BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021438
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2
SV=1
Length = 313
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 238/310 (76%), Positives = 274/310 (88%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP GG E LS SLG+ Q R S+PDR LIQAFK+I+ MSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E G +VEMGTIHA D++RRFCSNL M NQAVKAAQEAVQKSE+
Sbjct: 181 KKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEE 240
Query: 241 LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDW 300
DIRRSPIS+AAAVIYIITQLS+D KPLK+IS+ T VAEGTI+N YKDL+PH+++IIP+W
Sbjct: 241 FDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNW 300
Query: 301 FANEEDIKNL 310
+A EED+KNL
Sbjct: 301 YAKEEDLKNL 310
>sp|Q8W0W3|TF2B_ORYSJ Transcription initiation factor IIB OS=Oryza sativa subsp. japonica
GN=TFIIB PE=1 SV=1
Length = 312
Score = 504 bits (1299), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/310 (76%), Positives = 275/310 (88%), Gaps = 1/310 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANESSD+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G E LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+LRRFCS LGM NQAVKAAQEAVQ+SE+
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEE 239
Query: 241 LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDW 300
LDIRRSPIS+AAAVIY+ITQLS+D KPLK+IS+ T VAEGTI+N YKDL+P+ +R+IP+
Sbjct: 240 LDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNT 299
Query: 301 FANEEDIKNL 310
+A EED+KNL
Sbjct: 300 YAKEEDLKNL 309
>sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2 OS=Arabidopsis thaliana
GN=TFIIB2 PE=2 SV=1
Length = 312
Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust.
Identities = 234/311 (75%), Positives = 275/311 (88%), Gaps = 1/311 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGL+TVI+KP G S + LS SLG+ Q R S+PDR LI AFK+I+ M+DRL
Sbjct: 61 GPTNPLLADGGLTTVISKPN-GSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAKE+IVK L E GQ VEMGTIHA D++RRFCSNLGMTNQ VKAAQE+VQKSE+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEE 239
Query: 241 LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDW 300
DIRRSPIS+AAAVIYIITQLS++ KPL++IS+ T VAEGTI+N YKDL+PHL++IIP W
Sbjct: 240 FDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAW 299
Query: 301 FANEEDIKNLK 311
+A EED+KNL+
Sbjct: 300 YAKEEDLKNLQ 310
>sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1 OS=Arabidopsis thaliana
GN=TFIIB1 PE=1 SV=1
Length = 312
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/310 (71%), Positives = 264/310 (85%), Gaps = 1/310 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D+YC DCK+ TE+V DHSAGDT+CSECGLVLE++S+DETSEWR FANESS+ DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ L+TVIAKP G S + LS SLG+ Q R+S+ DR LIQAFK+I+ MS+RL
Sbjct: 61 GPTNPLLADSALTTVIAKPN-GSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANE+YK++EDQK RGRNQ+A+ AACLYIACRQE+KPRT+KE C +ANG T
Sbjct: 120 GLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEIGRAK++IVK L E GQSV++GTIHA D++RRFCSNL M+N AVKAAQEAVQKSE+
Sbjct: 180 KKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEE 239
Query: 241 LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDW 300
DIRRSPIS+AA VIYIITQLS+D K LK+IS T VAEGTI+N YKDL+PHL++I P W
Sbjct: 240 FDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSW 299
Query: 301 FANEEDIKNL 310
+A EED+KNL
Sbjct: 300 YAKEEDLKNL 309
>sp|P29052|TF2B_DROME Transcription initiation factor IIB OS=Drosophila melanogaster
GN=TfIIB PE=2 SV=1
Length = 315
Score = 254 bits (650), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 139/300 (46%), Positives = 189/300 (63%), Gaps = 9/300 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI--RRSPISV 250
K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI RSPISV
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISV 252
Query: 251 AAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFANEEDIKNL 310
AAA IY+ +Q S + KEI + VA+ TI+ YK ++PH A++ P+ F I L
Sbjct: 253 AAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFTTPIDQL 312
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/298 (44%), Positives = 182/298 (61%), Gaps = 9/298 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ MSDR+ L I DR N ++
Sbjct: 83 MIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRNIIDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI--RRSPISVAA 252
LE + I D++ RFCSNLG+T Q AA +K+ +LD+ RSPISVAA
Sbjct: 202 LE------TNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPISVAA 255
Query: 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFANEEDIKNL 310
A IY+ +Q S + + KEI + VA+ TI+ Y+ ++P + P F + + L
Sbjct: 256 AAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVDKL 313
>sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b
PE=2 SV=1
Length = 316
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 180/298 (60%), Gaps = 9/298 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI--RRSPISVAA 252
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+ RSPISVAA
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAA 255
Query: 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFANEEDIKNL 310
A IY+ +Q S + + KEI + VA+ TI+ Y+ ++P + P F + + L
Sbjct: 256 AAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDKL 313
