Query 021438
Match_columns 312
No_of_seqs 197 out of 1138
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 04:09:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 9.9E-77 3.4E-81 546.9 12.0 307 3-312 21-341 (345)
2 3k7a_M Transcription initiatio 100.0 1.3E-72 4.5E-77 521.1 8.4 306 3-312 21-341 (345)
3 1c9b_A General transcription f 100.0 9.5E-45 3.3E-49 312.8 25.7 204 102-312 1-206 (207)
4 1ais_B TFB TFIIB, protein (tra 100.0 3.1E-43 1.1E-47 301.8 25.0 192 100-298 3-198 (200)
5 1zp2_A RNA polymerase II holoe 99.9 4.1E-26 1.4E-30 200.0 20.2 182 106-294 28-219 (235)
6 2ivx_A Cyclin-T2; transcriptio 99.9 2.4E-23 8.2E-28 184.7 21.4 182 107-294 32-239 (257)
7 2i53_A Cyclin K; cell cycle, t 99.9 2.1E-23 7E-28 185.3 21.0 182 107-294 42-250 (258)
8 2b9r_A Human cyclin B1; cell c 99.9 9.4E-23 3.2E-27 182.0 21.7 182 107-294 39-224 (269)
9 3rgf_B Cyclin-C; protein kinas 99.9 1.5E-22 5.2E-27 182.0 21.8 183 103-293 39-240 (285)
10 2cch_B Cyclin A2, cyclin-A; co 99.9 5.7E-22 2E-26 176.1 21.4 182 107-294 40-227 (260)
11 2w96_A G1/S-specific cyclin-D1 99.9 2.9E-21 9.8E-26 172.6 22.4 188 107-300 58-262 (271)
12 2pk2_A Cyclin-T1, protein TAT; 99.9 1.6E-22 5.4E-27 187.1 13.6 182 107-294 39-246 (358)
13 1jkw_A Cyclin H; cell cycle, c 99.9 5.4E-20 1.9E-24 168.0 20.7 185 102-293 52-259 (323)
14 1g3n_C V-cyclin; cyclin-depend 99.8 4.3E-20 1.5E-24 163.7 19.1 183 107-295 52-248 (257)
15 2f2c_A Cyclin homolog, V-cycli 99.8 1.4E-19 4.8E-24 160.1 20.4 182 107-294 53-247 (254)
16 1w98_B Cyclin E, G1/S-specific 99.8 1.9E-18 6.4E-23 155.2 21.0 176 107-295 51-242 (283)
17 3g33_B CCND3 protein; Ser/Thr 99.8 6.8E-18 2.3E-22 153.0 20.1 185 107-297 72-269 (306)
18 3k1f_M Transcription initiatio 99.8 3.5E-20 1.2E-24 148.4 3.7 66 3-68 21-88 (197)
19 1dl6_A Transcription factor II 99.7 1.9E-18 6.6E-23 116.4 4.5 47 3-50 11-57 (58)
20 1pft_A TFIIB, PFTFIIBN; N-term 99.6 1E-15 3.6E-20 100.4 4.7 44 4-48 6-49 (50)
21 1f5q_B Gamma herpesvirus cycli 99.5 1.8E-12 6E-17 114.1 21.4 180 107-294 50-241 (252)
22 1ais_B TFB TFIIB, protein (tra 99.5 1.2E-13 4.2E-18 117.5 12.2 89 108-197 107-195 (200)
23 1c9b_A General transcription f 99.3 1E-11 3.5E-16 106.1 11.6 89 108-197 101-189 (207)
24 4bbr_M Transcription initiatio 99.0 1.6E-09 5.6E-14 99.3 10.9 89 207-295 126-216 (345)
25 3k7a_M Transcription initiatio 98.9 1.7E-10 5.7E-15 106.1 0.0 87 109-196 235-321 (345)
26 1zp2_A RNA polymerase II holoe 98.1 2.7E-05 9.2E-10 67.3 11.8 85 211-295 32-127 (235)
27 3h4c_A Transcription factor TF 97.8 0.00052 1.8E-08 56.5 13.5 115 109-226 15-132 (260)
28 2cch_B Cyclin A2, cyclin-A; co 97.6 0.00024 8.1E-09 62.3 8.7 89 108-197 138-228 (260)
29 2b9r_A Human cyclin B1; cell c 97.5 0.00012 4.2E-09 64.5 6.4 87 109-196 138-224 (269)
30 2i53_A Cyclin K; cell cycle, t 97.5 0.00048 1.7E-08 60.1 10.2 84 211-294 45-143 (258)
31 3rgf_B Cyclin-C; protein kinas 97.5 0.00056 1.9E-08 60.8 10.2 86 109-197 157-242 (285)
32 2ivx_A Cyclin-T2; transcriptio 97.5 0.00067 2.3E-08 59.2 10.2 66 211-276 35-102 (257)
33 1jkw_A Cyclin H; cell cycle, c 97.4 0.00095 3.3E-08 60.4 11.3 84 212-295 62-156 (323)
34 3m03_A ORC6, origin recognitio 97.3 0.0015 5E-08 47.6 8.4 80 113-195 6-91 (95)
35 2pk2_A Cyclin-T1, protein TAT; 97.1 0.0011 3.6E-08 60.9 8.1 65 211-275 42-108 (358)
36 2f2c_A Cyclin homolog, V-cycli 97.0 0.0023 8E-08 55.7 8.7 86 110-196 153-247 (254)
37 2w96_A G1/S-specific cyclin-D1 97.0 0.0046 1.6E-07 54.3 10.4 85 211-295 61-150 (271)
38 1g3n_C V-cyclin; cyclin-depend 96.9 0.0024 8.2E-08 55.7 7.8 88 109-197 151-248 (257)
39 2js4_A UPF0434 protein BB2007; 96.9 0.00079 2.7E-08 46.4 3.5 30 2-33 7-36 (70)
40 2jr6_A UPF0434 protein NMA0874 96.8 0.0009 3.1E-08 45.8 3.3 30 2-33 7-36 (68)
41 2jny_A Uncharacterized BCR; st 96.8 0.00098 3.3E-08 45.5 3.3 30 2-33 9-38 (67)
42 2pk7_A Uncharacterized protein 96.6 0.00092 3.1E-08 45.9 2.5 30 2-33 7-36 (69)
43 1qxf_A GR2, 30S ribosomal prot 96.6 0.00093 3.2E-08 44.8 2.4 31 4-35 8-38 (66)
44 2hf1_A Tetraacyldisaccharide-1 96.6 0.00082 2.8E-08 46.0 2.0 29 3-33 8-36 (68)
45 1w98_B Cyclin E, G1/S-specific 96.6 0.016 5.4E-07 51.2 10.6 85 211-295 54-144 (283)
46 3j20_W 30S ribosomal protein S 96.5 0.0012 4.2E-08 43.9 2.4 31 4-35 16-46 (63)
47 1vq8_Z 50S ribosomal protein L 96.5 0.001 3.6E-08 47.4 2.0 30 4-35 28-57 (83)
48 2xzm_6 RPS27E; ribosome, trans 96.2 0.0022 7.4E-08 44.9 2.3 31 4-35 33-63 (81)
49 2r7g_A PP110, retinoblastoma-a 96.1 0.015 5.2E-07 52.6 8.0 71 107-177 216-289 (347)
50 3u5c_b RP61, YS20, 40S ribosom 96.1 0.0025 8.6E-08 44.6 2.2 31 4-35 35-65 (82)
51 3g33_B CCND3 protein; Ser/Thr 96.1 0.017 5.9E-07 51.6 8.4 87 110-197 172-267 (306)
52 4ell_A Retinoblastoma-associat 96.1 0.014 4.6E-07 54.0 7.8 70 108-177 281-353 (411)
53 2akl_A PHNA-like protein PA012 95.9 0.014 4.7E-07 44.5 5.8 29 2-33 26-54 (138)
54 3iz6_X 40S ribosomal protein S 95.9 0.0034 1.2E-07 44.4 2.0 31 4-35 37-67 (86)
55 2qdj_A Retinoblastoma-associat 95.8 0.044 1.5E-06 48.7 9.5 71 112-184 5-80 (304)
56 3m03_A ORC6, origin recognitio 95.7 0.056 1.9E-06 39.2 8.1 79 214-294 6-92 (95)
57 3j20_Y 30S ribosomal protein S 95.6 0.0069 2.4E-07 38.7 2.6 28 4-33 20-47 (50)
58 4elj_A Retinoblastoma-associat 95.5 0.044 1.5E-06 53.5 9.0 71 107-177 525-598 (656)
59 2k4x_A 30S ribosomal protein S 95.1 0.012 4E-07 38.4 2.5 28 3-32 18-45 (55)
60 2kpi_A Uncharacterized protein 94.4 0.034 1.2E-06 36.4 3.3 28 2-33 9-38 (56)
61 2r7g_A PP110, retinoblastoma-a 93.4 1.4 4.9E-05 39.7 13.2 127 149-276 105-289 (347)
62 4elj_A Retinoblastoma-associat 93.2 0.53 1.8E-05 46.0 10.7 72 111-184 6-82 (656)
63 2k5r_A Uncharacterized protein 93.0 0.045 1.6E-06 39.9 2.2 31 1-33 6-63 (97)
64 1twf_I B12.6, DNA-directed RNA 93.0 0.054 1.9E-06 41.5 2.8 34 1-34 2-37 (122)
65 2pmi_B PHO85 cyclin PHO80, ami 92.9 2.7 9.1E-05 36.9 13.7 105 109-221 77-185 (293)
66 2jt1_A PEFI protein; solution 92.3 0.11 3.6E-06 36.4 3.3 30 263-292 22-51 (77)
67 1k81_A EIF-2-beta, probable tr 92.3 0.06 2E-06 31.8 1.6 28 5-32 2-30 (36)
68 3h0g_I DNA-directed RNA polyme 92.3 0.1 3.5E-06 39.4 3.4 31 2-34 3-37 (113)
69 6rxn_A Rubredoxin; electron tr 91.6 0.055 1.9E-06 33.8 1.0 27 1-31 2-38 (46)
70 1nui_A DNA primase/helicase; z 91.5 0.11 3.9E-06 44.8 3.3 28 4-32 15-42 (255)
71 2jpc_A SSRB; DNA binding prote 91.2 0.21 7.1E-06 32.5 3.7 31 265-295 13-43 (61)
72 1qyp_A RNA polymerase II; tran 90.9 0.16 5.6E-06 33.1 2.9 31 4-35 16-55 (57)
73 3j21_i 50S ribosomal protein L 90.7 0.14 4.7E-06 36.1 2.4 32 3-36 35-66 (83)
74 1twf_L ABC10-alpha, DNA-direct 90.6 0.11 3.8E-06 35.5 1.8 28 4-34 29-57 (70)
75 4rxn_A Rubredoxin; electron tr 90.4 0.12 4.1E-06 33.4 1.8 18 1-22 1-18 (54)
76 3jyw_9 60S ribosomal protein L 90.4 0.16 5.5E-06 34.8 2.5 32 3-36 26-57 (72)
77 3h4c_A Transcription factor TF 90.3 2.8 9.7E-05 34.6 10.2 79 212-291 17-100 (260)
78 1jhg_A Trp operon repressor; c 90.1 0.15 5.2E-06 37.5 2.3 34 263-297 56-89 (101)
79 1e8j_A Rubredoxin; iron-sulfur 90.1 0.12 4.1E-06 33.2 1.5 10 1-10 1-10 (52)
80 1t6s_A Conserved hypothetical 90.0 1.5 5E-05 35.1 8.3 111 150-292 10-132 (162)
81 2w7n_A TRFB transcriptional re 89.9 0.66 2.3E-05 34.1 5.7 39 262-300 31-70 (101)
82 1je8_A Nitrate/nitrite respons 89.9 0.47 1.6E-05 33.2 4.8 32 264-295 35-66 (82)
83 3iz5_m 60S ribosomal protein L 89.8 0.18 6.3E-06 36.2 2.5 31 3-35 36-66 (92)
84 2p7v_B Sigma-70, RNA polymeras 89.8 0.45 1.5E-05 31.8 4.5 34 264-297 24-57 (68)
85 2lnb_A Z-DNA-binding protein 1 89.8 0.49 1.7E-05 32.7 4.5 42 155-197 23-64 (80)
86 1ffk_W Ribosomal protein L37AE 89.8 0.15 5.3E-06 35.0 2.0 32 3-36 27-58 (73)
87 3cc2_Z 50S ribosomal protein L 89.8 0.15 5E-06 38.2 2.0 32 3-36 60-91 (116)
88 3izc_m 60S ribosomal protein R 89.5 0.19 6.4E-06 36.1 2.3 31 3-35 36-66 (92)
89 3ulq_B Transcriptional regulat 89.2 0.41 1.4E-05 34.3 4.1 31 265-295 44-74 (90)
