 31 WRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDK 110 (228)
T ss_dssp EEEEEECCSSHHHHHTSCSCEEEEEEEEECCHHHHHHHHHHHHHHTTTTSCTTSCCCCCCSTTCHHHHHHHHHHHTTTTT
T ss_pred eEEEEeecCCHHHHhhCCCCceEEEEEecccchhhhhhhhhhccccccCCCcccEEeeeeccccHHHHHHHHHHhcCccc
Confidence 89999999999999999 999999999999875432211 1223456799999999999999999999999876
Q ss_pred CC--CCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeecCC
Q 021435 75 ID--IGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGL 152 (312)
Q Consensus 75 i~--lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELDGl 152 (312)
|. +||.|++|+++|++|+|++||++|+|++.|+.+||+||++|++. .+++++|||||||++||+|||||||
T Consensus 111 i~i~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~-------~~~~~~~HFIafV~~dG~LyELDG~ 183 (228)
T 4dm9_A 111 LGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR-------VDDKVNFHFILFNNVDGHLYELDGR 183 (228)
T ss_dssp CCBCTTCHHHHHHHHTTTSCHHHHHHHHHTCHHHHHHHHHHHTTSSCC-------CCTTCCEEEEEEEEETTEEEEECTT
T ss_pred cccCCCcHHHHHHHHhccCCHHHHHHHHhcCHHHHHHHHHHhccCCCC-------CCCCCCceEEEEEEeCCeEEEcCCC
Confidence 55 99999999999999999999999999999999999999999863 3456789999999999999999999
Q ss_pred CCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCc
Q 021435 153 KEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNR 202 (312)
Q Consensus 153 k~gPi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~d~ 202 (312)
|+|||+||++++ ++|+++|+++|++||++ .+++++|||||||+|+
T Consensus 184 k~gPi~~G~~~~----~~~l~~a~~vi~~~m~~-~~~ei~FslmAL~~~~ 228 (228)
T 4dm9_A 184 MPFPVNHGASSE----DTLLKDAAKVCREFTER-EQGEVRFSAVALCKAA 228 (228)
T ss_dssp SSSCEEEEECCG----GGHHHHHHHHHHHHHHH-SCSCCCCEEEEEEECC
T ss_pred CCCCceeccCCc----hhHHHHHHHHHHHHHHc-CCCCceEEEEEEecCC
Confidence 999999999986 79999999999999998 5789999999999985
No 5
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=100.00 E-value=2.9e-67 Score=480.71 Aligned_cols=191 Identities=26% Similarity=0.437 Sum_probs=161.8
Q ss_pred CCEEEEeccCChhhhhcc-CCceEEEEEeecCCCCccccc---c--ccCCCCCccchhhhhhhhhHHHHHHHhhcCCCC-
Q 021435 2 HMQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRV---V--IKDPNPNLFFASQVINNACATQAILSILLNCPD- 74 (312)
Q Consensus 2 gv~f~DVysLD~~~L~~~-~Pv~alIfLFp~~~~~~~~~~---~--~~~~~~~v~FakQtI~NACgT~AlLh~l~N~~~- 74 (312)
||+|+||||||+++|+++ +|||||||||||++..+.... . ..+.+++|||+||||+||||||||||+|+|+++
T Consensus 28 ~~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~~~~~~~~~~~~~~~~v~f~kQtI~NACgT~AlLh~l~N~~~~ 107 (232)
T 2wdt_A 28 KLKFVDIYGFNNDLLDMIPQPVQAVIFLYPVNDNIVSENNTNDKHNLKENFDNVWFIKQYIPNSCGTIALLHLYGNLRNK 107 (232)
T ss_dssp SEEEEECCCSSHHHHTTSCSCCCEEEEEEECC------------------CTTSCCCCCCSTTCHHHHHHHHHHHHSTTT
T ss_pred CeEEEEcccCCHHHHhhCCCCceEEEEEEECCcccchhhccccccccccCCCCcEEeeeccccchHHHHHHHHHhcCccc
Confidence 579999999999999999 999999999999975433211 0 112345799999999999999999999999865
Q ss_pred C--CCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeecCC
Q 021435 75 I--DIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGL 152 (312)
Q Consensus 75 i--~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELDGl 152 (312)
+ .+||.|++|+++|.+|+|++||++|+|++.|+.+||+| +|++..+ ..+++++||||||||+||+|||||||
T Consensus 108 i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~--~g~t~~p----~~~~~v~~HFI~fV~~~G~LyELDG~ 181 (232)
T 2wdt_A 108 FELDKDSVLDDFFNKVNEMSAEKRGQELKNNKSIENLHHEF--CGQVENR----DDILDVDTHFIVFVQIEGKIIELDGR 181 (232)
T ss_dssp SCCCTTSHHHHHHHHTTTSCHHHHHHHHHHCHHHHHHHTTS--SCCCCSH----HHHHCCCEEEEEEEESSSEEEEECTT
T ss_pred cccCCChHHHHHHHHccCCCHHHHHHHhhccHHHHHHHHhc--cCccCCC----CCCCCCCeEEEEEEEeCCEEEEccCC
Confidence 5 77999999999999999999999999999999999999 6765321 12345679999999999999999999
Q ss_pred CCCCcccCCCCCCCCcccHHHHHHHHH-HHHHHhccCCCceeEEEEeecCch
Q 021435 153 KEGPISLGPCTGGQGDMDWLQMVQPVI-QERIERYSKSEIRFNLMAVIKNRK 203 (312)
Q Consensus 153 k~gPi~~G~~~~~~~~~~~l~~a~~vi-~~ri~~~~~~~i~FslmAL~~d~~ 203 (312)
|+|||+||+|++ ++|+++|+++| ++||++| ++++||||||||++..
