Query 021437
Match_columns 312
No_of_seqs 119 out of 1442
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 04:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g6s_A Putative endonuclease/e 100.0 9.1E-43 3.1E-47 304.3 26.9 260 3-296 2-261 (267)
2 3mpr_A Putative endonuclease/e 100.0 2E-42 6.9E-47 307.3 26.5 259 2-296 4-290 (298)
3 3l1w_A Uncharacterized protein 100.0 4.9E-41 1.7E-45 291.6 26.2 252 5-297 1-253 (257)
4 4gz1_A Tyrosyl-DNA phosphodies 100.0 3.2E-34 1.1E-38 247.1 26.4 242 2-295 7-254 (256)
5 4f1h_A Tyrosyl-DNA phosphodies 100.0 1.3E-33 4.3E-38 241.2 25.3 240 3-294 2-249 (250)
6 3ngq_A CCR4-NOT transcription 100.0 3.6E-35 1.2E-39 267.9 14.4 190 3-193 30-269 (398)
7 4fva_A 5'-tyrosyl-DNA phosphod 100.0 3.1E-33 1.1E-37 241.1 24.8 237 2-294 11-255 (256)
8 3teb_A Endonuclease/exonucleas 100.0 1.3E-33 4.4E-38 245.6 19.9 243 2-295 1-266 (266)
9 4gew_A 5'-tyrosyl-DNA phosphod 100.0 5.4E-33 1.8E-37 252.7 24.8 237 2-294 117-361 (362)
10 1zwx_A SMCL, sphingomyelinase- 100.0 7.2E-30 2.5E-34 226.2 21.5 250 2-295 8-300 (301)
11 3i41_A Beta-hemolysin; beta to 100.0 2.1E-29 7.2E-34 225.4 20.3 178 2-193 27-230 (317)
12 2ddr_A Sphingomyelin phosphodi 100.0 1.3E-28 4.3E-33 218.6 21.2 176 2-192 7-216 (306)
13 1ako_A Exonuclease III; AP-end 100.0 9.9E-29 3.4E-33 214.9 16.7 228 5-294 1-267 (268)
14 2jc4_A Exodeoxyribonuclease II 100.0 8.6E-28 2.9E-32 207.5 19.6 225 5-295 1-256 (256)
15 4b8c_D Glucose-repressible alc 100.0 7.1E-30 2.4E-34 251.9 5.4 187 4-193 394-619 (727)
16 1vyb_A ORF2 contains A reverse 100.0 6.8E-27 2.3E-31 199.6 22.4 217 1-294 4-238 (238)
17 2a40_B Deoxyribonuclease-1; WA 100.0 1.9E-28 6.7E-33 213.0 11.8 170 5-189 1-183 (260)
18 2j63_A AP-endonuclease; base e 99.9 2.9E-26 9.9E-31 213.7 18.4 252 3-296 148-467 (467)
19 1wdu_A TRAS1 ORF2P; four-layer 99.9 9E-26 3.1E-30 194.3 20.2 224 2-296 17-244 (245)
20 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 5.3E-26 1.8E-30 196.6 18.6 223 5-295 2-257 (257)
21 2o3h_A DNA-(apurinic or apyrim 99.9 8.3E-26 2.8E-30 198.6 18.8 227 2-295 26-285 (285)
22 1hd7_A DNA-(apurinic or apyrim 99.9 1.1E-25 3.8E-30 201.3 17.6 227 2-295 59-318 (318)
23 3g91_A MTH0212, exodeoxyribonu 99.9 7.2E-25 2.5E-29 190.7 18.9 227 4-298 3-260 (265)
24 2jc5_A Exodeoxyribonuclease; h 99.9 3.3E-25 1.1E-29 191.6 16.1 224 5-296 2-257 (259)
25 2imq_X Salivary nitrophorin; f 99.9 1.8E-24 6.2E-29 189.8 9.7 243 3-296 7-281 (282)
26 2ei9_A Non-LTR retrotransposon 99.9 2.9E-22 1E-26 171.8 17.0 217 2-304 5-228 (240)
27 2f1n_A CDT B, cytolethal diste 99.8 1.7E-19 5.8E-24 151.9 9.9 157 3-188 14-196 (262)
28 1sr4_B CDT B, cytolethal diste 99.8 3E-18 1E-22 146.0 15.9 155 3-184 3-184 (261)
29 1i9z_A Synaptojanin, phosphati 99.8 1.2E-17 4.3E-22 149.5 20.4 242 4-297 26-317 (347)
30 2xsw_A 72 kDa inositol polypho 99.7 4.1E-15 1.4E-19 133.5 19.2 160 4-184 27-211 (357)
31 3mtc_A Type II inositol-1,4,5- 99.6 4.5E-13 1.5E-17 117.3 21.1 247 4-298 9-304 (313)
32 4a9c_A Phosphatidylinositol-3, 99.4 2.6E-11 8.9E-16 106.4 18.9 157 4-182 9-196 (316)
No 1
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=100.00 E-value=9.1e-43 Score=304.34 Aligned_cols=260 Identities=32% Similarity=0.494 Sum_probs=216.2
Q ss_pred ccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHHHhcCCCCceEeeecCCCCCCCCceEE
Q 021437 3 VALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGPEDTSDEHCT 82 (312)
Q Consensus 3 ~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~~~~~~a 82 (312)
.+||||||||++....++...|..|++.|.++|++.+||||||||+...+++.|.+.|.+|.+++.++.. +...+.+++
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l~~y~~~~~~~~~-~~~~g~~~a 80 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGLPEYDGIGVGRDD-GKTAGEYAP 80 (267)
T ss_dssp EEEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHCTTEEEECCCTTT-SSSSSCBCC
T ss_pred CcEEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHhccCCcEEEecCCC-CCcCCceeE
Confidence 5799999999988766667789999999999999999999999999998888999888889998766642 334566799
Q ss_pred EEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccHHHHHHHHHHHHHH
Q 021437 83 IFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTARARRRSALLTWQH 162 (312)
Q Consensus 83 i~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~r~~~~~~l~~~ 162 (312)
|+|++++++++....++++..|..+++.+|+...+|.++++.|+.... |+.+.|+|+|+++.+...|.+|++.+++.
T Consensus 81 il~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~---~~~~~v~~~Hl~~~~~~~R~~q~~~l~~~ 157 (267)
T 3g6s_A 81 LFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKAT---GKIFMAVNTHFDHVGEEARRQSALLIIRK 157 (267)
T ss_dssp EEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTT---CCEEEEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred EEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCC---CCEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988887766778888899999999987654 78999999999998889999999999999
Q ss_pred HHhcCCCCCEEEEecCCCCCCchhHHhhhcccccCCccccccchhhhhhhcCCCCCcccccCCCCCCcchhHHHHHHHhh
Q 021437 163 IASLPPSLPVIYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPNARMRKNVSLIRTYHGFKGNKQGALEFLKLIFRA 242 (312)
Q Consensus 163 l~~~~~~~pvIv~GDfN~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 242 (312)
++++..+.|+|||||||+.+.+..++.+.+.+. .|.|++..+... .+...||+.+.+...
T Consensus 158 l~~~~~~~pvIl~GDfN~~~~~~~~~~l~~~~~------~l~d~~~~~~~~--~~~~~T~~~~~~~~~------------ 217 (267)
T 3g6s_A 158 IKEIVGERPAVVTGDFNVTDASDAYETITTNEF------VMKDAYKTAARV--TGVDYTFHDFARIPA------------ 217 (267)
T ss_dssp HHHHTTTSCEEEEEECSSCTTSHHHHHHHSSSS------CCEEHHHHCSEE--EECSCSBCTTTTSCG------------
T ss_pred HHHhcCCCCEEEEeECCCCCCCHHHHHhhcCCc------chhhhHhhhccc--cCCCCCEeCCCCCCC------------
Confidence 998766789999999999999999999987310 288998765421 134568776654210
Q ss_pred hhccccCCCCCCceeEEEecCCceeeeeEEeecCCCCCcCCCCCcceEEEEEec
Q 021437 243 LCLCWDRQTQDLHIDWILFRGRSLIPGSCEVVNDNIDGYYPSSHYPIFAEFMLP 296 (312)
Q Consensus 243 ~~~~~~~~~~~~riD~I~~s~~~~~~~~~~v~~~~~~~~~~SDH~pV~a~~~~~ 296 (312)
....||||||+++ .+++.+++++....++ ++|||+||+|++...
T Consensus 218 --------~~~~riD~I~~s~-~~~~~~~~v~~~~~~~-~~SDH~PV~a~~~~~ 261 (267)
T 3g6s_A 218 --------EDCEKIDFIFVTP-QVLVKSCEIPAEVPEA-LLSDHNPQLADLELE 261 (267)
T ss_dssp --------GGCCCCEEEEECT-TSEEEEEEECCCCSSS-CCCSBCCEEEEEEEC
T ss_pred --------CCCCcEeEEEeCC-CceEEEEEEecCCCCC-CCCCcccEEEEEEec
Confidence 0358999999998 5899999998875545 789999999999864
No 2
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-42 Score=307.30 Aligned_cols=259 Identities=30% Similarity=0.560 Sum_probs=212.5
Q ss_pred CccEEEEEeecCCCCCCCC--CCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHHHhcCCCCceEeeecCCCCCCCCc
Q 021437 2 SVALSLMTFNLHEDQQEDS--PNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGPEDTSDE 79 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~--~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~~~~ 79 (312)
+.+||||||||++....++ ...|..|++.|+++|++.+|||||||||...+++.|.+.|++|.|++.++.. +...++
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l~~y~~~~~~~~~-g~~~g~ 82 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDMKEALPGYDYIGVGRDD-GKDKGE 82 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHSTTEEEECCCTTT-SSSSSC
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHhCCCCcEEEEecCC-CCCCCc
Confidence 4679999999998765444 6789999999999999999999999999998899999988889998877652 334567
Q ss_pred eEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccHHHHHHHHHHH
Q 021437 80 HCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTARARRRSALLT 159 (312)
Q Consensus 80 ~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~r~~~~~~l 159 (312)
+++|+|+++++++++...++++..|..++ .+|+...+|.++++.|+...+ |+.|.|+|+||++.+...|.+|++.+
T Consensus 83 ~~aily~~sr~~i~~~~~~~l~~~p~~~~-~~~~~~~~R~~~~~~~~~~~~---g~~~~v~~~Hl~~~~~~~R~~q~~~l 158 (298)
T 3mpr_A 83 HSAIFYRTDKFDIVEKGDFWLSETPDVPS-KGWDAVLPRICSWGHFKCKDT---GFEFLFFNLHMDHIGKKARVESAFLV 158 (298)
T ss_dssp BCCEEEETTTEEEEEEEEEESSSSTTSSC-CCTTCSSCCEEEEEEEEETTT---CCEEEEEEEECCSSCHHHHHHHHHHH
T ss_pred eeEEEEecCceEEEeccEEEccCCCCccC-cccccccCceeEEEEEEEcCC---CCEEEEEEecCCCCCHHHHHHHHHHH
Confidence 79999999999999999999998887765 677778899999999987554 88999999999998889999999999
Q ss_pred HHHHHhcC--CCCCEEEEecCCCCCCchhHHhhhcccccCCccccccchhhhhhhcCCCCCcccccCCCCCCcchhHHHH
Q 021437 160 WQHIASLP--PSLPVIYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPNARMRKNVSLIRTYHGFKGNKQGALEFLK 237 (312)
Q Consensus 160 ~~~l~~~~--~~~pvIv~GDfN~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 237 (312)
.+.++++. .+.|+|||||||+.+.+.+|+.|.+.+ .+.|++..+... .+...||+++.....
T Consensus 159 ~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~~l~~~g-------~l~D~~~~~~~~--~~~~~T~~~~~~~~~------- 222 (298)
T 3mpr_A 159 QEKMKELGRGKNLPAILTGDFNVDQTHQSYDAFVSKG-------VLCDSYEKCDYR--YALNGTFNNFDPNSF------- 222 (298)
T ss_dssp HHHHHHTTTTSCCCEEEEEECSSCTTSHHHHHHHTTS-------SSEEHHHHCSEE--ECSSCSBCTTCTTCC-------
T ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCHHHHHHhcCC-------cchhhHhhhccc--CCCCCCccCCCCCCC-------
Confidence 99999876 568999999999999999999998732 388998765432 234568876643211
Q ss_pred HHHhhhhccccCCCCCCceeEEEecCCceeeeeEEeecCCCC------------------------CcCCCCCcceEEEE
Q 021437 238 LIFRALCLCWDRQTQDLHIDWILFRGRSLIPGSCEVVNDNID------------------------GYYPSSHYPIFAEF 293 (312)
Q Consensus 238 ~~~~~~~~~~~~~~~~~riD~I~~s~~~~~~~~~~v~~~~~~------------------------~~~~SDH~pV~a~~ 293 (312)
+..||||||+++ .+.+.+++++..... ...+|||+||+|++
T Consensus 223 --------------~~~rID~Il~s~-~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~ 287 (298)
T 3mpr_A 223 --------------TESRIDHIFVSP-SFHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVEL 287 (298)
T ss_dssp --------------CSCCCEEEEECT-TSEEEEEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEE
T ss_pred --------------CCceEEEEEeCC-CeeEEEEEEecCccccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEE
Confidence 468999999998 588888888754110 12579999999998
Q ss_pred Eec
Q 021437 294 MLP 296 (312)
Q Consensus 294 ~~~ 296 (312)
...
T Consensus 288 ~~~ 290 (298)
T 3mpr_A 288 VFD 290 (298)
T ss_dssp EEC
T ss_pred ecc
Confidence 754
No 3
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=100.00 E-value=4.9e-41 Score=291.61 Aligned_cols=252 Identities=24% Similarity=0.411 Sum_probs=205.8
Q ss_pred EEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHHHhcCCCCceEeeecCCCCCCCCceEEEE
Q 021437 5 LSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGPEDTSDEHCTIF 84 (312)
Q Consensus 5 l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~~~~~~ai~ 84 (312)
|||+||||++....++...|+.|+..|.+.|+..+|||||||||...+++.|.+.+ +|.+++.++.. + ..+.+++|+
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l-~y~~~~~~~~~-~-~~~~g~ail 77 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAYT-TFTCLSAEREG-D-GQGEGLAIL 77 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHS-SSEEEEEESSS-S-SCSCEEEEE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHhcC-CCcEEEecccC-C-CCCceEEEE
Confidence 69999999988776667789999999999999999999999999998888888876 89888877653 2 456789999
Q ss_pred EeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccHHHHHHHHHHHHHHHH
Q 021437 85 YDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTARARRRSALLTWQHIA 164 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~r~~~~~~l~~~l~ 164 (312)
|+++++++++...++++..|..++. +++...+|.++++.++...+ |+.+.|+|+|+++.+...|..|++.+.++++
T Consensus 78 ~r~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~---g~~~~v~~~Hl~~~~~~~r~~q~~~l~~~i~ 153 (257)
T 3l1w_A 78 YNEQKVQAIDTGYFWLSETPQQPSI-HPEAGCPRIALWGLFKETTQ---NTPFLVINVHLDHISAHARLAGMTVILEELH 153 (257)
T ss_dssp ECTTTEEEEEEEEEESSSSTTSSCC-CTTCSSCCEEEEEEEEETTC---SSCEEEEEEECCSSCHHHHHHHHHHHHHHTH
T ss_pred EEcceEEEEecCeEECcCCCCcccc-cccccccceeEEEEEEEcCC---CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876642 33567789999999987654 7899999999999888899999999999988
Q ss_pred -hcCCCCCEEEEecCCCCCCchhHHhhhcccccCCccccccchhhhhhhcCCCCCcccccCCCCCCcchhHHHHHHHhhh
Q 021437 165 -SLPPSLPVIYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPNARMRKNVSLIRTYHGFKGNKQGALEFLKLIFRAL 243 (312)
Q Consensus 165 -~~~~~~pvIv~GDfN~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
.+..+ |+|||||||+.+.+..++.+.+ .+.|++...... +...||+.+......
T Consensus 154 ~~~~~~-pvil~GDfN~~~~~~~~~~l~~---------~l~d~~~~~~~~---~~~~t~~~~~~~~~~------------ 208 (257)
T 3l1w_A 154 DKIAQY-PTLLMGDFNAESGEEVHQLVQK---------KFQDSKNLATHY---GPRGTFQNFTYTKPW------------ 208 (257)
T ss_dssp HHHHHS-CEEEEEECCCCTTSHHHHHHTT---------TCEEGGGTSEEE---SCSCCBCTTCTTCCG------------
T ss_pred HHcCCC-CEEEEeeCCCCCCcHHHHHhhh---------hccchhhhhccc---CCCCcccCCcccCCC------------
Confidence 34434 9999999999999999998775 388988765432 345677665432100
Q ss_pred hccccCCCCCCceeEEEecCCceeeeeEEeecCCCCCcCCCCCcceEEEEEecC
Q 021437 244 CLCWDRQTQDLHIDWILFRGRSLIPGSCEVVNDNIDGYYPSSHYPIFAEFMLPR 297 (312)
Q Consensus 244 ~~~~~~~~~~~riD~I~~s~~~~~~~~~~v~~~~~~~~~~SDH~pV~a~~~~~~ 297 (312)
..+.||||||+ + .+++.+++++.....+..+|||+||+++|++..