90 1fse_A GERE; helix-turn-helix 89.0 0.61 2.1E-05 31.4 4.8 31 265-295 26-56 (74)
91 1tc3_C Protein (TC3 transposas 88.9 0.19 6.7E-06 30.7 1.9 25 265-289 21-45 (51)
92 4a17_Y RPL37A, 60S ribosomal p 88.6 0.21 7.1E-06 36.5 2.1 31 3-35 36-66 (103)
93 1f5q_B Gamma herpesvirus cycli 88.6 3.1 0.00011 35.7 10.0 84 211-294 53-141 (252)
94 2o8x_A Probable RNA polymerase 88.4 0.53 1.8E-05 31.3 4.1 34 264-297 30-63 (70)
95 2qdj_A Retinoblastoma-associat 88.2 2.3 7.8E-05 37.6 9.0 68 215-282 7-80 (304)
96 1x3u_A Transcriptional regulat 88.0 0.77 2.6E-05 31.4 4.8 32 264-295 30-61 (79)
97 3qt1_I DNA-directed RNA polyme 87.7 0.31 1.1E-05 37.8 2.7 32 2-33 23-56 (133)
98 3u50_C Telomerase-associated p 87.6 0.31 1.1E-05 39.5 2.8 28 4-35 43-70 (172)
99 1wii_A Hypothetical UPF0222 pr 87.4 0.17 5.7E-06 36.0 0.9 32 4-35 24-59 (85)
100 4ell_A Retinoblastoma-associat 87.2 1.4 4.9E-05 40.6 7.3 70 214-283 286-360 (411)
101 1tty_A Sigma-A, RNA polymerase 87.2 0.78 2.7E-05 32.4 4.5 34 264-297 37-70 (87)
102 3hug_A RNA polymerase sigma fa 87.2 0.45 1.5E-05 33.9 3.2 34 264-297 52-85 (92)
103 2pmi_B PHO85 cyclin PHO80, ami 87.1 10 0.00035 33.2 12.4 91 204-294 71-167 (293)
104 1ku3_A Sigma factor SIGA; heli 87.1 0.81 2.8E-05 31.0 4.4 34 264-297 29-63 (73)
105 3c57_A Two component transcrip 86.7 0.69 2.4E-05 33.3 4.1 31 265-295 42-72 (95)
106 2rnj_A Response regulator prot 86.0 0.68 2.3E-05 32.9 3.6 31 265-295 44-74 (91)
107 1gnf_A Transcription factor GA 85.6 0.25 8.7E-06 30.7 1.0 32 2-33 3-35 (46)
108 1dxg_A Desulforedoxin; non-hem 85.3 0.48 1.7E-05 27.7 2.1 26 3-31 6-31 (36)
109 3ga8_A HTH-type transcriptiona 84.9 0.53 1.8E-05 32.7 2.5 31 3-34 2-47 (78)
110 2x48_A CAG38821; archeal virus 84.8 0.64 2.2E-05 29.4 2.7 23 265-287 31-53 (55)
111 1p4w_A RCSB; solution structur 84.6 0.96 3.3E-05 33.0 3.9 31 265-295 49-79 (99)
112 1uxc_A FRUR (1-57), fructose r 84.5 0.78 2.7E-05 30.7 3.1 22 266-287 1-22 (65)
113 1qbj_A Protein (double-strande 84.5 1.1 3.9E-05 31.3 4.1 30 263-292 25-54 (81)
114 1gh9_A 8.3 kDa protein (gene M 84.2 0.5 1.7E-05 32.3 2.0 28 4-35 5-32 (71)
115 2v3b_B Rubredoxin 2, rubredoxi 84.1 0.37 1.3E-05 31.2 1.3 19 1-23 1-19 (55)
116 1tfi_A Transcriptional elongat 83.9 0.85 2.9E-05 28.9 2.9 30 3-32 9-46 (50)
117 3j21_g 50S ribosomal protein L 83.5 0.3 1E-05 31.1 0.6 23 4-32 15-37 (51)
118 1qgp_A Protein (double strande 83.1 1.3 4.5E-05 30.6 3.9 29 264-292 30-58 (77)
119 3i4p_A Transcriptional regulat 82.9 1.7 5.7E-05 34.5 5.1 30 263-292 15-44 (162)
120 1j1v_A Chromosomal replication 82.8 11 0.00037 27.0 9.4 71 209-294 2-76 (94)
121 2heo_A Z-DNA binding protein 1 82.3 1.8 6E-05 28.9 4.2 31 262-292 22-52 (67)
122 2htj_A P fimbrial regulatory p 82.2 2.2 7.5E-05 29.4 4.9 29 264-292 13-41 (81)
123 4ham_A LMO2241 protein; struct 81.7 1 3.6E-05 34.5 3.3 30 263-292 35-65 (134)
124 3neu_A LIN1836 protein; struct 81.6 1.4 4.7E-05 33.5 3.9 30 263-292 34-64 (125)
125 1dx8_A Rubredoxin; electron tr 81.6 0.56 1.9E-05 32.0 1.5 11 24-34 8-18 (70)
126 2vut_I AREA, nitrogen regulato 81.5 0.49 1.7E-05 29.0 1.0 30 4-33 2-32 (43)
127 1oyi_A Double-stranded RNA-bin 81.1 1.7 5.9E-05 30.5 3.9 39 266-304 31-74 (82)
128 1q1h_A TFE, transcription fact 81.0 2.3 8E-05 31.0 4.9 31 262-292 30-60 (110)
129 2apo_B Ribosome biogenesis pro 80.6 0.64 2.2E-05 30.6 1.4 25 2-34 5-29 (60)
130 2o3f_A Putative HTH-type trans 80.5 5.7 0.0002 29.3 7.0 54 213-288 8-62 (111)
131 2kn9_A Rubredoxin; metalloprot 80.5 0.59 2E-05 32.8 1.3 16 21-36 25-40 (81)
132 2cg4_A Regulatory protein ASNC 80.1 2.5 8.4E-05 32.9 5.1 30 263-292 20-49 (152)
133 2e9h_A EIF-5, eukaryotic trans 80.1 1.4 4.7E-05 35.0 3.5 29 4-32 104-135 (157)
134 2dbb_A Putative HTH-type trans 80.0 2.5 8.6E-05 32.8 5.1 30 263-292 21-50 (151)
135 2cfx_A HTH-type transcriptiona 79.8 2.5 8.5E-05 32.6 5.0 30 263-292 17-46 (144)
136 2z99_A Putative uncharacterize 79.8 1.8 6.2E-05 36.3 4.3 112 149-292 17-138 (219)
137 2cyy_A Putative HTH-type trans 79.7 2.6 8.8E-05 32.8 5.0 30 263-292 19-48 (151)
138 2e1c_A Putative HTH-type trans 79.6 2.5 8.4E-05 33.9 5.0 29 264-292 40-68 (171)
139 4gat_A Nitrogen regulatory pro 79.5 0.54 1.8E-05 31.7 0.8 32 3-34 9-41 (66)
140 3iwf_A Transcription regulator 79.5 6.7 0.00023 28.8 7.0 53 214-288 5-58 (107)
141 2kae_A GATA-type transcription 79.5 0.45 1.5E-05 32.5 0.4 29 4-33 9-40 (71)
142 3tqn_A Transcriptional regulat 79.3 1.5 5E-05 32.6 3.3 30 263-292 30-60 (113)
143 1xn7_A Hypothetical protein YH 79.2 2.1 7.3E-05 29.7 3.9 29 264-292 15-43 (78)
144 1jko_C HIN recombinase, DNA-in 79.1 0.77 2.6E-05 28.2 1.4 23 266-288 22-44 (52)
145 2b0l_A GTP-sensing transcripti 78.8 1.3 4.4E-05 32.4 2.8 30 263-292 40-70 (102)
146 2pn6_A ST1022, 150AA long hypo 78.8 2.9 9.8E-05 32.4 5.1 30 263-292 15-44 (150)
147 1l1o_C Replication protein A 7 78.4 1.1 3.6E-05 36.6 2.4 28 4-34 44-73 (181)
148 2p5k_A Arginine repressor; DNA 78.4 4 0.00014 26.3 5.0 27 263-289 17-48 (64)
149 1i1g_A Transcriptional regulat 78.4 3.1 0.0001 31.8 5.0 30 263-292 16-45 (141)
150 2p5v_A Transcriptional regulat 78.1 2.9 0.0001 32.9 5.0 30 263-292 22-51 (162)
151 2ia0_A Putative HTH-type trans 77.7 3 0.0001 33.4 5.0 30 263-292 29-58 (171)
152 3frw_A Putative Trp repressor 77.2 2.8 9.4E-05 31.0 4.1 32 260-291 53-84 (107)
153 2ek5_A Predicted transcription 77.2 2.3 7.8E-05 32.5 3.9 30 263-292 25-55 (129)
154 1s7o_A Hypothetical UPF0122 pr 77.1 2.6 9.1E-05 31.3 4.1 32 265-296 38-69 (113)
155 3by6_A Predicted transcription 77.1 1.8 6.2E-05 32.9 3.3 30 263-292 32-62 (126)
156 2w48_A Sorbitol operon regulat 76.7 3.2 0.00011 36.7 5.3 32 261-292 17-48 (315)
157 3lwf_A LIN1550 protein, putati 76.7 3.7 0.00013 32.6 5.2 40 253-292 32-71 (159)
158 1l3l_A Transcriptional activat 76.6 2.8 9.7E-05 35.2 4.7 32 264-295 187-218 (234)
159 3mzy_A RNA polymerase sigma-H 76.6 1.8 6.2E-05 33.5 3.3 34 264-297 123-156 (164)
160 3e6c_C CPRK, cyclic nucleotide 76.3 13 0.00044 30.9 8.9 29 264-292 176-204 (250)
161 2w25_A Probable transcriptiona 76.3 3.6 0.00012 31.8 5.0 30 263-292 19-48 (150)
162 1xsv_A Hypothetical UPF0122 pr 76.3 3.9 0.00013 30.3 4.9 33 264-296 40-72 (113)
163 1s24_A Rubredoxin 2; electron 76.2 0.75 2.5E-05 32.7 0.8 16 21-36 33-48 (87)
164 2l8n_A Transcriptional repress 76.1 1.9 6.5E-05 28.9 2.8 22 265-286 9-30 (67)
165 2lfw_A PHYR sigma-like domain; 76.0 3.8 0.00013 32.0 5.1 34 264-297 108-141 (157)
166 2jne_A Hypothetical protein YF 75.9 2.2 7.6E-05 30.7 3.2 28 1-33 31-58 (101)
167 2d1h_A ST1889, 109AA long hypo 75.9 3.1 0.00011 29.7 4.3 30 263-292 34-63 (109)
168 1l9z_H Sigma factor SIGA; heli 75.9 50 0.0017 30.6 18.9 31 264-294 394-424 (438)
169 2jt1_A PEFI protein; solution 75.5 4.8 0.00016 27.8 4.8 30 164-194 22-51 (77)
170 2ct7_A Ring finger protein 31; 75.4 2 6.7E-05 30.4 2.8 27 5-33 27-53 (86)
171 3pqk_A Biofilm growth-associat 75.3 4.2 0.00014 29.2 4.8 29 264-292 35-63 (102)
172 2zjr_Z 50S ribosomal protein L 75.3 1.2 4.1E-05 29.3 1.5 24 4-34 31-54 (60)
173 3lwf_A LIN1550 protein, putati 75.3 6 0.00021 31.3 6.0 47 147-194 25-71 (159)
174 3t72_q RNA polymerase sigma fa 75.2 3.3 0.00011 30.1 4.1 30 264-293 38-67 (99)
175 2y75_A HTH-type transcriptiona 75.1 6.4 0.00022 29.6 6.0 30 263-292 24-53 (129)
176 3r0a_A Putative transcriptiona 75.0 4.1 0.00014 30.6 4.8 39 254-292 30-69 (123)
177 3o9x_A Uncharacterized HTH-typ 74.8 1.3 4.6E-05 33.6 2.0 22 165-187 83-104 (133)
178 3szt_A QCSR, quorum-sensing co 74.8 2.6 9E-05 35.5 4.1 32 264-295 189-220 (237)
179 2jrp_A Putative cytoplasmic pr 74.6 2.3 7.8E-05 29.7 2.9 29 1-34 1-29 (81)
180 3jth_A Transcription activator 74.4 3.8 0.00013 29.1 4.3 29 264-292 35-63 (98)
181 2q0o_A Probable transcriptiona 74.4 2.7 9.3E-05 35.3 4.0 32 264-295 189-220 (236)
182 3kor_A Possible Trp repressor; 74.0 2.7 9.2E-05 31.7 3.4 33 258-290 68-100 (119)
183 3dfx_A Trans-acting T-cell-spe 74.0 0.69 2.4E-05 30.8 0.1 31 4-34 8-39 (63)