>sp|P62915|TF2B_MOUSE Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1
SV=1
Length = 316
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 180/298 (60%), Gaps = 9/298 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI--RRSPISVAA 252
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+ RSPISVAA
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAA 255
Query: 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFANEEDIKNL 310
A IY+ +Q S + + KEI + VA+ TI+ Y+ ++P + P F + + L
Sbjct: 256 AAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDKL 313
>sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2
SV=1
Length = 316
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 180/298 (60%), Gaps = 9/298 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI--RRSPISVAA 252
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+ RSPISVAA
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAA 255
Query: 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFANEEDIKNL 310
A IY+ +Q S + + KEI + VA+ TI+ Y+ ++P + P F + + L
Sbjct: 256 AAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKL 313
>sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B
PE=2 SV=1
Length = 316
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 180/298 (60%), Gaps = 9/298 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI--RRSPISVAA 252
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+ RSPISVAA
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAA 255
Query: 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFANEEDIKNL 310
A IY+ +Q S + + KEI + VA+ TI+ Y+ ++P + P F + + L
Sbjct: 256 AAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKL 313
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1
SV=1
Length = 316
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 180/298 (60%), Gaps = 9/298 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI--RRSPISVAA 252
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+ RSPISVAA
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAA 255
Query: 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFANEEDIKNL 310
A IY+ +Q S + + KEI + VA+ TI+ Y+ ++P + P F + + L
Sbjct: 256 AAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKL 313
>sp|Q2KIN8|TF2B_BOVIN Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2
SV=1
Length = 316
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 179/298 (60%), Gaps = 9/298 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI--RRSPISVAA 252
LE SV++ I D++ RFCSNL + Q AA +K+ +LD+ RSPISVA
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAE 255
Query: 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFANEEDIKNL 310
A IY+ +Q S + + KEI + VA+ TI+ Y+ ++P + P F + + L
Sbjct: 256 AAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKL 313
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB OS=Caenorhabditis elegans
GN=ttb-1 PE=3 SV=2
Length = 306
Score = 224 bits (571), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 173/291 (59%), Gaps = 13/291 (4%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LS
Sbjct: 14 HLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLS 73
Query: 74 TVIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
T IA G ++ SL Q +S ++ DR + A I MS+R+ L I+D A+
Sbjct: 74 TTIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASR 130
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
I+K V + K LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + IV
Sbjct: 131 IFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIV 189
Query: 193 KHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI--RRSPISV 250
+ LE + Q I ++D++ RFC NL + N AA + + D+D+ R+PIS+
Sbjct: 190 RSLETNLEQ------ITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDLVAGRTPISI 243
Query: 251 AAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWF 301
AAA IY+ +Q S + + KEI V AE T++ YK L+P + P F
Sbjct: 244 AAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALELFPKDF 294
>sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dictyostelium discoideum
GN=gtf2b PE=3 SV=1
Length = 325
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 188/300 (62%), Gaps = 17/300 (5%)
Query: 5 YCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGP 62
+C C+ + +++ D++ GD IC CG+V+ VDE SEWR F+N ES+ DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
+NPLL LST + K GS + SG+L +LQ +S+ DRNL+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGK----GSKD--SGTLTRLQNKSALGTGDRNLLAAFKEIGRMADHM 135
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L T++DRANE+++ ++D+K +GR+ + +VAA LYIACRQE+ RT KE ++ N
Sbjct: 136 NLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VP 194
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
KKEI R K ++ + + TI + D+ RFCS L + N K A+ + + D
Sbjct: 195 KKEISRC----YKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMD 250
Query: 241 LDI--RRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298
+ I +SPISV AA IY+++QLS + + K+I+ V+ V+E TI+N YKDL+ ++IP
Sbjct: 251 MGIVAGKSPISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDLYAKRDQLIP 310
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB
PE=3 SV=1
Length = 293
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 178/303 (58%), Gaps = 37/303 (12%)