T Consensus 209 -------~~~~riD~i~~-~-~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 209 -------AELEEIDYIYV-K-GWQVQQTASLTDSIDGRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp -------GGCBCCEEEEE-E-SEEEEEEEECCCCBTTBCSSSBCCEEEEEEEC-
T ss_pred -------CCCCceeEEEE-C-CcEEEEEEEeccCcCCcccCCcceEEEEEEEEe
Confidence 03489999999 5 699999999887666678999999999999864
No 4
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=100.00 E-value=3.2e-34 Score=247.10 Aligned_cols=242 Identities=19% Similarity=0.254 Sum_probs=169.6
Q ss_pred CccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHHHhcCCCCceEeeecCCCCCCCCceE
Q 021437 2 SVALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGPEDTSDEHC 81 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~~~~~~ 81 (312)
+.+||||||||++.. ...|..|+..|++.|++.+|||||||||...+++.|.+.+..|.+...+ ..+.++
T Consensus 7 ~~~l~v~swNi~g~~----~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~~~~~~~~~------~~~~~~ 76 (256)
T 4gz1_A 7 SSTISFITWNIDGLD----GCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGN------EEGYFT 76 (256)
T ss_dssp GGEEEEEEEECCTTC----CTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHCTTEEEEESC------SSSSEE
T ss_pred CCcEEEEEEEcCCCc----CcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHhhccccceeecc------ccCCce
Confidence 467999999998542 3468899999999999999999999999998888888877655554432 245678
Q ss_pred EEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCc--cHHHHHHHHHHH
Q 021437 82 TIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEF--TARARRRSALLT 159 (312)
Q Consensus 82 ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~--~~~~r~~~~~~l 159 (312)
+++++++++.+............ ..+.+..+.+... |+.+.|+|+|+++. ....|.+|+..+
T Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-----~~~~~v~~~Hl~~~~~~~~~~~~q~~~~ 140 (256)
T 4gz1_A 77 AILLKKGRVKFKSQEIIPFPNTK-----------MMRNLLCVNVSLG-----GNEFCLMTSHLESTREHSAERIRQLKTV 140 (256)
T ss_dssp EEEEETTTEEEEEEEEEECTTCS-----------SCCEEEEEEEEET-----TEEEEEEECBCCCSGGGHHHHHHHHHHH
T ss_pred EEEEEeccccceecccccCCccc-----------ccceEEEEEEEeC-----CEEEEEEeecccccccchhhhhHHHHHH
Confidence 99999999888877665443211 1233444455443 78999999999874 456778888999
Q ss_pred HHHHHhcCCCCCEEEEecCCCCCCchhHHhhhcccccCCccccccchhhhhhhcCCCCCcccccCCCCCCcchhHHHHHH
Q 021437 160 WQHIASLPPSLPVIYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPNARMRKNVSLIRTYHGFKGNKQGALEFLKLI 239 (312)
Q Consensus 160 ~~~l~~~~~~~pvIv~GDfN~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 239 (312)
++.+++...+.|+|||||||..+.+..+..+... .+.|+|..+.... +...+|........
T Consensus 141 ~~~l~~~~~~~pvIl~GDfN~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------- 201 (256)
T 4gz1_A 141 LGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPD--------NVFDAWEFLGKPK--HCQYTWDTKANNNL--------- 201 (256)
T ss_dssp HHHHHHSCTTSEEEEEEECCCCHHHHHHHTCSCT--------TEEEHHHHTTCCG--GGSCSEETTTCCTT---------
T ss_pred hhhhhhccCcceEEEeCccCCCcchhhhhhhccc--------hhhhHHHHhcCCC--CCCcccccCCCCcc---------
Confidence 9999887777899999999998776655544432 2677777654322 22233332221110
Q ss_pred HhhhhccccCCCCCCceeEEEecCC--ceeeeeEEeecCC--CCCcCCCCCcceEEEEEe
Q 021437 240 FRALCLCWDRQTQDLHIDWILFRGR--SLIPGSCEVVNDN--IDGYYPSSHYPIFAEFML 295 (312)
Q Consensus 240 ~~~~~~~~~~~~~~~riD~I~~s~~--~~~~~~~~v~~~~--~~~~~~SDH~pV~a~~~~ 295 (312)
.+ ....+.||||||+++. .+.+.+++++... ..+.++|||+||+|+|++
T Consensus 202 ------~~-~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 202 ------RI-PAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp ------CC-SSCCEECCEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred ------cc-CCCCCccEEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 00 0124678999999874 2455667776543 345678999999999987
No 5
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=100.00 E-value=1.3e-33 Score=241.22 Aligned_cols=240 Identities=18% Similarity=0.260 Sum_probs=164.9
Q ss_pred ccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHHHhcCCCCceEeeecCCCCCCCCceEE
Q 021437 3 VALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGPEDTSDEHCT 82 (312)
Q Consensus 3 ~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~~~~~~a 82 (312)
++||||||||++.. ...|..|.+.|++.|++.+|||||||||...++..+...+..|.++... ....+.+
T Consensus 2 ~~l~v~t~Ni~g~~----~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~~~~~~~~~------~~~~~~~ 71 (250)
T 4f1h_A 2 SKLSIISWNVDGLD----TLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKRAVSYLFFEGS------DDGYFTG 71 (250)
T ss_dssp CCEEEEEEECCTTC----CTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHCTTEEEEESC------SSSSEEE
T ss_pred CeEEEEEEEeCCCC----CcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhccCceeeccc------ccccCce
Confidence 57999999998543 3468889999999999999999999999998888888877555444422 2345678
Q ss_pred EEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCc--cHHHHHHHHHHHH
Q 021437 83 IFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEF--TARARRRSALLTW 160 (312)
Q Consensus 83 i~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~--~~~~r~~~~~~l~ 160 (312)
+++.++++++.....+.+.... ..+.+..+.+... |..+.++++|+++. ....|.+|++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-----~~~~~v~~~hl~~~~~~~~~r~~q~~~~~ 135 (250)
T 4f1h_A 72 IMLRKSRVKFLESEIICFPTTQ-----------MMRNLLIAQVTFS-----GQKLYLMTSHLESCKNQSQERTKQLRVVL 135 (250)
T ss_dssp EEEETTTCEEEEEEEEECTTCS-----------SCCEEEEEEEEET-----TEEEEEEECBCCCSGGGHHHHHHHHHHHH
T ss_pred eEEeeccccceecccccccCcc-----------ccceEEEEEEecC-----CcEEEEeccccccccccHHHHHHHHHHHH
Confidence 8888899999988777654321 1244444444443 78999999999874 4467788999999
Q ss_pred HHHHhcCCCCCEEEEecCCCCCCchhHHhhhcccccCCccccccchhhhhhhcCCCCCcccccCCCCCCcchhHHHHHHH
Q 021437 161 QHIASLPPSLPVIYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPNARMRKNVSLIRTYHGFKGNKQGALEFLKLIF 240 (312)
Q Consensus 161 ~~l~~~~~~~pvIv~GDfN~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 240 (312)
+.+++.....|+|||||||+.+.+..+..+... .+.|++..+.... ....+|........
T Consensus 136 ~~l~~~~~~~pvIl~GDfN~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------- 195 (250)
T 4f1h_A 136 QKIKEAPEDAIVIFAGDTNLRDAEVANVGGLPA--------GVCDVWEQLGKQE--HCRYTWDTKANSNK---------- 195 (250)
T ss_dssp HHHHHSCTTEEEEEEEECCCCHHHHHTTTSSCT--------TEEEHHHHTTCCG--GGCCSEETTTCCSS----------
T ss_pred HHHHhcCCCCCEEEEEecCCCCcchhhhhhccc--------cchHHHHHhcCCc--cCCcccccccCCCC----------
Confidence 999887667899999999988766555444331 3667776654321 11223322211110
Q ss_pred hhhhccccCCCCCCceeEEEecCC----ceeeeeEEeecCC--CCCcCCCCCcceEEEEE
Q 021437 241 RALCLCWDRQTQDLHIDWILFRGR----SLIPGSCEVVNDN--IDGYYPSSHYPIFAEFM 294 (312)
Q Consensus 241 ~~~~~~~~~~~~~~riD~I~~s~~----~~~~~~~~v~~~~--~~~~~~SDH~pV~a~~~ 294 (312)
+....+..||||||+++. .+.+..++++... ..+.++|||+||+|+|+
T Consensus 196 ------~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 196 ------TVPYVSRCRFDRIFLRSAKTAPPVTPDHMALIGMEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp ------CCSSCCEECCEEEEEECCTTSCCCEEEEEEEECCSCCTTSSCSCSBCEEEEEEE
T ss_pred ------CcCCCCCccEEEEEEeCcccccceeeeEEEEecccccCCCCCCCcccCEEEEEe
Confidence 001124578999999874 1334455555432 34567899999999996
No 6
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=3.6e-35 Score=267.91 Aligned_cols=190 Identities=17% Similarity=0.254 Sum_probs=142.9
Q ss_pred ccEEEEEeecCCCCC---------CCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccH-HHHHhcCC--CCceEeee-
Q 021437 3 VALSLMTFNLHEDQQ---------EDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQL-DYLQQCLP--AYDQFGVS- 69 (312)
Q Consensus 3 ~~l~v~T~Nv~~~~~---------~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~-~~l~~~l~--~y~~~~~~- 69 (312)
.+||||||||++... +++...|..|+..|.+.|...+|||||||||...++ +.+...|. +|.++...
T Consensus 30 ~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k 109 (398)
T 3ngq_A 30 ASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPK 109 (398)
T ss_dssp EEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEES
T ss_pred CCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHhCCceEEEecC
Confidence 479999999987532 123457999999999999999999999999987765 44555553 55555432
Q ss_pred -cCCC----CCCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCce------EEEEEeeeccC--------
Q 021437 70 -RKGP----EDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCI------ATWATFQLKGV-------- 130 (312)
Q Consensus 70 -~~~~----~~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~------~~~~~~~~~~~-------- 130 (312)
+... +...++++||||++++|++++.+.++|++.|..+ +.+|++.++|+ ++++.|+.+.+
T Consensus 110 ~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~-s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~ 188 (398)
T 3ngq_A 110 SRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMAN-SDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKP 188 (398)
T ss_dssp CTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHT-CTTCHHHHHTTTTCCCEEEEEEEEECGGGC------
T ss_pred CCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccc-cccchhhhcceeeccceeEEEEEEEccccccccccc
Confidence 2100 1134689999999999999999999999877655 45666655553 45566766531
Q ss_pred --CCCCcEEEEEeccCCC--ccHHHHHHHHHHHHHHHHhcC--------------CCCCEEEEecCCCCCCchhHHhhhc
Q 021437 131 --EPPGFSFQIVNTNMDE--FTARARRRSALLTWQHIASLP--------------PSLPVIYCGGFNTQKESTTGRFLLG 192 (312)
Q Consensus 131 --~~~g~~~~v~~~Hl~~--~~~~~r~~~~~~l~~~l~~~~--------------~~~pvIv~GDfN~~~~~~~~~~l~~ 192 (312)
...++.|.|+||||.+ .....|..|+..|++.|+++. ...|+|||||||+.|++..|+.|..
T Consensus 189 ~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s~vy~~L~~ 268 (398)
T 3ngq_A 189 IHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSN 268 (398)
T ss_dssp -----CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTSHHHHHHHH
T ss_pred ccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCCCHHHHHHhc
Confidence 0126789999999987 577899999999999987641 2469999999999999999999986
Q ss_pred c
Q 021437 193 R 193 (312)
Q Consensus 193 ~ 193 (312)
+
T Consensus 269 G 269 (398)
T 3ngq_A 269 G 269 (398)
T ss_dssp T
T ss_pred C
Confidence 4
No 7
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=100.00 E-value=3.1e-33 Score=241.14 Aligned_cols=237 Identities=17% Similarity=0.245 Sum_probs=160.5
Q ss_pred CccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHHHhcCCCCceEeeecCCCCCCCCceE
Q 021437 2 SVALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGPEDTSDEHC 81 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~~~~~~ 81 (312)
+++||||||||++.. ...|..|...|.++|++.+|||||||||...+++.+.+.+..|.++..+. ....++
T Consensus 11 ~~~l~v~s~Ni~g~~----~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~~~~~~~~~~-----~~~~g~ 81 (256)
T 4fva_A 11 GFEVSVMSWNIDGLD----GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQSLYKIYYSNK-----GCQYYT 81 (256)
T ss_dssp TCEEEEEEEECCTTC----CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGGGTEEEEESST-----TSSSEE
T ss_pred CCEEEEEEEecCCCC----CcCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHHHHHhcCCceEeecCC-----CCCcce
Confidence 468999999997542 34688899999999999999999999999888888877665444443222 245678
Q ss_pred EEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCcc--HHHHHHHHHHH
Q 021437 82 TIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFT--ARARRRSALLT 159 (312)
Q Consensus 82 ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~--~~~r~~~~~~l 159 (312)
++++++ +++......+.+...+. .+....+.+... |+.+.|+|+|+++.. ...|..|++.+
T Consensus 82 ~il~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-----g~~~~v~~~Hl~~~~~~~~~~~~q~~~~ 144 (256)
T 4fva_A 82 AILVSK-MFDVEKHDVIHFQNSGM-----------YRTLQILEGSIG-----GLKVFLLNTHLESTREHRPQRCAQFGFC 144 (256)
T ss_dssp EEEEET-TCEEEEEEEEECTTCSS-----------CCEEEEEEEEET-----TEEEEEEEEECCCSGGGHHHHHHHHHHH
T ss_pred EEEEee-cccceecccccCCCCcc-----------cceeEEEEEEeC-----CeEEEEEEecCCCCCcchHHHHHHHHHH
Confidence 888874 56766666554433211 244444555444 789999999998843 44566666666
Q ss_pred HHHHHh---cCCCCCEEEEecCCCCCCchhHHhhhcccccCCccccccchhhhhhhcCCCCCcccccCCCCCCcchhHHH
Q 021437 160 WQHIAS---LPPSLPVIYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPNARMRKNVSLIRTYHGFKGNKQGALEFL 236 (312)
Q Consensus 160 ~~~l~~---~~~~~pvIv~GDfN~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 236 (312)
.+.+.. ..++.|+|+|||||..+.+..... . .+.|+|..+.... +...||.....+...
T Consensus 145 ~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~~-------~----~~~d~~~~~~~~~--~~~~T~~~~~~~~~~----- 206 (256)
T 4fva_A 145 MDKVREIIAQNPGALVFFGGDLNLRDEEVSRVP-------D----GVKDAWEAAGSDN--KTKFTWDTFKNDNKQ----- 206 (256)
T ss_dssp HHHHHHHHHHSTTCEEEEEEECCCCGGGCCCCC-------T----TCEEHHHHTTCCG--GGCCSEETTTCCSSC-----
T ss_pred HHHhhhhhhccCCCcEEEeccCCCCcchhhhhh-------c----chhhHHHHhCCCC--CCCcccccccCcccc-----
Confidence 665543 345689999999998765532211 1 3788887764322 334566443322110
Q ss_pred HHHHhhhhccccCCCCCCceeEEEecCCceeeeeEEeecCC---CCCcCCCCCcceEEEEE
Q 021437 237 KLIFRALCLCWDRQTQDLHIDWILFRGRSLIPGSCEVVNDN---IDGYYPSSHYPIFAEFM 294 (312)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~~~~~~v~~~~---~~~~~~SDH~pV~a~~~ 294 (312)
....+..||||||+++ .+++.+++++... ..+.++|||+||+|+|+
T Consensus 207 -----------~~~~~~~RiD~I~~~~-~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 207 -----------GFHGAKMRFDRLYWSG-PLDKVKFTLEGRQRIRSCLCFPSDHWAINATFF 255 (256)
T ss_dssp -----------SCCSCEECCEEEEEES-SCCEEEEEEECCSCCTTTCSCSCSSCEEEEEEE
T ss_pred -----------cCCCCCcCeEEEEEcC-CceeeEEEEEeeEecCCCCCCcCcccCEEEEEc
Confidence 0011457899999998 6888888887543 23567899999999996
No 8
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=100.00 E-value=1.3e-33 Score=245.56 Aligned_cols=243 Identities=16% Similarity=0.158 Sum_probs=167.7
Q ss_pred CccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCccc------------------HHHHHhcC-CC
Q 021437 2 SVALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQ------------------LDYLQQCL-PA 62 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~------------------~~~l~~~l-~~ 62 (312)
|.+|||+||||+.... ..+..+...|.+.|++.+||||||||+.... .+.|.+.. .+
T Consensus 1 s~~l~v~t~Ni~~~~~----~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~ 76 (266)
T 3teb_A 1 SNAMKILTVNVHAWLE----ENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTD 76 (266)
T ss_dssp --CEEEEEEECCTTCS----TTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSC
T ss_pred CCceEEEEEecccccC----cchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCC
Confidence 5689999999986532 2456788999999999999999999996322 23333322 24
Q ss_pred CceEeeecCCCCCCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEec
Q 021437 63 YDQFGVSRKGPEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNT 142 (312)
Q Consensus 63 y~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~ 142 (312)
|.++......+......+++|+. +++++....+.++..+..++ + ..|.+.++.+... |+.+.|+|+
T Consensus 77 y~~~~~~~~~~~~~~~~g~ails---r~~~~~~~~~~~~~~~~~~~---~---~~r~~~~~~~~~~-----~~~~~v~~~ 142 (266)
T 3teb_A 77 YYLHWSNSHIGFGKYNEGVAVIT---RHKIKAEDEFYCTFAQSVRT---I---SARRIVSITINYE-----GQDIEFYSC 142 (266)
T ss_dssp CEEEEEEEEECSTTEEEEEEEEE---SSCCSEEEEEECSSCCCTTC---T---TCCEEEEEEEEET-----TEEEEEEEE
T ss_pred eEEEEeccccCccccCCeEEEEE---CceecCceeEEeCCCCCCCC---c---ccceEEEEEEEeC-----CeEEEEEEe
Confidence 66653221111122345788884 46777778888877665432 1 2377777787754 789999999
Q ss_pred cCCCc--cHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCC--CchhHHhhhcccccCCccccccchhhhhhhcCCCCC
Q 021437 143 NMDEF--TARARRRSALLTWQHIASLPPSLPVIYCGGFNTQK--ESTTGRFLLGRSREHGVVGDMRDAWPNARMRKNVSL 218 (312)
Q Consensus 143 Hl~~~--~~~~r~~~~~~l~~~l~~~~~~~pvIv~GDfN~~~--~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~ 218 (312)
|+++. +...|..|++.+.+.+++ +.|+|||||||+.+ .+..++.+... .+.|+|..+... ..