184 2heo_A Z-DNA binding protein 1 73.3 6.2 0.00021 26.1 4.9 32 161-193 20-51 (67)
185 1j5y_A Transcriptional regulat 73.3 5.1 0.00018 32.4 5.3 30 263-292 34-63 (187)
186 1v4r_A Transcriptional repress 73.2 1 3.6E-05 32.6 0.9 29 264-292 33-62 (102)
187 1or7_A Sigma-24, RNA polymeras 72.7 2.8 9.4E-05 33.6 3.5 34 264-297 155-188 (194)
188 3nrv_A Putative transcriptiona 72.6 6.9 0.00024 29.7 5.7 28 265-292 54-81 (148)
189 1ylf_A RRF2 family protein; st 72.5 3.8 0.00013 31.9 4.2 39 253-292 19-57 (149)
190 1vk6_A NADH pyrophosphatase; 1 72.5 2.6 8.8E-05 36.6 3.5 30 3-34 107-136 (269)
191 3v2d_5 50S ribosomal protein L 72.3 1.1 3.7E-05 29.5 0.8 23 4-33 31-53 (60)
192 3t8r_A Staphylococcus aureus C 72.1 3.5 0.00012 32.0 3.8 40 253-292 16-55 (143)
193 2pg4_A Uncharacterized protein 71.9 8.4 0.00029 27.1 5.7 31 262-292 27-58 (95)
194 2kao_A Methionine-R-sulfoxide 71.9 3.1 0.0001 31.5 3.2 32 19-50 16-49 (124)
195 2k02_A Ferrous iron transport 71.6 2.7 9.4E-05 29.8 2.8 29 264-292 15-43 (87)
196 3cuo_A Uncharacterized HTH-typ 71.3 4.6 0.00016 28.4 4.1 30 263-292 36-65 (99)
197 3pvv_A Chromosomal replication 71.3 26 0.0009 25.3 9.4 74 207-294 4-79 (101)
198 1y0u_A Arsenical resistance op 70.9 5.8 0.0002 28.1 4.6 29 264-292 42-70 (96)
199 3bro_A Transcriptional regulat 70.9 15 0.00052 27.3 7.3 29 264-292 49-77 (141)
200 3la7_A Global nitrogen regulat 70.5 16 0.00055 30.2 8.1 29 264-292 192-220 (243)
201 2gau_A Transcriptional regulat 70.4 20 0.00067 29.2 8.5 29 264-292 179-207 (232)
202 1j1v_A Chromosomal replication 70.3 14 0.00048 26.4 6.5 42 154-197 36-77 (94)
203 3tgn_A ADC operon repressor AD 70.3 11 0.00036 28.4 6.4 27 266-292 52-78 (146)
204 3k2z_A LEXA repressor; winged 70.1 6.4 0.00022 32.1 5.2 32 261-292 20-51 (196)
205 3qp6_A CVIR transcriptional re 70.0 3.9 0.00013 35.2 4.1 32 264-295 211-242 (265)
206 3h0g_L DNA-directed RNA polyme 69.8 2.5 8.5E-05 28.1 2.1 27 4-33 22-48 (63)
207 2aus_D NOP10, ribosome biogene 69.8 1.4 4.8E-05 28.9 0.8 25 2-34 4-28 (60)
208 2fiy_A Protein FDHE homolog; F 69.6 3.5 0.00012 36.6 3.7 31 3-33 222-263 (309)
209 1yk4_A Rubredoxin, RD; electro 69.6 2 7E-05 27.3 1.6 12 24-35 3-14 (52)
210 2g2k_A EIF-5, eukaryotic trans 69.5 1.7 6E-05 34.9 1.5 29 4-32 97-128 (170)
211 2hr3_A Probable transcriptiona 69.4 20 0.00069 26.8 7.8 30 263-292 48-77 (147)
212 3lsg_A Two-component response 68.9 13 0.00046 26.4 6.3 36 254-289 8-43 (103)
213 3b73_A PHIH1 repressor-like pr 68.8 6.2 0.00021 29.3 4.4 28 265-292 27-56 (111)
214 3b02_A Transcriptional regulat 68.7 13 0.00044 29.6 6.8 29 264-292 138-166 (195)
215 2kko_A Possible transcriptiona 68.7 6.6 0.00023 28.6 4.6 29 264-292 37-65 (108)
216 2kv1_A Methionine-R-sulfoxide 68.6 3.5 0.00012 31.2 2.9 37 14-50 10-49 (124)
217 3dv8_A Transcriptional regulat 68.4 16 0.00053 29.5 7.4 29 264-292 168-196 (220)
218 2y75_A HTH-type transcriptiona 68.1 11 0.00036 28.3 5.8 41 152-193 12-52 (129)
219 4esj_A Type-2 restriction enzy 67.6 2.5 8.6E-05 35.7 2.1 29 4-33 35-66 (257)
220 2hzt_A Putative HTH-type trans 67.2 9.8 0.00033 27.5 5.2 30 263-292 25-55 (107)
221 1d0q_A DNA primase; zinc-bindi 67.2 4.2 0.00014 29.7 3.1 28 4-31 38-66 (103)
222 1vzi_A Desulfoferrodoxin; ferr 67.2 2.9 0.0001 31.9 2.3 29 3-34 7-35 (126)
223 2fmy_A COOA, carbon monoxide o 67.1 14 0.00048 29.9 6.9 29 264-292 166-194 (220)
224 1twf_I B12.6, DNA-directed RNA 66.9 5.3 0.00018 30.2 3.7 30 4-33 73-110 (122)
225 1sfx_A Conserved hypothetical 66.8 6.6 0.00022 27.8 4.2 29 264-292 33-61 (109)
226 3t8r_A Staphylococcus aureus C 66.6 5.6 0.00019 30.8 4.0 44 150-194 12-55 (143)
227 2l0k_A Stage III sporulation p 66.4 3.6 0.00012 29.5 2.6 23 266-288 21-43 (93)
228 1r1u_A CZRA, repressor protein 66.3 7.3 0.00025 28.1 4.4 29 264-292 38-66 (106)
229 2k9s_A Arabinose operon regula 66.3 9.8 0.00034 27.3 5.1 38 252-289 7-44 (107)
230 2elh_A CG11849-PA, LD40883P; s 66.3 4.7 0.00016 28.2 3.2 27 266-292 39-65 (87)
231 4ich_A Transcriptional regulat 66.0 2.9 9.8E-05 36.5 2.4 107 165-288 42-163 (311)
232 1neq_A DNA-binding protein NER 65.9 6.2 0.00021 26.8 3.6 24 263-286 20-43 (74)
233 1zx4_A P1 PARB, plasmid partit 65.6 5.2 0.00018 32.8 3.7 35 264-298 23-59 (192)
234 1uly_A Hypothetical protein PH 65.5 8.3 0.00028 31.5 5.0 29 264-292 32-60 (192)
235 3df8_A Possible HXLR family tr 65.4 10 0.00034 27.8 5.0 29 264-292 39-70 (111)
236 3d0s_A Transcriptional regulat 65.3 23 0.00079 28.6 7.9 29 264-292 176-204 (227)
237 3mao_A Methionine-R-sulfoxide 65.3 2.7 9.3E-05 30.9 1.7 31 19-49 9-41 (105)
238 2fiy_A Protein FDHE homolog; F 65.3 3.6 0.00012 36.4 2.9 30 3-32 182-217 (309)
239 3clo_A Transcriptional regulat 65.1 5.6 0.00019 33.9 4.1 32 264-295 211-242 (258)
240 4e2x_A TCAB9; kijanose, tetron 65.1 2.1 7.3E-05 39.2 1.4 15 24-38 54-68 (416)
241 3fmy_A HTH-type transcriptiona 65.0 4.2 0.00014 27.3 2.6 23 264-286 23-45 (73)
242 1pdn_C Protein (PRD paired); p 64.8 6.5 0.00022 28.8 4.0 28 265-292 33-60 (128)
243 1rzs_A Antirepressor, regulato 64.6 4.2 0.00014 26.4 2.4 20 266-285 11-30 (61)
244 3oou_A LIN2118 protein; protei 64.4 15 0.0005 26.4 5.8 40 250-290 7-46 (108)
245 1ylf_A RRF2 family protein; st 64.0 8.3 0.00028 29.9 4.5 47 148-197 13-59 (149)
246 3cng_A Nudix hydrolase; struct 63.7 4.6 0.00016 32.6 3.1 28 3-32 3-34 (189)
247 1j9i_A GPNU1 DBD;, terminase s 63.0 2.3 7.7E-05 28.4 0.9 23 266-288 3-25 (68)
248 3mn2_A Probable ARAC family tr 62.8 15 0.00051 26.3 5.6 38 251-289 5-42 (108)
249 2xi8_A Putative transcription 62.8 5.3 0.00018 25.5 2.7 24 264-287 13-36 (66)
250 2x4h_A Hypothetical protein SS 62.7 21 0.00072 26.7 6.6 30 263-292 29-58 (139)
251 4gop_C Putative uncharacterize 62.3 4.6 0.00016 37.6 3.1 29 4-35 309-339 (444)
252 3e97_A Transcriptional regulat 62.2 10 0.00035 31.0 5.1 29 264-292 174-202 (231)
253 3ryp_A Catabolite gene activat 62.1 15 0.0005 29.4 5.9 29 264-292 166-194 (210)
254 3f6o_A Probable transcriptiona 62.0 7.2 0.00025 28.8 3.7 30 263-292 29-58 (118)
255 2kdx_A HYPA, hydrogenase/ureas 61.9 3.4 0.00012 31.0 1.8 21 14-34 64-84 (119)
256 2l1u_A MSRB2, methionine-R-sul 61.8 4 0.00014 31.7 2.2 32 19-50 33-66 (143)
257 1u5k_A Hypothetical protein; O 61.8 5.4 0.00018 33.8 3.3 28 4-31 151-178 (244)
258 2nnn_A Probable transcriptiona 61.7 26 0.00088 25.8 7.0 28 265-292 52-79 (140)
259 2f2e_A PA1607; transcription f 61.7 12 0.00041 28.8 5.1 29 264-292 36-64 (146)
260 2zcw_A TTHA1359, transcription 61.6 15 0.00051 29.3 5.9 29 264-292 145-173 (202)
261 1z4h_A TORI, TOR inhibition pr 61.6 6.3 0.00022 26.0 3.0 23 266-288 11-33 (66)
262 2jsc_A Transcriptional regulat 61.5 8.1 0.00028 28.6 3.9 29 264-292 33-61 (118)
263 3eco_A MEPR; mutlidrug efflux 61.5 23 0.00079 26.2 6.7 29 264-292 46-74 (139)
264 3omt_A Uncharacterized protein 61.4 5.7 0.00019 26.3 2.7 23 265-287 21-43 (73)
265 2k8d_A Peptide methionine sulf 61.3 4.1 0.00014 31.9 2.2 32 19-50 57-90 (151)
266 3dkw_A DNR protein; CRP-FNR, H 61.3 12 0.00041 30.3 5.4 29 264-292 177-205 (227)
267 1x3u_A Transcriptional regulat 61.2 33 0.0011 22.7 6.9 32 165-197 30-61 (79)
268 3kz3_A Repressor protein CI; f 61.1 5.7 0.00019 26.9 2.8 23 264-286 24-46 (80)
269 3fx3_A Cyclic nucleotide-bindi 61.0 24 0.00083 28.7 7.3 30 263-292 176-205 (237)
270 2oqg_A Possible transcriptiona 60.9 8.2 0.00028 27.9 3.8 29 264-292 33-61 (114)
271 1on2_A Transcriptional regulat 60.8 13 0.00044 28.1 5.1 29 264-292 21-49 (142)
272 2hin_A GP39, repressor protein 60.8 6.7 0.00023 26.6 3.0 21 267-287 12-32 (71)
273 1r1t_A Transcriptional repress 60.7 15 0.00051 27.4 5.3 28 264-291 58-85 (122)
274 2v7f_A RPS19, RPS19E SSU ribos 60.5 3.7 0.00013 32.3 1.8 28 265-292 67-108 (150)
275 3pvv_A Chromosomal replication 60.2 26 0.00091 25.3 6.4 70 111-197 9-80 (101)
276 3c7j_A Transcriptional regulat 60.2 7.6 0.00026 32.7 3.9 30 263-292 47-76 (237)
