BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021437
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24239|ANGEL_DROME Protein angel OS=Drosophila melanogaster GN=angel PE=1 SV=2
Length = 354
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 10/176 (5%)
Query: 23 SWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYD--QFGVSRKGPEDTSDEH 80
SW +R+ + + P ILC Q+ L L Q L + + K +
Sbjct: 97 SWQRRQQNLLRELLKLDPDILCLQEMQFDHLPVLVQRLRMGNGKKLAYVYKKKTGCRTDG 156
Query: 81 CTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIV 140
C I YD K ELL+ L + ++ +A +A F+ K + F +
Sbjct: 157 CAIVYDSSKFELLDHQAVELYDQAVALLNR------DNVALFARFRFKKQQEQQKEFVVA 210
Query: 141 NTNMDEFTARARRRSALL--TWQHIASLPPSLPVIYCGGFNTQKESTTGRFLLGRS 194
T++ T R+ R A + + + S P++ G FN+ +S+ FL+G++
Sbjct: 211 TTHLLFNTKRSDVRCAQVERILEELQSFSTDTPIVLTGDFNSLPDSSPIEFLVGKN 266
>sp|Q4P9T3|CCR4_USTMA Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CCR4 PE=3
SV=1
Length = 670
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 118/346 (34%), Gaps = 75/346 (21%)
Query: 23 SWVKRRDLCISVITSYSPMILCTQQ-GVKSQLDYLQQCLPAYDQFGV--------SRKGP 73
+W R++ + + SYS I C Q+ GV+ DY L D GV + +
Sbjct: 331 AWDYRKEFILQEVMSYSADICCLQEVGVEQYEDYFLHHLSQQDYEGVFYPKSRARTMRDD 390
Query: 74 EDTSDEHCTIFYDKEKVELLEGGTFWLS----ESPSVPGSKAWGAEVPCIATWATFQLKG 129
E + C IFY K +L+E + + P S+ V A L
Sbjct: 391 ERRRVDGCAIFYKSNKYQLIEKQLVEFNQIALQRPDFKKSEDMYNRVMTKDNIAVIALLE 450
Query: 130 VEPPGFSFQIVNTN------------------MDEFTARARRRSALLTWQHIA-SLPP-- 168
+ G + N + MDE R + L +A PP
Sbjct: 451 NKLSGSRIVVANVHTHWDPAFRDVKLVQVAMLMDEVEKAGARFAKLPPKPSVAEGYPPPP 510
Query: 169 ------SLPVIYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPNARMRKNVSLIRTY 222
+P I CG FN+ E+ FL + V GD D + + N +
Sbjct: 511 KYTHANQIPTIICGDFNSVPETGVYDFLANGA----VPGDHEDFMDH--VYGNYTAQGLQ 564
Query: 223 HGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSLIPGSCEVVNDNIDGYY 282
H +K LE + L + ID+I + +L S V ID Y
Sbjct: 565 HSYK------LESSYVPIGELPFTNYTPGYEGAIDYIFYTKNTL---SVTGVLGEIDKQY 615
Query: 283 -------PSSHYP-----IFAEFMLPR--------TVRVIEQPNST 308
P++H+P I +EF + R T R + P S+
Sbjct: 616 LSKVVGFPNAHFPSDHICIMSEFNVKRSDRGSSSTTAREVHHPTSS 661
>sp|Q9ET55|NOCT_RAT Nocturnin (Fragment) OS=Rattus norvegicus GN=Ccrn4l PE=2 SV=1
Length = 253
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 27/171 (15%)
Query: 24 WVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGP--------ED 75
W +R+ L + I +Y P ILC Q+ V D LQ L G P +
Sbjct: 96 WEERKCLILEEILAYQPDILCLQE-VDHYFDTLQPLLSRLGYQGTFFPKPWSPCLDVEHN 154
Query: 76 TSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGF 135
+ C +F+ + + +L+ L+ A + +A T + K G
Sbjct: 155 NGPDGCALFFLQSRFKLINSTNIRLT---------AMTLKTNQVAIAQTLECKES---GR 202
Query: 136 SFQIVNTNMDEFTARARRRSA-----LLTWQHIASLPPSLPVIYCGGFNTQ 181
F I T++ T R RSA L + Q+I +P+I CG FN +
Sbjct: 203 QFCIAVTHLKARTGWERFRSAQGCDLLQSLQNITE-GAKIPLIVCGDFNAE 252
>sp|Q9UK39|NOCT_HUMAN Nocturnin OS=Homo sapiens GN=CCRN4L PE=2 SV=2
Length = 431
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 65/171 (38%), Gaps = 27/171 (15%)
Query: 24 WVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGP--------ED 75
W +R+ L + I +Y P ILC Q+ V D Q L G P +
Sbjct: 172 WEERKCLILEEILAYQPDILCLQE-VDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHN 230
Query: 76 TSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGF 135
+ C +F+ + + +L+ L+ A + +A T + K G
Sbjct: 231 NGPDGCALFFLQNRFKLVNSANIRLT---------AMTLKTNQVAIAQTLECKES---GR 278
Query: 136 SFQIVNTNMDEFTARARRRSA-----LLTWQHIASLPPSLPVIYCGGFNTQ 181
F I T++ T R RSA L Q+I +P+I CG FN +
Sbjct: 279 QFCIAVTHLKARTGWERFRSAQGCDLLQNLQNITQ-GAKIPLIVCGDFNAE 328
>sp|O35710|NOCT_MOUSE Nocturnin OS=Mus musculus GN=Ccrn4l PE=2 SV=3
Length = 429
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 65/171 (38%), Gaps = 27/171 (15%)