Query: 13 TEVVFDHSAGDTICSECGLVL-EAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGG 71
+ ++ D+ AGD ICSECGLV+ +A+ GGP NPLLSGG
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDAF-----------------------GGPENPLLSGGH 56
Query: 72 LSTVIAKPTAGGSTELLSGS--LGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDR 129
LST+I T S + + RSS DR+LI AFK IS+M+DR+ L TI DR
Sbjct: 57 LSTIIGPGTGSASFDAFGAPKYPNRRTMRSS--DRSLISAFKEISSMADRINLPKTIVDR 114
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189
AN ++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR +
Sbjct: 115 ANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFK 173
Query: 190 FIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI--RRSP 247
+K LE SV++ I +D++ RFC+NL + N +AA +K+ ++DI RSP
Sbjct: 174 LTLKALET----SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSP 227
Query: 248 ISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFANEEDI 307
ISVAAA IY+ +Q S + KEI + VA+ TI+ YK ++PH A++ P+ F I
Sbjct: 228 ISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFTTPI 287
Query: 308 KNL 310
L
Sbjct: 288 DQL 290
>sp|Q8SRP3|TF2B_ENCCU Transcription initiation factor IIB OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU06_1100i PE=3 SV=1
Length = 312
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 174/310 (56%), Gaps = 19/310 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C+DC +V D+ G +C CG ++ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + S L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTMIS--TGGG---MNSYVLSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDI 243
IGR + I HLE M T+ + + RFCS+L + + K A E + + +L
Sbjct: 187 IGRCFKLISPHLE-------RMATMSTENIIARFCSDLNLNIKIQKIATEIAKAAHELGC 239
Query: 244 R--RSPISVAAAVIYIITQLSNDTKPL-KEISIVTRVAEGTIKNVYKDLFPHLARIIPDW 300
+SP S+AAAVIY++T L + K + K+I VT V E TIKN YK+L IIP+
Sbjct: 240 LAGKSPDSIAAAVIYMVTNLFPEEKKIQKDIQFVTNVTEVTIKNTYKELLTFKYDIIPEN 299
Query: 301 FANEEDIKNL 310
N+E I L
Sbjct: 300 MVNKESIDKL 309
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sua7 PE=3 SV=1
Length = 340
Score = 194 bits (493), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 177/317 (55%), Gaps = 25/317 (7%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C++C+ +V + S+GDT+C CGLVL +D SEWR F+N + + DP RVG
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVA 79
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T I+ G+ L K Q RS ++NL+ A+K I AM D +
Sbjct: 80 NPLLNGSQLDTTISSYDGAGAM------LAKAQGRSVQVRGEKNLLTAYKEIGAMCDAIS 133
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L I D A ++YK+V+D K L+G++ ++I+AAC+YIACRQ PRT E C++ N K
Sbjct: 134 LPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPK 192
Query: 182 KEIGRAKEFIVKHL----------EAEMG-QSVEMGTIHASDYLRRFCSNLGMTNQAVKA 230
KEIGR + + + L +A G + ++ + A D + RFC+ L + A
Sbjct: 193 KEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRLMLPMSVQSA 252
Query: 231 AQEAVQKS--EDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKD 288
A E +++ + RSPIS+AA+ IY+I+ L K KEIS VT V++ TI+ YK
Sbjct: 253 AAELARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEVTGVSDSTIRIAYKL 312
Query: 289 LFPHLARII-PDWFANE 304
L +I P W AN+
Sbjct: 313 LHAERKELIDPKWIANK 329
>sp|Q05959|TF2B_KLULA Transcription initiation factor IIB OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SUA7 PE=3 SV=1
Length = 357
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 168/308 (54%), Gaps = 21/308 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G L+T I + A GS ++ L + Q++S D L A+ I+ M D
Sbjct: 88 NPLLDGNHLTTRIGQ--AQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ R+ KE S+ N K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRK 204
Query: 182 KEIGRAKEF-IVKHLEAEMG---------QSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
KEIG K F I+K++ E ++ G A ++ RFCS+LG++ Q AA
Sbjct: 205 KEIG--KTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAA 262
Query: 232 QEAVQKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDL 289
+ + S+D+++ RSPI++AAA IY+ T L IS +V EGT+K YK L
Sbjct: 263 EYIAKHSKDVNVLAGRSPITIAAAAIYMATLLFKLNISPTRISQTLQVTEGTVKGGYKAL 322
Query: 290 FPHLARII 297
+ H +++
Sbjct: 323 YEHKEKVV 330
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 162/301 (53%), Gaps = 21/301 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC +CGLV+E +D EWR F +E D RVG P+
Sbjct: 30 CPECGS-PRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K ++ +RGR+ E +VAA LY ACRQ PRT+ E +
Sbjct: 148 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 207
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR FI + L +++ +DY+ RFC+ LG++ + K A E +
Sbjct: 208 SR-VDRKEIGRTYRFITREL------GLKLMPTSPADYIPRFCAALGLSGEVQKKAIEII 260
Query: 236 QKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHL 293
+K+E+ ++ R P VAAA +Y+ + L + + +E++ V V E TI+N YK+L L
Sbjct: 261 KKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRNRYKELAEKL 320
Query: 294 A 294
Sbjct: 321 G 321
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 160/302 (52%), Gaps = 21/302 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C TE++ D+ + +C+ CGLV++ VD EWR F +E D RVG P+
Sbjct: 12 TVCPECGS-TELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPI 69
Query: 64 NPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSI 113