277 3lsg_A Two-component response 60.1 42 0.0014 23.6 8.1 37 153-190 6-42 (103)
278 2oz6_A Virulence factor regula 60.0 6.5 0.00022 31.5 3.4 29 264-292 163-191 (207)
279 3cxk_A Methionine-R-sulfoxide 59.9 4 0.00014 32.5 1.9 32 19-50 69-102 (164)
280 1r69_A Repressor protein CI; g 59.8 6.9 0.00023 25.2 2.9 23 264-286 13-35 (69)
281 3oio_A Transcriptional regulat 59.8 14 0.00049 26.7 5.0 27 263-289 21-47 (113)
282 3k69_A Putative transcription 59.7 14 0.00048 29.2 5.2 39 253-292 17-55 (162)
283 2r1j_L Repressor protein C2; p 59.7 7 0.00024 25.1 2.9 22 265-286 18-39 (68)
284 1ku9_A Hypothetical protein MJ 59.6 12 0.0004 28.2 4.7 30 263-292 39-68 (152)
285 3ic7_A Putative transcriptiona 59.6 1.6 5.5E-05 33.2 -0.4 30 263-292 32-62 (126)
286 3edp_A LIN2111 protein; APC883 59.6 8 0.00027 32.6 3.9 30 263-292 30-60 (236)
287 2zkr_2 60S ribosomal protein L 59.4 3.6 0.00012 29.6 1.4 24 3-31 16-39 (97)
288 1ug2_A 2610100B20RIK gene prod 59.3 21 0.00071 25.4 5.3 42 254-295 43-86 (95)
289 3e0o_A Peptide methionine sulf 59.3 4.3 0.00015 31.5 2.0 31 19-49 38-70 (144)
290 1zug_A Phage 434 CRO protein; 59.1 7.1 0.00024 25.3 2.9 23 264-286 15-37 (71)
291 3oou_A LIN2118 protein; protei 59.1 45 0.0015 23.7 7.7 38 151-190 7-44 (108)
292 2ao9_A Phage protein; structur 58.9 18 0.00063 28.4 5.6 23 265-287 48-70 (155)
293 2jn6_A Protein CGL2762, transp 58.9 8.6 0.00029 27.2 3.5 27 265-291 23-49 (97)
294 2lkp_A Transcriptional regulat 58.5 9.9 0.00034 27.9 3.9 30 265-295 45-74 (119)
295 1ft9_A Carbon monoxide oxidati 58.4 8.5 0.00029 31.3 3.9 29 264-292 162-190 (222)
296 2k9s_A Arabinose operon regula 58.3 42 0.0014 23.8 7.4 38 152-190 6-43 (107)
297 4a5n_A Uncharacterized HTH-typ 58.2 18 0.00061 27.5 5.4 30 263-292 37-67 (131)
298 3t76_A VANU, transcriptional r 58.1 6.7 0.00023 27.6 2.7 24 264-287 36-59 (88)
299 2bgc_A PRFA; bacterial infecti 58.1 38 0.0013 27.7 8.0 30 263-292 166-197 (238)
300 2zkz_A Transcriptional repress 58.0 6.4 0.00022 28.1 2.7 29 264-292 40-68 (99)
301 3bpv_A Transcriptional regulat 58.0 13 0.00045 27.5 4.7 30 263-292 41-70 (138)
302 2a6c_A Helix-turn-helix motif; 57.9 26 0.00088 23.7 5.8 25 263-287 29-53 (83)
303 3hcg_A Peptide methionine sulf 57.7 4.4 0.00015 31.6 1.7 31 19-49 39-71 (146)
304 1ug2_A 2610100B20RIK gene prod 57.7 35 0.0012 24.2 6.2 42 156-197 44-86 (95)
305 3kcc_A Catabolite gene activat 57.7 26 0.00088 29.4 7.0 28 265-292 217-244 (260)
306 3hsr_A HTH-type transcriptiona 57.6 6.2 0.00021 29.8 2.7 30 263-292 48-77 (140)
307 4ev0_A Transcription regulator 57.5 7.6 0.00026 31.3 3.4 29 264-292 162-190 (216)
308 2k9q_A Uncharacterized protein 57.3 7.8 0.00027 25.9 2.9 22 265-286 15-36 (77)
309 3fm5_A Transcriptional regulat 57.3 24 0.00084 26.6 6.2 31 262-292 51-81 (150)
310 4hc9_A Trans-acting T-cell-spe 57.2 3.1 0.00011 31.2 0.8 32 3-34 5-37 (115)
311 2jmo_A Parkin; IBR, E3 ligase, 57.1 6.7 0.00023 27.1 2.5 30 2-33 24-60 (80)
312 2wv0_A YVOA, HTH-type transcri 57.1 9.1 0.00031 32.3 3.9 30 263-292 31-61 (243)
313 2jpc_A SSRB; DNA binding prote 57.0 14 0.00047 23.3 4.0 31 166-197 13-43 (61)
314 1qbj_A Protein (double-strande 56.9 27 0.00093 24.1 5.7 29 165-194 26-54 (81)
315 2qvo_A Uncharacterized protein 56.8 8.9 0.0003 27.0 3.3 29 264-292 29-57 (95)
316 3p2a_A Thioredoxin 2, putative 56.8 3.7 0.00013 31.3 1.3 33 4-36 6-38 (148)
317 3f8m_A GNTR-family protein tra 56.8 9.3 0.00032 32.4 3.9 30 263-292 33-63 (248)
318 3hcj_A MSRB, peptide methionin 56.7 4 0.00014 32.1 1.4 32 18-49 45-78 (154)
319 2zcm_A Biofilm operon icaabcd 56.5 18 0.00061 28.3 5.5 42 245-287 7-49 (192)
320 3bwg_A Uncharacterized HTH-typ 56.5 9.5 0.00033 32.1 3.9 30 263-292 26-56 (239)
321 3deu_A Transcriptional regulat 56.5 22 0.00075 27.7 5.9 31 262-292 65-95 (166)
322 2a61_A Transcriptional regulat 56.5 20 0.00068 26.7 5.5 29 264-292 46-74 (145)
323 2gxg_A 146AA long hypothetical 56.5 34 0.0011 25.4 6.9 30 263-292 48-77 (146)
324 1qgp_A Protein (double strande 56.4 21 0.00071 24.3 5.0 35 159-194 22-58 (77)
325 2dk5_A DNA-directed RNA polyme 56.4 17 0.00058 25.7 4.7 30 263-292 34-63 (91)
326 2bv6_A MGRA, HTH-type transcri 56.3 7.1 0.00024 29.4 2.8 29 264-292 50-78 (142)
327 1hw1_A FADR, fatty acid metabo 56.2 9.5 0.00032 31.8 3.9 30 263-292 28-58 (239)
328 1ub9_A Hypothetical protein PH 56.1 7.7 0.00026 27.2 2.9 28 265-292 30-57 (100)
329 3b7h_A Prophage LP1 protein 11 56.1 8.4 0.00029 25.6 2.9 24 264-287 19-42 (78)
330 3bvo_A CO-chaperone protein HS 56.0 5.4 0.00018 33.1 2.2 28 4-34 11-38 (207)
331 2fu4_A Ferric uptake regulatio 55.9 17 0.00058 24.7 4.5 29 264-292 32-65 (83)
332 1k78_A Paired box protein PAX5 55.9 13 0.00044 28.5 4.3 28 265-292 48-75 (149)
333 1adr_A P22 C2 repressor; trans 55.8 8.6 0.00029 25.3 2.9 23 265-287 18-40 (76)
334 3ech_A MEXR, multidrug resista 55.7 31 0.0011 25.6 6.6 28 265-292 51-78 (142)
335 2l1p_A DNA-binding protein SAT 55.7 8.4 0.00029 26.9 2.7 23 265-287 32-54 (83)
336 2b5a_A C.BCLI; helix-turn-heli 55.5 8.7 0.0003 25.4 2.9 23 264-286 22-44 (77)
337 1u2w_A CADC repressor, cadmium 55.4 13 0.00045 27.5 4.2 30 263-292 54-83 (122)
338 3qq6_A HTH-type transcriptiona 55.4 8.7 0.0003 25.9 2.9 25 264-288 22-46 (78)
339 3g3z_A NMB1585, transcriptiona 55.4 51 0.0018 24.4 7.8 28 265-292 45-72 (145)
340 1y7y_A C.AHDI; helix-turn-heli 55.3 8.9 0.0003 25.1 2.9 23 264-286 25-47 (74)
341 1zs4_A Regulatory protein CII; 55.3 7.4 0.00025 27.3 2.4 26 266-291 25-50 (83)
342 2hku_A A putative transcriptio 55.2 14 0.00049 29.5 4.8 41 246-287 21-61 (215)
343 3bs3_A Putative DNA-binding pr 55.0 8.3 0.00028 25.4 2.7 24 264-287 22-45 (76)
344 2rdp_A Putative transcriptiona 54.7 39 0.0013 25.2 7.0 28 265-292 56-83 (150)
345 1tty_A Sigma-A, RNA polymerase 54.7 20 0.00069 24.7 4.8 32 165-197 37-68 (87)
346 2cw1_A SN4M; lambda CRO fold, 54.6 10 0.00035 25.1 3.0 22 267-288 15-36 (65)
347 2p7v_B Sigma-70, RNA polymeras 54.5 17 0.00058 23.6 4.2 32 165-197 24-55 (68)
348 1z7u_A Hypothetical protein EF 54.5 15 0.00052 26.7 4.3 29 264-292 34-63 (112)
349 2glo_A Brinker CG9653-PA; prot 54.5 9.7 0.00033 24.2 2.9 24 268-291 28-51 (59)
350 2q1z_A RPOE, ECF SIGE; ECF sig 54.4 3 0.0001 33.1 0.4 31 265-295 151-181 (184)
351 3iwz_A CAP-like, catabolite ac 54.3 9 0.00031 31.2 3.4 29 264-292 186-214 (230)
352 3eet_A Putative GNTR-family tr 54.1 11 0.00036 32.6 3.9 30 263-292 50-80 (272)
353 3bd1_A CRO protein; transcript 54.0 9.7 0.00033 25.6 3.0 21 267-287 13-33 (79)
354 3f6w_A XRE-family like protein 53.8 9.5 0.00032 25.8 2.9 23 265-287 27-49 (83)
355 3s8q_A R-M controller protein; 53.8 9.5 0.00032 25.7 2.9 23 264-286 23-45 (82)
356 2kpj_A SOS-response transcript 53.7 13 0.00046 25.8 3.8 24 263-286 20-43 (94)
357 4ghj_A Probable transcriptiona 53.7 9.2 0.00032 27.7 2.9 22 264-285 48-69 (101)
358 2fnf_X Putative RAS effector N 53.7 9.5 0.00033 25.8 2.8 28 3-36 35-62 (72)
359 2fbh_A Transcriptional regulat 53.7 18 0.00063 26.9 4.9 31 262-292 49-79 (146)
360 3sxy_A Transcriptional regulat 53.7 9.1 0.00031 31.5 3.3 30 263-292 33-62 (218)
361 3vp5_A Transcriptional regulat 53.7 8.5 0.00029 30.4 3.0 43 248-291 15-58 (189)
362 3q87_A Putative uncharacterize 53.6 2.6 8.8E-05 32.1 -0.2 16 18-33 94-109 (125)
363 2a6h_F RNA polymerase sigma fa 53.5 1.3E+02 0.0046 27.4 14.1 31 264-294 379-409 (423)
364 3eus_A DNA-binding protein; st 53.5 9.6 0.00033 26.2 2.9 23 264-286 26-48 (86)
365 3mkl_A HTH-type transcriptiona 53.4 22 0.00075 26.1 5.1 38 250-288 9-46 (120)
366 2eth_A Transcriptional regulat 53.4 19 0.00065 27.4 5.0 28 265-292 58-85 (154)
367 1u78_A TC3 transposase, transp 53.3 20 0.00069 26.7 5.0 25 265-289 77-103 (141)
368 1zug_A Phage 434 CRO protein; 53.3 21 0.0007 22.9 4.5 46 164-226 14-59 (71)
369 3hrs_A Metalloregulator SCAR; 53.2 12 0.00041 31.0 3.9 30 263-292 18-47 (214)