Query: 24 WVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGP--------ED 75
W +R+ L + I +Y P ILC Q+ V D Q L G P +
Sbjct: 170 WEERKCLILEEILAYQPDILCLQE-VDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHN 228
Query: 76 TSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGF 135
+ C +F+ + + +L+ L+ A + +A T + K G
Sbjct: 229 NGPDGCALFFLQNRFKLISSTNIRLT---------AMTLKTNQVAIAQTLECKES---GR 276
Query: 136 SFQIVNTNMDEFTARARRRSA-----LLTWQHIASLPPSLPVIYCGGFNTQ 181
F I T++ T R RSA L Q+I +P+I CG FN +
Sbjct: 277 QFCIAVTHLKARTGWERFRSAQGCDLLQNLQNITQ-GAKIPLIVCGDFNAE 326
>sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4
Length = 5065
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 16/119 (13%)
Query: 93 LEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGV----EPPGFSFQIVNTNM---- 144
LEG FW +E + S E+P W T Q GV PPG + +
Sbjct: 3275 LEGSQFWATEDATTTASAVVAIEIPQSQGWYTVQSDGVTQYIAPPGILSTVSEIPLTDVV 3334
Query: 145 --DEFTARARRRSALLTWQH------IASLPPSLPVIYCGGFNTQKESTTGRFLLGRSR 195
+E + R A + Q+ + P S I G T E T R + R R
Sbjct: 3335 VKEEKQPKKRSSGAKVRGQYDDMGENMTDDPRSFKKIVDSGVQTDDEDATDRSYVSRRR 3393
>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1 SV=1
Length = 5085
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 94 EGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGV----EPPGFSFQIVNTNM----- 144
EG FW +E + S E+P W T Q GV PPG + +
Sbjct: 3290 EGSQFWATEDATTTASTVVAIEIPQSQGWYTVQSDGVTQYIAPPGILSTVSEIPLTDVVV 3349
Query: 145 -DEFTARARRRSALLTWQH------IASLPPSLPVIYCGGFNTQKESTTGRFLLGRSR 195
+E + R A + Q+ +A P +L I G T E T R R R
Sbjct: 3350 KEEKQPKKRSSGAKVRGQYDEMGESVADDPRNLKKIVDSGVQTDDEETADRSYASRRR 3407
>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1 SV=4
Length = 5068
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 94 EGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGV----EPPGFSFQIVNTNM----- 144
EG FW +E + S E+P W T Q GV PPG + +
Sbjct: 3274 EGSQFWATEDATTTASTVVAIEIPQSQGWYTVQSDGVTQYIAPPGILSTVSEIPLTDVVV 3333
Query: 145 -DEFTARARRRSALLTWQH------IASLPPSLPVIYCGGFNTQKESTTGRFLLGRSR 195
+E + R A + Q+ +A P +L I G T E T R R R
Sbjct: 3334 KEEKQPKKRSSGAKVRGQYDEMGESMADDPRNLKKIVDSGVQTDDEETADRTYASRRR 3391
>sp|Q0WKY2|CCR4E_ARATH Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis
thaliana GN=CCR4-5 PE=2 SV=2
Length = 454
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 1 MSVALSLMTFNL--------HEDQQEDSPNS---WVKRRDLCISVITSYSPMILCTQQGV 49
++ L L+++NL H D + P W +R+ L I+ Y+ ILC Q+
Sbjct: 96 LADKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKEISRYNASILCLQE-- 153
Query: 50 KSQLDYLQQCLPAYDQFGVSRKGPEDTSDEHCTIFYDKEKVELLE 94
+ D L L GV + + SD C IF+ + ELL+
Sbjct: 154 VDRFDDLDVLLKNRGFRGVHKSRTGEASDG-CAIFWKENLFELLD 197
>sp|P79942|NOCT_XENLA Nocturnin OS=Xenopus laevis GN=ccrn4l PE=2 SV=1
Length = 388
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 30/181 (16%)
Query: 24 WVKRRDLCISVITSYSPMILCTQ---------QGVKSQLDYLQQCLPAYDQFGVSRKGPE 74
W +R+ L + I Y P +LC Q Q + S+L Y QC +
Sbjct: 129 WEERKYLILEEILMYQPDVLCLQEVDHYFDTFQPILSRLGY--QCTFLAKPWSPCLDVEH 186
Query: 75 DTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIAT-----WATFQLKG 129
+ + C +F+ +++ +L+ LS A + C T +A LK
Sbjct: 187 NNGPDGCALFFLQDRFQLVNSAKIRLSARTLKTNQVAIAETLQCCETGRQLCFAVTHLKA 246
Query: 130 VEPPGFSFQIVNTNMDEFTARARRRSALLTWQHIASLPPSLPVIYCGGFNTQ-KESTTGR 188
T + F R + S LL + ++P+I CG FN E R
Sbjct: 247 -----------RTGWERF--RLAQGSDLLDNLESITQGATVPLIICGDFNADPTEEVYKR 293
Query: 189 F 189
F
Sbjct: 294 F 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,799,943
Number of Sequences: 539616
Number of extensions: 5305898
Number of successful extensions: 8816
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8808
Number of HSP's gapped (non-prelim): 12
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)