Query 021436
Match_columns 312
No_of_seqs 171 out of 803
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4293 Predicted membrane pro 100.0 9.2E-34 2E-38 273.6 10.0 296 10-310 4-309 (403)
2 cd08760 Cyt_b561_FRRS1_like Eu 99.9 1.5E-21 3.2E-26 171.0 12.6 120 188-310 3-130 (191)
3 smart00664 DoH Possible catech 99.8 7.4E-20 1.6E-24 153.5 18.2 139 51-197 3-146 (148)
4 PF04526 DUF568: Protein of un 99.8 2.8E-18 6.2E-23 133.9 11.2 100 91-194 1-101 (101)
5 smart00665 B561 Cytochrome b-5 99.8 2.2E-18 4.7E-23 141.7 10.1 94 215-310 1-96 (129)
6 PF03351 DOMON: DOMON domain; 99.7 8.2E-17 1.8E-21 130.7 16.4 112 50-167 3-124 (124)
7 PF03188 Cytochrom_B561: Eukar 99.7 1.3E-16 2.8E-21 132.2 10.6 94 215-308 1-95 (137)
8 cd08554 Cyt_b561 Eukaryotic cy 99.6 7.7E-16 1.7E-20 126.8 8.9 93 213-307 2-95 (131)
9 cd00241 CDH_cytochrome Cellobi 99.6 8.5E-15 1.8E-19 126.6 15.4 124 63-198 38-175 (184)
10 PF10348 DUF2427: Domain of un 99.6 1.6E-14 3.4E-19 114.3 9.6 91 207-307 12-103 (105)
11 cd08761 Cyt_b561_CYB561D2_like 99.5 1.1E-13 2.4E-18 120.4 8.8 99 210-308 18-118 (183)
12 cd08766 Cyt_b561_ACYB-1_like P 99.3 1E-11 2.3E-16 103.5 9.6 94 209-305 4-98 (144)
13 cd08762 Cyt_b561_CYBASC3 Verte 99.3 1.8E-11 3.8E-16 104.9 9.2 95 211-305 33-128 (179)
14 PLN02351 cytochromes b561 fami 99.2 7.7E-11 1.7E-15 105.2 9.3 89 212-305 49-140 (242)
15 cd08765 Cyt_b561_CYBRD1 Verteb 99.2 1.1E-10 2.3E-15 98.1 9.4 95 211-305 10-105 (153)
16 cd08764 Cyt_b561_CG1275_like N 99.1 2.2E-10 4.7E-15 101.4 8.9 93 210-304 21-116 (214)
17 PLN02680 carbon-monoxide oxyge 99.1 6.8E-10 1.5E-14 99.0 9.4 94 209-305 43-137 (232)
18 KOG3568 Dopamine beta-monooxyg 99.0 1.2E-09 2.7E-14 104.4 10.9 123 39-168 31-159 (603)
19 PLN02810 carbon-monoxide oxyge 99.0 9.6E-10 2.1E-14 97.4 9.4 92 210-304 44-136 (231)
20 cd08763 Cyt_b561_CYB561 Verteb 99.0 1.5E-09 3.2E-14 90.6 9.6 92 211-304 5-97 (143)
21 KOG1619 Cytochrome b [Energy p 98.7 1.3E-08 2.9E-13 90.1 5.4 94 210-305 52-146 (245)
22 smart00665 B561 Cytochrome b-5 96.1 0.022 4.7E-07 46.5 7.0 93 210-304 31-129 (129)
23 cd08554 Cyt_b561 Eukaryotic cy 96.0 0.038 8.2E-07 45.1 7.8 94 209-304 32-131 (131)
24 PF03188 Cytochrom_B561: Eukar 95.9 0.028 6.1E-07 46.0 6.7 97 208-306 30-132 (137)
25 cd08760 Cyt_b561_FRRS1_like Eu 95.7 0.067 1.4E-06 46.6 8.7 97 210-309 66-165 (191)
26 cd08761 Cyt_b561_CYB561D2_like 95.5 0.048 1E-06 47.3 6.9 97 208-306 53-157 (183)
27 cd08766 Cyt_b561_ACYB-1_like P 92.6 0.5 1.1E-05 39.5 7.0 96 209-306 37-138 (144)
28 cd08763 Cyt_b561_CYB561 Verteb 91.3 1.2 2.6E-05 37.2 7.8 95 210-306 38-138 (143)
29 cd08765 Cyt_b561_CYBRD1 Verteb 90.4 1.1 2.4E-05 37.8 6.9 96 209-306 44-145 (153)
30 cd08764 Cyt_b561_CG1275_like N 88.9 2.3 5E-05 37.9 8.1 95 211-306 56-157 (214)
31 PLN02680 carbon-monoxide oxyge 88.3 2.2 4.8E-05 38.5 7.6 96 209-306 76-177 (232)
32 PF13301 DUF4079: Protein of u 85.5 3.8 8.2E-05 35.4 7.2 80 221-304 90-169 (175)
33 cd08762 Cyt_b561_CYBASC3 Verte 82.4 8.7 0.00019 33.3 8.1 95 210-306 68-168 (179)
34 PLN02810 carbon-monoxide oxyge 78.3 10 0.00022 34.2 7.4 96 209-306 76-177 (231)
35 COG3038 CybB Cytochrome B561 [ 75.2 7.6 0.00017 33.7 5.7 52 259-310 19-75 (181)
36 KOG1619 Cytochrome b [Energy p 74.0 16 0.00035 33.1 7.5 95 209-305 85-185 (245)
37 PLN02351 cytochromes b561 fami 72.3 22 0.00049 32.2 8.1 95 209-306 80-180 (242)
38 PRK11513 cytochrome b561; Prov 71.4 6.2 0.00013 34.0 4.2 26 284-309 44-69 (176)
39 PF13301 DUF4079: Protein of u 70.9 43 0.00094 28.9 9.3 53 250-302 81-134 (175)
40 cd01663 Cyt_c_Oxidase_I Cytoch 63.3 56 0.0012 32.9 9.7 61 209-269 45-109 (488)
41 TIGR02230 ATPase_gene1 F0F1-AT 62.8 35 0.00076 26.7 6.4 52 210-272 36-90 (100)
42 PF00033 Cytochrom_B_N: Cytoch 59.1 77 0.0017 26.5 8.7 94 212-306 8-127 (188)
43 PF00033 Cytochrom_B_N: Cytoch 52.9 19 0.00041 30.3 3.9 57 250-306 10-71 (188)
44 PF11014 DUF2852: Protein of u 52.2 18 0.00039 29.0 3.3 22 216-237 11-32 (115)
45 COG4244 Predicted membrane pro 50.8 44 0.00096 28.4 5.6 50 245-294 44-98 (160)
46 COG2717 Predicted membrane pro 48.6 34 0.00074 30.4 4.8 42 212-255 112-153 (209)
47 KOG4671 Brain cell membrane pr 44.6 42 0.00091 29.2 4.6 61 247-309 78-138 (201)
48 cd01661 cbb3_Oxidase_I Cytochr 44.5 1.8E+02 0.0039 29.3 9.9 62 209-271 86-150 (493)
49 PF10348 DUF2427: Domain of un 44.1 70 0.0015 25.1 5.5 30 243-272 12-42 (105)
50 PF13706 PepSY_TM_3: PepSY-ass 42.8 27 0.00059 21.9 2.4 21 283-303 6-26 (37)
51 PF11168 DUF2955: Protein of u 42.4 1.1E+02 0.0023 25.2 6.6 56 249-311 41-96 (140)
52 COG3698 Predicted periplasmic 40.1 33 0.00072 30.7 3.4 49 8-58 7-57 (250)
53 PF01292 Ni_hydr_CYTB: Prokary 40.0 2.2E+02 0.0047 23.7 9.1 93 212-306 6-122 (182)
54 TIGR01191 ccmC heme exporter p 38.9 2.6E+02 0.0056 24.2 9.0 65 208-275 8-72 (184)
55 PF04238 DUF420: Protein of un 38.9 2.2E+02 0.0047 23.4 9.4 47 251-304 80-126 (133)
56 TIGR02891 CtaD_CoxA cytochrome 38.1 2E+02 0.0043 29.0 9.1 61 210-270 50-113 (506)
57 PF09323 DUF1980: Domain of un 34.6 2.5E+02 0.0054 24.0 8.0 17 294-310 78-94 (182)
58 PF13172 PepSY_TM_1: PepSY-ass 33.7 47 0.001 20.2 2.4 20 284-303 8-27 (34)
59 PF06027 DUF914: Eukaryotic pr 33.2 1.6E+02 0.0034 28.1 7.1 41 255-295 134-175 (334)
60 COG4787 FlgF Flagellar basal b 33.0 1.8E+02 0.0039 26.2 6.7 18 61-83 74-91 (251)
61 CHL00045 ccsA cytochrome c bio 32.8 99 0.0021 29.3 5.6 29 245-273 133-161 (319)
62 PF01578 Cytochrom_C_asm: Cyto 32.2 1.2E+02 0.0027 26.3 5.9 29 245-273 68-96 (214)
63 PF10242 L_HGMIC_fpl: Lipoma H 32.0 89 0.0019 26.9 4.8 56 212-269 69-126 (181)
64 PRK14488 cbb3-type cytochrome 31.8 3.7E+02 0.0079 26.9 9.7 62 209-271 52-116 (473)
65 PF14358 DUF4405: Domain of un 31.7 1.8E+02 0.0038 20.2 5.6 44 218-261 7-54 (64)
66 PF02628 COX15-CtaA: Cytochrom 30.3 1.1E+02 0.0024 28.3 5.5 23 283-305 254-276 (302)
67 PF14340 DUF4395: Domain of un 30.1 2E+02 0.0043 23.4 6.3 69 229-304 48-118 (131)
68 PF10966 DUF2768: Protein of u 29.9 2E+02 0.0043 20.2 6.1 44 219-269 6-49 (58)
69 PF01794 Ferric_reduct: Ferric 28.4 1.4E+02 0.0031 22.9 5.1 34 221-256 84-118 (125)
70 cd01660 ba3-like_Oxidase_I ba3 27.8 1.8E+02 0.004 29.0 6.8 61 209-270 44-107 (473)
71 COG3658 Cytochrome b [Energy p 27.1 97 0.0021 26.6 3.9 26 283-308 35-60 (192)
72 COG3125 CyoD Heme/copper-type 27.0 1.3E+02 0.0029 24.0 4.5 14 282-295 79-92 (111)
73 PF10856 DUF2678: Protein of u 26.9 88 0.0019 25.1 3.5 43 250-294 59-101 (118)
74 TIGR02125 CytB-hydogenase Ni/F 26.9 1.3E+02 0.0028 26.0 5.0 21 284-304 51-71 (211)
75 cd01662 Ubiquinol_Oxidase_I Ub 26.4 2E+02 0.0042 29.1 6.8 62 209-270 49-113 (501)
76 PRK05419 putative sulfite oxid 25.8 3.1E+02 0.0068 24.1 7.2 32 220-254 120-152 (205)
77 PF11286 DUF3087: Protein of u 25.3 2.9E+02 0.0063 23.6 6.6 26 284-309 49-74 (165)
78 COG4097 Predicted ferric reduc 25.1 2.5E+02 0.0055 27.4 6.8 57 246-302 32-96 (438)
79 TIGR02115 potass_kdpF K+-trans 24.7 72 0.0016 18.6 1.9 23 287-309 1-23 (26)
80 TIGR02896 spore_III_AF stage I 24.3 93 0.002 24.5 3.2 27 284-311 33-59 (106)
81 cd00919 Heme_Cu_Oxidase_I Heme 23.4 2.1E+02 0.0046 28.3 6.3 25 210-234 44-68 (463)
82 PRK14759 potassium-transportin 23.1 1.1E+02 0.0025 18.3 2.6 23 287-309 6-28 (29)
83 PF09604 Potass_KdpF: F subuni 22.2 1.2E+02 0.0027 17.4 2.6 23 287-309 2-24 (25)
84 PF05957 DUF883: Bacterial pro 21.9 88 0.0019 23.7 2.6 21 254-275 73-93 (94)
85 PF01578 Cytochrom_C_asm: Cyto 20.8 4.7E+02 0.01 22.5 7.5 68 210-277 69-150 (214)
86 COG4244 Predicted membrane pro 20.7 5E+02 0.011 22.1 7.1 55 248-303 86-140 (160)
87 PF13630 SdpI: SdpI/YhfL prote 20.4 1.9E+02 0.0041 20.5 4.1 29 245-273 20-48 (76)
No 1
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-34 Score=273.59 Aligned_cols=296 Identities=44% Similarity=0.736 Sum_probs=243.4
Q ss_pred HHHHHHHHHHhhcccccC--CCCccccccccccccccccCCCCCeEEEEEEecCCCeEEEEEEeccCCCCceEEEEeCCC
Q 021436 10 IVLGLSLWFLLISPALSL--TCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPT 87 (312)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~--~C~~~~~~~~~~~~~~C~~l~~~~~~l~W~~~~~~~~~~i~f~~~~~~~~gWVAiGfs~~ 87 (312)
+.++..++++...++.+| .|.++++ +.+..++.|.++|++++.++++|+.+++..++.|.... ...|++++++|+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~C~~~~~-~~~~~~~~c~~lp~~~~~i~~~~~~~~~~~~i~~~~~~--~~~w~~~~~~p~ 80 (403)
T KOG4293|consen 4 LIIGFALLFSLTSPAFSQTDTCSSQTF-NIDKSFDSCVDLPTLNSFIHYTYNSANGVLSIAFSAPL--SSAWVAWAINPT 80 (403)
T ss_pred EEehHhHHHhccCchhhhhcceeeeec-cCCccccccccCCCCCceEEEEEecCCCeEEEEEecCC--cccccccccCCc
Confidence 456667777777787777 5999999 77788999999999999999999998999999999853 334999999999
Q ss_pred CCCCCCCcEEEEEECC-CCcEEEEEEeecccccccCCCCeeEEeeccceEEeCCE---EEEEEEEecCCcccCCCceeEE