370 4hc9_A Trans-acting T-cell-spe 52.8 4.6 0.00016 30.2 1.1 10 23-32 59-68 (115)
371 1ku3_A Sigma factor SIGA; heli 52.7 25 0.00085 23.2 4.9 31 165-196 29-59 (73)
372 3ihu_A Transcriptional regulat 52.7 9.6 0.00033 31.5 3.3 30 263-292 37-66 (222)
373 1zyb_A Transcription regulator 52.6 10 0.00034 31.3 3.4 29 264-292 185-213 (232)
374 4ayb_P DNA-directed RNA polyme 52.6 7.9 0.00027 23.9 1.9 33 1-33 1-33 (48)
375 1xwr_A Regulatory protein CII; 52.5 8.2 0.00028 27.9 2.4 26 266-291 24-49 (97)
376 2riq_A Poly [ADP-ribose] polym 52.4 8.4 0.00029 30.6 2.6 23 4-32 79-101 (160)
377 1fse_A GERE; helix-turn-helix 52.3 33 0.0011 22.2 5.5 31 166-197 26-56 (74)
378 2wiu_B HTH-type transcriptiona 52.3 12 0.0004 25.5 3.2 24 264-287 24-47 (88)
379 1rfh_A RAS association (ralgds 52.2 10 0.00034 24.5 2.6 27 3-35 22-48 (59)
380 2ef8_A C.ECOT38IS, putative tr 52.2 10 0.00036 25.5 2.9 23 264-286 22-44 (84)
381 3e6c_C CPRK, cyclic nucleotide 52.0 49 0.0017 27.2 7.8 48 146-194 147-204 (250)
382 2ewt_A BLDD, putative DNA-bind 51.8 13 0.00044 24.1 3.3 24 264-287 20-45 (71)
383 2fsw_A PG_0823 protein; alpha- 51.4 19 0.00065 25.9 4.4 30 263-292 36-66 (107)
384 3qkx_A Uncharacterized HTH-typ 51.3 10 0.00034 29.4 3.1 38 250-288 13-51 (188)
385 2pex_A Transcriptional regulat 51.1 31 0.0011 26.0 5.9 30 263-292 59-88 (153)
386 2ict_A Antitoxin HIGA; helix-t 51.1 12 0.00043 26.0 3.2 23 265-287 21-43 (94)
387 2lk0_A RNA-binding protein 5; 51.1 6.7 0.00023 22.1 1.4 13 20-32 2-14 (32)
388 3mky_B Protein SOPB; partition 51.1 18 0.00063 29.4 4.5 32 256-287 33-64 (189)
389 1z91_A Organic hydroperoxide r 51.0 15 0.00052 27.5 4.0 28 265-292 54-81 (147)
390 1je8_A Nitrate/nitrite respons 50.7 32 0.0011 23.4 5.3 32 165-197 35-66 (82)
391 2ppx_A AGR_C_3184P, uncharacte 50.7 11 0.00037 26.7 2.9 23 264-286 42-64 (99)
392 3bqz_B HTH-type transcriptiona 50.6 13 0.00043 29.0 3.6 38 250-288 7-45 (194)
393 1u78_A TC3 transposase, transp 50.5 14 0.00046 27.7 3.6 27 265-291 22-48 (141)
394 2hs5_A Putative transcriptiona 50.4 11 0.00037 31.7 3.3 30 263-292 49-78 (239)
395 3bdd_A Regulatory protein MARR 50.4 17 0.00058 27.0 4.1 28 265-292 45-72 (142)
396 1bl0_A Protein (multiple antib 50.2 30 0.001 25.7 5.5 39 250-289 13-51 (129)
397 1jgs_A Multiple antibiotic res 50.1 51 0.0017 24.1 6.9 29 264-292 47-75 (138)
398 2fa5_A Transcriptional regulat 50.1 22 0.00076 27.1 4.9 30 263-292 61-90 (162)
399 3nqo_A MARR-family transcripti 50.0 46 0.0016 26.4 7.0 30 263-292 55-84 (189)
400 3bj6_A Transcriptional regulat 50.0 18 0.00063 27.3 4.3 28 265-292 54-81 (152)
401 3r0a_A Putative transcriptiona 49.9 24 0.00081 26.2 4.8 37 156-193 31-68 (123)
402 2htj_A P fimbrial regulatory p 49.8 42 0.0014 22.6 5.8 29 165-194 13-41 (81)
403 1ovx_A ATP-dependent CLP prote 49.6 6.6 0.00023 26.3 1.4 29 2-32 17-49 (67)
404 2frh_A SARA, staphylococcal ac 49.5 41 0.0014 24.7 6.2 29 264-292 52-80 (127)
405 3u2r_A Regulatory protein MARR 49.5 36 0.0012 26.2 6.2 30 263-292 60-89 (168)
406 1x57_A Endothelial differentia 49.2 20 0.0007 24.6 4.1 25 263-287 24-48 (91)
407 2wus_R RODZ, putative uncharac 49.2 52 0.0018 24.0 6.5 53 162-227 16-71 (112)
408 3ulq_B Transcriptional regulat 49.1 25 0.00085 24.6 4.6 31 166-197 44-74 (90)
409 1yyv_A Putative transcriptiona 48.9 19 0.00066 27.2 4.2 30 263-292 46-76 (131)
410 3k69_A Putative transcription 48.9 15 0.00052 28.9 3.7 43 150-194 13-55 (162)
411 3f6v_A Possible transcriptiona 48.9 15 0.00051 28.6 3.6 30 263-292 69-98 (151)
412 3oop_A LIN2960 protein; protei 48.8 64 0.0022 23.8 7.3 29 264-292 50-78 (143)
413 3knw_A Putative transcriptiona 48.8 12 0.00042 29.6 3.3 40 248-288 17-57 (212)
414 3p8b_A DNA-directed RNA polyme 48.8 4.6 0.00016 28.1 0.5 23 1-31 21-43 (81)
415 3ppb_A Putative TETR family tr 48.7 12 0.00041 29.1 3.2 40 248-288 12-52 (195)
416 3f1b_A TETR-like transcription 48.7 12 0.00043 29.3 3.3 38 250-288 19-57 (203)
417 1lmb_3 Protein (lambda repress 48.5 13 0.00043 25.7 2.9 23 265-287 30-52 (92)
418 1tbx_A ORF F-93, hypothetical 48.3 21 0.00072 25.0 4.2 30 263-292 20-53 (99)
419 1jhf_A LEXA repressor; LEXA SO 48.2 25 0.00084 28.4 5.1 32 261-292 21-53 (202)
420 2h09_A Transcriptional regulat 48.2 19 0.00066 27.6 4.2 29 264-292 53-81 (155)
421 2q24_A Putative TETR family tr 47.8 19 0.00066 28.2 4.3 39 248-287 18-56 (194)
422 2vn2_A DNAD, chromosome replic 47.8 53 0.0018 24.5 6.6 27 266-292 52-78 (128)
423 1xd7_A YWNA; structural genomi 47.7 24 0.00082 27.0 4.7 43 147-193 7-49 (145)
424 3jw4_A Transcriptional regulat 47.7 19 0.00066 27.1 4.1 29 264-292 56-84 (148)
425 1xd7_A YWNA; structural genomi 47.5 32 0.0011 26.3 5.4 37 253-292 14-50 (145)
426 1uxc_A FRUR (1-57), fructose r 47.5 19 0.00064 23.7 3.4 21 167-188 1-21 (65)
427 3cdh_A Transcriptional regulat 47.5 25 0.00086 26.6 4.8 29 264-292 56-84 (155)
428 3cjn_A Transcriptional regulat 47.5 18 0.00063 27.7 4.0 29 264-292 65-93 (162)
429 2p8t_A Hypothetical protein PH 47.5 21 0.00072 29.4 4.4 30 263-292 28-57 (200)
430 3lcz_A YCZA, inhibitor of trap 47.5 8.1 0.00028 24.6 1.5 21 4-30 10-30 (53)
431 2qtq_A Transcriptional regulat 47.5 18 0.00061 28.6 4.1 41 248-289 19-60 (213)
432 2k1p_A Zinc finger RAN-binding 47.4 7.6 0.00026 22.0 1.2 13 20-32 3-15 (33)
433 2ds5_A CLPX, ATP-dependent CLP 47.4 7.7 0.00026 24.5 1.4 27 2-30 10-40 (51)
434 3lwj_A Putative TETR-family tr 47.1 14 0.00048 29.0 3.3 40 250-290 17-57 (202)
435 3o9x_A Uncharacterized HTH-typ 47.1 11 0.00038 28.3 2.6 21 265-285 84-104 (133)
436 1bia_A BIRA bifunctional prote 47.0 22 0.00076 31.3 4.9 30 263-292 17-46 (321)
437 1xmk_A Double-stranded RNA-spe 46.9 26 0.00089 24.1 4.2 28 265-292 25-53 (79)
438 3kp7_A Transcriptional regulat 46.8 17 0.00058 27.5 3.7 31 262-292 48-78 (151)
439 2pij_A Prophage PFL 6 CRO; tra 46.7 29 0.00098 22.2 4.4 21 267-287 15-35 (67)
440 4b8x_A SCO5413, possible MARR- 46.5 34 0.0012 26.0 5.4 30 263-292 49-78 (147)
441 2l8n_A Transcriptional repress 46.3 12 0.00041 24.9 2.3 47 164-225 7-55 (67)
442 2con_A RUH-035 protein, NIN on 46.1 8.7 0.0003 26.6 1.6 14 1-15 28-41 (79)
443 1t6s_A Conserved hypothetical 46.1 31 0.0011 27.3 5.1 41 249-293 10-52 (162)
444 3lhq_A Acrab operon repressor 46.1 14 0.00049 29.2 3.3 40 249-289 18-58 (220)
445 2o8x_A Probable RNA polymerase 46.0 34 0.0012 21.9 4.7 30 166-196 31-60 (70)
446 2di3_A Bacterial regulatory pr 45.8 18 0.00061 30.2 3.9 30 263-292 25-55 (239)
447 3k2z_A LEXA repressor; winged 45.7 38 0.0013 27.2 5.9 37 156-193 14-50 (196)
448 3bja_A Transcriptional regulat 45.7 16 0.00054 27.1 3.3 29 264-292 46-74 (139)
449 3dcf_A Transcriptional regulat 45.6 14 0.00048 29.3 3.2 40 248-288 34-74 (218)
450 3eus_A DNA-binding protein; st 45.4 68 0.0023 21.7 7.1 51 163-229 24-74 (86)
451 1lj9_A Transcriptional regulat 45.3 21 0.00073 26.6 4.0 29 264-292 42-70 (144)
452 2nyx_A Probable transcriptiona 45.3 37 0.0013 26.2 5.6 28 265-292 59-86 (168)
453 3g5g_A Regulatory protein; tra 45.2 15 0.00051 26.2 2.9 23 264-286 40-62 (99)
454 3a43_A HYPD, hydrogenase nicke 45.2 6 0.0002 30.6 0.7 22 14-35 61-82 (139)
455 2v57_A TETR family transcripti 45.2 9.4 0.00032 29.8 2.0 38 249-288 18-55 (190)
456 1pb6_A Hypothetical transcript 45.2 16 0.00055 28.9 3.4 39 249-288 22-61 (212)
457 2fbi_A Probable transcriptiona 45.1 17 0.00057 27.0 3.4 28 265-292 50-77 (142)
458 2gqq_A Leucine-responsive regu 45.1 2.9 0.0001 33.0 -1.1 31 262-292 24-54 (163)
459 3c57_A Two component transcrip 45.1 30 0.001 24.3 4.5 30 167-197 43-72 (95)
460 3op9_A PLI0006 protein; struct 45.0 17 0.00058 26.3 3.3 23 265-287 22-44 (114)
461 1a04_A Nitrate/nitrite respons 44.7 23 0.00079 28.4 4.4 30 266-295 170-199 (215)
462 3dew_A Transcriptional regulat 44.7 15 0.0005 28.8 3.1 44 248-292 11-55 (206)
463 2l49_A C protein; P2 bacteriop 44.6 15 0.00053 25.6 2.9 23 264-286 16-38 (99)
464 4aik_A Transcriptional regulat 44.6 41 0.0014 25.7 5.7 31 262-292 43-73 (151)