+ GLST+I K G + + L K Q + S +RNL A +
Sbjct: 70 TYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSEL 129
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
S RLGL ++++ A+ +Y+ D K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 130 DRDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIA 189
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ TKKE+GR F+ + L ++++ DY+ RF S LG++ +A A E
Sbjct: 190 EVSR-VTKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEAQSRAIE 242
Query: 234 AVQKS--EDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFP 291
++K+ + L R P VAAA +YI + L + K ++++ + V E TI+N YK+L
Sbjct: 243 IIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 302
Query: 292 HL 293
L
Sbjct: 303 QL 304
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 156/300 (52%), Gaps = 21/300 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T ++ D+ G+ +C ECG V+E +D+ EWR F +E ++ R G P+
Sbjct: 16 CPECGS-TNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +K+ A IY+K Q +RGR+ E +VA LY ACR N PRT+ E SV
Sbjct: 134 MASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
KKEIGR + ++L+ + S A DY+ RFCS L ++ A E +
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRFCSKLKLSMDTRNKALEIL 246
Query: 236 QKSED--LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHL 293
+ +E+ L + P VAAA IYI + ++ + + + ++ V V E TI+N YK+L L
Sbjct: 247 RSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVTEVTIRNRYKELTEKL 306
>sp|P29055|TF2B_YEAST Transcription initiation factor IIB OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SUA7 PE=1 SV=1
Length = 345
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 162/314 (51%), Gaps = 22/314 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGRAKEFIVKHL--EAEMG----QSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
T KE G+ + L ++E G + M Y+ RFCS+LG+ Q +A+
Sbjct: 199 KT-KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257
Query: 233 EAVQKSEDLD--IRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLF 290
+K +++ +SPI++A IY+ L ++ +V EGTIK+ YK L+
Sbjct: 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILY 317
Query: 291 PHLARII-PDWFAN 303
H +++ P AN
Sbjct: 318 EHRDKLVDPQLIAN 331
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 155/297 (52%), Gaps = 20/297 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE--DL 241
+ R +++ L+ V + DY+ R + LG++ + +K A E + K++ L
Sbjct: 197 VARCYRLLLRELD------VSVPVSDPKDYVTRIANLLGLSGRVMKTAAEIIDKAKGSGL 250
Query: 242 DIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298
+ P +AAA IYI + L ++ + KEI+ V V E T++N YK+L L IP
Sbjct: 251 TAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKELTQELKISIP 307
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 157/300 (52%), Gaps = 21/300 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T ++ D+ G+ +C ECG V+E +D+ EWR F +E ++ R G P+
Sbjct: 16 CPECGS-TNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +++ A IY+K Q +RGR+ E +VA LY ACR N PRT+ E SV
Sbjct: 134 MAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
KKEIGR + ++L+ + S A DY+ RFCS L ++ A E +
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRFCSKLKLSMDTRNKALEIL 246
Query: 236 QKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHL 293
+ +E++ + + P VAAA IYI + ++ + + + ++ V V E TI+N YK+L L
Sbjct: 247 RDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVTEVTIRNRYKELTEKL 306
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 154/297 (51%), Gaps = 20/297 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE--DL 241
+ R +++ L+ V + DY+ R + LG++ +K A E + K++ L
Sbjct: 197 VARCYRLLLRELD------VSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAKGSGL 250
Query: 242 DIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298
+ P +AAA IYI + L ++ + KEI+ V V E T++N YK+L L IP
Sbjct: 251 TAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKELTQELKISIP 307
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 154/295 (52%), Gaps = 18/295 (6%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D S G+ +C CG V+E VDE EWR F + RVG P + LL GL
Sbjct: 13 TEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF-DPGQREKRARVGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ EA++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSR-VDKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMT----NQAVKAAQEAVQKSEDLDI 243
FI +HL + + +DY+ +F LG++ +A++ +EA Q+ L
Sbjct: 190 FRFIARHLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEAYQRG--LTS 243
Query: 244 RRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298
+SP + AA +YI + + + + +E++ V RV E T++N YK+L L +P
Sbjct: 244 GKSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKELVEKLNLKVP 298
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 154/303 (50%), Gaps = 21/303 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C T+++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 12 ETKCPECGS-TKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAP 69
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 70 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 129
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ PRT+ E
Sbjct: 130 LDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEI 189
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ +KKE+GR F+ + L + + DY+ RF S L ++ A