Q 021436 88 APGMAGSQALVAYKDS-KGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGL---MRIYGKVKVPEELAKAGKLNQV 163 (312)
Q Consensus 88 g~~M~gsd~~I~~~~~-~G~v~v~~~~~~g~~~p~~~~~~~~~v~~~s~~~~~g~---~~~~~~~~l~~~~~~~~~~~~i 163 (312)
+++|.++.++|+|..+ +|...+.++...++.+........+++.+...+++... +.+|++++++. .+...+..+
T Consensus 81 ~t~m~~~~~~va~~~~~~g~~~~~t~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~l~~--~~~~~~~~~ 158 (403)
T KOG4293|consen 81 GTGMVGSRALVAYAGSSSGATTVKTYVILGYSPSLVPALLSFTLGNVRAECNLRSSSPIGIFASFKLAG--ANGGKYSAV 158 (403)
T ss_pred cccccccceeeeeeccccchhhceeeeecccchhhcccccceeeecCcchhhccCCCCceEEEEEEeec--CCCceeEEE
Confidence 9889999999999975 67788889988888754444455667777666554333 77888999884 156789999
Q ss_pred eeecCCCCCCCCcccCCCCCCCCCCceEEecCCcccCCCC----CCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 021436 164 WQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSGAQTGGGS----TGTDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLR 239 (312)
Q Consensus 164 wa~G~~~~~~~~l~~H~~~g~n~~s~~~ldl~~g~~~~~~----~~~~~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k 239 (312)
|+.|+...++..+.+|...+.+..+...+|++...+.... ....+...++..||++|.++|++++|+|++.+||+|
T Consensus 159 w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~ 238 (403)
T KOG4293|consen 159 WQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGILNALSWGILFPAGAIIARYLR 238 (403)
T ss_pred EEccCCccCCCCCccCccccCCccceeecccccccccccccccCcccCcchhccccHHHHhhhhhheeccccceeEEEec
Confidence 9999875436789999998877666677787763322111 012333456667999999999999999999999999
Q ss_pred cccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHHhhhhhccCCC
Q 021436 240 TFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDIN 310 (312)
Q Consensus 240 ~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~~~g~~r~~~~ 310 (312)
..+..++.||++|+.+|..++++.+.|+..|.++.+++.+..+..|+.+|+.++++.++|++..++||.|+
T Consensus 239 ~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~ 309 (403)
T KOG4293|consen 239 QKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPE 309 (403)
T ss_pred ccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCcc
Confidence 88778999999999999999999999999999998887777788999999999999999999999999986
No 2
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.87 E-value=1.5e-21 Score=171.00 Aligned_cols=120 Identities=36% Similarity=0.598 Sum_probs=98.4
Q ss_pred CceEEecCCcccCCCCC--------CCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHH
Q 021436 188 SKGALDLSGAQTGGGST--------GTDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSA 259 (312)
Q Consensus 188 s~~~ldl~~g~~~~~~~--------~~~~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~ 259 (312)
+..++|+++|+.+.... +....+.+.++||++|++||++++|+|++++||++. .++.||++|+.+|+++
T Consensus 3 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~---~~~~~~~~H~~~q~~~ 79 (191)
T cd08760 3 SSYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLL---GDPVWFYLHAGLQLLA 79 (191)
T ss_pred cceEEEeccceeccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCchhHHHHHHHHHHH
Confidence 35678888876533210 112345788999999999999999999999999742 4689999999999999
Q ss_pred HHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHHhhhhhccCCC
Q 021436 260 YAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDIN 310 (312)
Q Consensus 260 ~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~~~g~~r~~~~ 310 (312)
++++++|+++++....+..+..++.|+++|+++++++++|+++|++||.+.
T Consensus 80 ~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~ 130 (191)
T cd08760 80 VLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPG 130 (191)
T ss_pred HHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999875222245688999999999999999999999999875
No 3
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.85 E-value=7.4e-20 Score=153.54 Aligned_cols=139 Identities=27% Similarity=0.472 Sum_probs=107.6
Q ss_pred CeEEEEEEecCCCeEEEEEEeccCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEeecccccccCCCCeeEEe
Q 021436 51 SSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSFDV 130 (312)
Q Consensus 51 ~~~l~W~~~~~~~~~~i~f~~~~~~~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~~~g~~~p~~~~~~~~~v 130 (312)
+..|+|+++.+ +.+.++++.+.. ..||||||||++++ |.|+|++|||.+.+|++.+.+++.+|+..|..+...++..
T Consensus 3 ~~~l~W~~~~~-~~v~~~l~~~~~-~~gwvaiGfs~~~~-M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~~~~~~~ 79 (148)
T smart00664 3 DYFLSWSVDGE-NSIAFELSGPTS-TNGWVAIGFSPDGQ-MAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDDQQDVTD 79 (148)
T ss_pred eEEEEEEECCC-CeEEEEEEEecC-CCCEEEEEECCCCC-cCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCccccccc
Confidence 46789999865 666566655422 38999999999866 9999999999987799999999999999887665554432
Q ss_pred eccceEEeCCEEEEEEEEecCCccc-----CCCceeEEeeecCCCCCCCCcccCCCCCCCCCCceEEecCCc
Q 021436 131 WDTSADESGGLMRIYGKVKVPEELA-----KAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSGA 197 (312)
Q Consensus 131 ~~~s~~~~~g~~~~~~~~~l~~~~~-----~~~~~~~iwa~G~~~~~~~~l~~H~~~g~n~~s~~~ldl~~g 197 (312)
. .++.+.+|.++|.|+|++.+++. ...+++++||.|+... ++.+.+|... ..+..++++.+.
T Consensus 80 ~-~~~~~~~g~~~~~f~R~l~t~d~~d~~~~~~~~~~i~a~G~~~~-~~~~~~H~~~---~~~~~~i~~~~~ 146 (148)
T smart00664 80 L-LSATYENGVLTCRFRRKLGSNDPDDKSLLDGTVHVLWAKGPLSP-NGGLGYHDFS---LKSTKKVCLSSC 146 (148)
T ss_pred c-eeEEEECCEEEEEEEEEccCCCccccccCCCeEEEEEEECCCCC-CCCeeecccc---ccCceEEEeccC
Confidence 2 16777899999999999998763 2457899999998332 6779999875 235678888764
No 4
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=99.77 E-value=2.8e-18 Score=133.89 Aligned_cols=100 Identities=51% Similarity=0.781 Sum_probs=94.2
Q ss_pred CCCCcEEEEEECCC-CcEEEEEEeecccccccCCCCeeEEeeccceEEeCCEEEEEEEEecCCcccCCCceeEEeeecCC
Q 021436 91 MAGSQALVAYKDSK-GAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPS 169 (312)
Q Consensus 91 M~gsd~~I~~~~~~-G~v~v~~~~~~g~~~p~~~~~~~~~v~~~s~~~~~g~~~~~~~~~l~~~~~~~~~~~~iwa~G~~ 169 (312)
|.|++++|++++++ |.+.+++|.+++|.++..++.+++++.+.++++++++++||++++|+. +.++++++|++|+.
T Consensus 1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~l~~~~lsf~v~~lsae~~~~~~~IfAtl~Lp~---n~t~vnhVWQ~G~~ 77 (101)
T PF04526_consen 1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPSLQPGPLSFDVSDLSAEYSGGEMTIFATLKLPG---NSTSVNHVWQVGPS 77 (101)
T ss_pred CCCceEEEEEeCCCCceEEEEEEeecccccccccccccccccceEeEEeCCEEEEEEEEEcCC---CCcEEEEEeCcCCc
Confidence 99999999999987 899999999999998788888999999999999999999999999997 89999999999998
Q ss_pred CCCCCCcccCCCCCCCCCCceEEec
Q 021436 170 VTPEGMIAKHDFAPPNLNSKGALDL 194 (312)
Q Consensus 170 ~~~~~~l~~H~~~g~n~~s~~~ldl 194 (312)
++ ++.+..|+..++|+.|+.+|||
T Consensus 78 v~-gg~p~~H~~~~~Nl~S~gtldl 101 (101)
T PF04526_consen 78 VQ-GGSPQPHPTSGANLQSKGTLDL 101 (101)
T ss_pred cC-CCccccCCCCCccccceEEecC
Confidence 76 7899999999999999999997
No 5
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.77 E-value=2.2e-18 Score=141.70 Aligned_cols=94 Identities=30% Similarity=0.405 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh-hhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhHHHH
Q 021436 215 IHGVLNAVSWGILFPIGAIIARY-LRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIGIAL 292 (312)
Q Consensus 215 ~Hg~lm~iaw~~l~P~g~~~aR~-~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG~~v 292 (312)
+||++|+++|++++|.|++++|+ .+. ..++.||++|+.+|+++++++++|+++++...++.+ ...++.|+++|+++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~--~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRF--LSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHH
Confidence 69999999999999999999998 332 246899999999999999999999999988766543 35678999999999
Q ss_pred HHHHHHHHhhhhhccCCC
Q 021436 293 FSLATVQVTKALVVHDIN 310 (312)
Q Consensus 293 ~~l~~~Q~~~g~~r~~~~ 310 (312)
+++.++|++.|++|+.++
T Consensus 79 ~~l~~~Q~~~G~~~~~~~ 96 (129)
T smart00665 79 FVLAGLQWLSGFLRPLPP 96 (129)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999999885
No 6
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.75 E-value=8.2e-17 Score=130.71 Aligned_cols=112 Identities=21% Similarity=0.351 Sum_probs=90.1
Q ss_pred CCeEEEEEEecCCCeEEEEEEeccCC-CCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEe-ecccccccCCCC--
Q 021436 50 LSSFLHFTYDASNRSLSIAFVAAPAK-SGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYN-VSSYESIVPTKK-- 125 (312)
Q Consensus 50 ~~~~l~W~~~~~~~~~~i~f~~~~~~-~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~-~~g~~~p~~~~~-- 125 (312)
.+..|.|+++.+++.+ .|+++++. ..||+|+||+++++ |.++|+++|+.+ +|++.+++++ ..++..|..+..