T Consensus 143 Hl~~~~~~~~~r~~q~~~l~~~~~~---~~~~il~GDfN~~~~~~~~~~~~l~~~--------~l~d~~~~~~~~---~~ 208 (266)
T 3teb_A 143 HMNLPNCETEDMGKNIQTILNRTQN---SNLKILMGDFNTDAIGNVAAYENILSQ--------GLFDTYVMAEKK---DD 208 (266)
T ss_dssp ECCCTTCTTCCHHHHHHHHHTSSCS---CCEEEEEEECCCCTTTCHHHHHHHHTT--------TCEEHHHHCSEE---CC
T ss_pred cCCCccCChHHHHHHHHHHHHHHhc---CCcEEEEeECCCCCCCCCcHHHhhccc--------cccchHHhhccc---cC
Confidence 99885 556788888888777665 57999999999999 88899988763 288998866433 12
Q ss_pred cccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCCceeeeeEEeecCCCCCcCCCCCcceEEEEEe
Q 021437 219 IRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSLIPGSCEVVNDNIDGYYPSSHYPIFAEFML 295 (312)
Q Consensus 219 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~~~~~~v~~~~~~~~~~SDH~pV~a~~~~ 295 (312)
..||...... |....+..||||||+++ .+.+..++++....++..+|||+||+++|++
T Consensus 209 ~~t~~~~~~~------------------~~~~~~~~riD~i~~s~-~~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 209 GITVDKSIHG------------------WDNDKAKKRLDYIFSNK-ELKVKESKVIFNNKNKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp CCCEECC------------------------CTTEECCEEEEESS-CCCEEEEEEESSSSSSCCCSSSCEEEEEECC
T ss_pred CccccCccCC------------------cCcCCcCCeeEEEEeCC-CeEEEEEEEEeCCCCCCCcCCccCEEEEEEC
Confidence 2343211000 11112568999999998 6888999998875555678999999999874
No 9
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=100.00 E-value=5.4e-33 Score=252.67 Aligned_cols=237 Identities=16% Similarity=0.251 Sum_probs=166.1
Q ss_pred CccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHHHhcCCCCceEeeecCCCCCCCCceE
Q 021437 2 SVALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGPEDTSDEHC 81 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~~~~~~ 81 (312)
+..|||+||||++.. ...+..|+..|+++|++.+|||||||||...++..|...+..|.++..+. ..+.++
T Consensus 117 ~~~lkVlSWNI~Gl~----~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~l~~~~~~y~~~~~~~-----~~~~G~ 187 (362)
T 4gew_A 117 GFEVSVMSWNIDGLD----GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQSLYKIYYSNK-----GCQYYT 187 (362)
T ss_dssp TCEEEEEEEECCTTC----CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGGGTEEEEESST-----TSSSEE
T ss_pred CCeEEEEEEEeCCCC----CcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHHHHHhcCCceEEeCCC-----CCCceE
Confidence 467999999998542 34678899999999999999999999999888888887777777665432 245678
Q ss_pred EEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCcc--HHHHHHHHHHH
Q 021437 82 TIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFT--ARARRRSALLT 159 (312)
Q Consensus 82 ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~--~~~r~~~~~~l 159 (312)
+|++++ ++++.....+.+.. ....|.+.++.+... |..|.|+|+||++.. ...|..|++.+
T Consensus 188 aIlsk~-~i~~~~~~~~~~~~-----------~~~~r~~l~~~i~~~-----g~~l~v~ntHL~s~~~~~~~R~~Q~~~l 250 (362)
T 4gew_A 188 AILVSK-MFDVEKHDVIHFQN-----------SGMYRTLQILEGSIG-----GLKVFLLNTHLESTREHRPQRCAQFGFC 250 (362)
T ss_dssp EEEEET-TEEEEEEEEEECTT-----------CSSCCEEEEEEEEET-----TEEEEEEEEECCCSGGGHHHHHHHHHHH
T ss_pred EEEEec-cCccccccccCCCC-----------CcccceEEEEEEEEC-----CEEEEEEEecCCccccchhHHHHHHHHH
Confidence 999884 56666655443321 112355555666554 789999999998843 45677788877
Q ss_pred HHHHHhc---CCCCCEEEEecCCCCCCchhHHhhhcccccCCccccccchhhhhhhcCCCCCcccccCCCCCCcchhHHH
Q 021437 160 WQHIASL---PPSLPVIYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPNARMRKNVSLIRTYHGFKGNKQGALEFL 236 (312)
Q Consensus 160 ~~~l~~~---~~~~pvIv~GDfN~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 236 (312)
.+.+..+ .++.|+|||||||..+.+.... . . .+.|+|..+.... +...||.....+...
T Consensus 251 ~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~~--~-----~----gl~Da~~~~~~~~--~~~~Tw~~~~n~~~~----- 312 (362)
T 4gew_A 251 MDKVREIIAQNPGALVFFGGDLNLRDEEVSRV--P-----D----GVKDAWEAAGSDN--KTKFTWDTFKNDNKQ----- 312 (362)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECCCCGGGCCCC--C-----T----TCEEHHHHTTCCG--GGCCSEETTTCTTSC-----
T ss_pred HHHhHhhhhcCCCCCeEEeecCCCCCcccchh--c-----c----hHHHHHHHhCCCC--CCCcCcccccCcccc-----
Confidence 7776543 4568999999999877653211 1 1 3889998764322 334566544322110
Q ss_pred HHHHhhhhccccCCCCCCceeEEEecCCceeeeeEEeecCC---CCCcCCCCCcceEEEEE
Q 021437 237 KLIFRALCLCWDRQTQDLHIDWILFRGRSLIPGSCEVVNDN---IDGYYPSSHYPIFAEFM 294 (312)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~~~~~~v~~~~---~~~~~~SDH~pV~a~~~ 294 (312)
+ ...+..||||||+++ .+.+.+++++... ..+.++|||+||+|+|+
T Consensus 313 ----------~-~~~~~~RIDyIf~s~-~l~~~~~~vi~~~ri~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 313 ----------G-FHGAKMRFDRLYWSG-PLDKVKFTLEGRQRIRSCLCFPSDHWAINATFF 361 (362)
T ss_dssp ----------C-SSCCEECCEEEEEES-SCCEEEEEEECCSCCTTTSSCSCSSCEEEEEEE
T ss_pred ----------c-CCCCCcceEEEEEcC-CcceeEEEEEeeeecCCCCCCCCcccCEEEEEc
Confidence 0 011457999999998 6888888887543 23567899999999996
No 10
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.97 E-value=7.2e-30 Score=226.24 Aligned_cols=250 Identities=13% Similarity=0.107 Sum_probs=157.2
Q ss_pred CccEEEEEeecCCCCCCCCCCcH--HHHHHHHHHHHhhcCCcEEEEcCCCccc-HHHHHhcC-CCCceE--eeecCCCC-
Q 021437 2 SVALSLMTFNLHEDQQEDSPNSW--VKRRDLCISVITSYSPMILCTQQGVKSQ-LDYLQQCL-PAYDQF--GVSRKGPE- 74 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~~~~w--~~r~~~i~~~i~~~~pDIi~LQEv~~~~-~~~l~~~l-~~y~~~--~~~~~~~~- 74 (312)
|.+|||+||||+..... ....| ..|.+.+.+.|...+|||||||||...+ .+.+.+.| ..|.|. ..+....+
T Consensus 8 ~~~lrv~t~Ni~~~~~~-~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 86 (301)
T 1zwx_A 8 PGNFKITSHNVYLFSRN-IYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGW 86 (301)
T ss_dssp CCSCEEEEEEEEECCTT-TSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTC
T ss_pred CCceEEEEEECccCCcc-ccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCccccccCCccccc
Confidence 56799999999986321 12245 6788888888899999999999998654 34555444 334442 11110000
Q ss_pred ----------CCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccC
Q 021437 75 ----------DTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNM 144 (312)
Q Consensus 75 ----------~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl 144 (312)
.....+++|+ +++++.....+.++... +++....|.++++.+... |+.+.|+|+||
T Consensus 87 ~~~~g~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~-----g~~~~v~~~Hl 152 (301)
T 1zwx_A 87 DKTEGNYSNFALEDGGVAVV---SQWPIVEKSQHIFQRGG------GADRLSNKGFAYVKIMKN-----GKPYHIIGTHT 152 (301)
T ss_dssp SEEEC-----CCBCCCCEEE---ESSCEEEEEEEECSCCC------GGGGGBCCEEEEEEEEET-----TEEEEEEEEEC
T ss_pred cccccccccccccCCCEEEE---ecCCcccceEEEecCCC------CcccccCCCeEEEEEEEC-----CEEEEEEEecC
Confidence 0123467888 45788877766665321 122234677888888764 78999999999
Q ss_pred CCc--------cHHHHHHHHHHHHHHHHhc--CCCCCEEEEecCCCCCCchhHHhhhcccccCCcccccc--chhhhhhh
Q 021437 145 DEF--------TARARRRSALLTWQHIASL--PPSLPVIYCGGFNTQKESTTGRFLLGRSREHGVVGDMR--DAWPNARM 212 (312)
Q Consensus 145 ~~~--------~~~~r~~~~~~l~~~l~~~--~~~~pvIv~GDfN~~~~~~~~~~l~~~~~~~g~~~~l~--d~~~~~~~ 212 (312)
++. ....|..|++.+.+++++. ..+.|+|||||||+.+.+..|+.+.+.. + +. |+|.
T Consensus 153 ~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~~l~~~~---~----~~~~d~~~---- 221 (301)
T 1zwx_A 153 QADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKLL---N----VSSPANFN---- 221 (301)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHHHHHHHH---T----BCCCTTCC----
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCcHHHHHHHHHc---C----CCCCcccc----
Confidence 875 4567899999999999874 3467999999999999999998887531 1 22 5543
Q ss_pred cCCCCCcccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCCceee------------eeEEeecCCC--
Q 021437 213 RKNVSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSLIP------------GSCEVVNDNI-- 278 (312)
Q Consensus 213 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~~------------~~~~v~~~~~-- 278 (312)
+...||...... +...+ |.. .+..||||||+++..... ..+++.....
T Consensus 222 ----g~~~T~~~~~n~------~~~~t-------~~~-~~~~rID~I~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 283 (301)
T 1zwx_A 222 ----GQMATWDPTTNS------MLKES-------YPK-AAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTY 283 (301)
T ss_dssp ----TTSCSBCTTTCH------HHHHH-------CTT-SCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEE
T ss_pred ----CCCceECCccCc------ccccc-------CCC-CCcceEeEEEEeCCCCCcccccceeeccccccceeecccCCc
Confidence 223455321100 00001 111 256899999999842211 0122221110
Q ss_pred CCcCCCCCcceEEEEEe
Q 021437 279 DGYYPSSHYPIFAEFML 295 (312)
Q Consensus 279 ~~~~~SDH~pV~a~~~~ 295 (312)
....+|||+||+|+|++
T Consensus 284 ~~~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 284 TYQDFSDHYPVVGFTDN 300 (301)
T ss_dssp EECCSSSSCCEEEEEC-
T ss_pred cccCCCCCccEEEEEec
Confidence 11368999999999976
No 11
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.97 E-value=2.1e-29 Score=225.38 Aligned_cols=178 Identities=13% Similarity=0.077 Sum_probs=123.8
Q ss_pred CccEEEEEeecCCCCC-CCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCccc-HHHHHhcC-CCCceEe--eecCCCCCC
Q 021437 2 SVALSLMTFNLHEDQQ-EDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQ-LDYLQQCL-PAYDQFG--VSRKGPEDT 76 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~-~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~-~~~l~~~l-~~y~~~~--~~~~~~~~~ 76 (312)
+.+||||||||++... .++...|..|.+.|..++...+|||||||||.... .+.+.+.| ..|.|.. .+....+..
T Consensus 27 ~~~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~~~g~~~~~~~ 106 (317)
T 3i41_A 27 DTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWD 106 (317)
T ss_dssp -CCCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCS
T ss_pred CCceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccccCCccccCcc
Confidence 4679999999998642 33345799999999999989999999999998653 34455555 2354431 211100100
Q ss_pred -----------CCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCC
Q 021437 77 -----------SDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMD 145 (312)
Q Consensus 77 -----------~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~ 145 (312)
...+++++. +++++....+.+... .+++....|.+.++.+... |+.|.|+|+||+
T Consensus 107 ~~~~~y~~~~~~~~G~~ilS---r~Pi~~~~~~~~~~~------~~~d~~~~r~~~~~~i~~~-----g~~v~v~~~Hl~ 172 (317)
T 3i41_A 107 KTEGSYSSTVAEDGGVAIVS---KYPIKEKIQHVFKSG------CGFDNDSNKGFVYTKIEKN-----GKNVHVIGTHTQ 172 (317)
T ss_dssp EEEESCCSSCSBCCCCEEEE---SSCEEEEEEEECSCC------CSSGGGBCCEEEEEEEEET-----TEEEEEEEEECC
T ss_pred CcccccccccccCCccEEEe---CCCCccceeEECCCC------CCcccccCcceEEEEEEEC-----CEEEEEEEECCC
Confidence 113556663 466666555544321 1223345677777777654 789999999998
Q ss_pred Ccc--------HHHHHHHHHHHHHHHHhc--CCCCCEEEEecCCCCCCchhHHhhhcc
Q 021437 146 EFT--------ARARRRSALLTWQHIASL--PPSLPVIYCGGFNTQKESTTGRFLLGR 193 (312)
Q Consensus 146 ~~~--------~~~r~~~~~~l~~~l~~~--~~~~pvIv~GDfN~~~~~~~~~~l~~~ 193 (312)
+.. ...|.+|+..|.+++++. ..+.|+|||||||+.+.+.+|+.|.+.
T Consensus 173 ~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s~~~~~l~~~ 230 (317)
T 3i41_A 173 SEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKN 230 (317)
T ss_dssp CCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHHHHHHHHH
T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCCHHHHHHHHh
Confidence 753 678999999999999874 356899999999999999999998763
No 12
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.96 E-value=1.3e-28 Score=218.63 Aligned_cols=176 Identities=15% Similarity=0.110 Sum_probs=119.6
Q ss_pred CccEEEEEeecCCCCCCCCCCcH--HHHHHHHHHHHhhcCCcEEEEcCCCccc-HHHHHhcC-CCCceEe--eecC----
Q 021437 2 SVALSLMTFNLHEDQQEDSPNSW--VKRRDLCISVITSYSPMILCTQQGVKSQ-LDYLQQCL-PAYDQFG--VSRK---- 71 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~~~~w--~~r~~~i~~~i~~~~pDIi~LQEv~~~~-~~~l~~~l-~~y~~~~--~~~~---- 71 (312)
+.+||||||||++..... ...| ..|.+.+...+...+||||||||+...+ .+.+.+.| ..|.|.. .+..
T Consensus 7 ~~~lrv~t~Ni~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 85 (306)
T 2ddr_A 7 NDTLKVMTHNVYMLSTNL-YPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSE 85 (306)
T ss_dssp CCEEEEEEEEEEECCTTT-CTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTT
T ss_pred CCEEEEEEEECccCcccc-cCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCceeeccCcccccc
Confidence 467999999999865321 2245 5678888888888999999999998765 34554333 3344421 1110
Q ss_pred --------CCCCCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEecc
Q 021437 72 --------GPEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTN 143 (312)
Q Consensus 72 --------~~~~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~H 143 (312)
........+++++. ++++.....+.+.... +++....|.++++.+... |+.+.|+|+|
T Consensus 86 ~~~~~~~~~~~~~~~~G~ailS---r~pi~~~~~~~~~~~~------~~~~~~~r~~~~~~i~~~-----g~~~~v~~~H 151 (306)
T 2ddr_A 86 WDKTLGNYSSSTPEDGGVAIVS---KWPIAEKIQYVFAKGC------GPDNLSNKGFVYTKIKKN-----DRFVHVIGTH 151 (306)
T ss_dssp SSEEEESCCTTCSSCCCCEEEE---SSCEEEEEEEECSCCC----------CCCCEEEEEEEEET-----TEEEEEEEEE
T ss_pred cccccccccccCccCCeEEEEE---CCCcccccEEEcCCCC------CcchhcCCCeEEEEEEeC-----CEEEEEEEEC
Confidence 00011234678874 4677666655553211 122334688888888765 7799999999
Q ss_pred CCCc--------cHHHHHHHHHHHHHHHHhc--CCCCCEEEEecCCCCC------CchhHHhhhc
Q 021437 144 MDEF--------TARARRRSALLTWQHIASL--PPSLPVIYCGGFNTQK------ESTTGRFLLG 192 (312)
Q Consensus 144 l~~~--------~~~~r~~~~~~l~~~l~~~--~~~~pvIv~GDfN~~~------~~~~~~~l~~ 192 (312)
+++. ....|..|++.+.+++++. ..+.|+|||||||+.+ .+..|+.+..