Sbjct: 190 ADVSR-VSKKEVGRTYRFLTRELH------IRLPPTSPIDYVPRFASELNLSGVVQSKAI 242
Query: 233 EAVQKSED--LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLF 290
E + ++ D L R P VAAA +YI + L + K ++++ + V E TI+N YK+L
Sbjct: 243 EIINQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELT 302
Query: 291 PHL 293
L
Sbjct: 303 EQL 305
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=tfb
PE=3 SV=1
Length = 307
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 148/291 (50%), Gaps = 15/291 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C E+VFD G+ +C+ CGLV E +D EWR F N R G P+
Sbjct: 15 CPACGS-AEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRTGEPVKL 72
Query: 66 LLSGGGLSTVIAKPT--AGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
L G+ST+I + +GG + AR S +RN QAF + ++ +L
Sbjct: 73 RLPDKGISTIIDRELRDSGGKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKL 132
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L ++++ A IY+K + +RGR E+++ A ++ AC++ PRT +E +
Sbjct: 133 QLPESVRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSD 192
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED 240
+ EI RA + + L +++ SD+L RF S LG++ AQE ++K+++
Sbjct: 193 ENEILRAYRVLQRRL------NLKQKPTEPSDHLPRFASKLGVSENVQAKAQEIIEKAKE 246
Query: 241 --LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDL 289
+ + + P VAAA +YI + L + + KEI+ V RV E TI+N YK++
Sbjct: 247 KGITVGKGPAGVAAAALYIASILEGERRTQKEIAEVARVTEVTIRNRYKEI 297
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 158/303 (52%), Gaps = 21/303 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C ++ D+ + +C +CGLV++ VD EWR F +E D RVG P
Sbjct: 11 ETKCPECGS-DDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 68
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 69 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 128
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y++ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 129 LDRDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEI 188
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
V+ +KKE+GR F+ + L ++++ DY+ RF S LG++ + A
Sbjct: 189 AEVSR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEVQSKAI 241
Query: 233 EAVQKSED--LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLF 290
E ++ + + L R P VAAA +YI + L + K ++++ V V E TI+N YK+L
Sbjct: 242 EIIEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELT 301
Query: 291 PHL 293
L
Sbjct: 302 EQL 304
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 153/293 (52%), Gaps = 14/293 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS--EDLDIRR 245
FI ++L + + +DY+ +F LG++ + + A E ++++ L +
Sbjct: 190 YRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEAYKRGLTSGK 245
Query: 246 SPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298
SP + AA +YI + L + + +E++ V RV E T++N YK+L L +P
Sbjct: 246 SPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLGIKVP 298
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 153/293 (52%), Gaps = 14/293 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E +D EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRS 189
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS--EDLDIRR 245
FI ++L + + +DY+ +F LG++ + + A E ++++ L +
Sbjct: 190 YRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEAYRRGLTSGK 245
Query: 246 SPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298
SP + AA +YI + L + + +E++ V RV E T++N YK+L L +P
Sbjct: 246 SPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLGIKVP 298
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 158/300 (52%), Gaps = 15/300 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C+ E+++D G+ +C++CG V+E +D EWR F + S R G P +
Sbjct: 7 CPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
LL GLST I + +G E + L K Q+R S +RNL A + ++ +L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQL 123
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A
Sbjct: 124 KLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR-VD 182
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS-- 238
KKEIGR+ FI ++L + + + +DY+ +F LG++ + + A E + ++
Sbjct: 183 KKEIGRSYRFIARNL----NLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYK 238
Query: 239 EDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298
L +SP + AA +YI + L + + +E++ V RV E T++N YK+L L +P
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVP 298
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 158/300 (52%), Gaps = 15/300 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C+ E+++D G+ +C++CG V+E +D EWR F + S R G P +
Sbjct: 7 CPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
LL GLST I + +G E + L K Q+R S +RNL A + ++ +L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQL 123
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A
Sbjct: 124 KLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR-VD 182
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKS-- 238
KKEIGR+ FI ++L + + + +DY+ +F LG++ + + A E + ++
Sbjct: 183 KKEIGRSYRFIARNL----NLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYK 238
Query: 239 EDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298
L +SP + AA +YI + L + + +E++ V RV E T++N YK+L L +P
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVP 298