T Consensus 3 ~~~~l~w~~~~~~~~i--~~~l~~~~~~~~w~aiGfs~~~~-M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~ 78 (124)
T PF03351_consen 3 CNFSLSWTVDGDNNTI--EFELTGPANTNGWVAIGFSDDGG-MGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGS 78 (124)
T ss_pred ceEEEEEEEECCCCEE--EEEEEeccCCCCEEEEEEccccC-CCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccC
Confidence 3467899998666554 55555443 38999999999887 999999999998 6999999999 899988887743
Q ss_pred eeEEeeccceEEeCCEEEEEEEEecCCccc------CCCceeEEeeec
Q 021436 126 LSFDVWDTSADESGGLMRIYGKVKVPEELA------KAGKLNQVWQVG 167 (312)
Q Consensus 126 ~~~~v~~~s~~~~~g~~~~~~~~~l~~~~~------~~~~~~~iwa~G 167 (312)
.++.+. ++.+++|.++|.|+|++.+++. ...++++|||+|
T Consensus 79 ~~~~~~--~~~~~~g~~~~~F~R~l~t~d~~d~~l~~~~~~~~i~A~G 124 (124)
T PF03351_consen 79 QDIQLL--SGSYSNGTTTCSFTRPLNTGDSQDYDLDSNGTYYVIWAYG 124 (124)
T ss_pred CcEEEE--EEEEECCEEEEEEEEEccCCCCCccEecCCCcEEEEEEeC
Confidence 666655 4556899999999999998753 356789999987
No 7
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.69 E-value=1.3e-16 Score=132.15 Aligned_cols=94 Identities=22% Similarity=0.279 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhHHHHH
Q 021436 215 IHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIGIALF 293 (312)
Q Consensus 215 ~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG~~v~ 293 (312)
+|++||++||++++|.|++++|+.+..+.+++.|+++|+.+|.+++++.++|+++++...++.+ ...++.|.++|++++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~ 80 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF 80 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence 5999999999999999999999744223357899999999999999999999999888655332 455789999999999
Q ss_pred HHHHHHHhhhhhccC
Q 021436 294 SLATVQVTKALVVHD 308 (312)
Q Consensus 294 ~l~~~Q~~~g~~r~~ 308 (312)
+++++|++.|++++.
T Consensus 81 ~l~~~Q~~~G~~~~~ 95 (137)
T PF03188_consen 81 VLALLQPLLGFFRFF 95 (137)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999876
No 8
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.64 E-value=7.7e-16 Score=126.81 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=82.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhHHH
Q 021436 213 RNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIGIA 291 (312)
Q Consensus 213 ~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG~~ 291 (312)
.++|+++|.++|++++|.|++++|++|.. .++.|+++|+.+|.+++++.++|+++++...++.+ ...++.|.++|++
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~--~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~ 79 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLL--TKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLA 79 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHH
Confidence 47899999999999999999999998765 46799999999999999999999999988664332 3457899999999
Q ss_pred HHHHHHHHHhhhhhcc
Q 021436 292 LFSLATVQVTKALVVH 307 (312)
Q Consensus 292 v~~l~~~Q~~~g~~r~ 307 (312)
++++.++|++.|++++
T Consensus 80 ~~~l~~~q~~~G~~~~ 95 (131)
T cd08554 80 TVLLFLLQFLSGFVLF 95 (131)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998885
No 9
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=99.63 E-value=8.5e-15 Score=126.57 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=96.3
Q ss_pred CeEEEEEEeccCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEeecccccc-cCCCCeeEEeeccceEEeCCE
Q 021436 63 RSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESI-VPTKKLSFDVWDTSADESGGL 141 (312)
Q Consensus 63 ~~~~i~f~~~~~~~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~~~g~~~p-~~~~~~~~~v~~~s~~~~~g~ 141 (312)
+..|+++++++|.+.||+|+|+ |.+|.|+.++|+|++. ++|++++|+.+||.+| .++++..++++..+.. +++.
T Consensus 38 ~~~d~i~qi~aP~~~gW~gls~---Gg~M~~~~L~vaw~~g-~~Vt~S~R~atg~~~P~~y~g~a~~t~L~gs~v-n~t~ 112 (184)
T cd00241 38 DSTEFIGELVAPRASGWIGLAL---GGAMTNSLLLVAWPNG-NQIVSSTRYATGYTLPDAYTGPATITQLPSSSV-NSTH 112 (184)
T ss_pred CCCCEEEEEeCcCCCCeEEEee---cccCCCCeEEEEEcCC-CeEEEeEEEecCccCCCccCCCceEEECCCCcE-eCCE
Confidence 4569999999999999999997 7779999999999974 4699999999999999 4667778988876654 5888
Q ss_pred EEEEEEEecCCccc-------C-CCceeEEeeec---CCCC--CCCCcccCCCCCCCCCCceEEecCCcc
Q 021436 142 MRIYGKVKVPEELA-------K-AGKLNQVWQVG---PSVT--PEGMIAKHDFAPPNLNSKGALDLSGAQ 198 (312)
Q Consensus 142 ~~~~~~~~l~~~~~-------~-~~~~~~iwa~G---~~~~--~~~~l~~H~~~g~n~~s~~~ldl~~g~ 198 (312)
++ ++++|++|.. + ...-.++||.+ +..+ ++..|.+|+..| .+.+||..+.
T Consensus 113 ~t--~~~rC~nC~~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd~~G-----~f~~dl~~A~ 175 (184)
T cd00241 113 WK--LVFRCQNCTSWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFG-----FFGINLSDAQ 175 (184)
T ss_pred EE--EEEEeCCCcccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceecCCc-----ceeEechhcc
Confidence 87 5777777742 1 11227899985 2221 567899999654 5999998653
No 10
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=99.57 E-value=1.6e-14 Score=114.27 Aligned_cols=91 Identities=24% Similarity=0.398 Sum_probs=78.4
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCCCC-CcCCh
Q 021436 207 DSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGV-TYTGH 285 (312)
Q Consensus 207 ~~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~-~~~~H 285 (312)
+..+.+.++|+++|.++|++++|+|+++.+. | . ++|..+|.++++++++|+.+|....+..++. .++.|
T Consensus 12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~------s---r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~H 81 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWVILYPIGLVLGNA-R------S---RWHLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNAH 81 (105)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHc-c------c---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence 3456789999999999999999999997543 2 2 3499999999999999999998877665444 68899
Q ss_pred hhhHHHHHHHHHHHHhhhhhcc
Q 021436 286 RNIGIALFSLATVQVTKALVVH 307 (312)
Q Consensus 286 ~~lG~~v~~l~~~Q~~~g~~r~ 307 (312)
.++|+++++++++|+++|++++
T Consensus 82 ~k~g~il~~l~~~q~~~gv~~~ 103 (105)
T PF10348_consen 82 GKMGWILFVLMIVQVILGVILK 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 11
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.48 E-value=1.1e-13 Score=120.40 Aligned_cols=99 Identities=16% Similarity=0.067 Sum_probs=80.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-CCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhh
Q 021436 210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFE-SADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRN 287 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~-~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~ 287 (312)
+.+.++|+++|.++|++++|.|++..|-.+..+ ..++.|+++|+.+|.+++++.++|+++.+...++.+ ...++.|.+
T Consensus 18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~ 97 (183)
T cd08761 18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGI 97 (183)
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHH
Confidence 468999999999999999999999755322211 246789999999999999999999988776544322 345789999
Q ss_pred hHHHHHHHHHHHHhhhhhccC
Q 021436 288 IGIALFSLATVQVTKALVVHD 308 (312)
Q Consensus 288 lG~~v~~l~~~Q~~~g~~r~~ 308 (312)
+|++++++.++|++.|++++.
T Consensus 98 lGl~~~~l~~~Q~~~G~~~~~ 118 (183)
T cd08761 98 LGLVTVILIVLQALGGLALLY 118 (183)
T ss_pred HHHHHHHHHHHHHHHhHHHHh
Confidence 999999999999999997643
No 12
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.31 E-value=1e-11 Score=103.52 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=80.0
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhh
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRN 287 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~ 287 (312)
.....++|..||.+++.++++-++++.|..| ..++.|..+|+.+|.+++++.++|+...+...++.+ ...++.|.+
T Consensus 4 ~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~---~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSw 80 (144)
T cd08766 4 KGLIFNVHPVLMVIGFIFLAGEAILAYKTVP---GSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSW 80 (144)
T ss_pred CcceeeccHHHHHHHHHHHHHHHHHHhhccc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHH
Confidence 3468899999999999999999999988654 345678899999999999999999988777655443 346789999
Q ss_pred hHHHHHHHHHHHHhhhhh
Q 021436 288 IGIALFSLATVQVTKALV 305 (312)
Q Consensus 288 lG~~v~~l~~~Q~~~g~~ 305 (312)
+|++++++..+|.+.|+.
T Consensus 81 lGl~t~~L~~lQ~~~G~~ 98 (144)
T cd08766 81 LGIGTISLFGLQWLFGFV 98 (144)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998864
No 13
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.27 E-value=1.8e-11 Score=104.89 Aligned_cols=95 Identities=23% Similarity=0.261 Sum_probs=80.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhH
Q 021436 211 KKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIG 289 (312)
Q Consensus 211 ~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG 289 (312)
+..++|.+||.++++++...++++-|..+.++..+..|..+|..+|.++++++++|+...+...++.+ ...++.|.++|
T Consensus 33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlG 112 (179)
T cd08762 33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVG 112 (179)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHH
Confidence 47899999999999999999988877555443356678999999999999999999999888776554 34578899999
Q ss_pred HHHHHHHHHHHhhhhh
Q 021436 290 IALFSLATVQVTKALV 305 (312)
Q Consensus 290 ~~v~~l~~~Q~~~g~~ 305 (312)
++++++..+|.+.|++
T Consensus 113 l~t~~Lf~lQ~~~Gf~ 128 (179)
T cd08762 113 ICTVALFTCQWVMGFT 128 (179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 14
>PLN02351 cytochromes b561 family protein
Probab=99.19 E-value=7.7e-11 Score=105.16 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=75.2
Q ss_pred hh-hhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC--CCCcCChhhh
Q 021436 212 KR-NIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK--GVTYTGHRNI 288 (312)
Q Consensus 212 ~~-~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~--~~~~~~H~~l 288 (312)
.. ++|.+||.++++++.+-+|++.|++|. .++.|..+|+.+|.++++++++|+.. ...++.+ ...++.|.++
T Consensus 49 iffn~HP~lMviGfi~L~geAILvYR~~~~---~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSWl 123 (242)
T PLN02351 49 VYAVLHPLLMVIGFILISGEAILVHRWLPG---SRKTKKSVHLWLQGLALASGVFGIWT--KFHGQDGIVANFYSLHSWM 123 (242)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCCccchhHHHHHH
Confidence 44 799999999999999999999998763 34569999999999999999999998 3333221 3468899999
Q ss_pred HHHHHHHHHHHHhhhhh
Q 021436 289 GIALFSLATVQVTKALV 305 (312)
Q Consensus 289 G~~v~~l~~~Q~~~g~~ 305 (312)
|++++++..+|.+.|+.
T Consensus 124 Gl~tv~Lf~lQwv~Gf~ 140 (242)
T PLN02351 124 GLICVSLFGAQWLTGFM 140 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998873
No 15
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=99.19 E-value=1.1e-10 Score=98.11 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=80.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhH
Q 021436 211 KKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIG 289 (312)
Q Consensus 211 ~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG 289 (312)
...++|.+||.+++.++..-++++-|..+..+..++.+-.+|+.+|.+++++.++|+...+...++.+ ...++.|.++|
T Consensus 10 ~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlG 89 (153)
T cd08765 10 AEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVG 89 (153)
T ss_pred CeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence 47899999999999999999999977544333345677899999999999999999998777655443 45689999999
Q ss_pred HHHHHHHHHHHhhhhh
Q 021436 290 IALFSLATVQVTKALV 305 (312)
Q Consensus 290 ~~v~~l~~~Q~~~g~~ 305 (312)
++++++..+|.+.|+.
T Consensus 90 l~t~~l~~lQ~~~Gf~ 105 (153)
T cd08765 90 LAAVILYPLQLVLGIS 105 (153)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 16
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.12 E-value=2.2e-10 Score=101.40 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=79.3
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccC--C-CCCcCChh
Q 021436 210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDS--K-GVTYTGHR 286 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~--~-~~~~~~H~ 286 (312)
...+++|.++|.+++.+++.-++++.|.+|.. ++..|..+|+.+|.++++++++|+...+...++. + ...++.|.