T Consensus 152 l~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~s~~~~~l~~ 216 (306)
T 2ddr_A 152 LQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFK 216 (306)
T ss_dssp CCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSHHHHHHH
T ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccCCHHHHHHHH
Confidence 9875 4567899999999999875 3467999999999999 7788887765
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.96 E-value=9.9e-29 Score=214.87 Aligned_cols=228 Identities=14% Similarity=0.123 Sum_probs=148.0
Q ss_pred EEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHH---HHHhcCCCCceEeeecCCCCCCCCceE
Q 021437 5 LSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLD---YLQQCLPAYDQFGVSRKGPEDTSDEHC 81 (312)
Q Consensus 5 l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~---~l~~~l~~y~~~~~~~~~~~~~~~~~~ 81 (312)
|||+||||+.. ..|.+.|.+.|++.+||||||||+...+.. .+... .+|.++..+.. ...++
T Consensus 1 lrv~t~Nv~~~---------~~~~~~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~-~gy~~~~~~~~-----~~~G~ 65 (268)
T 1ako_A 1 MKFVSFNINGL---------RARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAK-LGYNVFYHGQK-----GHYGV 65 (268)
T ss_dssp CEEEEEECSCG---------GGCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHH-TTCEEEEEEET-----TEEEE
T ss_pred CEEEEEehhHH---------HHHHHHHHHHHHHcCCCEEEEEeccCChhhCCHhHhcc-CCCcEEEeCCC-----CcceE
Confidence 69999999753 235678999999999999999999865432 22222 47887765432 24678
Q ss_pred EEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccH-------HHHHH
Q 021437 82 TIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTA-------RARRR 154 (312)
Q Consensus 82 ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-------~~r~~ 154 (312)
+|+++...+.+.. .+ +.. .....|.++++.+... +..|.|+|+|+++... ..|.+
T Consensus 66 ailsr~~~~~~~~----~~---~~~------~~~~~~~~~~~~~~~~-----~~~~~v~~~Hl~~~~~~~~~~~~~~r~~ 127 (268)
T 1ako_A 66 ALLTKETPIAVRR----GF---PGD------DEEAQRRIIMAEIPSL-----LGNVTVINGYFPQGESRDHPIKFPAKAQ 127 (268)
T ss_dssp EEEESSCCSEEEE----SS---TTC------CHHHHTTEEEEEEEET-----TEEEEEEEEECCCCCBTTCTTHHHHHHH
T ss_pred EEEEecCcceeee----CC---CCc------ccccCCCEEEEEEEcC-----CCeEEEEEEEecCCCCcccchhHHHHHH
Confidence 9998765444321 11 110 0112355566777765 5699999999987532 35778
Q ss_pred HHHHHHHHHHhc-CCCCCEEEEecCCCCCCchhHH--------------------------hhhcccccCCccccccchh
Q 021437 155 SALLTWQHIASL-PPSLPVIYCGGFNTQKESTTGR--------------------------FLLGRSREHGVVGDMRDAW 207 (312)
Q Consensus 155 ~~~~l~~~l~~~-~~~~pvIv~GDfN~~~~~~~~~--------------------------~l~~~~~~~g~~~~l~d~~ 207 (312)
+++.+.+.+++. ..+.|+|||||||+.+.+..+. .+.. . .|.|+|
T Consensus 128 ~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~----~----gl~D~~ 199 (268)
T 1ako_A 128 FYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMS----W----GLVDTF 199 (268)
T ss_dssp HHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHH----T----TEEEHH
T ss_pred HHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhccCCCcCcCHHHHHHHHHHhc----C----CCEEeE
Confidence 888888888875 3467999999999988765432 1111 1 378888
Q ss_pred hhhhhcCCCCCcccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCCce--eeeeEEeecCCCCCcCCCC
Q 021437 208 PNARMRKNVSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSL--IPGSCEVVNDNIDGYYPSS 285 (312)
Q Consensus 208 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~--~~~~~~v~~~~~~~~~~SD 285 (312)
+...... +..+||..+..... .+ ..+.||||||+++ .+ .+.++++.........+||
T Consensus 200 ~~~~~~~--~~~~T~~~~~~~~~----------~~--------~~~~riD~il~s~-~~~~~~~~~~i~~~~~~~~~~SD 258 (268)
T 1ako_A 200 RHANPQT--ADRFSWFDYRSKGF----------DD--------NRGLRIDLLLASQ-PLAECCVETGIDYEIRSMEKPSD 258 (268)
T ss_dssp HHHSTTC--CSCCSBCCTTTTHH----------HH--------TCCBCCEEEEEEH-HHHTTEEEEEECHHHHTSSSCCS
T ss_pred hhhCCCC--CCCeeEeCCcCCcc----------cc--------CceEEEEEEEeCH-HHHHHHHhceechhhcCCCCCCC
Confidence 7654321 22356644432210 00 1468999999998 44 3457777653223346899
Q ss_pred CcceEEEEE
Q 021437 286 HYPIFAEFM 294 (312)
Q Consensus 286 H~pV~a~~~ 294 (312)
|+||+++|+
T Consensus 259 H~pv~~~l~ 267 (268)
T 1ako_A 259 HAPVWATFR 267 (268)
T ss_dssp BCCEEEEEC
T ss_pred cccEEEEcc
Confidence 999999985
No 14
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.96 E-value=8.6e-28 Score=207.51 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=143.9
Q ss_pred EEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHHHhc--CCCCceEeeecCCCCCCCCceEE
Q 021437 5 LSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQC--LPAYDQFGVSRKGPEDTSDEHCT 82 (312)
Q Consensus 5 l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~--l~~y~~~~~~~~~~~~~~~~~~a 82 (312)
|||+||||+. |..|.+.|.+.|++.+||||||||+...+...+.+. ..+|.++..+. ....+++
T Consensus 1 lrv~t~Nv~~---------~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~~-----~~~~G~a 66 (256)
T 2jc4_A 1 MKITTWNVNS---------LNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQ-----KTYNGVA 66 (256)
T ss_dssp CEEEEEECSC---------HHHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEECC-----SSSCCEE
T ss_pred CEEEEEEcCC---------cHHHHHHHHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEECCC-----CcceEEE
Confidence 6999999973 557788999999999999999999987643221111 25787665432 1245789
Q ss_pred EEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccH------HHHHHHH
Q 021437 83 IFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTA------RARRRSA 156 (312)
Q Consensus 83 i~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~------~~r~~~~ 156 (312)
|+++.. +..... .+ |... .....|++. +.+ + .+.|+|+|+++... ..|.+++
T Consensus 67 ilsr~~-~~~~~~---~~---~~~~-----~~~~~~~~~-~~~--------~-~~~v~~~h~~~~~~~~~~~~~~r~~~~ 124 (256)
T 2jc4_A 67 IVSRSV-PQDVHF---GL---PALP-----DDPQRRVIA-ATV--------S-GVRVINVYCVNGEALDSPKFKYKEQWF 124 (256)
T ss_dssp EEESSC-CEEEEE---SC---TTST-----TCCSCCEEE-EEE--------T-TEEEEEEECCCCCSTTSHHHHHHHHHH
T ss_pred EEECCC-hHHhee---cC---CCCc-----cCCcCcEEE-EEe--------C-CEEEEEEEecCCCCCCcHhHHHHHHHH
Confidence 998753 222211 11 2110 012235433 343 2 69999999988532 2356677
Q ss_pred HHHHHHHHhc-CCCCCEEEEecCCCCCCchh--------------------HHhhhcccccCCccccccchhhhhhhcCC
Q 021437 157 LLTWQHIASL-PPSLPVIYCGGFNTQKESTT--------------------GRFLLGRSREHGVVGDMRDAWPNARMRKN 215 (312)
Q Consensus 157 ~~l~~~l~~~-~~~~pvIv~GDfN~~~~~~~--------------------~~~l~~~~~~~g~~~~l~d~~~~~~~~~~ 215 (312)
+.+.+.+++. ..+.|+|||||||+.+.+.. ++.+.. . .|.|+|+.....
T Consensus 125 ~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~----~----~l~D~~~~~~~~-- 194 (256)
T 2jc4_A 125 AALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLLD----L----GLTDSLRQVHPE-- 194 (256)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHHHHHHHHHHT----T----TCEEHHHHHCCS--
T ss_pred HHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhHhCCCCCcCHHHHHHHHHHHh----c----CcEEhhhhhCCC--
Confidence 7777777765 34679999999999887522 333332 2 388988765322
Q ss_pred CCCcccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCCcee--eeeEEeecCCCCCcCCCCCcceEEEE
Q 021437 216 VSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSLI--PGSCEVVNDNIDGYYPSSHYPIFAEF 293 (312)
Q Consensus 216 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~--~~~~~v~~~~~~~~~~SDH~pV~a~~ 293 (312)
....||..+...... ...+.||||||+++ .+. +.+++++........+|||+||+++|
T Consensus 195 -~~~~T~~~~~~~~~~------------------~~~~~rID~i~~s~-~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l 254 (256)
T 2jc4_A 195 -GAFYTWFDYRGAMFQ------------------RKLGLRIDHILVSP-AMAAALKDVRVDLETRALERPSDHAPVTAEF 254 (256)
T ss_dssp -SCCCCBCCTTTTHHH------------------HTCCBCCEEEEECH-HHHTTEEEEEECHHHHTSSSCCSBCCEEEEE
T ss_pred -CCceeeEcCCCCccc------------------cCcEEEEEEEEECH-HHHhheeEEEEEhhcccCCCCCCcccEEEEe
Confidence 224576554332100 01468999999998 465 77888876433345689999999998
Q ss_pred Ee
Q 021437 294 ML 295 (312)
Q Consensus 294 ~~ 295 (312)
++
T Consensus 255 ~l 256 (256)
T 2jc4_A 255 DW 256 (256)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 15
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=7.1e-30 Score=251.87 Aligned_cols=187 Identities=17% Similarity=0.252 Sum_probs=43.3
Q ss_pred cEEEEEeecCCCCCCC---------CCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHH-HhcCC--CCceEeeecC
Q 021437 4 ALSLMTFNLHEDQQED---------SPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYL-QQCLP--AYDQFGVSRK 71 (312)
Q Consensus 4 ~l~v~T~Nv~~~~~~~---------~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l-~~~l~--~y~~~~~~~~ 71 (312)
.++++|||+.+..... +...|..|+..|.+.|...+|||||||||...++..+ ...|. +|.++...+.
T Consensus 394 ~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~~~ 473 (727)
T 4b8c_D 394 TFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKA 473 (727)
T ss_dssp --------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC----
T ss_pred ceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEeccC
Confidence 5789999998632111 1236999999999999999999999999997665433 33443 5555542221
Q ss_pred C------CCCCCCceEEEEEeCCCcEEEeeeeEeccCCCCCC----CCc-ccC--ccCCceEEEEEeeeccCCCCCcEEE
Q 021437 72 G------PEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVP----GSK-AWG--AEVPCIATWATFQLKGVEPPGFSFQ 138 (312)
Q Consensus 72 ~------~~~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~----~~~-~~~--~~~~r~~~~~~~~~~~~~~~g~~~~ 138 (312)
. .+...++++||||++++|++++...+.++...... ... .+. ....|+++++.++.+.+ |+.|.
T Consensus 474 ~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~~---g~~l~ 550 (727)
T 4b8c_D 474 RAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPS---GDTIW 550 (727)
T ss_dssp ------------CCCCEEEC------------------------------------------------------------
T ss_pred CcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchhhcccHHHHhhcccCCcEEEEEEEeecCC---CceEE
Confidence 0 01235678999999999999998887775321110 000 000 11236888888887655 88999
Q ss_pred EEeccCCCc--cHHHHHHHHHHHHHHHHhcC------------CCCCEEEEecCCCCCCchhHHhhhcc
Q 021437 139 IVNTNMDEF--TARARRRSALLTWQHIASLP------------PSLPVIYCGGFNTQKESTTGRFLLGR 193 (312)
Q Consensus 139 v~~~Hl~~~--~~~~r~~~~~~l~~~l~~~~------------~~~pvIv~GDfN~~~~~~~~~~l~~~ 193 (312)
|+|||+.+. +...|..++..++++++++. .+.|+|||||||+.|.+.+|+.+..+
T Consensus 551 V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~~~~~l~~~ 619 (727)
T 4b8c_D 551 AVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTG 619 (727)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCCcceEeeecC
Confidence 999999874 56788999999888887651 35699999999999999999988653
No 16
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.95 E-value=6.8e-27 Score=199.56 Aligned_cols=217 Identities=16% Similarity=0.135 Sum_probs=137.5
Q ss_pred CCccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCccc--HHHHHhcCCCCceEeeecCCCCCCCC
Q 021437 1 MSVALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQ--LDYLQQCLPAYDQFGVSRKGPEDTSD 78 (312)
Q Consensus 1 ~~~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~--~~~l~~~l~~y~~~~~~~~~~~~~~~ 78 (312)
++++|||+||||+.... ..|++.+.+.|++.+||||||||+.... ...+ .+.+|.++..... ....
T Consensus 4 ~~~~lri~t~Nv~g~~~-------~~~~~~~~~~i~~~~~DIv~LQE~~~~~~~~~~l--~~~~y~~~~~~~~---~~~~ 71 (238)
T 1vyb_A 4 SNSHITILTLNINGLNS-------AIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRL--KIKGWRKIYQANG---KQKK 71 (238)
T ss_dssp CCCCEEEEEEECSCCCS-------HHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGC--CCTTCCEEEEECC---SSSS
T ss_pred CCCcceEEEEecccCCc-------hhhHHHHHHHHHHcCCCEEEEecccCCCCCchhH--hhCCCCeEEEccC---CCCC
Confidence 46789999999975421 2456789999999999999999997542 2221 2357876543221 1123
Q ss_pred ceEEEEEeCC-CcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccHHHHHHHHH
Q 021437 79 EHCTIFYDKE-KVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTARARRRSAL 157 (312)
Q Consensus 79 ~~~ai~~~~~-~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~r~~~~~ 157 (312)
.+++|+++.+ ++.+... . .+. ..|.+. +.+... +..+.|+|+|+++.... +..+
T Consensus 72 ~Gvail~r~~~~~~~~~~---~----~~~---------~~r~i~-~~~~~~-----~~~~~v~~~y~p~~~~~---~~~~ 126 (238)
T 1vyb_A 72 AGVAILVSDKTDFKPTKI---K----RDK---------EGHYIM-VKGSIQ-----QEELTILNIYAPNTGAP---RFIK 126 (238)
T ss_dssp CCEEEEECTTCCCEEEEE---E----ECT---------TSSEEE-EEEEET-----TEEEEEEEEECCSSSHH---HHHH
T ss_pred ceEEEEEeCCCCccccce---e----EcC---------CCcEEE-EEEEeC-----CCcEEEEEEecCCCCcH---HHHH
Confidence 4799999865 4444321 0 011 125433 455443 77999999999986553 2344
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCCCCchh-------------HHhhhcccccCCccccccchhhhhhhcCCCCCcccccC
Q 021437 158 LTWQHIASLPPSLPVIYCGGFNTQKESTT-------------GRFLLGRSREHGVVGDMRDAWPNARMRKNVSLIRTYHG 224 (312)
Q Consensus 158 ~l~~~l~~~~~~~pvIv~GDfN~~~~~~~-------------~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~t~~~ 224 (312)
.+.+.+++.. +.|+|||||||+.+.+.. +..+.. .. .|.|+|+..... +...||..
T Consensus 127 ~l~~~l~~~~-~~~~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~l~d~~~~~~~~---~~~~T~~~ 195 (238)
T 1vyb_A 127 QVLSDLQRDL-DSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALH---QA----DLIDIYRTLHPK---STEYTFFS 195 (238)
T ss_dssp HHHHHTTTTC-CTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHH---HT----TEEEHHHHHCTT---CCCCSEEE
T ss_pred HHHHHHHhcc-CCCEEEEccCCCCCCccccCCCCCCcHHHHHHHHHHh---hC----CCEEhhHhhCCC---CCceeEEc
Confidence 5666666543 479999999999765421 222221 12 388888754322 33456654
Q ss_pred CCCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCCcee--eeeEEeecCCCCCcCCCCCcceEEEEE
Q 021437 225 FKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSLI--PGSCEVVNDNIDGYYPSSHYPIFAEFM 294 (312)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~--~~~~~v~~~~~~~~~~SDH~pV~a~~~ 294 (312)
+... ...||||||+++ .+. +.++++... ..|||+||+++|+
T Consensus 196 ~~~~-----------------------~~~rID~i~~s~-~~~~~~~~~~v~~~-----~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 196 APHH-----------------------TYSKIDHIVGSK-ALLSKCKRTEIITN-----YLSDHSAIKLELR 238 (238)
T ss_dssp TTTT-----------------------EEECCEEEEEEG-GGGGGEEEEEEECC-----SSSSSCEEEEEEC
T ss_pred CCCC-----------------------cccceEEEEeCH-HHHhhhhhceeecC-----CCCCcccEEEEeC
Confidence 3321 246999999998 453 677887742 5799999999873
No 17
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.95 E-value=1.9e-28 Score=212.98 Aligned_cols=170 Identities=17% Similarity=0.121 Sum_probs=107.5
Q ss_pred EEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhh--cCCcEEEEcCCCcc-c--HHHHHhcC-----CCCceEeeecCCCC
Q 021437 5 LSLMTFNLHEDQQEDSPNSWVKRRDLCISVITS--YSPMILCTQQGVKS-Q--LDYLQQCL-----PAYDQFGVSRKGPE 74 (312)
Q Consensus 5 l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~--~~pDIi~LQEv~~~-~--~~~l~~~l-----~~y~~~~~~~~~~~ 74 (312)
|||+||||++... ..| |...+.+.|.+ .+|||||||||... + +..|.+.| ..|.|+..++.+ +
T Consensus 1 lrv~s~NI~~~g~----~~~--~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~~~-~ 73 (260)
T 2a40_B 1 LKIAAFNIRTFGE----TKM--SNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLG-R 73 (260)
T ss_dssp CEEEEEEEEEESH----HHH--HSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBC-S
T ss_pred CEEEEEehhhhCC----Ccc--chHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEcccCC-C
Confidence 6999999997421 111 22333333333 28999999999864 2 56666555 358888766542 2
Q ss_pred CCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccHHHHHH
Q 021437 75 DTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTARARRR 154 (312)
Q Consensus 75 ~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~r~~ 154 (312)
...+++++++|+++++++.+.. .++..+...+ ...+.|....+.|+...+ .|+.|.|+++||++.+...+.+
T Consensus 74 ~~~~~~~~~ly~~~~v~~~~~~--~~~~~~~~~~----~~~~~R~p~~~~~~~~~~--~g~~~~vi~~Hl~~~~~~~q~~ 145 (260)
T 2a40_B 74 NSYKERYLFLFRPNKVSVLDTY--QYDDGCESCG----NDSFSREPAVVKFSSHST--KVKEFAIVALHSAPSDAVAEIN 145 (260)
T ss_dssp SSCCBEEEEEECTTTCEEEEEE--ECCTTSTTTH----HHHCSSCCEEEEEECTTS--SSSEEEEEECCCCGGGHHHHHH
T ss_pred CCCcEEEEEEEcCceeEecCce--eccCCCcCCC----CCceeeCCEEEEEEeCCC--CCceEEEEEecCCCCCcHHHHH
Confidence 2356789999999999887653 3444322211 122447667778876532 1679999999999865543333
Q ss_pred HHHHHHHHHHhcCCCCCEEEEecCCCCCC---chhHHh
Q 021437 155 SALLTWQHIASLPPSLPVIYCGGFNTQKE---STTGRF 189 (312)
Q Consensus 155 ~~~~l~~~l~~~~~~~pvIv~GDfN~~~~---~~~~~~ 189 (312)
++..+++.+.+..++.|+|||||||+.+. +..++.