>sp|Q975S1|TF2B_SULTO Transcription initiation factor IIB OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=tfb PE=3
SV=1
Length = 308
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 158/298 (53%), Gaps = 20/298 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++VFD G+ IC+E G V+E ++D+ EWR F E + RVGGPLN + G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI A G T E+L +++AR S DRNL QA + + + L L
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 136
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 137 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 195
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED--L 241
+ R I++ L+ + + DY+ R S LG++ +K A + ++K+++ L
Sbjct: 196 VARCYRLILRELD------INVPVSDPKDYVTRIGSLLGLSGSTMKMAIDIIEKAKESGL 249
Query: 242 DIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPD 299
+ P +AAA IYI L+++ + KEI+ + V E T++N YK+L L IP+
Sbjct: 250 TAGKDPAGLAAAAIYIAALLNDERRTQKEIAQIAGVTEVTVRNRYKELTQELKIQIPN 307
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 155/300 (51%), Gaps = 28/300 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V+ D G+++C +CGLV+E +D EWR F N + + RVG P
Sbjct: 32 CPECG--GQVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRNSK-ERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + A LY + RQ + PR++ E
Sbjct: 146 IERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
+V+ + E R +IV+ L S+E+ + Y+ RF S+L + ++ + ++
Sbjct: 206 ANVSR-IDEMEFKRTYRYIVREL------SLEVAPADPAQYVPRFASDLDLPDEVERRSR 258
Query: 233 EAVQ--KSEDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLF 290
E + +++ + +SP+ +AAA IY + L+N E+S VT V+E TI+N Y++L
Sbjct: 259 ELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEVTIRNRYQELL 318
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 29/307 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
+S C +CK ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 35 ESVCPECKS-RQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 88
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 89 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 148
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 149 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 208
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 209 LDEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLTLKGEVQ 261
Query: 229 KAAQEAVQKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVY 286
A E ++++ + ++ R P VAAA IYI + L + + +E++ V V E TI+N Y
Sbjct: 262 SRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 321
Query: 287 KDLFPHL 293
K+L L
Sbjct: 322 KELAEKL 328
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 145/290 (50%), Gaps = 20/290 (6%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
T++VF+ G+ +C+ CG ++ VD+ EWR F E + R G PL+P L GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVIAKPTAGGSTELLS-------GSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGL 122
STVI + LS L K Q R+ + DRNL A + M++ L L
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNL 135
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
IK+ A IY+K ++ +RGR+ E++VAA +Y ACR ++PRT+ E +K
Sbjct: 136 PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKKLE-VNRK 194
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLD 242
E+ R I K L+ +++ A D++ R L + ++ A + ++K +
Sbjct: 195 EVARCYRLITKELK------LKVPIADAMDHIPRIGEALKLRGDIIEYAMKIMEKIKGHP 248
Query: 243 IR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLF 290
I + P +AAAVIYI + + KEI+ V V E T++N YK++
Sbjct: 249 ITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEVTVRNRYKEIM 298
>sp|A3CSQ6|TF2B_METMJ Transcription initiation factor IIB OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1
Length = 337
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 151/306 (49%), Gaps = 29/306 (9%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
S C +C ++V D+ + +C CGLVL+ +D EWR F DHD RV
Sbjct: 39 SVCPECGS-RQLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAF-----DHDQRMKRSRV 92
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 93 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 152
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT+
Sbjct: 153 LSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229
E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 213 DEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLNLKGEVQS 265
Query: 230 AAQEAVQKS--EDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYK 287
A E ++++ +L R P VAAA IYI + L + + +E++ V V E TI+N YK
Sbjct: 266 RAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 325
Query: 288 DLFPHL 293
+L L
Sbjct: 326 ELAEKL 331
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 149/295 (50%), Gaps = 23/295 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D S + +C +CGLVLE +D EWR F N S RVG P
Sbjct: 25 CPECNSAN-VITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLS----GSLGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S + L K Q R D RNL A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + ACLY ACRQE PRT++E V
Sbjct: 141 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEV 200
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
A +KEIGR ++ + L S+E+ +YL RF S+L ++ + + A+E +
Sbjct: 201 AR-IDQKEIGRTYRYVAQEL------SLEIQPTDPKEYLPRFASDLELSEEVIAKAREII 253