T Consensus 21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~--~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHS 98 (214)
T cd08764 21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNT--RKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHS 98 (214)
T ss_pred CceEeecHHHHHHHHHHHHHHHHHHhccCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHH
Confidence 35689999999999999999999999977643 3556778999999999999999988877655443 2 34588999
Q ss_pred hhHHHHHHHHHHHHhhhh
Q 021436 287 NIGIALFSLATVQVTKAL 304 (312)
Q Consensus 287 ~lG~~v~~l~~~Q~~~g~ 304 (312)
++|++.+++..+|.+.|+
T Consensus 99 wlGl~t~~L~~lQ~~~Gf 116 (214)
T cd08764 99 WLGLTAVILFSLQWVGGF 116 (214)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999987
No 17
>PLN02680 carbon-monoxide oxygenase
Probab=99.06 E-value=6.8e-10 Score=98.98 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=79.3
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhh
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRN 287 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~ 287 (312)
....+++|.+||.+++.++.--+++.-|. .+..++.+-.+|+.+|.+++++.++|+...++..++.+ ...++.|.+
T Consensus 43 ~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~---~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSW 119 (232)
T PLN02680 43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKT---VPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSW 119 (232)
T ss_pred CcceEechHHHHHHHHHHHHHHHHhcccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHH
Confidence 34588999999999999999999998554 44445677899999999999999999998777665443 356889999
Q ss_pred hHHHHHHHHHHHHhhhhh
Q 021436 288 IGIALFSLATVQVTKALV 305 (312)
Q Consensus 288 lG~~v~~l~~~Q~~~g~~ 305 (312)
+|++++++..+|.+.|+.
T Consensus 120 lGl~t~iL~~lQ~~~Gf~ 137 (232)
T PLN02680 120 LGLACLFLFSLQWAAGFV 137 (232)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998874
No 18
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]
Probab=99.05 E-value=1.2e-09 Score=104.38 Aligned_cols=123 Identities=13% Similarity=0.187 Sum_probs=92.0
Q ss_pred ccccccccCCCC-CeEEEEEEecCCCeEEEEEEeccCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEeeccc
Q 021436 39 EIYAHCLDLPSL-SSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSY 117 (312)
Q Consensus 39 ~~~~~C~~l~~~-~~~l~W~~~~~~~~~~i~f~~~~~~~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~~~g~ 117 (312)
+.|.....+... +..|.|.++...+.+++.++.. ..+||++|||+.|. |.+||+++.|.+ .+...+.|++.+..
T Consensus 31 s~~~~h~~~~~e~~~~lsW~vdy~~q~i~F~l~~~---t~~~v~fGfSdrG~-lanaDivv~~n~-g~~~~~~DayTn~d 105 (603)
T KOG3568|consen 31 STYPHHTLLDSEGKYWLSWSVDYRGQQIAFRLQVR---TAGYVGFGFSDRGA-LANADIVVGGNA-GGRPYLQDAYTNAD 105 (603)
T ss_pred CCccceeeecCCCcEEEEEeeccccceeEEEEEec---cCCEEEEecCCcCC-cccCcEEEEecc-CCchhhhhhhcCCC
Confidence 456666666544 5589999888777655555553 78999999999998 999999999964 55678889987766
Q ss_pred ccccCCCCeeEEeeccceEEeCCEEEEEEEEecCCcccC-----CCceeEEeeecC
Q 021436 118 ESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAK-----AGKLNQVWQVGP 168 (312)
Q Consensus 118 ~~p~~~~~~~~~v~~~s~~~~~g~~~~~~~~~l~~~~~~-----~~~~~~iwa~G~ 168 (312)
.+-..|.|+|++++...- +....++.|+|++.+||.+ +++.+++||.-.
T Consensus 106 ~qi~~D~QQDyqll~~~e--~~~~~~i~frRkl~TCDp~Dy~i~dgTv~vv~a~~e 159 (603)
T KOG3568|consen 106 GQIKKDAQQDYQLLYAME--NSTHTIIEFRRKLHTCDPNDYSITDGTVRVVWAYLE 159 (603)
T ss_pred CceecchhhhhHHHhhhc--cCCccEEEEecccCcCCccceeccCCeEEEEEEEec
Confidence 666677788888774332 2333446799999999863 668899999654
No 19
>PLN02810 carbon-monoxide oxygenase
Probab=99.04 E-value=9.6e-10 Score=97.42 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=79.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhh
Q 021436 210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNI 288 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~l 288 (312)
....++|.+||.+++.++..-++++-|.++. .++.+-.+|+.+|.++++++++|+...+...++.+ ...++.|.++
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~---~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWl 120 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL---KKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWL 120 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHH
Confidence 3478999999999999999999999776553 34567899999999999999999998888766554 4468999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 021436 289 GIALFSLATVQVTKAL 304 (312)
Q Consensus 289 G~~v~~l~~~Q~~~g~ 304 (312)
|++++++..+|.+.|+
T Consensus 121 Gl~tv~Lf~lQw~~Gf 136 (231)
T PLN02810 121 GIGIISLYGIQWIYGF 136 (231)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999988
No 20
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.03 E-value=1.5e-09 Score=90.56 Aligned_cols=92 Identities=20% Similarity=0.146 Sum_probs=78.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhH
Q 021436 211 KKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIG 289 (312)
Q Consensus 211 ~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG 289 (312)
...++|..+|.+++.+++--++++-|..+.. .++.+-.+|+.+|.+++++.++|+...+...++.+ ...++.|.++|
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~--~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlG 82 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNE--TKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCG 82 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence 3789999999999999999999998765543 34566789999999999999999998776544433 35689999999
Q ss_pred HHHHHHHHHHHhhhh
Q 021436 290 IALFSLATVQVTKAL 304 (312)
Q Consensus 290 ~~v~~l~~~Q~~~g~ 304 (312)
++.+++..+|.+.|+
T Consensus 83 l~t~~L~~lQ~~~G~ 97 (143)
T cd08763 83 ILTFVLYFLQWLIGF 97 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999885
No 21
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=98.73 E-value=1.3e-08 Score=90.13 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=80.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhh
Q 021436 210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNI 288 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~l 288 (312)
++.+++|++||.++|..+---++++.|.+|.- .++.=.-+|..+|+++++++++|+.-.+...+..+ ...++.|.++
T Consensus 52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~--~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWl 129 (245)
T KOG1619|consen 52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYT--SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWL 129 (245)
T ss_pred chhcCcchHHHHHHHHHhccceeeeeehhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHH
Confidence 56889999999999999999999999987753 23444589999999999999999998888776554 3458899999
Q ss_pred HHHHHHHHHHHHhhhhh
Q 021436 289 GIALFSLATVQVTKALV 305 (312)
Q Consensus 289 G~~v~~l~~~Q~~~g~~ 305 (312)
|+.++.+..+|.+.|++
T Consensus 130 Gl~~v~ly~~Q~v~GF~ 146 (245)
T KOG1619|consen 130 GLCVVILYSLQWVFGFF 146 (245)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
No 22
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.11 E-value=0.022 Score=46.45 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=67.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccC------CCCCcC
Q 021436 210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDS------KGVTYT 283 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~------~~~~~~ 283 (312)
.....+|.+++.++..+.. +|+.++=+.|... +++.+...|..+=+..+++.++=.+.|+...... +...+-
T Consensus 31 ~~~~~~H~~lq~~a~~~~~-~g~~~~~~~~~~~-~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~ 108 (129)
T smart00665 31 PTWFLLHVVLQILALVLGV-IGLLAIFISHNES-GIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNP 108 (129)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHcccc-CCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 4577999999999988765 5554443334321 2356778999999999988888777776643221 112234
Q ss_pred ChhhhHHHHHHHHHHHHhhhh
Q 021436 284 GHRNIGIALFSLATVQVTKAL 304 (312)
Q Consensus 284 ~H~~lG~~v~~l~~~Q~~~g~ 304 (312)
.|+.+|.+++.++.++..+|+
T Consensus 109 ~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 109 YHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 899999999999999998875
No 23
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=95.97 E-value=0.038 Score=45.11 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=67.7
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcc--ccC----CCCCc
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG--SDS----KGVTY 282 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~--~~~----~~~~~ 282 (312)
+.....+|.+++.+++.+.. +|+.++=+.|.. .+.+.+...|..+=++++++.++-++.|+... .+. +...+
T Consensus 32 ~~~~~~~H~~l~~l~~~~~~-~G~~~~~~~~~~-~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~ 109 (131)
T cd08554 32 KRALKLLHAILHLLAFVLGL-VGLLAVFLFHNA-GGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLL 109 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccc-cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 34567899999999998775 555444344432 13445567999999999999888888886653 111 11235
Q ss_pred CChhhhHHHHHHHHHHHHhhhh
Q 021436 283 TGHRNIGIALFSLATVQVTKAL 304 (312)
Q Consensus 283 ~~H~~lG~~v~~l~~~Q~~~g~ 304 (312)
..|+.+|.++++++..+..+|+
T Consensus 110 ~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 110 PFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999998874
No 24
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=95.88 E-value=0.028 Score=46.04 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=68.2
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccc--cC----CCCC
Q 021436 208 SRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGS--DS----KGVT 281 (312)
Q Consensus 208 ~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~--~~----~~~~ 281 (312)
++....+.|.+++.++.....-..+++.. .|... +.+.+...|..+=++.+++.++=.++|+.... +. +...
T Consensus 30 ~~~~~~~~H~~lq~l~~~~~~~G~~~~~~-~~~~~-~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~ 107 (137)
T PF03188_consen 30 SRKWWFRIHWILQVLALVFAIIGFVAIFI-NKNRN-GKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIW 107 (137)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH-hcccc-CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHH
Confidence 34567899999999988766544444433 23322 23455678999988888888887777766432 11 1123
Q ss_pred cCChhhhHHHHHHHHHHHHhhhhhc
Q 021436 282 YTGHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 282 ~~~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
...|+.+|+++++++++++..|+..
T Consensus 108 ~~~H~~~G~~~~~l~~~~i~~G~~~ 132 (137)
T PF03188_consen 108 NKWHRWLGYLIYVLAIATIFLGLTE 132 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4469999999999999999999853
No 25
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.69 E-value=0.067 Score=46.60 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=68.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccC---CCCCcCChh
Q 021436 210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDS---KGVTYTGHR 286 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~---~~~~~~~H~ 286 (312)
....+.|..++.++..+.. +|..++-+.+ ..+.+.....|..+=++.+++.++=.++|+..-... +...+-.|+
T Consensus 66 ~~~~~~H~~~q~~~~~~~i-~g~~~~~~~~--~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~ 142 (191)
T cd08760 66 PVWFYLHAGLQLLAVLLAI-AGFVLGIVLV--QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHR 142 (191)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHhh--ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHH
Confidence 4567899999998876655 4444433333 123344568999998888888888777787643222 223356899
Q ss_pred hhHHHHHHHHHHHHhhhhhccCC
Q 021436 287 NIGIALFSLATVQVTKALVVHDI 309 (312)
Q Consensus 287 ~lG~~v~~l~~~Q~~~g~~r~~~ 309 (312)
.+|.+++++..+|+.+|+.-...
T Consensus 143 ~~G~~~~~l~~v~i~~G~~~~~~ 165 (191)
T cd08760 143 WLGRAALILAIVNIFLGLDLAGA 165 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999876554
No 26
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.46 E-value=0.048 Score=47.27 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=68.1
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccc--------cCCC
Q 021436 208 SRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGS--------DSKG 279 (312)
Q Consensus 208 ~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~--------~~~~ 279 (312)
++....+.|++++.++..+.. +|..+.=+.|..+ +++.+-..|..+=+..+++.++=.+.|+.... +.+.
T Consensus 53 ~~~~~~~~H~~l~~la~~~~~-~G~~~~~~~~~~~-~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~ 130 (183)
T cd08761 53 ARKTKVRLHWILQLLALLCIL-AGLVAIYYNKERN-GKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAK 130 (183)
T ss_pred hhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhcccC-CCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHH
Confidence 344678999999999987765 4544333334322 34555678999988888888887777775321 1111
Q ss_pred CCcCChhhhHHHHHHHHHHHHhhhhhc
Q 021436 280 VTYTGHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 280 ~~~~~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
.....|+.+|.++++++.++..+|+..
T Consensus 131 ~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 131 KLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 234589999999999999999999854
No 27
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=92.57 E-value=0.5 Score=39.49 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=66.7
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhc--cccC----CCCCc
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKL--GSDS----KGVTY 282 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~--~~~~----~~~~~ 282 (312)
+...+.+|.+|..+|.... -+|+.++=..|... +.+.-..+|-.+=++++++..+=+..|+.. ..+. +....
