Query 021436
Match_columns 312
No_of_seqs 171 out of 803
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7b_A Cellobiose dehydrogenas 99.8 5.4E-18 1.9E-22 146.2 14.4 137 49-198 22-177 (186)
2 3s8f_C Cytochrome C oxidase po 32.8 37 0.0013 20.3 2.7 21 214-236 13-33 (34)
3 3ayf_A Nitric oxide reductase; 30.8 95 0.0032 31.9 7.1 56 211-271 350-412 (800)
4 4gd3_A NI/Fe-hydrogenase 1 B-t 29.6 99 0.0034 26.2 6.2 22 284-305 62-83 (235)
5 2nr1_A NR1 M2, M2; receptor, s 24.9 54 0.0018 18.4 2.2 16 217-232 10-25 (27)
6 4a2n_B Isoprenylcysteine carbo 16.7 1.4E+02 0.005 24.6 4.4 50 219-272 45-94 (194)
7 1kqf_C FDH-N gamma, formate de 14.3 1.2E+02 0.004 25.2 3.3 14 219-232 20-33 (217)
8 2lon_A HIG1 domain family memb 18.3 38 0.0013 25.3 0.0 25 245-269 58-82 (99)
9 3mk7_A Cytochrome C oxidase, C 13.1 2.2E+02 0.0074 27.1 5.0 61 209-270 53-116 (474)
10 4gd3_A NI/Fe-hydrogenase 1 B-t 12.8 5.8E+02 0.02 21.1 8.6 59 211-271 17-82 (235)
No 1
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*
Probab=99.77 E-value=5.4e-18 Score=146.25 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=104.5
Q ss_pred CCCeEEEEEEecC----CCeEEEEEEeccCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEeeccccccc-CC
Q 021436 49 SLSSFLHFTYDAS----NRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIV-PT 123 (312)
Q Consensus 49 ~~~~~l~W~~~~~----~~~~~i~f~~~~~~~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~~~g~~~p~-~~ 123 (312)
..+..+.|.+..+ +++.||+|+++.|.+.||+|||+ |.+|.|++|+|+|+++ |++++++|+.+||.+|. ++
T Consensus 22 ~~~~~f~~alP~~~~s~~~s~d~~~qi~~p~~~gW~g~g~---Gg~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~ 97 (186)
T 1d7b_A 22 VHDVTYGFVFPPLATSGAQSTEFIGEVVAPIASKWIGIAL---GGAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYT 97 (186)
T ss_dssp TTTEEEEEEBCCCCSSSCCCCCEEEEEEEETTCCEEEEET---TSSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECC
T ss_pred CCCEEEEEECCCcccCCCCCccEEEEEEccCCCCEEEEec---CCCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccC
Confidence 4456666665432 23468999999888899999998 5669999999999974 89999999999999997 78
Q ss_pred CCeeEEeeccceEEeCCEEEEEEEEecCCccc---------CCCceeEEeeecCCCC-----CCCCcccCCCCCCCCCCc
Q 021436 124 KKLSFDVWDTSADESGGLMRIYGKVKVPEELA---------KAGKLNQVWQVGPSVT-----PEGMIAKHDFAPPNLNSK 189 (312)
Q Consensus 124 ~~~~~~v~~~s~~~~~g~~~~~~~~~l~~~~~---------~~~~~~~iwa~G~~~~-----~~~~l~~H~~~g~n~~s~ 189 (312)
++.+++++.++.+ +++++++ +++|++|.. +++. .++||+++... ++..|.+|+.+| .
T Consensus 98 ~~~~~~lL~gs~v-n~t~~~~--~f~C~~C~~w~~~g~~~~ts~~-~~iwA~~~~~p~~~~~~~a~~~~H~~~G-----~ 168 (186)
T 1d7b_A 98 GTATLTTLPETTI-NSTHWKW--VFRCQGCTEWNNGGGIDVTSQG-VLAWAFSNVAVDDPSDPQSTFSEHTDFG-----F 168 (186)
T ss_dssp SSCEEEECTTCEE-CSSEEEE--EEEEETTTBCTTSCBCCTTSEE-EEEEEEESSCCSCTTCTTCCCCCCSEEE-----E
T ss_pred CCceEEEcccccE-eCCEEEE--EEEeCCCcccCCCCccccCCCC-eEEEEECCCCCCCCCCCcccchhhhCcc-----e
Confidence 8899999987654 5888874 556656632 1223 89999875421 356899998764 6
Q ss_pred eEEecCCcc
Q 021436 190 GALDLSGAQ 198 (312)
Q Consensus 190 ~~ldl~~g~ 198 (312)
+.+||..+.
T Consensus 169 ~~~dL~~a~ 177 (186)
T 1d7b_A 169 FGIDYSTAH 177 (186)
T ss_dssp EEEEGGGCB
T ss_pred EEEEccccc
Confidence 999998754
No 2
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=32.77 E-value=37 Score=20.27 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 021436 214 NIHGVLNAVSWGILFPIGAIIAR 236 (312)
Q Consensus 214 ~~Hg~lm~iaw~~l~P~g~~~aR 236 (312)
-.=|.++.++|...+ +.++.|
T Consensus 13 ~ilg~~I~i~W~~vf--~lFl~R 33 (34)
T 3s8f_C 13 LVLTLTILVFWLGVY--AVFFAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHH--eeeecC
Confidence 445777888887776 544444
No 3
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=30.83 E-value=95 Score=31.87 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=36.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHH---HHHhhhcccCCCch----hhhhhHHHHHHHHHHHHHHHHhhh
Q 021436 211 KKRNIHGVLNAVSWGILFPIGAI---IARYLRTFESADPA----WFYLHVLCQSSAYAIGVAGWGTGL 271 (312)
Q Consensus 211 ~~~~~Hg~lm~iaw~~l~P~g~~---~aR~~k~~~~~~~~----Wf~~H~~~q~~~~~~~i~g~~lg~ 271 (312)
+++.+||.+|++ |+...=+|.. +-|..+ ++|. .-.+...+-.++.++.++++.+|.