T Consensus 146 ~l~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~ 183 (260)
T 2a40_B 146 SLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSS 183 (260)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEEECCCSTTTSCGGGGGG
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCCCcccccchhhh
Confidence 33333333333334579999999999887 555554
No 18
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.94 E-value=2.9e-26 Score=213.66 Aligned_cols=252 Identities=14% Similarity=0.133 Sum_probs=141.7
Q ss_pred ccEEEEEeecCCCCCCCCCCcHHHHH-HHHHHHHhhcCCcEEEEcCCCcc--cHHHHH--hcCCCCceEeeecCCCCCCC
Q 021437 3 VALSLMTFNLHEDQQEDSPNSWVKRR-DLCISVITSYSPMILCTQQGVKS--QLDYLQ--QCLPAYDQFGVSRKGPEDTS 77 (312)
Q Consensus 3 ~~l~v~T~Nv~~~~~~~~~~~w~~r~-~~i~~~i~~~~pDIi~LQEv~~~--~~~~l~--~~l~~y~~~~~~~~~~~~~~ 77 (312)
..|||+||||+..+ .|..|. ..|.++|++.+||||||||+... ++.... ..+.+|.++..++. +...
T Consensus 148 ~~LKI~TwNVnGl~------~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~~--~~~g 219 (467)
T 2j63_A 148 RMYKFITWNVAGLR------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCA--FKRG 219 (467)
T ss_dssp TEEEEEEEECSCHH------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCS--SSTT
T ss_pred CCeEEEEEEcCCCc------ccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEeccc--CCCC
Confidence 56999999997532 222221 57999999999999999999754 232211 12357876655432 1223
Q ss_pred CceEEEEEeCCCc----E-EEeeeeEeccCCCCC--CCC-----cccCccCCceEEEEEeeeccCC-CCCcEEEEEeccC
Q 021437 78 DEHCTIFYDKEKV----E-LLEGGTFWLSESPSV--PGS-----KAWGAEVPCIATWATFQLKGVE-PPGFSFQIVNTNM 144 (312)
Q Consensus 78 ~~~~ai~~~~~~~----~-~~~~~~~~l~~~p~~--~~~-----~~~~~~~~r~~~~~~~~~~~~~-~~g~~~~v~~~Hl 144 (312)
..+++||++...+ + ....+..+.+..|+. +|+ ..++ ...|++. +.|.....+ ..+..|.|+|+|+
T Consensus 220 ~~GVAIlsR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D-~egR~I~-a~~~~~g~~~~~~~~~~vinvYl 297 (467)
T 2j63_A 220 YSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGD-EEGRVLT-TFLSPDPDSASSSSRIALVNTYV 297 (467)
T ss_dssp SCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCC-TTCCEEE-EEECSSCCC----CCEEEEEEEC
T ss_pred cceEEEEEeCCccccccceeeeeccccccccccccccccccccccccC-CCCcEEE-EEEEeCCcccccCceEEEEEEEC
Confidence 4679999987653 1 222222211211111 000 0111 2356543 666543100 0016899999999
Q ss_pred CCccH-----HHHHHHH-HHHHHHHHhcC-------------------CCCCEEEEecCCCCCCchh-------------
Q 021437 145 DEFTA-----RARRRSA-LLTWQHIASLP-------------------PSLPVIYCGGFNTQKESTT------------- 186 (312)
Q Consensus 145 ~~~~~-----~~r~~~~-~~l~~~l~~~~-------------------~~~pvIv~GDfN~~~~~~~------------- 186 (312)
++.+. ..|.++. +.+.++++++. .+.|+|||||||+.+.+..
T Consensus 298 P~~~~~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~~~~ 377 (467)
T 2j63_A 298 ANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQEC 377 (467)
T ss_dssp CCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTS
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhcccc
Confidence 87532 1222111 33444444331 2579999999998665421
Q ss_pred ----------HHhhhcccccCCccccccchhhhhhhcCCCCCcccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCce
Q 021437 187 ----------GRFLLGRSREHGVVGDMRDAWPNARMRKNVSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHI 256 (312)
Q Consensus 187 ----------~~~l~~~~~~~g~~~~l~d~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri 256 (312)
+..+.. .. .|.|+|+...... ...+||..+..... . ...+.||
T Consensus 378 ~gf~~~er~~~~~lL~---~~----gL~DafR~~~p~~--~~~yTw~s~r~~~~-----------------~-~n~g~RI 430 (467)
T 2j63_A 378 SGFAPEERMSFRETMQ---RT----NSVDIFRQLYPQA--GPVYSFWSQRINGR-----------------P-RNLGWRL 430 (467)
T ss_dssp TTSCHHHHHHHHHHHH---HT----TEEEHHHHHCTTB--CSCCSBCCTTTTTT-----------------T-TTCCBCC
T ss_pred cccCHHHHHHHHHHHh---hC----CCEEehHhhCCCC--CCCccccCCCCCcc-----------------c-CCCCcee
Confidence 111111 11 3889988654321 22367755543210 0 0146899
Q ss_pred eEEEecCCcee--eeeEEeecCCCCCcCCCCCcceEEEEEec
Q 021437 257 DWILFRGRSLI--PGSCEVVNDNIDGYYPSSHYPIFAEFMLP 296 (312)
Q Consensus 257 D~I~~s~~~~~--~~~~~v~~~~~~~~~~SDH~pV~a~~~~~ 296 (312)
||||+++ .+. +.++.|+.. .++|||+||+++|.++
T Consensus 431 DyIlvS~-~l~~~v~~~~I~~~----~~~SDH~PV~~~l~~p 467 (467)
T 2j63_A 431 DYFVVSS-RLASYVVDCFPMPT----VMGSDHCPFQMWMRHP 467 (467)
T ss_dssp EEEEEEG-GGGGGEEEEEECTT----CCSSSBCCEEEEEECC
T ss_pred EEEEEcH-HHHcceeEEEECCC----CCCCCcccEEEEEEcC
Confidence 9999998 454 778887653 3589999999999863
No 19
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.94 E-value=9e-26 Score=194.26 Aligned_cols=224 Identities=10% Similarity=0.100 Sum_probs=127.6
Q ss_pred CccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHHHhcCCCCceEeeecCCCCCCCCceE
Q 021437 2 SVALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGPEDTSDEHC 81 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~~~~~~ 81 (312)
.+.|||+||||+... .+.+.+.+.|++.+||||||||+...+...+.. ..+|.++..... .....++
T Consensus 17 ~~~lri~s~Nv~~~~---------~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~~~~-~~gy~~~~~~~~---~~~~~Gv 83 (245)
T 1wdu_A 17 GPPYRVLQANLQRKK---------LATAELAIEAATRKAAIALIQEPYVGGAKSMKG-FRGVRVFQSTAQ---GDGTVKA 83 (245)
T ss_dssp -CCEEEEEEECTTCH---------HHHHHHHHHHHHHTCSEEEEESCCC------CC-CSSCEEEECCCC---TTCCCCE
T ss_pred CcceeeeeeeccccH---------HHHHHHHHHHhhcCCCEEEEEcccccCCccccC-CCcceEeccccc---cCCCCCe
Confidence 357999999998542 356789999999999999999998764443322 356765543221 1123468
Q ss_pred EEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccH-HHHHHHHHHHH
Q 021437 82 TIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTA-RARRRSALLTW 160 (312)
Q Consensus 82 ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-~~r~~~~~~l~ 160 (312)
||+++++++++... +... .+-..++.++.. ++.+.|+|+|+++... ..+.+ .+.
T Consensus 84 aIl~~~~~~~~~~~--------~~~~---------~~~~~~~~i~~~-----~~~~~v~~vy~p~~~~~~~~~~---~l~ 138 (245)
T 1wdu_A 84 AIAVFDHDLDVIQY--------PQLT---------TNNIVVVGIRTR-----AWEITLVSYYFEPDKPIESYLE---QIK 138 (245)
T ss_dssp EEEECCSSCEEEEC--------TTTC---------CSSEEEEEEECS-----SCEEEEEEEECCTTSCSHHHHH---HHH
T ss_pred EEEEECCCcceEEe--------cccc---------cCCEEEEEEEcC-----CCcEEEEEEEeCCCCCHHHHHH---HHH
Confidence 99998777776421 1111 122244555544 5689999999998542 22222 333
Q ss_pred HHHHhcCCCCCEEEEecCCCCCCchhHHhhhcccccCCccccccchhhhhhh-cCCCCCcccccCCCCCCcchhHHHHHH
Q 021437 161 QHIASLPPSLPVIYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPNARM-RKNVSLIRTYHGFKGNKQGALEFLKLI 239 (312)
Q Consensus 161 ~~l~~~~~~~pvIv~GDfN~~~~~~~~~~l~~~~~~~g~~~~l~d~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~ 239 (312)
+.++.. ...|+|||||||+.+........... + ..|.+....... ..+.+..+||..+.+..
T Consensus 139 ~~~~~~-~~~~~Ii~GDfN~~~~~~~~~~~~~~----~--~~l~~~~~~~~l~~~~~~~~~T~~~~~~~~---------- 201 (245)
T 1wdu_A 139 RVERKM-GPKRLIFGGDANAKSTWWGSKEDDAR----G--DQLMGTLGELGLHILNEGDVPTFDTIRGGK---------- 201 (245)
T ss_dssp HHHHTT-CSSSEEEEEECCCCCGGGTCSSCCHH----H--HHHHHHHHHHTCEECCCSCCCSEEC---------------
T ss_pred HHHHHh-CCCcEEEEeccccCcccCCCCCcCcc----h--HHHHHHHHHCCcEEecCCCCCcEECCCCCC----------
Confidence 344444 35799999999987642110000000 0 001111111110 00112235665543211
Q ss_pred HhhhhccccCCCCCCceeEEEecCCce--eeeeEEeecCCCCCcCCCCCcceEEEEEec
Q 021437 240 FRALCLCWDRQTQDLHIDWILFRGRSL--IPGSCEVVNDNIDGYYPSSHYPIFAEFMLP 296 (312)
Q Consensus 240 ~~~~~~~~~~~~~~~riD~I~~s~~~~--~~~~~~v~~~~~~~~~~SDH~pV~a~~~~~ 296 (312)
..+.||||||+++ .+ ++.++++... ..+|||+||+++|+++
T Consensus 202 -----------~~~~rID~i~~s~-~~~~~v~~~~v~~~----~~~SDH~Pv~~~l~l~ 244 (245)
T 1wdu_A 202 -----------RYQSRVDVTFCTE-DMLDLIDGWRVDED----LVSSDHNGMVFNIRLQ 244 (245)
T ss_dssp -----------CCEECCEEEEECG-GGBTTEEEEEECTT----SSSSSBCCEEEEECCC
T ss_pred -----------CCCCEEEEEEeCh-HHHhhccceEEcCC----CCCCCcccEEEEEEeC
Confidence 1358999999998 45 5778888742 5689999999999865
No 20
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.94 E-value=5.3e-26 Score=196.60 Aligned_cols=223 Identities=18% Similarity=0.143 Sum_probs=135.8
Q ss_pred EEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCccc--HH-HHHhcCCCCceEeeecCCCCCCCCceE
Q 021437 5 LSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQ--LD-YLQQCLPAYDQFGVSRKGPEDTSDEHC 81 (312)
Q Consensus 5 l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~--~~-~l~~~l~~y~~~~~~~~~~~~~~~~~~ 81 (312)
|||+||||+..+ .+.+.|.+.|++.+||||||||+.... +. .... ..+|.++..+.. ...++
T Consensus 2 lrv~t~Nv~g~~---------~~~~~i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~-~~gy~~~~~~~~-----~~~G~ 66 (257)
T 2voa_A 2 LKIATFNVNSIR---------SRLHIVIPWLKENKPDILCMQETKVENRKFPEADFH-RIGYHVVFSGSK-----GRNGV 66 (257)
T ss_dssp EEEEEEECSCGG---------GTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHH-TTTCEEEEEEET-----TEEEE
T ss_pred eEEEEEecCChH---------HHHHHHHHHHhhcCCCEEEEEEeecchhhcCHHHhh-hCCCcEEEcCCC-----CccEE
Confidence 899999997432 345679999999999999999997532 21 1112 357876654321 23568
Q ss_pred EEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccH------HHHHHH
Q 021437 82 TIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTA------RARRRS 155 (312)
Q Consensus 82 ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~------~~r~~~ 155 (312)
+|+++.. +..+.. .+ |.. .++ ..|++ .+.+ + .+.|+|+|+++... ..|.++
T Consensus 67 ailsr~~-~~~~~~---~~---~~~----~~~--~~r~l-~~~~--------~-~~~v~~~h~p~~~~~~~~~~~~r~~~ 123 (257)
T 2voa_A 67 AIASLEE-PEDVSF---GL---DSE----PKD--EDRLI-RAKI--------A-GIDVINTYVPQGFKIDSEKYQYKLQW 123 (257)
T ss_dssp EEEESSC-CEEEEE---SC---SSS----SCC--GGGEE-EEEE--------T-TEEEEEEECCCCSCTTSHHHHHHHHH
T ss_pred EEEEccC-hHHhee---cC---CCC----ccc--cCcEE-EEEE--------C-CEEEEEEEeCCCCCCCcHHHHHHHHH
Confidence 9998753 322211 11 211 011 34643 2343 1 69999999987542 234445
Q ss_pred HHHHHHHHHhc-CCCCCEEEEecCCCCCCch--------------------hHHhhhcccccCCccccccchhhhhhhcC
Q 021437 156 ALLTWQHIASL-PPSLPVIYCGGFNTQKEST--------------------TGRFLLGRSREHGVVGDMRDAWPNARMRK 214 (312)
Q Consensus 156 ~~~l~~~l~~~-~~~~pvIv~GDfN~~~~~~--------------------~~~~l~~~~~~~g~~~~l~d~~~~~~~~~ 214 (312)
++.+.+++++. ..+.|+|||||||+.+.+. .++.+.. . .|.|+|+.....
T Consensus 124 ~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~----~----~l~D~~~~~~p~- 194 (257)
T 2voa_A 124 LERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDARRAYKKILE----L----GFVDVLRKIHPN- 194 (257)
T ss_dssp HHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHHHHHHHHHHT----T----TCEEHHHHHSTT-
T ss_pred HHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHhCCCCCCCHHHHHHHHHHHH----c----CcEeeehhhCCC-
Confidence 66677777764 3467999999999876542 1222332 2 388888765322
Q ss_pred CCCCcccccCC-CCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCCcee--eeeEEeecCCCCCcCCCCCcceEE
Q 021437 215 NVSLIRTYHGF-KGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSLI--PGSCEVVNDNIDGYYPSSHYPIFA 291 (312)
Q Consensus 215 ~~~~~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~--~~~~~v~~~~~~~~~~SDH~pV~a 291 (312)
+..+||..+ ...... ...+.||||||+++ .+. +.++++.........+|||+||++
T Consensus 195 --~~~~T~~~~~~~~~~~------------------~~~~~rID~i~~s~-~~~~~~~~~~v~~~~~~~~~~SDH~pv~~ 253 (257)
T 2voa_A 195 --ERIYTFYDYRVKGAIE------------------RGLGWRGDAILATP-PLAERCVDCYADIKPRLAEKPSDHLPLVA 253 (257)
T ss_dssp --CCCCSBCCTTSTTTTT------------------TTCCBCCEEEEECH-HHHTTEEEEEECCHHHHSSSCCSBCCEEE
T ss_pred --CCCcceeccccCCcee------------------cCceEEEEEEEECH-HHHhhhheeEeehhhccCCCCCCccCEEE
Confidence 224566544 221100 01468999999997 455 777877653212236899999999
Q ss_pred EEEe
Q 021437 292 EFML 295 (312)
Q Consensus 292 ~~~~ 295 (312)
+|++
T Consensus 254 ~l~~ 257 (257)
T 2voa_A 254 VFDV 257 (257)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9864
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.94 E-value=8.3e-26 Score=198.59 Aligned_cols=227 Identities=17% Similarity=0.237 Sum_probs=137.6
Q ss_pred CccEEEEEeecCCCCCCCCCCcHHHHHH-HHHHHHhhcCCcEEEEcCCCccc--HH-HHHhcCCCCce-EeeecCCCCCC
Q 021437 2 SVALSLMTFNLHEDQQEDSPNSWVKRRD-LCISVITSYSPMILCTQQGVKSQ--LD-YLQQCLPAYDQ-FGVSRKGPEDT 76 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~~~~w~~r~~-~i~~~i~~~~pDIi~LQEv~~~~--~~-~l~~~l~~y~~-~~~~~~~~~~~ 76 (312)
+.+|||+||||+... .+.. .|.++|++.+||||||||+.... +. .+.. +.+|.+ +..+.. ...