T Consensus 37 k~~~k~iH~~l~~la~~~~-vvGl~avf~~~~~~-~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~ 114 (144)
T cd08766 37 REVQKAVHLTLHLVALVLG-IVGIYAAFKFHNEV-GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALL 114 (144)
T ss_pred cchhHHHHHHHHHHHHHHH-HHHHHHHHHHhccc-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3456789999999998765 45554443334322 233434689999999999888877777642 2111 11224
Q ss_pred CChhhhHHHHHHHHHHHHhhhhhc
Q 021436 283 TGHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 283 ~~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
..|+..|.+++++++....+|+..
T Consensus 115 p~H~~~G~~~~~la~~t~~lGl~e 138 (144)
T cd08766 115 PWHVFLGLAIYYLAIATAETGLLE 138 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999864
No 28
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=91.30 E-value=1.2 Score=37.23 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=66.4
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcc--ccC----CCCCcC
Q 021436 210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG--SDS----KGVTYT 283 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~--~~~----~~~~~~ 283 (312)
.....+|.+|..+|.... -+|+.++=..|... +.|.---+|-.+=++++++...-++.|+... .+. +....-
T Consensus 38 ~~~k~~H~~L~~la~~~~-~~Gl~av~~~h~~~-~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p 115 (143)
T cd08763 38 RSTKILHGLLHIMALVIS-LVGLVAVFDYHQAN-GYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKP 115 (143)
T ss_pred chhHHHHHHHHHHHHHHH-HHHHHHHHHHcccc-CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhH
Confidence 445679999999998655 45555443344332 3455568999999999998888788776542 111 111123
Q ss_pred ChhhhHHHHHHHHHHHHhhhhhc
Q 021436 284 GHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 284 ~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
.|+..|++++++++....+|+..
T Consensus 116 ~H~~~G~~~f~la~~t~~lG~~e 138 (143)
T cd08763 116 LHEFFGRALFLSSVGTSLLGLTE 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999864
No 29
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=90.43 E-value=1.1 Score=37.81 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=69.5
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcc-----ccC-CCCCc
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG-----SDS-KGVTY 282 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~-----~~~-~~~~~ 282 (312)
+...+.+|.+|..+|.... -+|+.++=..|... +.|.-.-+|-.+=++++++...=++.|+... +.+ +....
T Consensus 44 k~~~k~iH~~L~~~a~~~~-i~Gl~avf~~hn~~-~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~ 121 (153)
T cd08765 44 KLLMKLIHAGLHILAFILA-IISVVAVFVFHNAK-NIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALM 121 (153)
T ss_pred chhhHHHHHHHHHHHHHHH-HHHHHHHHHHcccc-CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence 4467899999999998665 45555444444432 3456668999999999999888888886543 111 11234
Q ss_pred CChhhhHHHHHHHHHHHHhhhhhc
Q 021436 283 TGHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 283 ~~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
..|+..|++++++++.-..+|+..
T Consensus 122 p~H~~~G~~i~~Lai~t~~lG~~e 145 (153)
T cd08765 122 PLHVYSGLFIFGTVIATALMGITE 145 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999864
No 30
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=88.90 E-value=2.3 Score=37.91 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=63.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-CCCchhhhhhHHHHHHHHHHHHHHHHhhhhc--ccc-C---CCCCcC
Q 021436 211 KKRNIHGVLNAVSWGILFPIGAIIARYLRTFE-SADPAWFYLHVLCQSSAYAIGVAGWGTGLKL--GSD-S---KGVTYT 283 (312)
Q Consensus 211 ~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~-~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~--~~~-~---~~~~~~ 283 (312)
+.+.+|.+|..+|..+. -+|+.++--.+... .+.+.-..+|-.+=+.++++..+-++.|+.. ..+ + +.....
T Consensus 56 ~~k~~H~~L~~lAl~~~-ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p 134 (214)
T cd08764 56 RLKLLHAVLHLLAFILA-VIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLP 134 (214)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhH
Confidence 45679999999998665 34433321112211 1234444689999999999888777777643 211 1 111234
Q ss_pred ChhhhHHHHHHHHHHHHhhhhhc
Q 021436 284 GHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 284 ~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
.|+..|++++++++....+|+.-
T Consensus 135 ~H~~~Gl~~fvLaiaT~~lGl~e 157 (214)
T cd08764 135 LHVFFGLFIFVLAVATALLGITE 157 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999854
No 31
>PLN02680 carbon-monoxide oxygenase
Probab=88.30 E-value=2.2 Score=38.46 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=67.1
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhc--ccc----CCCCCc
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKL--GSD----SKGVTY 282 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~--~~~----~~~~~~ 282 (312)
+...+.+|.+|..+|.... -+|+..+=.++... +.+.-..+|-.+=+.++++..+=++.|+.. ..+ .+....
T Consensus 76 k~~~K~iH~~L~~lA~~l~-vvGl~avfk~hn~~-~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~ 153 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLS-LIGVWAALKFHNEK-GIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLL 153 (232)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHHhcccc-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence 3456789999999998766 55554433333322 334445789999999999888877777654 111 111123
Q ss_pred CChhhhHHHHHHHHHHHHhhhhhc
Q 021436 283 TGHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 283 ~~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
..|+..|++++++++....+|+..
T Consensus 154 p~H~~~G~~if~LaiaT~~lG~~E 177 (232)
T PLN02680 154 PWHVFFGIYIYALAVATATTGILE 177 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999864
No 32
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=85.50 E-value=3.8 Score=35.41 Aligned_cols=80 Identities=9% Similarity=0.040 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHH
Q 021436 221 AVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQV 300 (312)
Q Consensus 221 ~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~ 300 (312)
.+.|+.+.-+|-+..=|.+. ++.+..-|...=+....+..+...+.-...++.+....+.|-.++++++++.+.|.
T Consensus 90 ll~~~~L~~lGG~~~~~~~~----~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lHi~lN~~~l~Lf~~q~ 165 (175)
T PF13301_consen 90 LLAFMGLGALGGQLGTYRQN----GKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLHIYLNSLALLLFAWQA 165 (175)
T ss_pred HHHHHHHHHHcchHHHHHcC----CCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777665555442 34333558887777777766666655444432222345689999999999999999
Q ss_pred hhhh
Q 021436 301 TKAL 304 (312)
Q Consensus 301 ~~g~ 304 (312)
+.|+
T Consensus 166 itG~ 169 (175)
T PF13301_consen 166 ITGW 169 (175)
T ss_pred HHHH
Confidence 9885
No 33
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=82.36 E-value=8.7 Score=33.28 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=65.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcc--cc-C---CCCCcC
Q 021436 210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG--SD-S---KGVTYT 283 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~--~~-~---~~~~~~ 283 (312)
...+..|.++..+|..+. -+|+..+=-++... +.+.-..+|-.+=+.++++..+=++.|+... .. + +....-
T Consensus 68 ~~~K~~H~~L~~~Al~~~-vvGl~avf~~hn~~-~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p 145 (179)
T cd08762 68 LPWKLLHAGLLLLAFILT-VIGLCAVFNFHNVH-HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKP 145 (179)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHhcccc-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhH
Confidence 446799999999998654 45544432233322 3455557899999998888877777776532 11 1 111234
Q ss_pred ChhhhHHHHHHHHHHHHhhhhhc
Q 021436 284 GHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 284 ~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
.|...|++++++++....+|+..
T Consensus 146 ~H~~~G~~if~Laiat~~lGl~e 168 (179)
T cd08762 146 IHVFFGAMILVLSIASCISGINE 168 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999864
No 34
>PLN02810 carbon-monoxide oxygenase
Probab=78.31 E-value=10 Score=34.16 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=67.2
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhc--ccc-C---CCCCc
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKL--GSD-S---KGVTY 282 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~--~~~-~---~~~~~ 282 (312)
+..++..|.++..+|..+- -+|+..+=-++... +.|.-..+|-.+=+.++++...=++.|+.. ... + +....
T Consensus 76 k~~~K~iH~~lh~~Al~l~-vvGl~Avf~~Hn~~-~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~l 153 (231)
T PLN02810 76 KEVKKLIHLVLHAIALILG-IFGICAAFKNHNES-GIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSL 153 (231)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHhcccc-CCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHh
Confidence 3557899999999998654 45544432233322 356667899999999988888888888743 211 1 11123
Q ss_pred CChhhhHHHHHHHHHHHHhhhhhc
Q 021436 283 TGHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 283 ~~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
-.|...|+.++++++....+|+..
T Consensus 154 P~Hv~~Gl~if~LAiata~lGi~E 177 (231)
T PLN02810 154 PWHVLFGLFVYILAVGNAALGFLE 177 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999864
No 35
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=75.23 E-value=7.6 Score=33.71 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhccccCC-----CCCcCChhhhHHHHHHHHHHHHhhhhhccCCC
Q 021436 259 AYAIGVAGWGTGLKLGSDSK-----GVTYTGHRNIGIALFSLATVQVTKALVVHDIN 310 (312)
Q Consensus 259 ~~~~~i~g~~lg~~~~~~~~-----~~~~~~H~~lG~~v~~l~~~Q~~~g~~r~~~~ 310 (312)
..++.++-+++|.......+ ....+.|+.+|+.+.+|+++-.+..+.-|.|.
T Consensus 19 ~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p~ 75 (181)
T COG3038 19 MALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAPP 75 (181)
T ss_pred HHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34444444555544433222 12346888999988888888888777776664
No 36
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=73.98 E-value=16 Score=33.06 Aligned_cols=95 Identities=20% Similarity=0.207 Sum_probs=61.4
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcc--ccCC----CCCc
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG--SDSK----GVTY 282 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~--~~~~----~~~~ 282 (312)
....+.+|+.|-++|..+.+ +| +.+-+.-+-..+.+.-..+|-.+-+..+.+-.+=++.|+... .... ...-
T Consensus 85 k~~~KliH~~LH~~Alvl~i-~g-l~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lm 162 (245)
T KOG1619|consen 85 KKVSKLIHLGLHIIALVLAI-IG-LCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLM 162 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhh
Confidence 34567899999998875432 22 222221111112244458999998888888777777776632 2111 1123
Q ss_pred CChhhhHHHHHHHHHHHHhhhhh
Q 021436 283 TGHRNIGIALFSLATVQVTKALV 305 (312)
Q Consensus 283 ~~H~~lG~~v~~l~~~Q~~~g~~ 305 (312)
--|.-+|+.+++++++|..+|++
T Consensus 163 P~H~~~Gl~~f~lai~ta~~Gl~ 185 (245)
T KOG1619|consen 163 PWHVFLGLAIFILAIVTALTGLL 185 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999984
No 37
>PLN02351 cytochromes b561 family protein
Probab=72.31 E-value=22 Score=32.24 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=65.8
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcc--ccC----CCCCc
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG--SDS----KGVTY 282 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~--~~~----~~~~~ 282 (312)
+...+.+|.++..+|..+. -+|+.. .+ ..-.+..|.-..+|-.+=+.++++..+=++.|+... ... +....
T Consensus 80 ~k~~K~lH~~Lh~~Ali~~-vvGl~a-~f-h~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~ 156 (242)
T PLN02351 80 RKTKKSVHLWLQGLALASG-VFGIWT-KF-HGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVL 156 (242)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHH-HH-hcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHh
Confidence 3457899999999998775 566554 32 221112355668999999999888887777776532 111 11112
Q ss_pred CChhhhHHHHHHHHHHHHhhhhhc
Q 021436 283 TGHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 283 ~~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
-.|...|++++++++.-..+|+..