Query: 236 QKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKD 288
S + + +SP AAA IY + L N+ K +E++ V V E TI+N Y++
Sbjct: 254 DTSAEQGLLSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVTEVTIRNRYQE 308
>sp|Q9UWN6|TF2B_SULAC Transcription initiation factor IIB OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=tfb PE=3 SV=2
Length = 307
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 155/297 (52%), Gaps = 20/297 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ IC+E G V+E +D+ EWR F E + RVGGPLN + G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI K G S E+L +++ R S DRNL QA + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 194
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED--L 241
+ R I++ L+ +E+ DY+ R + L ++ +K A E ++K+++ L
Sbjct: 195 VARCYRLILRELD------IEVPVSDPKDYVTRIGTLLSLSGITMKHAAEIIEKAKNSGL 248
Query: 242 DIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298
+ P +AAA IYI L+++ + KEI+ V V E T++N YK+L L IP
Sbjct: 249 TAGKDPAGLAAAAIYIAALLNDERRTQKEIAQVAGVTEVTVRNRYKELTQELKIQIP 305
>sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Methanoregula boonei (strain
6A8) GN=tfb PE=3 SV=1
Length = 334
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 152/307 (49%), Gaps = 29/307 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
++ C +C ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 35 ETVCPECGG-RQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 88
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 89 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 148
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 149 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 208
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAV 228
+ E V+ ++KEIGR FI + L +++ DY+ RFCS L + +
Sbjct: 209 LDEIAEVSR-VSRKEIGRTYRFISREL------GLKLLPTSPIDYVPRFCSGLTLKGEVQ 261
Query: 229 KAAQEAVQKS--EDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVY 286
A E ++++ +L R P VAAA IYI + L + + +E++ V V E TI+N Y
Sbjct: 262 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 321
Query: 287 KDLFPHL 293
K+L L
Sbjct: 322 KELAEKL 328
>sp|A0B5T8|TF2B_METTP Transcription initiation factor IIB OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=tfb PE=3 SV=1
Length = 337
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 156/309 (50%), Gaps = 30/309 (9%)
Query: 3 DSYCADCKRLTE--VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP---- 56
D Y +C +V D+ + +CSECGLV++ +D+ EWR F DHD
Sbjct: 35 DKYTVECPECGSRALVRDYERAELVCSECGLVIDENFIDQGPEWRAF-----DHDQRMKR 89
Query: 57 VRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNL 106
RVG P+ + GLST+I + +S L K Q R S+ +RNL
Sbjct: 90 SRVGAPMTYTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNL 149
Query: 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKP 166
A + M+ LGL +++ A IY++ ++ +RGR+ E + AA LY ACRQ N P
Sbjct: 150 AFALSELDRMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVP 209
Query: 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226
RT+ E V+ ++KEIGR F+ + L S+++ DY+ RFCS L +
Sbjct: 210 RTLDEIAEVSR-VSRKEIGRTYRFVSREL------SLKLMPTSPIDYIPRFCSGLNLKGD 262
Query: 227 AVKAAQEAVQKS--EDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKN 284
E ++++ ++L R P VAAA IYI + L ND + +E++ V V E TI+N
Sbjct: 263 VQAKGIEILRQAAEKELTSGRGPTGVAAAAIYIASILCNDRRTQREVADVAGVTEVTIRN 322
Query: 285 VYKDLFPHL 293
YK+L L
Sbjct: 323 RYKELAEEL 331
>sp|Q9HSB3|TF2B6_HALSA Transcription initiation factor IIB 6 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbF PE=3
SV=1
Length = 319
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 152/299 (50%), Gaps = 26/299 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L VV D G+++C++CGLV+E +D EWR F ++ D + RVG P
Sbjct: 25 CPECGGL--VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTN 81
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L S K+Q +RNL QA I
Sbjct: 82 TMHDKGLSTNIDWRDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEI 139
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + +C+Y A RQ PR++ E
Sbjct: 140 DRMASALGLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIA 199
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQE 233
V+ K EI R ++V+ L +E+ Y+ RF S+LG++++A A+E
Sbjct: 200 DVSR-VEKAEIARTYRYVVREL------GLEVAPADPESYVPRFASDLGLSDEASHRARE 252
Query: 234 AVQKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLF 290
++ ++D + +SP+ +AAA +Y L+N+ ++S V ++E TI+N Y +L
Sbjct: 253 LLKTAKDKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVADISEVTIRNRYHELL 311
>sp|A8MCX6|TF2B_CALMQ Transcription initiation factor IIB OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=tfb PE=3 SV=1
Length = 336
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 141/292 (48%), Gaps = 14/292 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSG--- 69
T + D G +C+ CG VL + +D EWR F E + D R GGPL + S
Sbjct: 51 TVFIEDAERGQIVCASCGYVLMEHILDTGPEWRAFTPEEKE-DRARTGGPLERVTSEELV 109
Query: 70 GGLSTVIAKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
+ T + P E+L + + R + +RNL+QA ++ ++ +LG+ + D
Sbjct: 110 TRIETTLKSPDLKKKLEILKYKKWQQRIRVQTSYERNLVQATHELNRIAHQLGVPKSCMD 169
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A +YK+V ++GR+ EAI+AACL++ACR + PR++ E +KEI R
Sbjct: 170 EALAVYKQVLKSGLVKGRSVEAIIAACLHMACRMQGMPRSLDEISQYTRA-PRKEIARCF 228