T Consensus 182 k~gPi~~G~~~~----~~~l~~a~~vi~~~~m~~~-~~~i~FslmAl~~~~~ 228 (232)
T 2wdt_A 182 KDHPTVHCFTNG----DNFLYDTGKIIQDKFIEKC-KDDLRFSALAVIPNDN 228 (232)
T ss_dssp SSSCEEEEECCG----GGHHHHHHHHHHHHTTTTC-SSCCCCEEEEEEEC--
T ss_pred CCCCcccCCCCc----HhHHHHHHHHHHHHHHHhC-CCCceEEEEEEeeCCc
Confidence 999999999986 79999999999 9999998 7899999999999863
No 6
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=100.00 E-value=2.6e-67 Score=481.23 Aligned_cols=194 Identities=21% Similarity=0.345 Sum_probs=164.1
Q ss_pred CCEEEEeccCCh-hhhhcc-CCceEEEEEeecCCCCccccccccCCCCCccchhhhhhhhhHHHHHHHhhcCCC-CCCCC
Q 021435 2 HMQVEELYSLDL-DSLNNL-RPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCP-DIDIG 78 (312)
Q Consensus 2 gv~f~DVysLD~-~~L~~~-~Pv~alIfLFp~~~~~~~~~~~~~~~~~~v~FakQtI~NACgT~AlLh~l~N~~-~i~lg 78 (312)
||+|+||||||+ ++|+++ +|||||||||||++..+..+......+++|||+||||+||||||||||+|+|+. .|.+|
T Consensus 30 ~~~f~DVysLdd~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~~~~~~v~f~kQtI~NACgT~AlLh~l~N~~~~i~~g 109 (235)
T 1cmx_A 30 EWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPG 109 (235)
T ss_dssp TEEEEEECCSSCTTGGGSSCSSCCEEEEEEECC---------------CCCEECCCSBTCHHHHHHHHHHHTCGGGBCTT
T ss_pred CcEEEEcccCCCHHHHhcCCCCcEEEEEEEeCCcccccccccccccccCcEeehhhhcccHHHHHHHHHHhccCccCCCC
Confidence 689999999955 899999 999999999999986544433222234579999999999999999999999983 58999
Q ss_pred cchHHHHHHhcCCChhhHHh--hhcCCHHHHHHHH--hcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeecCCC-
Q 021435 79 PELSKLKEFTKNFPPELKGL--AINNSDAIRAAHN--SFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLK- 153 (312)
Q Consensus 79 s~L~~f~~~t~~~~p~~Rg~--~L~ns~~i~~~Hn--s~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELDGlk- 153 (312)
|.|++|+++|.+|+|++||. +|+|++.|+.+|| +||++|++.. +..+++++|||||||++||+||||||||
T Consensus 110 s~L~~f~~~t~~~~p~~Rg~~~~L~n~~~i~~aHn~~s~A~~g~t~~----p~~~~~~~~HFI~fV~~~G~LyELDG~k~ 185 (235)
T 1cmx_A 110 SDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEA----PEATADTNLHYITYVEENGGIFELDGRNL 185 (235)
T ss_dssp SHHHHHHHHHHHHTSCSSEECSHHHHHHHHHHHHTCHHHHHCSSSCC----CCTTSCCSEEEEEEEECSSEEEEECTTCT
T ss_pred cHHHHHHHHhcCCCHHHhcchhhccccHHHHHHhChhhhhcccCCCC----CCCCCCCCeEEEEEEeeCCEEEEecCCCC
Confidence 99999999999999999999 9999999999999 9999999743 1234567899999999999999999999
Q ss_pred CCCcccCCCCCCCCcccHHH-HHHHH-HHHHHHhccC-CCceeEEEEeecC
Q 021435 154 EGPISLGPCTGGQGDMDWLQ-MVQPV-IQERIERYSK-SEIRFNLMAVIKN 201 (312)
Q Consensus 154 ~gPi~~G~~~~~~~~~~~l~-~a~~v-i~~ri~~~~~-~~i~FslmAL~~d 201 (312)
+|||+||+|++ ++++||+ +|+++ |++||++|.+ ++++|||||||++
T Consensus 186 ~gPi~~G~~~~--~~~~~l~~~a~~v~i~~~m~~~~~~~~i~FslmAL~~~ 234 (235)
T 1cmx_A 186 SGPLYLGKSDP--TATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPN 234 (235)
T ss_dssp TCCEEEEECCT--TCSSGGGCHHHHHHHHHHHHHHHHHTCCCCEEEEEEEC
T ss_pred CCCeEccCCCC--CcchhhHHHHHHHHHHHHHHhccccCCceEEEEEEecC
Confidence 99999999982 1278999 99999 9999999965 6999999999987