T Consensus 157 P~Hv~~Gl~if~LaiaTa~lGl~E 180 (242)
T PLN02351 157 PWHVFLGLYTYGLAVATAETGLLE 180 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999998764
No 38
>PRK11513 cytochrome b561; Provisional
Probab=71.44 E-value=6.2 Score=33.95 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=12.7
Q ss_pred ChhhhHHHHHHHHHHHHhhhhhccCC
Q 021436 284 GHRNIGIALFSLATVQVTKALVVHDI 309 (312)
Q Consensus 284 ~H~~lG~~v~~l~~~Q~~~g~~r~~~ 309 (312)
.|..+|+++++++++-.+..+.++.|
T Consensus 44 ~H~s~G~~vl~L~v~Rl~~r~~~~~P 69 (176)
T PRK11513 44 IHVSCGISILVLMVVRLLLRLKYPTP 69 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35555555555555555544444433
No 39
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=70.89 E-value=43 Score=28.87 Aligned_cols=53 Identities=15% Similarity=-0.004 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhc-cccCCCCCcCChhhhHHHHHHHHHHHHhh
Q 021436 250 YLHVLCQSSAYAIGVAGWGTGLKL-GSDSKGVTYTGHRNIGIALFSLATVQVTK 302 (312)
Q Consensus 250 ~~H~~~q~~~~~~~i~g~~lg~~~-~~~~~~~~~~~H~~lG~~v~~l~~~Q~~~ 302 (312)
..|.-.-...++++..|..-|..- ..+.+..+.++|-..|++++.|+.++..+
T Consensus 81 ~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al 134 (175)
T PF13301_consen 81 DRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAAL 134 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHH
Confidence 566665555555544444444321 22222356789999999999999988754
No 40
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=63.34 E-value=56 Score=32.86 Aligned_cols=61 Identities=8% Similarity=-0.059 Sum_probs=38.1
Q ss_pred ccchhhhhhHHHHHHHHHH-HHHHH---HHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHh
Q 021436 209 RTKKRNIHGVLNAVSWGIL-FPIGA---IIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGT 269 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l-~P~g~---~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l 269 (312)
-.+++..||.+|++.|..- +..|. ++.|.++.-.-..|++=.++..+..++.++.+.++..
T Consensus 45 y~~~~t~Hg~~mif~~~~p~~~~g~~~~lvP~~~g~~dl~~prln~~s~wl~~~g~~l~~~s~~~ 109 (488)
T cd01663 45 YNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALV 109 (488)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3468899999999999873 33332 2344443110012343356777888888887777765
No 41
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=62.77 E-value=35 Score=26.67 Aligned_cols=52 Identities=15% Similarity=0.417 Sum_probs=33.1
Q ss_pred cchhhhhhHHHHHHHHHHHHH--HHHHHHhhhc-ccCCCchhhhhhHHHHHHHHHHHHHHHHhhhh
Q 021436 210 TKKRNIHGVLNAVSWGILFPI--GAIIARYLRT-FESADPAWFYLHVLCQSSAYAIGVAGWGTGLK 272 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~--g~~~aR~~k~-~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~ 272 (312)
......=|.+-.++|-+..|+ |+++.||+-. ++ .++.| .+++.++|+++|+.
T Consensus 36 ~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~-t~~~~----------tl~~lllGv~~G~~ 90 (100)
T TIGR02230 36 RSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYP-SPFSW----------TLTMLIVGVVIGCL 90 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCcHH----------HHHHHHHHHHHHHH
Confidence 345666688889999888886 5677888854 43 23433 33455556666544
No 42
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=59.06 E-value=77 Score=26.48 Aligned_cols=94 Identities=18% Similarity=0.066 Sum_probs=56.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH---hhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhc---------------
Q 021436 212 KRNIHGVLNAVSWGILFPIGAIIAR---YLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKL--------------- 273 (312)
Q Consensus 212 ~~~~Hg~lm~iaw~~l~P~g~~~aR---~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~--------------- 273 (312)
.+..|- ++++.+.+++..|..+.. ...........++.+|..+-.+-+++.+.=++..+.-
T Consensus 8 ~R~~Hw-~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 8 TRLLHW-LNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 456675 678889999999987652 2222222456778999998666555544433333332
Q ss_pred ---cc-----cCCCCCcCChhhhHHHHHHHHHHHHhhhhhc
Q 021436 274 ---GS-----DSKGVTYTGHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 274 ---~~-----~~~~~~~~~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
.. ...+..+...+..-+++..+.+++++-|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0112234466777777778889999988876
No 43
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=52.89 E-value=19 Score=30.32 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhh----ccccC-CCCCcCChhhhHHHHHHHHHHHHhhhhhc
Q 021436 250 YLHVLCQSSAYAIGVAGWGTGLK----LGSDS-KGVTYTGHRNIGIALFSLATVQVTKALVV 306 (312)
Q Consensus 250 ~~H~~~q~~~~~~~i~g~~lg~~----~~~~~-~~~~~~~H~~lG~~v~~l~~~Q~~~g~~r 306 (312)
.+|+..=++-+++.+.|+.+... ..... .......|..+|++.+++.++..+.++.+
T Consensus 10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46776655555555567666422 11111 11235689999999999999999988888
No 44
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=52.24 E-value=18 Score=28.98 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 021436 216 HGVLNAVSWGILFPIGAIIARY 237 (312)
Q Consensus 216 Hg~lm~iaw~~l~P~g~~~aR~ 237 (312)
--++|+++|+++.|+|..+.-|
T Consensus 11 ~Ia~mVlGFi~fWPlGla~Lay 32 (115)
T PF11014_consen 11 WIAAMVLGFIVFWPLGLALLAY 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999876554
No 45
>COG4244 Predicted membrane protein [Function unknown]
Probab=50.77 E-value=44 Score=28.39 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=28.0
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHhhhh---cccc--CCCCCcCChhhhHHHHHH
Q 021436 245 DPAWFYLHVLCQSSAYAIGVAGWGTGLK---LGSD--SKGVTYTGHRNIGIALFS 294 (312)
Q Consensus 245 ~~~Wf~~H~~~q~~~~~~~i~g~~lg~~---~~~~--~~~~~~~~H~~lG~~v~~ 294 (312)
+..||..=+.....+.+.+.+..+.|+. +.++ .......-|..+|.++.+
T Consensus 44 ~~~~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~~~a~~~a~wh~~lG~il~~ 98 (160)
T COG4244 44 KDRWFDVSWWNLFAALIAGFFAVIAGLFEFLLARPGGAAKQAAEWHHVLGNILLI 98 (160)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHH
Confidence 4567777777777776666655555543 2222 001123457777777665
No 46
>COG2717 Predicted membrane protein [Function unknown]
Probab=48.61 E-value=34 Score=30.38 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=31.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHH
Q 021436 212 KRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLC 255 (312)
Q Consensus 212 ~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~ 255 (312)
....=..+-++||++++|+++-.-++.+.- -+..|.++|+..
T Consensus 112 ~~rpyitiG~iaflll~pLalTS~k~~~rr--lG~rW~~LHrLv 153 (209)
T COG2717 112 LKRPYITIGMIAFLLLIPLALTSFKWVRRR--LGKRWKKLHRLV 153 (209)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHH
Confidence 344456777899999999998876665531 137999999973
No 47
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=44.56 E-value=42 Score=29.15 Aligned_cols=61 Identities=20% Similarity=-0.041 Sum_probs=41.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHHhhhhhccCC
Q 021436 247 AWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDI 309 (312)
Q Consensus 247 ~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~~~g~~r~~~ 309 (312)
.|++--.++=..+.++.++-|++|+...... ..+..-+++|.+++.++++|+..-+..|.|
T Consensus 78 ~~~~aaAAmL~~g~~i~~I~filgl~~~cv~--~~~~fyRvi~~~l~laaV~qi~sLvIyPVk 138 (201)
T KOG4671|consen 78 DGGRAAAAMLFIGAAILVICFILGLFALCVP--LKLVFYRVIGGLLFLAAVLQIISLVIYPVK 138 (201)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ceEEeeeHHHHHHHHHHHHHhheeEEeeee
Confidence 4555555555556667777788887754422 224567899999999999998766666554
No 48
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=44.54 E-value=1.8e+02 Score=29.28 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=39.4
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHH---HHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhh
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAI---IARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGL 271 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~---~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~ 271 (312)
-.+.+.+|+.+|+++|....=+|.. +.|..|.- -..|.+-++...+-.++.+++++++..|.
T Consensus 86 f~~~rt~H~~~~if~w~~~~~~g~~~ylvp~~~g~~-l~~~~l~~~~~w~~~~g~~l~~~~~~~G~ 150 (493)
T cd01661 86 FGRLRPLHTNAVIFGFGGNALIATSFYVVQRTCRAR-LAGGNLAWFVFWGYNLFIVLAATGYLLGI 150 (493)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3478999999999999987666643 34555421 12344434555555666666777776663
No 49
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=44.05 E-value=70 Score=25.06 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCCchhhhhhHHHHHHHHHHHH-HHHHhhhh
Q 021436 243 SADPAWFYLHVLCQSSAYAIGV-AGWGTGLK 272 (312)
Q Consensus 243 ~~~~~Wf~~H~~~q~~~~~~~i-~g~~lg~~ 272 (312)
++.+...+.|..+|.+++++.. +|++++..
T Consensus 12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~ 42 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWVILYPIGLVLGNA 42 (105)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3467789999999999988654 66666544
No 50
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=42.82 E-value=27 Score=21.88 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=14.7
Q ss_pred CChhhhHHHHHHHHHHHHhhh
Q 021436 283 TGHRNIGIALFSLATVQVTKA 303 (312)
Q Consensus 283 ~~H~~lG~~v~~l~~~Q~~~g 303 (312)
..|+++|+++..+.++-.+.|
T Consensus 6 ~~H~W~Gl~~g~~l~~~~~tG 26 (37)
T PF13706_consen 6 KLHRWLGLILGLLLFVIFLTG 26 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 468888887777666666544
No 51
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=42.43 E-value=1.1e+02 Score=25.24 Aligned_cols=56 Identities=18% Similarity=-0.081 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHHhhhhhccCCCC
Q 021436 249 FYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDINL 311 (312)
Q Consensus 249 f~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~~~g~~r~~~~~ 311 (312)
+..|...|....++.....++-+ .. . ...|+.....+..+.+.+-+.-..|+++++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~ll--~~----l-l~~~P~~~~l~v~l~~~~~f~~~~~~~~~l 96 (140)
T PF11168_consen 41 PPLKMLLQLLLVALLTALEGLLL--SG----L-LQDYPVVMLLLVFLLFFWSFYRMSRGPKFL 96 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HH----H-HhcCCHHHHHHHHHHHHHHHHHHhCCCchH
Confidence 38899999887766554433221 21 1 234888888888888888888888887764
No 52
>COG3698 Predicted periplasmic protein [Function unknown]
Probab=40.14 E-value=33 Score=30.69 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHhhcccccCC-CCccccccccccccccccCCCCCe-EEEEEE
Q 021436 8 RSIVLGLSLWFLLISPALSLT-CTSQSKNLKNEIYAHCLDLPSLSS-FLHFTY 58 (312)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~-C~~~~~~~~~~~~~~C~~l~~~~~-~l~W~~ 58 (312)
-.+.+.++++...+.++.++. |....+ +...|..|..-|..+. .|+|.-
T Consensus 7 ~~~~l~l~~la~~~~pa~~~p~c~~~~~--~g~~ytvctvDP~~~~irlywkd 57 (250)
T COG3698 7 IALPLALAFLAGSAQPAFAVPDCCAIRF--AGLTYTVCTVDPATDSIRLYWKD 57 (250)
T ss_pred hHHHHHHHHHHhhhchhhCCCchhhccC--CceEEEEEEecCcccceEEEecC
Confidence 345555655555556666655 887666 3578999999888754 799983
No 53
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=39.98 E-value=2.2e+02 Score=23.65 Aligned_cols=93 Identities=19% Similarity=0.118 Sum_probs=45.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchh--hhhhHHHHHHHHHHHHHHHHhh------------------h
Q 021436 212 KRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAW--FYLHVLCQSSAYAIGVAGWGTG------------------L 271 (312)
Q Consensus 212 ~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~W--f~~H~~~q~~~~~~~i~g~~lg------------------~ 271 (312)
.+..|- ++++++++++..|..+..-.+... ....+ +.+|..+-.+-.++.+.=+... +
T Consensus 6 ~r~~HW-~~a~~~i~l~~tG~~~~~~~~~~~-~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
T PF01292_consen 6 TRILHW-LNALSFIALIATGLWIHFPPPGLY-FGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYL 83 (182)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhccccccc-ccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 345564 456677777778866522211111 11122 6789886555444443322222 0
Q ss_pred --hccccCC-CCCcCChhh-hHHHHHHHHHHHHhhhhhc
Q 021436 272 --KLGSDSK-GVTYTGHRN-IGIALFSLATVQVTKALVV 306 (312)
Q Consensus 272 --~~~~~~~-~~~~~~H~~-lG~~v~~l~~~Q~~~g~~r 306 (312)
....+.+ ...+++-++ .-.++.++.+++++.|++-
T Consensus 84 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~ 122 (182)
T PF01292_consen 84 YFLLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLL 122 (182)
T ss_pred HHHhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 112333333 4666667888888888764
No 54
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=38.93 E-value=2.6e+02 Score=24.25 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=48.3
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccc
Q 021436 208 SRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGS 275 (312)
Q Consensus 208 ~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~ 275 (312)
...+....|-..+.++.+.+.=.++....|+.. +++.+-.+-..+-.+++++..+|++.|-..++
T Consensus 8 ~~~ri~yiHVp~a~~~~~~~~~~~~~s~~yL~~---~~~~~D~la~~~a~iGf~f~tl~LitGaiWak 72 (184)
T TIGR01191 8 ASVRIMYVHVPAAWMAIGVYIMMAIASFIFLVW---KHPLSDLAAKAAAPIGAVFTLIALVTGSLWGK 72 (184)
T ss_pred cceeehhhHHHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999988877777777777753 24556566666667888999899998876554
No 55
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=38.87 E-value=2.2e+02 Score=23.36 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHHhhhh
Q 021436 251 LHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKAL 304 (312)
Q Consensus 251 ~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~~~g~ 304 (312)
.|..+-++++.+.+..+..|+.- ..+.|+++|-..+.+.+.-.+.|+
T Consensus 80 ~Hi~LA~~~~pL~l~tl~~a~~~-------~~~~Hrki~r~t~piWlyvsvTGv 126 (133)
T PF04238_consen 80 SHIILAIVALPLVLYTLYRALRG-------RFTRHRKIGRWTFPIWLYVSVTGV 126 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444322 134577777666665555444443
No 56
>TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115.