T Consensus 26 ~~~l~v~t~Ni~~~~---------~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~-~~gy~~~~~~~~~--~~~ 93 (285)
T 2o3h_A 26 PATLKIASWNVDGLR---------AWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQE-LPGLSHQYWSAPS--DKE 93 (285)
T ss_dssp BCCEEEEEEECSSHH---------HHHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGG-CGGGCEEEEECBC----C
T ss_pred ccceEEEEEecccCh---------hhhhhhHHHHHHhcCCCEEEEEEeecchhhccHHHHh-ccCCcEEEEeccc--CCc
Confidence 567999999998432 1122 28899999999999999998652 22 2222 356733 332211 111
Q ss_pred CCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccH-----HH
Q 021437 77 SDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTA-----RA 151 (312)
Q Consensus 77 ~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-----~~ 151 (312)
...+++|+++...+.+... + +.. .+ ....|++ .+. .+.+.|+|+|+++... ..
T Consensus 94 g~~Gvailsr~~~~~~~~~----~---~~~----~~-~~~~r~l-~~~---------~~~~~v~~~h~p~~~~~~~~~~~ 151 (285)
T 2o3h_A 94 GYSGVGLLSRQCPLKVSYG----I---GDE----EH-DQEGRVI-VAE---------FDSFVLVTAYVPNAGRGLVRLEY 151 (285)
T ss_dssp CSCCEEEEESSCCSEEEES----C---SCG----GG-SSBCCEE-EEE---------CSSCEEEEEECCCCCGGGTTHHH
T ss_pred ccceEEEEEccChHHeeec----c---CCc----cc-CCCCcEE-EEE---------eCCEEEEEEEcCCCCCcchhHHH
Confidence 2247999998765554321 1 110 00 1223532 233 2379999999987543 23
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCch--------------------hH-HhhhcccccCCccccccchhhhh
Q 021437 152 RRRSALLTWQHIASLPPSLPVIYCGGFNTQKEST--------------------TG-RFLLGRSREHGVVGDMRDAWPNA 210 (312)
Q Consensus 152 r~~~~~~l~~~l~~~~~~~pvIv~GDfN~~~~~~--------------------~~-~~l~~~~~~~g~~~~l~d~~~~~ 210 (312)
|.++++.+.+.++++....|+|||||||+.+... .+ ..+... .|.|+|+..
T Consensus 152 r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~l~~--------~l~D~~~~~ 223 (285)
T 2o3h_A 152 RQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAV--------PLADSFRHL 223 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHHHT--------TCEEHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhhccChhhcCCCCCcCHHHHHHHHHHHhcC--------CCEEEEEec
Confidence 6677777888887654358999999999854321 12 333321 288888765
Q ss_pred hhcCCCCCcccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCCcee--eeeEEeecCCCCCcCCCCCcc
Q 021437 211 RMRKNVSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSLI--PGSCEVVNDNIDGYYPSSHYP 288 (312)
Q Consensus 211 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~--~~~~~v~~~~~~~~~~SDH~p 288 (312)
.... +...||..+.+.... ...+.||||||+++ .+. +.+++++.. ...|||+|
T Consensus 224 ~~~~--~~~~T~~~~~~~~~~------------------~~~~~rID~i~~s~-~~~~~v~~~~v~~~----~~~SDH~p 278 (285)
T 2o3h_A 224 YPNT--PYAYTFWTYMMNARS------------------KNVGWRLDYFLLSH-SLLPALCDSKIRSK----ALGSDHCP 278 (285)
T ss_dssp CTTC--CSCCSBCCSSTTHHH------------------HTCCBCCEEEEECG-GGGGGEEEEEECTT----CCSSSBCC
T ss_pred CCCC--CCcEeEecCcCCccc------------------cCceeEEEEEEECH-HHHhhhhheEeecc----CCCCCeec
Confidence 3221 213566554332100 01468999999998 455 778888763 24799999
Q ss_pred eEEEEEe
Q 021437 289 IFAEFML 295 (312)
Q Consensus 289 V~a~~~~ 295 (312)
|+++|++
T Consensus 279 v~~~l~l 285 (285)
T 2o3h_A 279 ITLYLAL 285 (285)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999864
No 22
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.94 E-value=1.1e-25 Score=201.29 Aligned_cols=227 Identities=18% Similarity=0.257 Sum_probs=133.7
Q ss_pred CccEEEEEeecCCCCCCCCCCcHHHHHH-HHHHHHhhcCCcEEEEcCCCccc--HH-HHHhcCCCCc-eEeeecCCCCCC
Q 021437 2 SVALSLMTFNLHEDQQEDSPNSWVKRRD-LCISVITSYSPMILCTQQGVKSQ--LD-YLQQCLPAYD-QFGVSRKGPEDT 76 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~~~~w~~r~~-~i~~~i~~~~pDIi~LQEv~~~~--~~-~l~~~l~~y~-~~~~~~~~~~~~ 76 (312)
+.+|||+||||+..+ .+.. .|.++|++.+||||||||+.... +. .+.. +.+|. .+..+.. ...
T Consensus 59 ~~~lrv~t~Nv~g~~---------~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~-~~gy~~~~~~~~~--~~~ 126 (318)
T 1hd7_A 59 PATLKICSWNVDGLR---------AWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQE-LPGLSHQYWSAPS--DKE 126 (318)
T ss_dssp BCCEEEEEEECSSHH---------HHHHTTHHHHHHHHCCSEEEEECCCCCC------------CCCEEEEECC------
T ss_pred CCceEEEEEecCcch---------hhhhhhHHHHHHhhCCCEEEEEEccCchhhccHHHHh-cCCCceEEEecCC--CCC
Confidence 467999999998432 1112 38899999999999999998653 22 1222 35783 3333211 111
Q ss_pred CCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccH-----HH
Q 021437 77 SDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTA-----RA 151 (312)
Q Consensus 77 ~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-----~~ 151 (312)
...+++|+++...+.+... + +.. .+ ....|+ +.+.+ ..|.|+|+|+++... ..
T Consensus 127 g~~Gvailsr~~~~~~~~~----~---~~~----~~-~~~~r~-l~~~~---------~~~~v~~vh~p~~~~~~~~~~~ 184 (318)
T 1hd7_A 127 GYSGVGLLSRQCPLKVSYG----I---GDE----EH-DQEGRV-IVAEF---------DSFVLVTAYVPNAGRGLVRLEY 184 (318)
T ss_dssp -CCCEEEEESSCCSEEEES----C---SCG----GG-SSSSCE-EEEEC---------SSCEEEEEECCCCCGGGTTHHH
T ss_pred ccceEEEEEcCCceeEEec----C---CCc----cc-CCCCcE-EEEEc---------CCEEEEEEEcCCCCCccccHHH
Confidence 2247999998765554321 1 110 00 122353 23333 269999999987543 23
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCch--------------------hH-HhhhcccccCCccccccchhhhh
Q 021437 152 RRRSALLTWQHIASLPPSLPVIYCGGFNTQKEST--------------------TG-RFLLGRSREHGVVGDMRDAWPNA 210 (312)
Q Consensus 152 r~~~~~~l~~~l~~~~~~~pvIv~GDfN~~~~~~--------------------~~-~~l~~~~~~~g~~~~l~d~~~~~ 210 (312)
|.++++.|.++++++....|+|||||||+.+.+. .+ ..+.. . .|.|+|+..
T Consensus 185 r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~ll~----~----~l~D~~r~~ 256 (318)
T 1hd7_A 185 RQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQA----V----PLADSFRHL 256 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHH----T----TCEEHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhhccChhhcCCCCCcCHHHHHHHHHHHhh----C----CCEEeehhh
Confidence 6677777888777653237999999999876431 11 22332 1 278888755
Q ss_pred hhcCCCCCcccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCCcee--eeeEEeecCCCCCcCCCCCcc
Q 021437 211 RMRKNVSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSLI--PGSCEVVNDNIDGYYPSSHYP 288 (312)
Q Consensus 211 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~--~~~~~v~~~~~~~~~~SDH~p 288 (312)
.... +..+||..+...... ...+.||||||+++ .+. +.+++++.. ...|||+|
T Consensus 257 ~p~~--~~~~T~~~~~~~~~~------------------~~~~~rID~il~s~-~~~~~v~~~~v~~~----~~~SDH~P 311 (318)
T 1hd7_A 257 YPNT--PYAYTFWTYMMNARS------------------KNVGWRLDYFLLSH-SLLPALCDSKIRSK----ALGSDHCP 311 (318)
T ss_dssp CTTC--TTCCSBCCSGGGHHH------------------HTCCBCCEEEEECG-GGGGGEEEEEECTT----CCSSSBCC
T ss_pred CCCC--CCCcceECCcCCCcc------------------cCCceEEEEEEECH-HHHhhhhheEeecc----CCCCCccC
Confidence 3221 223566544321100 01468999999998 454 678887753 23699999
Q ss_pred eEEEEEe
Q 021437 289 IFAEFML 295 (312)
Q Consensus 289 V~a~~~~ 295 (312)
|+++|.+
T Consensus 312 v~~~l~l 318 (318)
T 1hd7_A 312 ITLYLAL 318 (318)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999864
No 23
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.93 E-value=7.2e-25 Score=190.72 Aligned_cols=227 Identities=15% Similarity=0.141 Sum_probs=137.4
Q ss_pred cEEEEEeecCCCCCCCCCCcHHHHHH-HHHHHHhhcCCcEEEEcCCCccc--HHHHHhcCCCCceEeeecCCCCCCCCce
Q 021437 4 ALSLMTFNLHEDQQEDSPNSWVKRRD-LCISVITSYSPMILCTQQGVKSQ--LDYLQQCLPAYDQFGVSRKGPEDTSDEH 80 (312)
Q Consensus 4 ~l~v~T~Nv~~~~~~~~~~~w~~r~~-~i~~~i~~~~pDIi~LQEv~~~~--~~~l~~~l~~y~~~~~~~~~~~~~~~~~ 80 (312)
+|||+||||+..+ .+.. .+.+.|++.+||||||||+.... +........+|.++..+.. .....+
T Consensus 3 ~l~i~s~Nv~g~~---------~~~~~~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~~---~~~~~G 70 (265)
T 3g91_A 3 VLKIISWNVNGLR---------AVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAE---RKGYSG 70 (265)
T ss_dssp EEEEEEEECSCHH---------HHHHHTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECBS---STTSCC
T ss_pred ccEEEEEEcCCch---------hhhhhhHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccCC---CCCcCE
Confidence 7999999997432 2222 48899999999999999997543 2222222357876655432 123357
Q ss_pred EEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccHH-----HHHHH
Q 021437 81 CTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTAR-----ARRRS 155 (312)
Q Consensus 81 ~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~-----~r~~~ 155 (312)
++|+++.....+... + +.. . .....|++. +. ...+.|+|+|+++.... .|.+.
T Consensus 71 vail~k~~~~~~~~~----~---~~~----~-~d~~gr~i~-~~---------~~~~~i~~vy~p~~~~~~~~~~~r~~~ 128 (265)
T 3g91_A 71 VAMYTKVPPSSLREG----F---GVE----R-FDTEGRIQI-AD---------FDDFLLYNIYFPNGAMSEERLKYKLEF 128 (265)
T ss_dssp EEEEESSCCSEEECC----C---SCH----H-HHSBSCEEE-EE---------CSSCEEEEEECCCCTTCHHHHHHHHHH
T ss_pred EEEEEecChHHhccC----C---CCc----c-cCCcCCEEE-EE---------eCCEEEEEEEecCCCCCchhHHHHHHH
Confidence 899987654443221 0 000 0 011124432 22 23799999999885432 24455
Q ss_pred HHHHHHHHHhcC-CCCCEEEEecCCCCCCch--------------------hHHhhhcccccCCccccccchhhhhhhcC
Q 021437 156 ALLTWQHIASLP-PSLPVIYCGGFNTQKEST--------------------TGRFLLGRSREHGVVGDMRDAWPNARMRK 214 (312)
Q Consensus 156 ~~~l~~~l~~~~-~~~pvIv~GDfN~~~~~~--------------------~~~~l~~~~~~~g~~~~l~d~~~~~~~~~ 214 (312)
.+.+.+.++++. .+.|+|||||||..+.+. .++.+.. . .+.|+|+.....
T Consensus 129 ~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~----~----gl~D~~r~~~p~- 199 (265)
T 3g91_A 129 YDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIE----N----GYVDTFRMFNSD- 199 (265)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHHHHHHHHHHH----T----TEEETHHHHCCC-
T ss_pred HHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhcCCCCccCHHHHHHHHHHHh----c----CcEEeeHhhCCC-
Confidence 666666666553 257999999999876531 1222222 2 388888765432
Q ss_pred CCCCcccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCCce--eeeeEEeecCCCCCcCCCCCcceEEE
Q 021437 215 NVSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSL--IPGSCEVVNDNIDGYYPSSHYPIFAE 292 (312)
Q Consensus 215 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~--~~~~~~v~~~~~~~~~~SDH~pV~a~ 292 (312)
+..+||......... ...+.||||||+++ .+ ++..+++... ..+|||+||+++
T Consensus 200 --~~~yT~~~~~~~~~~------------------~~~~~rID~il~s~-~~~~~~~~~~i~~~----~~~SDH~Pv~~~ 254 (265)
T 3g91_A 200 --PGQYTWWSYRTRARE------------------RNVGWRLDYFFVNE-EFKGKVKRSWILSD----VMGSDHCPIGLE 254 (265)
T ss_dssp --SCCCSBCCSSTTTTT------------------TTCCBCCEEEEEEG-GGGGGEEEEEECTT----CCSSSBCCEEEE
T ss_pred --CCCCCCcCCCCCccc------------------cCceEEEEEEEECH-HHHhhhcEEEEeCC----CCCCCcceEEEE
Confidence 224565443322110 01467999999998 45 5678887754 247999999999
Q ss_pred EEecCc
Q 021437 293 FMLPRT 298 (312)
Q Consensus 293 ~~~~~~ 298 (312)
|.-+.+
T Consensus 255 ~~~~~~ 260 (265)
T 3g91_A 255 IELLEH 260 (265)
T ss_dssp EECCCC
T ss_pred hhhhhh
Confidence 885443
No 24
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.93 E-value=3.3e-25 Score=191.59 Aligned_cols=224 Identities=12% Similarity=0.159 Sum_probs=136.1
Q ss_pred EEEEEeecCCCCCCCCCCcHHHHHH-HHHHHHhhcCCcEEEEcCCCcccH---HHHHhcCCCCceEeeecCCCCCCCCce
Q 021437 5 LSLMTFNLHEDQQEDSPNSWVKRRD-LCISVITSYSPMILCTQQGVKSQL---DYLQQCLPAYDQFGVSRKGPEDTSDEH 80 (312)
Q Consensus 5 l~v~T~Nv~~~~~~~~~~~w~~r~~-~i~~~i~~~~pDIi~LQEv~~~~~---~~l~~~l~~y~~~~~~~~~~~~~~~~~ 80 (312)
|||+||||+... .+.. .|.+.|++.+||||||||+..... +.+. ...+|.++..... .....+
T Consensus 2 l~v~t~Ni~~~~---------~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~-~~~gy~~~~~~~~---~~~~~G 68 (259)
T 2jc5_A 2 LKIISANVNGIR---------SAYKKGFYEYIAASGADIVCVQELKAQEADLSADMK-NPHGMHGHWHCAE---KRGYSG 68 (259)
T ss_dssp EEEEEEECSSHH---------HHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHH-SGGGCEEEEECCS---STTCCC
T ss_pred cEEEEEeeccHH---------HHHHhHHHHHHHhcCCCEEEEEEecchhhccChhhc-cccCCeEEEeccC---CCCcce
Confidence 899999997431 2223 388999999999999999986532 2222 2357876654321 123357
Q ss_pred EEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccH-HHHH----HH
Q 021437 81 CTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTA-RARR----RS 155 (312)
Q Consensus 81 ~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-~~r~----~~ 155 (312)
++|+++.....+.. . + |.. .. ....|. ..+.+ +.+.|+|+|+++... ..|. ++
T Consensus 69 ~ailsr~~~~~~~~-~---~---~~~----~~-~~~~r~-~~~~~---------~~~~v~~~h~~~~~~~~~r~~~~~~~ 126 (259)
T 2jc5_A 69 VAVYSKRKPDNVQI-G---M---GIE----EF-DREGRF-VRCDF---------GRLSVISLYLPSGSSAEERQQVKYRF 126 (259)
T ss_dssp EEEEESSCCSEEEE-S---C---SCH----HH-HTTCCE-EEEEE---------TTEEEEEEECCCCTTCHHHHHHHHHH
T ss_pred EEEEEecCceeEEe-C---C---CCC----cc-CCCCeE-EEEEc---------CCEEEEEEeccCCCCCcHHHHHHHHH
Confidence 99998865443321 1 1 110 00 011243 23333 269999999988542 2333 45
Q ss_pred HHHHHHHHHhcC-CCCCEEEEecCCCCCCchh--------------------HHhhhcccccCCccccccchhhhhhhcC
Q 021437 156 ALLTWQHIASLP-PSLPVIYCGGFNTQKESTT--------------------GRFLLGRSREHGVVGDMRDAWPNARMRK 214 (312)
Q Consensus 156 ~~~l~~~l~~~~-~~~pvIv~GDfN~~~~~~~--------------------~~~l~~~~~~~g~~~~l~d~~~~~~~~~ 214 (312)
++.+.+.+++.. .+.|+|||||||+.+.+.. +..+.. .. .|.|+|+.....