465 3bni_A Putative TETR-family tr 44.5 16 0.00054 29.8 3.3 41 249-290 47-88 (229)
466 2g7s_A Transcriptional regulat 44.4 12 0.00039 29.2 2.4 38 250-288 13-51 (194)
467 3k0l_A Repressor protein; heli 44.4 30 0.001 26.5 4.9 29 264-292 59-87 (162)
468 3la7_A Global nitrogen regulat 44.4 52 0.0018 27.0 6.7 30 164-194 191-220 (243)
469 4hbl_A Transcriptional regulat 44.2 23 0.00078 26.8 4.0 29 264-292 54-82 (149)
470 2qww_A Transcriptional regulat 44.1 22 0.00077 26.8 4.0 29 264-292 54-82 (154)
471 3hug_A RNA polymerase sigma fa 44.1 32 0.0011 23.8 4.6 29 167-196 54-82 (92)
472 1z6r_A MLC protein; transcript 44.0 25 0.00087 31.8 5.0 31 262-292 27-57 (406)
473 2pg4_A Uncharacterized protein 44.0 35 0.0012 23.7 4.8 33 161-194 25-58 (95)
474 2rae_A Transcriptional regulat 43.8 23 0.00077 27.9 4.1 44 247-291 19-63 (207)
475 4fx0_A Probable transcriptiona 43.5 69 0.0024 24.2 6.8 29 264-292 51-79 (148)
476 2jml_A DNA binding domain/tran 43.4 14 0.00049 25.2 2.5 21 265-285 5-25 (81)
477 2au3_A DNA primase; zinc ribbo 43.4 14 0.00049 33.8 3.1 27 5-31 36-63 (407)
478 3s2w_A Transcriptional regulat 43.4 23 0.0008 27.0 4.0 29 264-292 63-91 (159)
479 3kz9_A SMCR; transcriptional r 43.2 15 0.00051 28.8 2.9 38 250-288 22-60 (206)
480 2xi8_A Putative transcription 43.2 57 0.002 20.2 6.6 46 165-226 13-58 (66)
481 3dv8_A Transcriptional regulat 42.9 62 0.0021 25.7 6.8 47 147-194 147-196 (220)
482 1kbe_A Kinase suppressor of RA 42.8 12 0.00041 23.3 1.7 24 4-34 15-38 (49)
483 1bl0_A Protein (multiple antib 42.7 82 0.0028 23.1 7.0 40 149-190 11-50 (129)
484 1sgm_A Putative HTH-type trans 42.6 17 0.00059 28.1 3.2 43 248-291 9-53 (191)
485 3rd3_A Probable transcriptiona 42.6 30 0.001 26.7 4.7 40 247-287 12-52 (197)
486 2rn7_A IS629 ORFA; helix, all 42.5 16 0.00055 26.2 2.8 27 266-292 31-57 (108)
487 1p2f_A Response regulator; DRR 42.5 26 0.0009 28.1 4.4 36 260-295 159-197 (220)
488 3j21_e 50S ribosomal protein L 42.4 10 0.00035 24.8 1.4 24 3-31 17-40 (62)
489 3trb_A Virulence-associated pr 42.3 16 0.00055 26.4 2.7 26 262-287 24-49 (104)
490 3c3w_A Two component transcrip 42.0 24 0.00081 28.8 4.1 30 266-295 165-194 (225)
491 3boq_A Transcriptional regulat 41.9 22 0.00077 27.0 3.7 31 262-292 59-89 (160)
492 3vk0_A NHTF, transcriptional r 41.9 18 0.0006 26.3 2.9 22 264-285 33-54 (114)
493 3cec_A Putative antidote prote 41.8 17 0.00057 25.8 2.7 22 265-286 31-52 (104)
494 1b0n_A Protein (SINR protein); 41.8 18 0.00061 25.8 2.9 25 264-288 13-37 (111)
495 3kkc_A TETR family transcripti 41.7 17 0.00059 27.8 3.0 38 250-288 17-55 (177)
496 2d6y_A Putative TETR family re 41.7 33 0.0011 27.1 4.8 38 249-287 12-50 (202)
497 1vq8_1 50S ribosomal protein L 41.4 11 0.00038 24.2 1.4 24 3-31 17-40 (57)
498 2j6a_A Protein TRM112; transla 41.4 5.3 0.00018 31.0 -0.1 18 16-33 102-119 (141)
499 2f9i_B Acetyl-coenzyme A carbo 41.3 5.5 0.00019 34.8 -0.0 25 4-31 31-57 (285)
500 2fmy_A COOA, carbon monoxide o 41.3 52 0.0018 26.3 6.1 29 165-194 166-194 (220)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=9.9e-77 Score=546.87 Aligned_cols=307 Identities=34% Similarity=0.533 Sum_probs=174.4
Q ss_pred CCCCCCCCC-CCceeeeCCCCceEcCCCcccccCcccccccccccccCCC-CCCCCCccCCCCCCcccCCCcceEEecCC
Q 021438 3 DSYCADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80 (312)
Q Consensus 3 ~~~Cp~Cg~-~~~ii~D~~~G~~vC~~CG~Vv~e~~id~~~ewr~f~~~~-~~~~~~r~G~~~~~~~~~~~~~t~i~~~~ 80 (312)
...||+||+ .+++++|+.+|++||++||+|++|++||+|||||+|++|+ ++.|++|+|+|.|+++||+|++|.|+++.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~ 100 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCS
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCC
Confidence 458999997 4589999999999999999999999999999999999775 36889999999999999999999999765
Q ss_pred CCCCcccccccchhcccc--CCcchhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Q 021438 81 AGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYI 158 (312)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~--~~~~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~ 158 (312)
++++. .+..|++||++ .+++|++|.+|+..|+++|++|+||+.+.++|..||+++++.++++||+.+.++|||||+
T Consensus 101 -~~~~~-~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYi 178 (345)
T 4bbr_M 101 -TTDMR-FTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILI 178 (345)
T ss_dssp -SCCHH-HHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHH
T ss_pred -Ccchh-hHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHH
Confidence 33311 23458899987 578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcc------ccccCCCCHHHHHHHHHhhcCCCHHHHHHHH
Q 021438 159 ACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQ------SVEMGTIHASDYLRRFCSNLGMTNQAVKAAQ 232 (312)
Q Consensus 159 acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~------~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~ 232 (312)
|||+++.|+|++||++++ ++++++|+++|+.|.+.|++.... ++.+++.+|++||+|||++|+|++++.+.|+
T Consensus 179 ACR~~~~prtl~eI~~~~-~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~ 257 (345)
T 4bbr_M 179 GCRRAEVARTFKEIQSLI-HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257 (345)
T ss_dssp HHHHTCCBCCHHHHHHHH-TCCTTHHHHHHHHHHHCC-------------------------------------------
T ss_pred HHHhcCCCccHHHHHHHh-CCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999999999999999 799999999999999999974211 1236788999999999999999999999999
Q ss_pred HHHHHhhh--ccCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccCCccc-cc-ccccc
Q 021438 233 EAVQKSED--LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWF-AN-EEDIK 308 (312)
Q Consensus 233 ~i~~~~~~--l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~p~~~-~~-~~~~~ 308 (312)
+|++.+.+ +..||+|.+|||||||+|++++|.++|++|||+++|||++|||++||||+++++.|+|+|| .+ .++++
T Consensus 258 ~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~~~~~~~~~~~~~~ 337 (345)
T 4bbr_M 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLD 337 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCHHHhhcccCchh
Confidence 99999998 8899999999999999999999999999999999999999999999999999999996665 43 48999
Q ss_pred ccCC
Q 021438 309 NLKL 312 (312)
Q Consensus 309 ~l~~ 312 (312)
+||.
T Consensus 338 ~l~~ 341 (345)
T 4bbr_M 338 NLPG 341 (345)
T ss_dssp ----
T ss_pred hCCC
Confidence 9994
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-72 Score=521.13 Aligned_cols=306 Identities=33% Similarity=0.525 Sum_probs=163.6
Q ss_pred CCCCCCCCCCC-ceeeeCCCCceEcCCCcccccCcccccccccccccCCC-CCCCCCccCCCCCCcccCCCcceEEecCC
Q 021438 3 DSYCADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80 (312)
Q Consensus 3 ~~~Cp~Cg~~~-~ii~D~~~G~~vC~~CG~Vv~e~~id~~~ewr~f~~~~-~~~~~~r~G~~~~~~~~~~~~~t~i~~~~ 80 (312)
.+.||+||+.+ ++++|+.+|++||++||+|++|++||+|||||+|++++ ++.|++|+|+|.+|++||.|++|.|+++.
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~ 100 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTT
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCC
Confidence 46899999832 79999999999999999999999999999999999764 36789999999999999999999999752
Q ss_pred -CCCCcccccccchhcccc--CCcchhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 021438 81 -AGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157 (312)
Q Consensus 81 -~~~~~~~~~~~l~~~~~~--~~~~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly 157 (312)
.+++| .+.|++||++ .+++|++|.+++.+|+++|+.|+||+.++++|..||+++++.+.++|++.+.++|||||
T Consensus 101 ~~~~~~---~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAcly 177 (345)
T 3k7a_M 101 TTDMRF---TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177 (345)
T ss_dssp SCCHHH---HHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTT
T ss_pred CCCchh---hhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH
Confidence 12222 2248899876 58899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhh------ccccccCCCCHHHHHHHHHhhcCCCHHHHHHH
Q 021438 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM------GQSVEMGTIHASDYLRRFCSNLGMTNQAVKAA 231 (312)
Q Consensus 158 ~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~------~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A 231 (312)
+|||++++|++++||+.++ +++.++|+++|+.|.+.|+... +..+.+++.+|+.||+|||+.|++++++.+.|
T Consensus 178 iAcR~e~~prtl~ei~~~~-~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A 256 (345)
T 3k7a_M 178 IGCRRAEVARTFKEIQSLI-HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256 (345)
T ss_dssp TTSBTTBSSCCHHHHHHSS-SCCSHHHHHHHHHHHHHHTCC---------------------------------------
T ss_pred HHHHHcCCCccHHHHHHHH-CCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999 6999999999999999998210 00136778999999999999999999999999
Q ss_pred HHHHHHhhh--ccCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccCCcccc-cc-ccc
Q 021438 232 QEAVQKSED--LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFA-NE-EDI 307 (312)
Q Consensus 232 ~~i~~~~~~--l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~p~~~~-~~-~~~ 307 (312)
++|++++.+ +..||+|.+|||||||||++++|.++|+++|++++||+++||+++||||++++..++|+||. ++ +++
T Consensus 257 ~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~~~l~~~~~~~~~~~~~ 336 (345)
T 3k7a_M 257 EYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSL 336 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCHHHhhcccCCH
Confidence 999999998 88999999999999999999999999999999999999999999999999999999977766 55 899
Q ss_pred cccCC
Q 021438 308 KNLKL 312 (312)
Q Consensus 308 ~~l~~ 312 (312)
++||.
T Consensus 337 ~~lp~ 341 (345)
T 3k7a_M 337 DNLPG 341 (345)
T ss_dssp -----
T ss_pred hhCCC
Confidence 99994
No 3
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=9.5e-45 Score=312.80 Aligned_cols=204 Identities=43% Similarity=0.713 Sum_probs=198.2
Q ss_pred chhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCH
Q 021438 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181 (312)
Q Consensus 102 ~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~ 181 (312)
+||++.+++++|+++|.+|+||+.++++|..+|+++++.+.++|++++.++|||+|+|||.++.|++++||+.++ +++.
T Consensus 1 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~-~~~~ 79 (207)
T 1c9b_A 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVS-RISK 79 (207)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTS-SSCH
T ss_pred CchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHH-CCCH
Confidence 488999999999999999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHHH
Q 021438 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVIYIIT 259 (312)
Q Consensus 182 ~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla~ 259 (312)
++|+++|+.|.+.|++ ++++.+|+.|+.||++.|++++++.+.|+.+++.+.+ +..|++|.+|||||||+|+
T Consensus 80 ~~i~~~~~~ll~~L~~------~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~ 153 (207)
T 1c9b_A 80 KEIGRCFKLILKALET------SVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMAS 153 (207)
T ss_dssp HHHHHHHHHHHHHTTC------CCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC------CcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHH
Confidence 9999999999999997 7888999999999999999999999999999999987 8899999999999999999
Q ss_pred HhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccCCccccccccccccCC
Q 021438 260 QLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDWFANEEDIKNLKL 312 (312)
Q Consensus 260 ~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~p~~~~~~~~~~~l~~ 312 (312)
+++|.++++++|++++||++.||+++|++|.+.++.++|+||.+++++++||.
T Consensus 154 ~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~~~~~~~~~~l~~ 206 (207)
T 1c9b_A 154 QASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLPQ 206 (207)
T ss_dssp HTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSSCCCSSCSTTSCC
T ss_pred HHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhChHHHcccCCHhhCCC
Confidence 99999999999999999999999999999999999999999999999999994
No 4
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=3.1e-43 Score=301.78 Aligned_cols=192 Identities=31% Similarity=0.588 Sum_probs=181.4
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCC
Q 021438 100 SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179 (312)
Q Consensus 100 ~~~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v 179 (312)
+++|+++.+++++|.++|++|+||+.+.++|..+|+++++.+.++|++++.++|||||+|||+++.|++++||++++ ++
T Consensus 3 ~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~-~v 81 (200)
T 1ais_B 3 DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIA-RV 81 (200)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHT-TS
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHH-CC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999 79
Q ss_pred CHHHHHHHHHHHHHHHhhhhccccccCC--CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHH
Q 021438 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGT--IHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVI 255 (312)
Q Consensus 180 ~~~~i~~~~~~l~~~l~~~~~~~~~~~~--~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAai 255 (312)
+.++|+++|+.|.+.|++ ++++ .+|+.||.||++.|++++++.+.|++|++++.+ +..||+|.+||||||
T Consensus 82 ~~~~i~~~~~~l~~~L~~------~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAal 155 (200)
T 1ais_B 82 DKKEIGRSYRFIARNLNL------TPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAAL 155 (200)
T ss_dssp CHHHHHHHHHHHHHHTTC------CTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcc------cCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHH
Confidence 999999999999999997 6777 899999999999999999999999999999997 889999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccCC
Q 021438 256 YIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIP 298 (312)
Q Consensus 256 yla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~p 298 (312)
|+|++++|.++|+++|+.++||++.||+++|++|.+.++..+|
T Consensus 156 y~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 156 YIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999986654
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.94 E-value=4.1e-26 Score=199.95 Aligned_cols=182 Identities=20% Similarity=0.266 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhc-------
Q 021438 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRG-RNQEAIVAACLYIACRQENKPRTVKEFCSVAN------- 177 (312)
Q Consensus 106 l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~g-r~~~~iaaAcly~acr~~~~p~tl~dia~~~~------- 177 (312)
...+.++|.+++.+|+||+.+..+|..+|++++..+.+++ +++..+++||+|+|||.++.|++++||+.+++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence 5678999999999999999999999999999999988888 99999999999999999999999999998763
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHH
Q 021438 178 GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVI 255 (312)
Q Consensus 178 ~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAai 255 (312)
..+.++|.++++.|.+.|++ ++.+.+|..|+.+|++.+++++++.+.|+.+++++.. +..|+.|+.||||||
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f------~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai 181 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDA------FLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAAL 181 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTT------CCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHCCC------cEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHH
Confidence 36899999999999999997 7888999999999999999999999999999999987 788999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhhhc
Q 021438 256 YIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 256 yla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~ 294 (312)
|+|+++.|.+.+ .+.+...|+++.+|++++++|.+...