Probab=38.12 E-value=2e+02 Score=29.02 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=35.4
Q ss_pred cchhhhhhHHHHHHHHHHHHHH--H-HHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhh
Q 021436 210 TKKRNIHGVLNAVSWGILFPIG--A-IIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTG 270 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g--~-~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg 270 (312)
.+.+.+||.+|++.|..-+-.| . ++.|.++.-.-..|++=.+...+...++++.++++..|
T Consensus 50 ~~~~T~Hg~~mif~~~~p~~~g~~~~lvp~~lg~~dl~~prln~~sfwl~~~~~~l~~~s~~~g 113 (506)
T TIGR02891 50 NQLFTMHGTIMIFLFAVPILAGFGNYLLPLMIGARDMAFPRLNAFSYWLYLFGGLLLLASFFTG 113 (506)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHHHHHHHHHhccC
Confidence 4688999999999997663322 2 22343321000123333555666667777776666554
No 57
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=34.57 E-value=2.5e+02 Score=24.01 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=8.9
Q ss_pred HHHHHHHhhhhhccCCC
Q 021436 294 SLATVQVTKALVVHDIN 310 (312)
Q Consensus 294 ~l~~~Q~~~g~~r~~~~ 310 (312)
++.++=+++|++-|.+.
T Consensus 78 ~l~~iPll~g~l~p~~~ 94 (182)
T PF09323_consen 78 FLFLIPLLIGFLFPPAS 94 (182)
T ss_pred HHHHHHHHHHHcCCCcC
Confidence 33444445666666554
No 58
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=33.74 E-value=47 Score=20.24 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=10.1
Q ss_pred ChhhhHHHHHHHHHHHHhhh
Q 021436 284 GHRNIGIALFSLATVQVTKA 303 (312)
Q Consensus 284 ~H~~lG~~v~~l~~~Q~~~g 303 (312)
.|..+|++..+..++..+-|
T Consensus 8 ~H~~~g~~~~~~ll~~~lTG 27 (34)
T PF13172_consen 8 IHRWLGLIAAIFLLLLALTG 27 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444433
No 59
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=33.21 E-value=1.6e+02 Score=28.14 Aligned_cols=41 Identities=17% Similarity=-0.030 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhHHHHHHH
Q 021436 255 CQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIGIALFSL 295 (312)
Q Consensus 255 ~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG~~v~~l 295 (312)
.|.+++++.++|+++-.......+ +.....|+++|-+++++
T Consensus 134 ~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~ 175 (334)
T PF06027_consen 134 FHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALL 175 (334)
T ss_pred HHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHH
Confidence 467899999999776333211111 11245799999877763
No 60
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=32.95 E-value=1.8e+02 Score=26.15 Aligned_cols=18 Identities=33% Similarity=0.746 Sum_probs=13.8
Q ss_pred CCCeEEEEEEeccCCCCceEEEE
Q 021436 61 SNRSLSIAFVAAPAKSGGWIAWA 83 (312)
Q Consensus 61 ~~~~~~i~f~~~~~~~~gWVAiG 83 (312)
++..+|++++. +||+++=
T Consensus 74 TgR~LDvaiq~-----DGwlaVq 91 (251)
T COG4787 74 TGRPLDVAIQG-----DGWLAVQ 91 (251)
T ss_pred cCCcceEEEcc-----CceEEEE
Confidence 45677887774 6999997
No 61
>CHL00045 ccsA cytochrome c biogenesis protein
Probab=32.77 E-value=99 Score=29.26 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=25.4
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHhhhhc
Q 021436 245 DPAWFYLHVLCQSSAYAIGVAGWGTGLKL 273 (312)
Q Consensus 245 ~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~ 273 (312)
+..|+.+|+.+.++++.+..+|++.++.+
T Consensus 133 ~s~wL~iHV~~~~lsYa~f~la~~~a~ly 161 (319)
T CHL00045 133 QSNWLMMHVSMMILSYAALLCGSLLSIAL 161 (319)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999988664
No 62
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=32.23 E-value=1.2e+02 Score=26.29 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.0
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHhhhhc
Q 021436 245 DPAWFYLHVLCQSSAYAIGVAGWGTGLKL 273 (312)
Q Consensus 245 ~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~ 273 (312)
...|+.+|+.+-.+++....++++.++.+
T Consensus 68 ~~~~l~iHv~~~~~~ya~~~ia~~~al~~ 96 (214)
T PF01578_consen 68 QSPWLYIHVPLALLGYAAFAIAALAALLY 96 (214)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999998888887664
No 63
>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].
Probab=32.03 E-value=89 Score=26.87 Aligned_cols=56 Identities=11% Similarity=-0.056 Sum_probs=40.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhh-h-cccCCCchhhhhhHHHHHHHHHHHHHHHHh
Q 021436 212 KRNIHGVLNAVSWGILFPIGAIIARYL-R-TFESADPAWFYLHVLCQSSAYAIGVAGWGT 269 (312)
Q Consensus 212 ~~~~Hg~lm~iaw~~l~P~g~~~aR~~-k-~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l 269 (312)
..++=.++|.++++++.=...+..-.+ + .. .++..|++...+|.++.++.++|.++
T Consensus 69 ~Wkaa~~~~~~g~~Ll~~~~~~~L~~~c~~~~--~~~sv~~i~g~~Q~~A~l~~~~g~~~ 126 (181)
T PF10242_consen 69 AWKAAAFFVGIGCVLLLLIALLSLFSCCFRSI--CSRSVFKICGWLQFVAGLCLLLGCLL 126 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCceEeeechHHHHHHHHHHHHhhee
Confidence 467778999999998766665542222 2 22 23567899999999999988888774
No 64
>PRK14488 cbb3-type cytochrome c oxidase subunit I; Provisional
Probab=31.76 E-value=3.7e+02 Score=26.88 Aligned_cols=62 Identities=8% Similarity=0.001 Sum_probs=36.1
Q ss_pred ccchhhhhhHHHHHHHHHHHHHH--H-HHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhh
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIG--A-IIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGL 271 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g--~-~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~ 271 (312)
-.+.+..|+.+|.+.|..-.=+| . ++.|..+.- ...|.+=.+...+-..+.++.++++..|.
T Consensus 52 fn~~rt~H~~~mif~~~~~~~~g~~~ylvP~~~g~~-~~~prL~~~~fwl~~~~~~~~~~~~~~G~ 116 (473)
T PRK14488 52 FGRLRPLHTNAVIFAFGGSALFATSYYVVQRTCQAR-LFSDFLAWFTFWGWQLVIVLAAITLPLGY 116 (473)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45789999999999998643344 2 234554421 12333334455555556666666665553
No 65
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=31.75 E-value=1.8e+02 Score=20.19 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc---c-cCCCchhhhhhHHHHHHHHH
Q 021436 218 VLNAVSWGILFPIGAIIARYLRT---F-ESADPAWFYLHVLCQSSAYA 261 (312)
Q Consensus 218 ~lm~iaw~~l~P~g~~~aR~~k~---~-~~~~~~Wf~~H~~~q~~~~~ 261 (312)
.++.+++.+++=.|+++.+.... + ...++.|-.+|...-...++
T Consensus 7 ~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~ 54 (64)
T PF14358_consen 7 LLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLI 54 (64)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHH
Confidence 46677777777778777554322 1 11235677777765444333
No 66
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=30.31 E-value=1.1e+02 Score=28.34 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=15.4
Q ss_pred CChhhhHHHHHHHHHHHHhhhhh
Q 021436 283 TGHRNIGIALFSLATVQVTKALV 305 (312)
Q Consensus 283 ~~H~~lG~~v~~l~~~Q~~~g~~ 305 (312)
...+..+..++++.++|+++|+.
T Consensus 254 ~~~~~~~~~~~~ll~~Qv~lGi~ 276 (302)
T PF02628_consen 254 RALRRLAVLLLALLLLQVLLGIL 276 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777654
No 67
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=30.09 E-value=2e+02 Score=23.39 Aligned_cols=69 Identities=14% Similarity=0.046 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcc--cCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHHhhhh
Q 021436 229 PIGAIIARYLRTF--ESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKAL 304 (312)
Q Consensus 229 P~g~~~aR~~k~~--~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~~~g~ 304 (312)
|.+.+.-|++|+. +..+..=-.-|+.-|.+++++..++++.- .++ . ...=.++..++.+++.++...|+
T Consensus 48 P~~~~~~~~l~~~~~~~~~~e~~~pkRFAq~iG~~f~~~~~~~~-~~g-----~-~~~~~i~~~~~~~aA~le~~fGf 118 (131)
T PF14340_consen 48 PFGLLARRLLRPRLGPPPELEDAAPKRFAQGIGLVFLGVALVAF-LLG-----W-PVAGYILAAILLVAAFLEAAFGF 118 (131)
T ss_pred hHHHHHHHHhhhccCCCCCCCCCcchhHHHHHHHHHHHHHHHHH-Hhc-----h-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555555666542 11111112678999999999988777652 221 1 11223344445556666666554
No 68
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=29.88 E-value=2e+02 Score=20.18 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHh
Q 021436 219 LNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGT 269 (312)
Q Consensus 219 lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l 269 (312)
+-+++.+++.-+-+.++|| |. +..|++ ...-.+|+++.++|..+
T Consensus 6 ~~~iglMfisv~~i~~sR~-Kl----k~~~lk--~i~~~vAy~lli~~gli 49 (58)
T PF10966_consen 6 FGAIGLMFISVILIYFSRY-KL----KGKFLK--FIVSLVAYILLIVSGLI 49 (58)
T ss_pred HHHHHHHHHHHHHHHHHHH-HH----hChHHH--HHHHHHHHHHHHHHHHh
Confidence 4456666666666778887 32 234655 45556788877765444
No 69
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=28.41 E-value=1.4e+02 Score=22.94 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhh-cccCCCchhhhhhHHHH
Q 021436 221 AVSWGILFPIGAIIARYLR-TFESADPAWFYLHVLCQ 256 (312)
Q Consensus 221 ~iaw~~l~P~g~~~aR~~k-~~~~~~~~Wf~~H~~~q 256 (312)
.+++.++.++.+...++.| +. .-+.|.++|..+-
T Consensus 84 ~~a~~~l~~l~~tS~~~~R~r~--~ye~f~~~H~~~~ 118 (125)
T PF01794_consen 84 IIALLLLLILAVTSFPWIRRRR--NYEIFYYLHILFY 118 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHH
Confidence 3344445555554444444 22 1357888888753
No 70
>cd01660 ba3-like_Oxidase_I ba3-like heme-copper oxidase subunit I. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively. For general information on the heme-copper oxidase superfamily, please see cd00919.