T Consensus 127 ~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~---~~----~l~d~~~~~~~~- 198 (259)
T 2jc5_A 127 LDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIH---KL----GWTDMWRTLYPD- 198 (259)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCSTTCTTSTTSCHHHHHHHHHHHH---TT----CCEEHHHHHCTT-
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChhhcCCCCCcCHHHHHHHHHHhc---cC----CcEEeeHhhCCC-
Confidence 666767776542 3579999999999765411 222221 12 388888765322
Q ss_pred CCCCcccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCCcee--eeeEEeecCCCCCcCCCCCcceEEE
Q 021437 215 NVSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRSLI--PGSCEVVNDNIDGYYPSSHYPIFAE 292 (312)
Q Consensus 215 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~--~~~~~v~~~~~~~~~~SDH~pV~a~ 292 (312)
+...||..+.+... . ...+.||||||+++ .+. +.+++++.. ..+|||+||+++
T Consensus 199 --~~~~T~~~~~~~~~----------~--------~~~~~rID~i~~s~-~~~~~~~~~~v~~~----~~~SDH~pv~~~ 253 (259)
T 2jc5_A 199 --VPGYTWWSNRGQAY----------A--------KDVGWRIDYQMVTP-ELAAKAVSAHVYKD----EKFSDHAPLVVE 253 (259)
T ss_dssp --CCCCCEESCSSHHH----------H--------TTCEECCEEEEECH-HHHTTEEEEEECCS----SCCSSBCCEEEE
T ss_pred --CCCccEECCcCCCc----------c--------CCCeeEEEEEEECH-HHHhHHhheeecCC----CCCCCcccEEEE
Confidence 23467755432110 0 01347999999997 455 778888753 458999999999
Q ss_pred EEec
Q 021437 293 FMLP 296 (312)
Q Consensus 293 ~~~~ 296 (312)
|++.
T Consensus 254 l~~~ 257 (259)
T 2jc5_A 254 YDYA 257 (259)
T ss_dssp ESCC
T ss_pred Eecc
Confidence 9865
No 25
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.91 E-value=1.8e-24 Score=189.84 Aligned_cols=243 Identities=12% Similarity=0.150 Sum_probs=140.1
Q ss_pred ccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcE--EEEcCCCccc---------HHHHHhcCCCCceEeeecC
Q 021437 3 VALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMI--LCTQQGVKSQ---------LDYLQQCLPAYDQFGVSRK 71 (312)
Q Consensus 3 ~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDI--i~LQEv~~~~---------~~~l~~~l~~y~~~~~~~~ 71 (312)
.+|+|+||||++..+.+...+|. ..+...+||| |||||+.... .+.+.+.|+.|.|+..++.
T Consensus 7 ~~i~V~T~Nv~~~~~~~~l~~wl-------~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~~~~Y~~v~~~ 79 (282)
T 2imq_X 7 LSVHTVSWNSGHERAPTNLEELL-------GLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNT 79 (282)
T ss_dssp EEEEEEEEEEETCCCCSCCHHHH-------TCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cEEEEEEEeCCCCcCchhHHHHh-------cccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcCCCceEEEEec
Confidence 35899999998776544332332 2345689996 5999997542 4666666666666665542
Q ss_pred CCCCCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCc-c-H
Q 021437 72 GPEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEF-T-A 149 (312)
Q Consensus 72 ~~~~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~-~-~ 149 (312)
. ....+..++++++.+.++.++..... ...+ ...++.++++.+... |..|.++|+||++. + .
T Consensus 80 ~-~~~~G~~l~vf~k~~~~~~i~~~~~~-----~~~g-----~~g~kGav~~r~~~~-----~~~~~fvn~HL~~~~~~~ 143 (282)
T 2imq_X 80 I-TETMGLTVYCLEKHLDQNTLKNETII-----VTVD-----DQKKSGGIVTSFTIY-----NKRFSFTTSRMSDEDVTS 143 (282)
T ss_dssp E-CSSEEEEEEEEGGGCCTTTCCCEEEE-----EECS-----TTSCSEEEEEEEEET-----TEEEEEEEEECCTTCCCT
T ss_pred c-CceeEEEEEEEEccccCccceeeeec-----cccc-----cccCCceEEEEEEEC-----CEEEEEEEECCCCCCchH
Confidence 1 11234567777776654433322211 1111 112466777777765 77999999999985 2 3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCc---hhHHhhhcccccCCccccccchhh-----hhhh--------c
Q 021437 150 RARRRSALLTWQHIASLPPSLPVIYCGGFNTQKES---TTGRFLLGRSREHGVVGDMRDAWP-----NARM--------R 213 (312)
Q Consensus 150 ~~r~~~~~~l~~~l~~~~~~~pvIv~GDfN~~~~~---~~~~~l~~~~~~~g~~~~l~d~~~-----~~~~--------~ 213 (312)
..|.++++.|++.++....+.++|+|||||...+. ...+.+... .+.+.+. .... .
T Consensus 144 ~~R~~~~~~I~~~~~~~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~--------~~~~l~~~DqL~~~~~~~~f~~f~e 215 (282)
T 2imq_X 144 TNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQN--------NIDGLMAFDQLKKAKEQKLFDGWTE 215 (282)
T ss_dssp TSSSSSCCGGGCTTSSSSCCSEEEEEEECSCCBCSCHHHHHHHHHTT--------CHHHHHTTBTHHHHHHTTSSTTCBC
T ss_pred HHHHHHHHHHHHhhhccCccceEEEecccccccCCCHHHHHHHHhhc--------cHHHHhhhhHHHHhhcccccccccc
Confidence 45666777777666555456789999999976553 334443321 1222221 0000 0
Q ss_pred CCCCCcccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCceeEEEecCC---ceeeeeEEeecCCCCCcCCCCCcceE
Q 021437 214 KNVSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGR---SLIPGSCEVVNDNIDGYYPSSHYPIF 290 (312)
Q Consensus 214 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~s~~---~~~~~~~~v~~~~~~~~~~SDH~pV~ 290 (312)
......+||....+.. .|+....+..+||||+++. .+++.++..+. ....|||+||.
T Consensus 216 ~~i~f~PTYk~~~~~~----------------~y~~~R~Psw~DrIl~~~~~~~~~~~~~y~~~~----~~~~SDH~PV~ 275 (282)
T 2imq_X 216 PQVTFKPTYKFKPNTD----------------EYDLSATPSWTDRALYKSGTGKTIQPLSYNSLT----NYKQTEHRPVL 275 (282)
T ss_dssp CCCCSCCCBCBCTTSS----------------CBCTTSCCBCCEEEEEECSSSCCEEEEEEEECT----TCCSSSSCCEE
T ss_pred CCcCCCCCccccCCCc----------------cccccCCccccceEEEecCCCCceEeeEecCCC----CCCCCCcCCeE
Confidence 0011123332211110 0111113445799999852 47777887663 35789999999
Q ss_pred EEEEec
Q 021437 291 AEFMLP 296 (312)
Q Consensus 291 a~~~~~ 296 (312)
+.|++.
T Consensus 276 a~f~~~ 281 (282)
T 2imq_X 276 AKFRVT 281 (282)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999864
No 26
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.89 E-value=2.9e-22 Score=171.82 Aligned_cols=217 Identities=12% Similarity=0.053 Sum_probs=113.5
Q ss_pred CccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCcccHHHHHhcCCCCceEeeecCCCCCCCCceE
Q 021437 2 SVALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMILCTQQGVKSQLDYLQQCLPAYDQFGVSRKGPEDTSDEHC 81 (312)
Q Consensus 2 ~~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~~~~~~ 81 (312)
+..|||+||||.... .+...+.+.|++.+||||||||+.. ..+|.+. +. ...++
T Consensus 5 ~~~mki~s~Nvn~~r---------~~~~~l~~~l~~~~~DIl~LQEt~~---------~~gy~~~--~~------~~~gv 58 (240)
T 2ei9_A 5 RPRLRIGQINLGGAE---------DATRELPSIARDLGLDIVLVQEQYS---------MVGFLAQ--CG------AHPKA 58 (240)
T ss_dssp -CEEEEEEEECTTCH---------HHHHTHHHHHHHHTCSEEEEESCCT---------TSSSEEC--CS------SSCSE
T ss_pred cccceEEEEecCccH---------HHHHHHHHHHHHcCCCEEEeecceE---------cCCceEe--cc------CCCCE
Confidence 346999999997542 3556799999999999999999962 1356521 11 24568
Q ss_pred EEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCccH-HHHHHHHHHHH
Q 021437 82 TIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFTA-RARRRSALLTW 160 (312)
Q Consensus 82 ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-~~r~~~~~~l~ 160 (312)
||+.+++..++.... ... . .+. .++.+. +..+.|+|+|+++... ..+.+.+..+.
T Consensus 59 ail~~~~~~~~~~~~--------~~~------~--~~~-~~i~i~-------~~~i~i~svY~P~~~~~~~~~~~l~~l~ 114 (240)
T 2ei9_A 59 GVYIRNRVLPCAVLH--------HLS------S--THI-TVVHIG-------GWDLYMVSAYFQYSDPIDPYLHRLGNIL 114 (240)
T ss_dssp EEEESSTTSCEEECG--------GGC------C--SSE-EEEEET-------TTTEEEEEEECCTTSCSHHHHHHHHHHH
T ss_pred EEEEecCCcceeeec--------ccC------C--CCE-EEEEEe-------eccEEEEEEEcCCCCchhHHHHHHHHHH
Confidence 998876544443210 000 0 111 113332 3469999999988543 22233333332
Q ss_pred HHHHhcCCCCCEEEEecCCCCCCch---hHHh-hhcccc-c-CCccccccchhhhhhhcCCCCCcccccCCCCCCcchhH
Q 021437 161 QHIASLPPSLPVIYCGGFNTQKEST---TGRF-LLGRSR-E-HGVVGDMRDAWPNARMRKNVSLIRTYHGFKGNKQGALE 234 (312)
Q Consensus 161 ~~l~~~~~~~pvIv~GDfN~~~~~~---~~~~-l~~~~~-~-~g~~~~l~d~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 234 (312)
+ ... ..++|||||||+.+... .... ..+..+ . ...+..+.|.++.... ...+..+||..+.
T Consensus 115 ~---~~~-~~~~Ii~GDfN~~~~~w~~~~~~~~~~~~~r~~~~~~l~~~~d~~~l~~~-~~~~~~~T~~s~~-------- 181 (240)
T 2ei9_A 115 D---RLR-GARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGARRLVVH-NADGHLPTFSTAN-------- 181 (240)
T ss_dssp H---HTT-TSCEEEEEECCCCCGGGTCCHHHHSSSCHHHHHHHHHHHHHHHHTTCEEC-CCTTCCCSEEETT--------
T ss_pred H---hcC-CCcEEEEEecccccccccCCCCCCCCcchhhHHHHHHHHHHHHhcCCEec-CCCCCCceEeCCC--------
Confidence 2 222 47999999999876321 0000 000000 0 0000013333321100 0001234443211
Q ss_pred HHHHHHhhhhccccCCCCCCceeEEEecCCceeeeeEEeecCCCCCcCCCCCcceEEEEEecCccccccC
Q 021437 235 FLKLIFRALCLCWDRQTQDLHIDWILFRGRSLIPGSCEVVNDNIDGYYPSSHYPIFAEFMLPRTVRVIEQ 304 (312)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~riD~I~~s~~~~~~~~~~v~~~~~~~~~~SDH~pV~a~~~~~~~~~~~~~ 304 (312)
.+.||||+|+++. +....+.+.. ..+|||+||+++|....+..-.+.
T Consensus 182 -----------------~~~rID~~l~s~~-l~~~~~~i~~-----~~~SDH~Pv~~~l~~~~~~~~~~~ 228 (240)
T 2ei9_A 182 -----------------GESYVDVTLSTRG-VRVSEWRVTN-----ESSSDHRLIVFGVGGGTTGERDED 228 (240)
T ss_dssp -----------------EEECCEEEEECTT-CCEEEEEECS-----CCSSSBCCEEEEEEC---------
T ss_pred -----------------CceEEEEEEecCc-cccCCeEECC-----CCCCCcccEEEEECCCCCCCCCcc
Confidence 2589999999994 5445555542 468999999999987654443333
No 27
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.80 E-value=1.7e-19 Score=151.89 Aligned_cols=157 Identities=13% Similarity=0.062 Sum_probs=97.1
Q ss_pred ccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcC-CcEEEEcCCCccc----------------HHHHHhcC-----
Q 021437 3 VALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYS-PMILCTQQGVKSQ----------------LDYLQQCL----- 60 (312)
Q Consensus 3 ~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~-pDIi~LQEv~~~~----------------~~~l~~~l----- 60 (312)
..+||||||++...... +..|. .-|.++|+..+ +|||+|||+...- +..+...+
T Consensus 14 ~~~kV~TwNiqgs~~~t-eskw~---~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~sr 89 (262)
T 2f1n_A 14 TDFRVATWNLQGASATT-ESKWN---INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSR 89 (262)
T ss_dssp GGCCEEEEEEEECTTSC-HHHHH---THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSS
T ss_pred ceeEEEEEEcCCCCCCC-ccccc---ccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCC
Confidence 46899999999754311 11242 34667899877 9999999986220 01111122
Q ss_pred CCCceEeeecCCCCCCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEE
Q 021437 61 PAYDQFGVSRKGPEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIV 140 (312)
Q Consensus 61 ~~y~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~ 140 (312)
+++.|+...+.+ ......+.||+.+.. .. ..+.|.. +.. . +|.+..+++ | .+.++
T Consensus 90 p~~~yiY~~~~D-~~~~r~nlAIlSr~~---ad--ev~vLp~-~~~--------~-~Rp~lgiri--------~-~~~ff 144 (262)
T 2f1n_A 90 PQQVYIYFSAVD-ALGGRVNLALVSNRR---AD--EVFVLSP-VRQ--------G-GRPLLGIRI--------G-NDAFF 144 (262)
T ss_dssp SCEEEEEEECSC-SSSCSSCEEEEESSC---CS--EEEEECC-SST--------T-CCCEEEEEE--------T-TEEEE
T ss_pred CceEEEEEeecc-CCCCceeeEEEEccc---cc--ceEECCC-CCC--------C-CCceEEEEE--------C-CEEEE
Confidence 125554444431 112233478886532 22 2333322 110 1 577766666 2 48999
Q ss_pred eccCCCccHHHHHHHHHHHHHHHHhcCC----CCCEEEEecCCCCCCchhHH
Q 021437 141 NTNMDEFTARARRRSALLTWQHIASLPP----SLPVIYCGGFNTQKESTTGR 188 (312)
Q Consensus 141 ~~Hl~~~~~~~r~~~~~~l~~~l~~~~~----~~pvIv~GDfN~~~~~~~~~ 188 (312)
++|+.+.+...|.++++.+.+++..... ..|+|+|||||..|.+....
T Consensus 145 ~tHa~a~~g~da~a~v~~I~~~~~~~~~~~~~~~pwii~GDFNr~P~sl~~~ 196 (262)
T 2f1n_A 145 TAHAIAMRNNDAPALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMN 196 (262)
T ss_dssp EEECCSSSSCSHHHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTT
T ss_pred EEEecCCCCccHHHHHHHHHHHHhcCcccccCCCcEEEEecCCCCCcchhhh
Confidence 9999987666678889999998887421 15999999999999886554
No 28
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.79 E-value=3e-18 Score=145.97 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=89.2
Q ss_pred ccEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCcccH-----HHHHh--------c---C-----
Q 021437 3 VALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITS-YSPMILCTQQGVKSQL-----DYLQQ--------C---L----- 60 (312)
Q Consensus 3 ~~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~-~~pDIi~LQEv~~~~~-----~~l~~--------~---l----- 60 (312)
.++||+||||+.....+ ...|. ..+.++|+. .+||||+|||+...-. ..+.+ . |
T Consensus 3 ~~~kv~TwNi~g~~~~~-~~k~~---~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~~~r 78 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVN-ESKWN---INVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSR 78 (261)
T ss_dssp GGSCEEEEECCCCSSSS-HHHHH---HHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSS
T ss_pred cccEEEEEEcCCCCCCC-hhhhh---hHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhhhhhcccccC
Confidence 46899999999643221 11232 258889998 8899999999875211 11100 0 1
Q ss_pred CCCceEeeecCCCCCCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEE
Q 021437 61 PAYDQFGVSRKGPEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIV 140 (312)
Q Consensus 61 ~~y~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~ 140 (312)
+++.|+...+.. ......++||+.|.. +.+ .+.+.. +. + ....|.+..+.+ +. +.|+
T Consensus 79 ~~~~yiy~~~~d-~~~g~~g~AIlSR~~---~~~--v~~l~~-~~---~----~~~~R~~l~i~i--------~g-~~f~ 135 (261)
T 1sr4_B 79 PNMVYIYYSRLD-VGANRVNLAIVSRRQ---ADE--AFIVHS-DS---S----VLQSRPAVGIRI--------GT-DVFF 135 (261)
T ss_dssp CCEEEEEEECCC-TTTSCSCEEEEESSC---CSE--EEEECC-CC---C----SSCCCCEEEEEE--------TT-EEEE
T ss_pred CCceEEEEEeec-CCCCccceEEEEccc---hhc--eEEcCC-CC---C----CCcCcceEEEEE--------CC-eEEE
Confidence 122333333221 111234588887642 222 222221 11 0 123576655543 32 9999
Q ss_pred eccCCCccHHHHHHHHHHHHHHHHhcC--CC---CCEEEEecCCCCCCc
Q 021437 141 NTNMDEFTARARRRSALLTWQHIASLP--PS---LPVIYCGGFNTQKES 184 (312)
Q Consensus 141 ~~Hl~~~~~~~r~~~~~~l~~~l~~~~--~~---~pvIv~GDfN~~~~~ 184 (312)
++|+.+.....+.++++.|.+++.... +. .++|||||||..+.+
T Consensus 136 s~Hl~~~~~~ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p~~ 184 (261)
T 1sr4_B 136 TVHALATGGSDAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN 184 (261)
T ss_dssp EEECCTTTTTTHHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH
T ss_pred EeCCCCCCCchHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCChhH
Confidence 999998764555667777777776540 23 699999999988654
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.78 E-value=1.2e-17 Score=149.55 Aligned_cols=242 Identities=15% Similarity=0.149 Sum_probs=130.2
Q ss_pred cEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHh---hcCCcE--EEEcCCCc-c--------------cHHHHHhcCC--
Q 021437 4 ALSLMTFNLHEDQQEDSPNSWVKRRDLCISVIT---SYSPMI--LCTQQGVK-S--------------QLDYLQQCLP-- 61 (312)
Q Consensus 4 ~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~---~~~pDI--i~LQEv~~-~--------------~~~~l~~~l~-- 61 (312)
.+.|+||||....+.. .|.+.|. ...||| |||||+.. . +.+.+.+.|.