Query: 189 EFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRS 246
I + L + S Y+ + L + K A +++++D L +
Sbjct: 229 RLIARELRIRLPLS------DPRQYVPKIVEQLKLPGDIAKEAIRVLEEAKDKGLTAGKD 282
Query: 247 PISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298
P +AAA +YI + L + + KEI+ +V E T++N YK+L L IP
Sbjct: 283 PAGLAAAAVYIASLLKGEVRTQKEIAQAAQVTEVTVRNRYKELAKELNIKIP 334
>sp|Q8TT29|TF2B_METAC Transcription initiation factor IIB OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=tfb
PE=3 SV=1
Length = 337
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 157/304 (51%), Gaps = 29/304 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C +V D+ + +C +CGLV++A VDE EWR F DHD RVG
Sbjct: 41 CPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L ++++ DY+ RFCS L + + +
Sbjct: 215 IEEVSR-VSRKEIGRTYRFISREL------ALKLMPTSPIDYVPRFCSGLNLKGEVQSKS 267
Query: 232 QEAVQKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDL 289
E ++++ + ++ R P VAAA IYI + L + + +E++ V V E TI+N YK+L
Sbjct: 268 VEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYKEL 327
Query: 290 FPHL 293
L
Sbjct: 328 AEEL 331
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 146/295 (49%), Gaps = 21/295 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V + +C++CGLV+E +D EWR F N + RVG P
Sbjct: 29 CPECGS-DNLVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 206
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAV 235
+ +KEIGR +I + L +EM + Y+ RFCS L +T + A E +
Sbjct: 207 SR-VERKEIGRTYRYISQEL------GLEMKPVDPKKYVPRFCSELELTEEVQSKANEII 259
Query: 236 QKS--EDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKD 288
+ + E L +SP AAA IY + L N+ K +E++ V +V E TI+N Y++
Sbjct: 260 ETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 314
>sp|P0CW14|TF2B_METMZ Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb
PE=3 SV=1
Length = 337
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 157/304 (51%), Gaps = 29/304 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C +V D+ + +C +CGLV++A VDE EWR F DHD RVG
Sbjct: 41 CPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L ++++ DY+ RFCS L + + +
Sbjct: 215 IEEVSR-VSRKEIGRTYRFISREL------ALKLMPTSPIDYVPRFCSGLNLKGEVQSKS 267
Query: 232 QEAVQKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDL 289
E ++++ + ++ R P VAAA IYI + L + + +E++ V V E TI+N YK+L
Sbjct: 268 VEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYKEL 327
Query: 290 FPHL 293
L
Sbjct: 328 AEEL 331
>sp|P0CW15|TF2B_METMA Transcription initiation factor IIB OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=tfb PE=3 SV=1
Length = 337
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 157/304 (51%), Gaps = 29/304 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C +V D+ + +C +CGLV++A VDE EWR F DHD RVG
Sbjct: 41 CPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231
V+ ++KEIGR FI + L ++++ DY+ RFCS L + + +
Sbjct: 215 IEEVSR-VSRKEIGRTYRFISREL------ALKLMPTSPIDYVPRFCSGLNLKGEVQSKS 267
Query: 232 QEAVQKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDL 289
E ++++ + ++ R P VAAA IYI + L + + +E++ V V E TI+N YK+L
Sbjct: 268 VEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYKEL 327
Query: 290 FPHL 293
L
Sbjct: 328 AEEL 331
>sp|Q9YGA5|TFB2_HALVD Transcription initiation factor IIB 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=tfb2 PE=1 SV=1
Length = 332
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 24/298 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC +CGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + + LY + R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEA 234
V+ K E+ R +IV+ L+ +E+ Y+ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELK------LEIKPADPEQYVPRFASELGLSDEAERQARQL 265
Query: 235 VQKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLF 290
++ +++ I +SP+ +AAA +Y L+N+ E+S V ++E TI+N YK+L
Sbjct: 266 LRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELL 323
>sp|Q9HR45|TF2B4_HALSA Transcription initiation factor IIB 4 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbD PE=3
SV=1
Length = 328
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 148/300 (49%), Gaps = 22/300 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C ++V D G+T C ECGLV+E +D EWR F + D + RVG P
Sbjct: 29 DHGCPECN--GDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAFNAQEQD-EKSRVGAP 85
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKS 112
++ GLST I LSG L K R + +RNL QA
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ GL ++++ A+ IY++ + L GR+ E + + LY A RQ N PR++ E
Sbjct: 146 IERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232
SV+ + EI R ++ + L S+E+ + Y+ RFCS+L ++ + A+
Sbjct: 206 ASVSR-VDRGEIARTYRYVAREL------SLEVAPTDPASYVPRFCSDLELSGDVERRAR 258
Query: 233 EAVQKSEDLDIR--RSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLF 290
+ + + D I +SP+ +AAA +Y L+N+ E+S V V+E TI+N Y ++
Sbjct: 259 DLLAAAADAGITSGKSPVGLAAASVYAAALLTNERVTQNEVSTVANVSEVTIRNRYHEIL 318
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,373,095
Number of Sequences: 539616
Number of extensions: 4363453
Number of successful extensions: 12932
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 12512
Number of HSP's gapped (non-prelim): 134
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)