No 7
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=39.34 E-value=39 Score=30.46 Aligned_cols=35 Identities=17% Similarity=0.375 Sum_probs=27.4
Q ss_pred CceeEEEEeecCc-------------hHHHHHHHHHHHHHHHHHHHHH
Q 021435 190 EIRFNLMAVIKNR-------------KELYTAELKEFQRKRERILQQL 224 (312)
Q Consensus 190 ~i~FslmAL~~d~-------------~~~~~~~l~~~~~~~~~l~~~~ 224 (312)
.-|||++.|+|.. ++.++++|.+|+..-+.|.+.+
T Consensus 218 ~GrfslISLvPsNd~YQTPI~nSvTVRqDLerql~~LR~eFN~Lsq~i 265 (278)
T 1slq_A 218 AGRFSLISLVPSNDDYQTPITNSVTVRQDLERQLGELREEFNALSQEI 265 (278)
T ss_dssp EEEEEEEEEEESCCCCCCCCBCCEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEEecCCCcccCccccchhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 3689999999963 5789999998887777666554
No 8
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.00 E-value=2.8e+02 Score=22.50 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=24.2
Q ss_pred EeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhcc
Q 021435 140 IPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYS 187 (312)
Q Consensus 140 V~~~G~lyELDGlk~gPi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~ 187 (312)
|.++|+-|-|=| + . +++.|..++..+-++|....
T Consensus 12 V~I~Gk~Y~i~g---------~-e----~ee~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 12 VILGGKVIKLGG---------Y-E----SEEYLQRVASYINNKITEFN 45 (138)
T ss_dssp EEETTEEEEECS---------C-S----CHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCEEEEecC---------C-C----cHHHHHHHHHHHHHHHHHHH
Confidence 557888887644 1 1 15788888999999997754
No 9
>1yck_A Peptidoglycan recognition protein; PGRP-S, innate immunity, pattern recognition proteins, immune syste; 1.70A {Homo sapiens} SCOP: d.118.1.1 PDB: 3mu9_A* 2r2k_A 2z9n_A* 2r90_A* 3c93_A* 3cg9_A* 3cor_A* 3cxa_A* 3c2x_A* 3ng4_A* 3nkw_A* 3nno_A* 3nw3_A* 3o4k_A* 3ogx_A* 3olk_A* 3qj1_A* 3qs0_A* 3qv4_A* 3rt4_A* ...
Probab=22.50 E-value=36 Score=28.64 Aligned_cols=17 Identities=47% Similarity=0.724 Sum_probs=14.3
Q ss_pred CCcceEEEEEeeCCeEEee
Q 021435 131 DDVYHFISYIPVDGVLYEL 149 (312)
Q Consensus 131 ~~~~HFI~fV~~~G~lyEL 149 (312)
+..||| +|..||.|||.
T Consensus 71 digyhf--lI~~dG~I~eg 87 (175)
T 1yck_A 71 DVGYNF--LIGEDGLVYEG 87 (175)
T ss_dssp SCSCSE--EECTTSCEEES
T ss_pred ccCceE--EECCCCEEEEC
Confidence 467999 68899999993
No 10
>2f2l_A Peptidoglycan-recognition protein-LC isoform LCA; protein-peptidoglycan complex, membrane protein, immune SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila melanogaster} SCOP: d.118.1.1 PDB: 1z6i_A*
Probab=19.21 E-value=43 Score=28.01 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=13.8
Q ss_pred CCcceEEEEEeeCCeEEe
Q 021435 131 DDVYHFISYIPVDGVLYE 148 (312)
Q Consensus 131 ~~~~HFI~fV~~~G~lyE 148 (312)
|..||| +|-.||.|||
T Consensus 62 dIGYhf--lI~~dG~Iye 77 (167)
T 2f2l_A 62 DIAYNF--LIGGDGNVYV 77 (167)
T ss_dssp SCSCSE--EECTTSCEEE
T ss_pred CcCCcE--EEcCCCEEEE
Confidence 468999 5789999998
Done!