T Consensus 26 ~i~v~TwNv~g~~~~~----------~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~ 95 (347)
T 1i9z_A 26 KIFVASYNLNGCSATT----------KLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGK 95 (347)
T ss_dssp EEEEEEEECTTCCCCS----------CCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeEecCCCCCch----------hHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhc
Confidence 5899999998655421 1445555 368999 89999853 1 1233444442
Q ss_pred ---CCceEeeecCCCCCCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEE
Q 021437 62 ---AYDQFGVSRKGPEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQ 138 (312)
Q Consensus 62 ---~y~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~ 138 (312)
++.|+...... ..+...+++.+.+..+.+.......... ... +..-++-++.+.|... +..|.
T Consensus 96 ~~~~~~Y~~v~s~~---l~g~~L~Vfvr~~~~~~i~~v~~~~v~t-G~~-----g~~gnKGav~vr~~~~-----~~~l~ 161 (347)
T 1i9z_A 96 CTSGPGYVQLRSGQ---LVGTALMIFCKESCLPSIKNVEGTVKKT-GLG-----GVSGNKGAVAIRFDYE-----DTGLC 161 (347)
T ss_dssp CCSSCCEEEEEEEE---ETTEEEEEEEEGGGGGGEEEEEEEEEEC-CCC---------CCEEEEEEEEET-----TEEEE
T ss_pred ccCCCceeEEEEee---ccceEEEEEEehHhhhhccceeeeeEec-cCC-----CccCCCceEEEEEEEC-----CeEEE
Confidence 35565443321 2356788888876443221111100000 100 1112455666777766 66999
Q ss_pred EEeccCCCcc--HHHHHHHHHHHHHHHH-----hcCCCCCEEEEecCCCCCC---chhHHhhhcccccCCccccc--cch
Q 021437 139 IVNTNMDEFT--ARARRRSALLTWQHIA-----SLPPSLPVIYCGGFNTQKE---STTGRFLLGRSREHGVVGDM--RDA 206 (312)
Q Consensus 139 v~~~Hl~~~~--~~~r~~~~~~l~~~l~-----~~~~~~pvIv~GDfN~~~~---~~~~~~l~~~~~~~g~~~~l--~d~ 206 (312)
++|+||.+.. ...|.++...|++.+. .+....++|++||||...+ +...+.+.... +..| .|-
T Consensus 162 fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~-----~~~Ll~~Dq 236 (347)
T 1i9z_A 162 FITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGK-----LSYLFEYDQ 236 (347)
T ss_dssp EEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTC-----HHHHHTTBH
T ss_pred EEEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCccEEEecccccccCCCHHHHHHHHhhcc-----HHHhhcccH
Confidence 9999999853 3468888887877653 1223568999999995433 22333222210 0000 011
Q ss_pred hhhhh---------hcCCCCCcccccCCCCCCcchhHHHHHHHhhhhccccCCCCCCce----eEEEecCCceeeeeEEe
Q 021437 207 WPNAR---------MRKNVSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDRQTQDLHI----DWILFRGRSLIPGSCEV 273 (312)
Q Consensus 207 ~~~~~---------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri----D~I~~s~~~~~~~~~~v 273 (312)
+.... ........+||....+... ++. ....|+ |+||+++ .+++..+..
T Consensus 237 L~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~----------------yd~-s~k~R~PsWcDRIL~~~-~l~~~~Y~~ 298 (347)
T 1i9z_A 237 LNKQMLTGKVFPFFSELPITFPPTYKFDIGTDI----------------YDT-SDKHRVPAWTDRILYRG-ELVPHSYQS 298 (347)
T ss_dssp HHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSC----------------BCC-STTCCCCBCCEEEEEES-SCEEEEEEE
T ss_pred HHHHHhcCCcccccccCCCCCCCCcccCCCCcc----------------ccc-cccccCCcccceEEEeC-CEEEEEEEe
Confidence 11000 0011122334432221110 000 012455 9999998 688888877
Q ss_pred ecCCCCCcCCCCCcceEEEEEecC
Q 021437 274 VNDNIDGYYPSSHYPIFAEFMLPR 297 (312)
Q Consensus 274 ~~~~~~~~~~SDH~pV~a~~~~~~ 297 (312)
+. ...|||+||.+.|++.-
T Consensus 299 ~~-----~~~SDH~PV~a~f~~~v 317 (347)
T 1i9z_A 299 VP-----LYYSDHRPIYATYEANI 317 (347)
T ss_dssp CC-----CCSSSBCCEEEEEEEEE
T ss_pred cC-----ccCCCcCCceeEEEEEE
Confidence 64 45799999999998764
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.67 E-value=4.1e-15 Score=133.51 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=89.7
Q ss_pred cEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhhcCCcE--EEEcCCCcc---cHHHHHhcC-CCCceEeeecCCCCCCC
Q 021437 4 ALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITSYSPMI--LCTQQGVKS---QLDYLQQCL-PAYDQFGVSRKGPEDTS 77 (312)
Q Consensus 4 ~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~~~pDI--i~LQEv~~~---~~~~l~~~l-~~y~~~~~~~~~~~~~~ 77 (312)
++.|+||||.......... .+++........||| |+|||+... +.+.|.+.| ..|..+.... ..
T Consensus 27 ~i~v~TwNv~g~~~~~~~L-----~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s~~-----l~ 96 (357)
T 2xsw_A 27 ALFVATWNMQGQKELPPSL-----DEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSAA-----HG 96 (357)
T ss_dssp EEEEEEEECTTCSSCCSCC-----HHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEEEE-----ET
T ss_pred eEEEEEEecCCCCCCcccH-----HHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhhhh-----hh
Confidence 5889999998643222111 012222233467996 899999864 234555566 3444443322 23
Q ss_pred CceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccCCCcc--HHHHHHH
Q 021437 78 DEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNMDEFT--ARARRRS 155 (312)
Q Consensus 78 ~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~--~~~r~~~ 155 (312)
+.+.+++.+.+..+.+......... .|-. +..-++-++.+.|... +..|.++|+||.+.. ...|.++
T Consensus 97 g~~l~Vfvr~~~~~~i~~v~~~~v~----tG~~--g~~gNKGav~vr~~~~-----~t~~~Fvn~HLaa~~~~~~~Rn~d 165 (357)
T 2xsw_A 97 VLYMSLFIRRDLIWFCSEVECSTVT----TRIV--SQIKTKGALGISFTFF-----GTSFLFITSHFTSGDGKVAERLLD 165 (357)
T ss_dssp TEEEEEEEEGGGGGGBBCCEEEEEE----EEEE--ETTEEEEEEEEEEEET-----TEEEEEEEEECCCSTTCHHHHHHH
T ss_pred hEEEEEEEchHHhhcCceeEecccc----cccc--cccccccEEEEEEEEC-----CeEEEEEEEccCCCCchHHHHHHH
Confidence 5667888876543221111100000 0000 0011244455666665 669999999999853 3567778
Q ss_pred HHHHHHHHHhc-----------------CCCCCEEEEecCCCCCCc
Q 021437 156 ALLTWQHIASL-----------------PPSLPVIYCGGFNTQKES 184 (312)
Q Consensus 156 ~~~l~~~l~~~-----------------~~~~pvIv~GDfN~~~~~ 184 (312)
...|++.+.-. ....++|++||||...+.
T Consensus 166 ~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 166 YTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp HHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred HHHHHHHhcccccccccccccccccccccccceEEEecccCccccc
Confidence 88887766310 123689999999987654
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.57 E-value=4.5e-13 Score=117.27 Aligned_cols=247 Identities=14% Similarity=0.108 Sum_probs=126.2
Q ss_pred cEEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhh--cCCc--EEEEcCCCcc--------------cHHHHHhcCC-CCc
Q 021437 4 ALSLMTFNLHEDQQEDSPNSWVKRRDLCISVITS--YSPM--ILCTQQGVKS--------------QLDYLQQCLP-AYD 64 (312)
Q Consensus 4 ~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~~i~~--~~pD--Ii~LQEv~~~--------------~~~~l~~~l~-~y~ 64 (312)
.+.|+||||....+... +.+.|.. ..|| +|||||+... +.+.+.+.|. +-.
T Consensus 9 ~i~v~TwNvng~~~~~~----------l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~ 78 (313)
T 3mtc_A 9 RFFAGTYNVNGQSPKEC----------LRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAK 78 (313)
T ss_dssp EEEEEEEECTTCCCCSC----------THHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSC
T ss_pred EEEEEEEEcCCccCchh----------HHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCC
Confidence 46789999987655321 2334443 6799 7999998531 1233455663 223
Q ss_pred eEeeecCCCCCCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccC
Q 021437 65 QFGVSRKGPEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNM 144 (312)
Q Consensus 65 ~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl 144 (312)
|+.+... ...+....++.+++..+.+......... .... +..-++-++.+.|... +..|.++|+||
T Consensus 79 Y~~v~s~---~lvGl~l~Vfvr~~~~~~i~~v~~~~v~-tG~~-----g~~GNKGaV~ir~~~~-----~ts~cFVnsHL 144 (313)
T 3mtc_A 79 YAKVKLI---RLVGIMLLLYVKQEHAAYISEVEAETVG-TGIM-----GRMGNKGGVAIRFQFH-----NTSICVVNSHL 144 (313)
T ss_dssp EEEEEEE---EETTEEEEEEEEGGGGGGEEEEEEEEEE-CSGG-----GTSTTSEEEEEEEEET-----TEEEEEEEEEC
T ss_pred EEEEEEe---chhhhhhhhhhhhhhhhhcceeEeeeec-cccc-----ccccCCceEEEEEEEC-----CcEEEEEeecc
Confidence 4433321 1235666777776533322211111100 0100 1112345555677666 56999999999
Q ss_pred CCcc--HHHHHHHHHHHHHHHHh-----------cCCCCCEEEEecCCCCCCc---hhHHhhhcccccCCccccc--cch
Q 021437 145 DEFT--ARARRRSALLTWQHIAS-----------LPPSLPVIYCGGFNTQKES---TTGRFLLGRSREHGVVGDM--RDA 206 (312)
Q Consensus 145 ~~~~--~~~r~~~~~~l~~~l~~-----------~~~~~pvIv~GDfN~~~~~---~~~~~l~~~~~~~g~~~~l--~d~ 206 (312)
.+.. ...|.+....|++.+.- +.....+|++||||-.-+. .....+.... -+..| .|-
T Consensus 145 aA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~----~~~~Ll~~DQ 220 (313)
T 3mtc_A 145 AAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEK----DFQMLYAYDQ 220 (313)
T ss_dssp CCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTT----CHHHHHTTBH
T ss_pred CCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcC----CHHHHHHhHH
Confidence 9853 34666677777766531 1123459999999976542 1222221110 00000 011
Q ss_pred hhhhhh---------cCCCCCcccccCCCCCCcchhHHHHHHHhhhhccccC---CCCCCceeEEEecCCceeeeeEEee
Q 021437 207 WPNARM---------RKNVSLIRTYHGFKGNKQGALEFLKLIFRALCLCWDR---QTQDLHIDWILFRGRSLIPGSCEVV 274 (312)
Q Consensus 207 ~~~~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~riD~I~~s~~~~~~~~~~v~ 274 (312)
...... .+.....+||..-.+.. .|+. ...+..=|+||+++..++...+.-.
T Consensus 221 L~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~----------------~ydts~k~R~PsWcDRIL~~~~~i~~~~Y~s~ 284 (313)
T 3mtc_A 221 LKIQVAAKTVFEGFTEGELTFQPTYKYDTGSD----------------DWDTSEKCRAPAWCDRILWKGKNITQLSYQSH 284 (313)
T ss_dssp HHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSS----------------SBCCSTTCCCCBCCEEEEEEESSEEEEEEEEC
T ss_pred HHHHHHcCCccCCcccCCcCcCCCccCcCCCc----------------ccccccCEecccccceEEEecCCeEEEeeeec
Confidence 111000 00011123332211110 0111 1245668999998755666666543
Q ss_pred cCCCCCcCCCCCcceEEEEEecCc
Q 021437 275 NDNIDGYYPSSHYPIFAEFMLPRT 298 (312)
Q Consensus 275 ~~~~~~~~~SDH~pV~a~~~~~~~ 298 (312)
. ....|||.||.|.|++...
T Consensus 285 ~----~~~~SDHrPV~a~f~~~~~ 304 (313)
T 3mtc_A 285 M----ALKTSDHKPVSSVFDIGVR 304 (313)
T ss_dssp T----TCCSSSSCCEEEEEEEEEE
T ss_pred c----CccCCCccCeEEEEEEEEE
Confidence 2 2467999999999997643
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=99.39 E-value=2.6e-11 Score=106.37 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=84.0
Q ss_pred cEEEEEeecCCCCCCCCCCcHHHHHHHHHH---------HHhhcCCcEE--EEcCCCccc---HHHHHhcCC-----CCc
Q 021437 4 ALSLMTFNLHEDQQEDSPNSWVKRRDLCIS---------VITSYSPMIL--CTQQGVKSQ---LDYLQQCLP-----AYD 64 (312)
Q Consensus 4 ~l~v~T~Nv~~~~~~~~~~~w~~r~~~i~~---------~i~~~~pDIi--~LQEv~~~~---~~~l~~~l~-----~y~ 64 (312)
.+-|.||||....++..-.+| |.. .-....|||+ ||||+.... .+.+.+.|. .|.
T Consensus 9 ~i~vgTwNv~g~~p~~~L~~w------l~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~ 82 (316)
T 4a9c_A 9 SVFIGTWNMGSVPPPKNVTSW------FTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYR 82 (316)
T ss_dssp EEEEEEEECTTSCCCSCCHHH------HTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEEEeEcCCcCCCcchhHh------hcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEE
Confidence 377899999865554322122 111 0112457976 999996542 244444442 455
Q ss_pred eEeeecCCCCCCCCceEEEEEeCCCcEEEeeeeEeccCCCCCCCCcccCccCCceEEEEEeeeccCCCCCcEEEEEeccC
Q 021437 65 QFGVSRKGPEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSKAWGAEVPCIATWATFQLKGVEPPGFSFQIVNTNM 144 (312)
Q Consensus 65 ~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~v~~~Hl 144 (312)
.+...+ ..+...++|.+++..+.+......... .... +..-+.-++.+.|... +..|.++|+||
T Consensus 83 ~v~s~~-----L~gi~l~Vfvk~~~~~~I~~v~~~~v~-tG~~-----g~~GNKGaV~ir~~~~-----~ts~~FVn~HL 146 (316)
T 4a9c_A 83 PIAMQS-----LWNIKVAVLVKPEHENRISHVSTSSVK-TGIA-----NTLGNKGAVGVSFMFN-----GTSFGFVNCHL 146 (316)
T ss_dssp EEEEEE-----ETTEEEEEEECGGGGGGEEEEEEEEEE-EC-----------CEEEEEEEEEET-----TEEEEEEEEEC
T ss_pred EEEeee-----ehheeeeeEEeHHHhhhCcccccceee-eeee-----EecCCCceEEEEEEEC-----CcEEEEEEecc
Confidence 444332 235678888876543322211110000 0100 1112344555666665 66999999999
Q ss_pred CCc--cHHHHHHHHHHHHHHHHh----cC------CCCCEEEEecCCCCC
Q 021437 145 DEF--TARARRRSALLTWQHIAS----LP------PSLPVIYCGGFNTQK 182 (312)
Q Consensus 145 ~~~--~~~~r~~~~~~l~~~l~~----~~------~~~pvIv~GDfN~~~ 182 (312)
.+. ....|.+....|++.+.- .. ....+|++||||-.-
T Consensus 147 aAg~~~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi 196 (316)
T 4a9c_A 147 TSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRL 196 (316)
T ss_dssp CCSTTCHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCB
T ss_pred ccCchHHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCc
Confidence 884 335676777777665421 10 123589999999754
Done!