T Consensus 350 ~lrT~Hg~~mIf-~~~~~~~g~~~ylvP~~~g----~dp~~~~~L~~~~fwl~~~g~vl~~~s~~~G~ 412 (800)
T 3ayf_A 350 IAKGYHLQLAIF-WIATAWLGMGIFIAPLVGG----QEPKKQGLLVDLLFWALVVLVGGSMIGQWLGV 412 (800)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHT----SCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC----CCCccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578899999999 8776555532 233332 2255 445566666777777777777764
No 4
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=29.59 E-value=99 Score=26.16 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=18.6
Q ss_pred ChhhhHHHHHHHHHHHHhhhhh
Q 021436 284 GHRNIGIALFSLATVQVTKALV 305 (312)
Q Consensus 284 ~H~~lG~~v~~l~~~Q~~~g~~ 305 (312)
.|..+|++++++.++-.+.++.
T Consensus 62 ~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 62 IHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999988888877765
No 5
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=24.93 E-value=54 Score=18.40 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 021436 217 GVLNAVSWGILFPIGA 232 (312)
Q Consensus 217 g~lm~iaw~~l~P~g~ 232 (312)
..-|-++|++|+-.|+
T Consensus 10 ~aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 10 SSAMWFSWGVLLNSGI 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheeccc
Confidence 4457889999998876
No 6
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=16.68 E-value=1.4e+02 Score=24.56 Aligned_cols=50 Identities=12% Similarity=-0.132 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhh
Q 021436 219 LNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLK 272 (312)
Q Consensus 219 lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~ 272 (312)
++.++|..++.+..+.+++-. +++.++.++..++.++.++.++|+.+-..
T Consensus 45 ~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~p~~~~~~G~~l~l~G~~l~~~ 94 (194)
T 4a2n_B 45 LVFLNFIGMVFLPLTAVFSSY----LDSFNINLPDSIRLFALIVTFLNIGLFTK 94 (194)
T ss_dssp HHHHHHHHHTHHHHHHHSCSG----GGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC----cchhhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544311 12334467778888999999888886444
No 7
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=14.32 E-value=1.2e+02 Score=25.15 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 021436 219 LNAVSWGILFPIGA 232 (312)
Q Consensus 219 lm~iaw~~l~P~g~ 232 (312)
+|++++.+++-.|.
T Consensus 20 ~~a~~ii~l~~tG~ 33 (217)
T 1kqf_C 20 TVVICFFLVALSGI 33 (217)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555554443
No 8
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=18.31 E-value=38 Score=25.32 Aligned_cols=25 Identities=16% Similarity=-0.053 Sum_probs=20.6
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHh
Q 021436 245 DPAWFYLHVLCQSSAYAIGVAGWGT 269 (312)
Q Consensus 245 ~~~Wf~~H~~~q~~~~~~~i~g~~l 269 (312)
...++++-+..|.+++++.++|.+.
T Consensus 58 Sqklmr~RV~AQg~tV~al~~g~~y 82 (99)
T 2lon_A 58 SIHLIHTRVAAQACAVGAIMLGAVY 82 (99)
Confidence 5678999999999999888877653
No 9
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=13.05 E-value=2.2e+02 Score=27.14 Aligned_cols=61 Identities=11% Similarity=0.027 Sum_probs=33.4
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHH---HHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhh
Q 021436 209 RTKKRNIHGVLNAVSWGILFPIGA---IIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTG 270 (312)
Q Consensus 209 ~~~~~~~Hg~lm~iaw~~l~P~g~---~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg 270 (312)
-.+++.+||.+|++.|..-.=+|. ++-|..+.- -..|+.=.+...+-..+.++.++++.+|
T Consensus 53 Yn~~~T~H~~~mIf~~v~p~~~g~gn~lvPl~~ga~-mafprln~~sfwl~~~~~~l~~~s~~~G 116 (474)
T 3mk7_A 53 FGRLRPLHTNAVIFAFGGCALFATSYYSVQRTCQTT-LFAPKLAAFTFWGWQLVILLAAISLPLG 116 (474)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSC-CSSHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 347899999999998876555553 233333310 0122332444444455555555555544
No 10
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=12.84 E-value=5.8e+02 Score=21.10 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=33.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCch-------hhhhhHHHHHHHHHHHHHHHHhhh
Q 021436 211 KKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPA-------WFYLHVLCQSSAYAIGVAGWGTGL 271 (312)
Q Consensus 211 ~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~-------Wf~~H~~~q~~~~~~~i~g~~lg~ 271 (312)
..+..|= ++++++.+++..|..+.......+ +.+. ...+|..+-.+-+++.++=++.++
T Consensus 17 ~~R~~HW-~~a~~ii~l~~tG~~~~~~~~~~~-g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~ 82 (235)
T 4gd3_A 17 PVRIWHW-LTVLCMAVLMVTGYFIGKPLPSVS-GEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAF 82 (235)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHSCCCCCC-SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCcccccc-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566774 678888888888865532111001 1111 225899887666666555444444
Done!