Probab=27.80 E-value=1.8e+02 Score=29.02 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=34.4
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHH---HHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhh
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAI---IARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTG 270 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~---~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg 270 (312)
-.+.+..||.+|.+.|...+=.|.. +.|..++ +-..|++-.+...+..++.++.+.++..|
T Consensus 44 y~~~~t~Hg~~mif~~~~~~~~g~~~y~vp~~~~~-~~~~prl~~~s~wl~~~g~~l~~~s~~~g 107 (473)
T cd01660 44 YYQGLTLHGVLLAIVFTTFFIMGFFYAIVARALLR-SLFNRRLAWAGFWLMVIGTVMAAVPILLG 107 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999999888764433421 1231111 11133444555556666766666665544
No 71
>COG3658 Cytochrome b [Energy production and conversion]
Probab=27.05 E-value=97 Score=26.56 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.0
Q ss_pred CChhhhHHHHHHHHHHHHhhhhhccC
Q 021436 283 TGHRNIGIALFSLATVQVTKALVVHD 308 (312)
Q Consensus 283 ~~H~~lG~~v~~l~~~Q~~~g~~r~~ 308 (312)
..|..+|++++++..+-..-|+.-|.
T Consensus 35 ~~H~wvGyav~allalRL~WG~igs~ 60 (192)
T COG3658 35 QLHTWVGYAVLALLALRLCWGIIGSD 60 (192)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccccc
Confidence 58999999999999998888776554
No 72
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=26.98 E-value=1.3e+02 Score=23.95 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=6.0
Q ss_pred cCChhhhHHHHHHH
Q 021436 282 YTGHRNIGIALFSL 295 (312)
Q Consensus 282 ~~~H~~lG~~v~~l 295 (312)
+..+-+.++++.++
T Consensus 79 ~~~~~iFt~~i~vi 92 (111)
T COG3125 79 NMGALIFTIFIIVI 92 (111)
T ss_pred ehHHHHHHHHHHHH
Confidence 33444444444443
No 73
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=26.94 E-value=88 Score=25.13 Aligned_cols=43 Identities=14% Similarity=-0.020 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHH
Q 021436 250 YLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFS 294 (312)
Q Consensus 250 ~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~ 294 (312)
.+|..+-..-++..+..++|.+.+-+ . +..-+.|..|-...++
T Consensus 59 p~~iffavcI~l~~~s~~lLI~WYR~-g-dl~Pkfr~li~~~~~~ 101 (118)
T PF10856_consen 59 PLHIFFAVCILLICISAILLIFWYRQ-G-DLDPKFRYLIYYNCFS 101 (118)
T ss_pred ceEEehHHHHHHHHHHHHhheeehhc-C-CCChhHHHHHHHHHHH
Confidence 35555433333333334444433332 2 2323345544444443
No 74
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=26.85 E-value=1.3e+02 Score=26.01 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=11.1
Q ss_pred ChhhhHHHHHHHHHHHHhhhh
Q 021436 284 GHRNIGIALFSLATVQVTKAL 304 (312)
Q Consensus 284 ~H~~lG~~v~~l~~~Q~~~g~ 304 (312)
.|..+|++++++.++=.+.++
T Consensus 51 ~H~~~G~~~~~l~l~rl~~~~ 71 (211)
T TIGR02125 51 VHFAAGFVLIAVLLFRVYLAF 71 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666655555554444443
No 75
>cd01662 Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges co
Probab=26.44 E-value=2e+02 Score=29.07 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=35.4
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHH--H-HHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhh
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGAI--I-ARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTG 270 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~~--~-aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg 270 (312)
-.+.+.+||..|++.|..-.-.|.. + -|.++.-.-..|++=.+...+..+++++.+.++..|
T Consensus 49 Y~~~~T~Hg~~mif~~~~p~~~gf~~ylvp~~lg~~dl~~prln~~sfWl~~~~~~l~~~s~~~g 113 (501)
T cd01662 49 YNQIFTMHGTIMIFLFAMPLVFGLMNYLVPLQIGARDVAFPRLNALSFWLFLFGGLLLNASLLIG 113 (501)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3478899999999999766555521 1 222221000122333455556667777776666554
No 76
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=25.78 E-value=3.1e+02 Score=24.09 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-ccCCCchhhhhhHH
Q 021436 220 NAVSWGILFPIGAIIARYLRT-FESADPAWFYLHVL 254 (312)
Q Consensus 220 m~iaw~~l~P~g~~~aR~~k~-~~~~~~~Wf~~H~~ 254 (312)
-.+||.+++|+++...+..+. .+ ..|-++|..
T Consensus 120 G~ia~~lLl~LaiTS~~~~~rrLg---~~Wk~LH~l 152 (205)
T PRK05419 120 GMAAFLILLPLALTSTRASQRRLG---KRWQKLHRL 152 (205)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHH
Confidence 567999999999988776653 32 389999976
No 77
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.35 E-value=2.9e+02 Score=23.61 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=10.4
Q ss_pred ChhhhHHHHHHHHHHHHhhhhhccCC
Q 021436 284 GHRNIGIALFSLATVQVTKALVVHDI 309 (312)
Q Consensus 284 ~H~~lG~~v~~l~~~Q~~~g~~r~~~ 309 (312)
.|-.++=+++.+++.=.++-.+|.+|
T Consensus 49 f~~NllGVil~~~~~~~~l~~~k~~p 74 (165)
T PF11286_consen 49 FHWNLLGVILGLLLTSALLRQLKTHP 74 (165)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHccCh
Confidence 44443333333333333333444443
No 78
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=25.10 E-value=2.5e+02 Score=27.43 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=33.4
Q ss_pred chhhhhhHHHHHHHHH---HHHHHHHhhhhcc--ccC-C--CCCcCChhhhHHHHHHHHHHHHhh
Q 021436 246 PAWFYLHVLCQSSAYA---IGVAGWGTGLKLG--SDS-K--GVTYTGHRNIGIALFSLATVQVTK 302 (312)
Q Consensus 246 ~~Wf~~H~~~q~~~~~---~~i~g~~lg~~~~--~~~-~--~~~~~~H~~lG~~v~~l~~~Q~~~ 302 (312)
..|-+.-...|.++++ ++..-+.++..+. ++. + +..+..|+..||..++|.++..+.
T Consensus 32 ~~~s~~~~~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~GlD~~Y~~HK~~sIlailL~l~H~~~ 96 (438)
T COG4097 32 NLLSWRLEFSQFLGFIALALMSLIFLLATRLPLIEAWFNGLDKIYRFHKYTSILAILLLLAHNFI 96 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677766522 2222333332221 111 1 345789999999999999988875
No 79
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=24.73 E-value=72 Score=18.62 Aligned_cols=23 Identities=17% Similarity=-0.042 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHhhhhhccCC
Q 021436 287 NIGIALFSLATVQVTKALVVHDI 309 (312)
Q Consensus 287 ~lG~~v~~l~~~Q~~~g~~r~~~ 309 (312)
++|.++.+..++=.+..++||.+
T Consensus 1 ii~~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 1 IILLVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred CHHHHHHHHHHHHHHHHHhCHHh
Confidence 35666666666666777777754
No 80
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=24.32 E-value=93 Score=24.53 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=21.0
Q ss_pred ChhhhHHHHHHHHHHHHhhhhhccCCCC
Q 021436 284 GHRNIGIALFSLATVQVTKALVVHDINL 311 (312)
Q Consensus 284 ~H~~lG~~v~~l~~~Q~~~g~~r~~~~~ 311 (312)
..-.+|++++ ++++||++++++..+++
T Consensus 33 vr~v~Gl~Li-~~il~Pi~~l~~~~~~~ 59 (106)
T TIGR02896 33 VKFVVGLILM-VVILNPIIKLLTTDPNI 59 (106)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhCCChhH
Confidence 5677888554 78899999999987653
No 81
>cd00919 Heme_Cu_Oxidase_I Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from
Probab=23.42 E-value=2.1e+02 Score=28.30 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHH
Q 021436 210 TKKRNIHGVLNAVSWGILFPIGAII 234 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g~~~ 234 (312)
+..+..||.+|++.|++..-+|.+.
T Consensus 44 ~~~~t~Hg~~mi~~~~~~~~~gg~~ 68 (463)
T cd00919 44 NQLVTAHGVIMIFFFVMPAIFGGFG 68 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999988877654
No 82
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=23.15 E-value=1.1e+02 Score=18.27 Aligned_cols=23 Identities=17% Similarity=0.018 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHhhhhhccCC
Q 021436 287 NIGIALFSLATVQVTKALVVHDI 309 (312)
Q Consensus 287 ~lG~~v~~l~~~Q~~~g~~r~~~ 309 (312)
++|.++.+..++=.+..++||.+
T Consensus 6 ~l~~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 6 SLAGAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHHhCccc
Confidence 46666666666677777788764
No 83
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=22.22 E-value=1.2e+02 Score=17.42 Aligned_cols=23 Identities=17% Similarity=-0.000 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHhhhhhccCC
Q 021436 287 NIGIALFSLATVQVTKALVVHDI 309 (312)
Q Consensus 287 ~lG~~v~~l~~~Q~~~g~~r~~~ 309 (312)
++|.++.+..++=.+..++||.+
T Consensus 2 ~l~~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 2 ILGGIVAVALFVYLFYALLRPER 24 (25)
T ss_pred hHHHHHHHHHHHHHHHHHhCccc
Confidence 34555555555566666777754
No 84
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.93 E-value=88 Score=23.66 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccc
Q 021436 254 LCQSSAYAIGVAGWGTGLKLGS 275 (312)
Q Consensus 254 ~~q~~~~~~~i~g~~lg~~~~~ 275 (312)
++|.+++.++ +||++|+.+..
T Consensus 73 P~~svgiAag-vG~llG~Ll~R 93 (94)
T PF05957_consen 73 PWQSVGIAAG-VGFLLGLLLRR 93 (94)
T ss_pred hHHHHHHHHH-HHHHHHHHHhC
Confidence 4567777766 68888877653
No 85
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=20.84 E-value=4.7e+02 Score=22.55 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=44.3
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhh---hcccC-----------CCchhhhhhHHHHHHHHHHHHHHHHhhhhccc
Q 021436 210 TKKRNIHGVLNAVSWGILFPIGAIIARYL---RTFES-----------ADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGS 275 (312)
Q Consensus 210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~---k~~~~-----------~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~ 275 (312)
+.....|..+..++...+.=.++...-|+ |..|. +.+.+=++-...-.+++.+..+|++.|....+
T Consensus 69 ~~~l~iHv~~~~~~ya~~~ia~~~al~~l~~~~~Lk~~~~~~~~~~lp~l~~le~~~~~~~~~gf~~lti~l~~G~~wa~ 148 (214)
T PF01578_consen 69 SPWLYIHVPLALLGYAAFAIAALAALLYLIQERRLKKKKFSRFYQRLPSLETLERLSYRLILIGFILLTIGLITGAIWAK 148 (214)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 45789999999999988877776655555 11100 01122244555566788888889999877664
Q ss_pred cC
Q 021436 276 DS 277 (312)
Q Consensus 276 ~~ 277 (312)
+.
T Consensus 149 ~~ 150 (214)
T PF01578_consen 149 DS 150 (214)
T ss_pred Hh
Confidence 43
No 86
>COG4244 Predicted membrane protein [Function unknown]
Probab=20.69 E-value=5e+02 Score=22.07 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHHhhh
Q 021436 248 WFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKA 303 (312)
Q Consensus 248 Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~~~g 303 (312)
--+-|...-++..++++.++...+...+... ...-.=-.++++.+.++.+|..+|
T Consensus 86 a~wh~~lG~il~~~la~~~~~r~~~~~~~~~-~v~~~~L~lsl~~~~Lv~l~g~lG 140 (160)
T COG4244 86 AEWHHVLGNILLIVLAILTAWRYVHRNDAVA-AVSPAGLLLSLATVLLVALQGYLG 140 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChh-hccHHHHHHHHHHHHHHHHHHHHh
Confidence 3356777777788888777776322222211 111134578899999999998766
No 87
>PF13630 SdpI: SdpI/YhfL protein family
Probab=20.43 E-value=1.9e+02 Score=20.47 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=17.8
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHhhhhc
Q 021436 245 DPAWFYLHVLCQSSAYAIGVAGWGTGLKL 273 (312)
Q Consensus 245 ~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~ 273 (312)
+..|-+.|+.+=-.-++.+++-+++++..
T Consensus 20 ~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~ 48 (76)
T PF13630_consen 20 DENWKKAHRFAGKIFIIGGIVLLIIGIII 48 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888876555555555544444443
Done!