T Consensus 182 ~lA~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~i~~ly~ 219 (235)
T 1zp2_A 182 LISCCNDENTIP-KLLDLIKSTDAFKVILCVQRIISIYY 219 (235)
T ss_dssp HHHHTSCTTHHH-HHHHHCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCC-CCcchhhcCCHHHHHHHHHHHHHHHh
Confidence 999999886543 23444459999999999999998643
No 6
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.92 E-value=2.4e-23 Score=184.71 Aligned_cols=182 Identities=16% Similarity=0.186 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcC--------
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG-------- 178 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~-------- 178 (312)
..+.++|.+++.+|+||+.+..+|..||++++..+.++++++..+++||+|+|||.++.|++++||+.+++.
T Consensus 32 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~ 111 (257)
T 2ivx_A 32 QQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPL 111 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCC
Confidence 357999999999999999999999999999999999999999999999999999999999999999877521
Q ss_pred --CC-------HHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh-h--ccCCCC
Q 021438 179 --TT-------KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE-D--LDIRRS 246 (312)
Q Consensus 179 --v~-------~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~-~--l~~Gr~ 246 (312)
++ .++|.++++.|.+.|++ ++...+|+.|+.+|++.++.++++.+.|+.+++.+. . +..+..
T Consensus 112 ~~~~~~~y~~~~~~I~~~E~~iL~~L~f------~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~ 185 (257)
T 2ivx_A 112 LDTKCDAYLQQTRELVILETIMLQTLGF------EITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYK 185 (257)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHTTT------CCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHccc------ceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCC
Confidence 11 67899999999999997 788899999999999999999999999999998876 3 678999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHH----HHHHH--hCcchhHHHHHHHHHHhhhc
Q 021438 247 PISVAAAVIYIITQLSNDTKPLK----EISIV--TRVAEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 247 P~~iaaAaiyla~~~~~~~~~~~----~Ia~~--~~vs~~ti~~~~kel~~~~~ 294 (312)
|+.||+||||+|++++|.++++. ..... .++++.+|++++++|.+...
T Consensus 186 Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 186 PTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILE 239 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999876642 24443 37999999999999998654
No 7
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.92 E-value=2.1e-23 Score=185.25 Aligned_cols=182 Identities=16% Similarity=0.238 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcC-C------
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG-T------ 179 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~-v------ 179 (312)
..+.++|.+++.+|+||+.+..+|..||++++..+.+++++...+++||+|+|||.++.|++++||..++.. +
T Consensus 42 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~ 121 (258)
T 2i53_A 42 REGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFG 121 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHG
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhh
Confidence 357999999999999999999999999999999999999999999999999999999999999999976421 1
Q ss_pred -----CHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCH----HHHHHHHHHHHHhhh--ccCCCChH
Q 021438 180 -----TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN----QAVKAAQEAVQKSED--LDIRRSPI 248 (312)
Q Consensus 180 -----~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~--l~~Gr~P~ 248 (312)
+.++|.++++.|.+.|++ ++...+|+.|+.+|++.|+.+. ++.+.|+.+++.+.. +..++.|+
T Consensus 122 ~~~~~~~~~i~~~E~~iL~~L~f------~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps 195 (258)
T 2i53_A 122 QFGDDPKEEVMVLERILLQTIKF------DLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPE 195 (258)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTT------CCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHH
T ss_pred hhhhhHHHHHHHHHHHHHHHCCC------ceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChH
Confidence 357899999999999997 7888999999999999999987 688999999999876 77899999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHH-------HH--hCcchhHHHHHHHHHHhhhc
Q 021438 249 SVAAAVIYIITQLSNDTKPLKEIS-------IV--TRVAEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 249 ~iaaAaiyla~~~~~~~~~~~~Ia-------~~--~~vs~~ti~~~~kel~~~~~ 294 (312)
.||+||||+|++++|.++++.+.. .. .|+++.+|++++++|.+...
T Consensus 196 ~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 196 IIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp HHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999877654332 22 49999999999999998644
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.91 E-value=9.4e-23 Score=181.99 Aligned_cols=182 Identities=13% Similarity=0.156 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhc-CCCHHHH
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN-GTTKKEI 184 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~-p~tl~dia~~~~-~v~~~~i 184 (312)
....++|.+++..++|++.+...|..+++++.....+.+++...+++||+|+|||.++. |++++|+..+++ ..+.++|
T Consensus 39 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI 118 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQI 118 (269)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHH
Confidence 45789999999999999999999999999999998889999999999999999999988 899999999874 3799999
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHHHHhc
Q 021438 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVIYIITQLS 262 (312)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla~~~~ 262 (312)
.++++.|.+.|+. ++...+|..|+.+|++.++++.++...|+.+++.+.. ...++.|+.|||||||+|..+.
T Consensus 119 ~~mE~~IL~~L~f------~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l 192 (269)
T 2b9r_A 119 RQMEMKILRALNF------GLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKIL 192 (269)
T ss_dssp HHHHHHHHHHTTS------CCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC------ccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999997 7888999999999999999999999999999999875 5689999999999999999999
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhhhc
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~ 294 (312)
|.+.+.++++..+|+++.+|+.++++|.+...
T Consensus 193 ~~~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~ 224 (269)
T 2b9r_A 193 DNGEWTPTLQHYLSYTEESLLPVMQHLAKNVV 224 (269)
T ss_dssp TCCCSCTTHHHHSCCCSSTTTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 98888999999999999999999999988653
No 9
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.5e-22 Score=182.04 Aligned_cols=183 Identities=13% Similarity=0.186 Sum_probs=164.0
Q ss_pred hhhHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHhcC--
Q 021438 103 DRNLI-QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR-TVKEFCSVANG-- 178 (312)
Q Consensus 103 e~~l~-~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~-tl~dia~~~~~-- 178 (312)
++.+. .+.++|.+++.+|+||+.+..+|..||++++..+.++++++..+++||+|+|||.++.|+ +++||..++..
T Consensus 39 e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~ 118 (285)
T 3rgf_B 39 YWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVL 118 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 44443 479999999999999999999999999999999999999999999999999999999997 78998875421
Q ss_pred -------------CCHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccC
Q 021438 179 -------------TTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDI 243 (312)
Q Consensus 179 -------------v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~ 243 (312)
.+.++|.++++.|.+.|++ ++...+|+.|+.+|+..|+.+.++.+.|+.+++++.. +..
T Consensus 119 k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f------~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l 192 (285)
T 3rgf_B 119 KTRFSYAFPKEFPYRMNHILECEFYLLELMDC------CLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCL 192 (285)
T ss_dssp HHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTT------CCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHH
T ss_pred cccccccCchhhHHHHHHHHHHHHHHHHHcCC------CeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhh
Confidence 3678999999999999997 7888899999999999999999999999999999887 778
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhhh
Q 021438 244 RRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHL 293 (312)
Q Consensus 244 Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~ 293 (312)
+..|..||+||||+|+++.+.+. ...-..++++...|...+++|.+..
T Consensus 193 ~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~il~ly 240 (285)
T 3rgf_B 193 LYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRVILKLY 240 (285)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998654 4667789999999999999998763
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.89 E-value=5.7e-22 Score=176.10 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhc-CCCHHHH
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN-GTTKKEI 184 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~-p~tl~dia~~~~-~v~~~~i 184 (312)
..+.++|.+++..++|+..+.-.|..+++++.....+..++...+++||+|+|||.++. |++++|+..+++ ..+.++|
T Consensus 40 ~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i 119 (260)
T 2cch_B 40 AILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQV 119 (260)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHH
Confidence 45789999999999999999999999999999888788888999999999999999998 999999998874 3789999
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCH-HHHHHHHHHHHHhhh--c-cCCCChHHHHHHHHHHHHH
Q 021438 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTN-QAVKAAQEAVQKSED--L-DIRRSPISVAAAVIYIITQ 260 (312)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~~--l-~~Gr~P~~iaaAaiyla~~ 260 (312)
.++++.|.+.|+. ++...+|..|+.+|++.++++. ++...|+.+++.+.. - ..+..|+.|||||||+|..
T Consensus 120 ~~mE~~iL~~L~~------~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~ 193 (260)
T 2cch_B 120 LRMEHLVLKVLTF------DLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALY 193 (260)
T ss_dssp HHHHHHHHHHTTT------CCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC------ccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHH
Confidence 9999999999997 7788899999999999999876 888999999998763 3 7899999999999999999
Q ss_pred hcCCCCCHHHHHHHhCcchhHHHHHHHHHHhhhc
Q 021438 261 LSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 261 ~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~ 294 (312)
..+.+.+.++++..+|+++.+|+.++++|.+...
T Consensus 194 ~~~~~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~ 227 (260)
T 2cch_B 194 TVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYL 227 (260)
T ss_dssp HHHSCCSCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 9988888999999999999999999999998653
No 11
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.88 E-value=2.9e-21 Score=172.60 Aligned_cols=188 Identities=15% Similarity=0.204 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhc-CCCHHHH
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN-GTTKKEI 184 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~-p~tl~dia~~~~-~v~~~~i 184 (312)
....++|.+++..+++++.+.-.|..+++++.....+..++...+++||+|+|||.++. |++++|++.+++ ..+.++|
T Consensus 58 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI 137 (271)
T 2w96_A 58 KIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEEL 137 (271)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHH
Confidence 45789999999999999999999999999999988888899999999999999999998 999999998864 3799999
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHH----HHHHHHHHHHhhh--ccCCCChHHHHHHHHHHH
Q 021438 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA----VKAAQEAVQKSED--LDIRRSPISVAAAVIYII 258 (312)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v----~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla 258 (312)
.++++.|.+.|++ ++...+|..|+.+|++.++++.+. .+.|+.+++.+.. ...+..|+.|||||||+|
T Consensus 138 ~~mE~~IL~~L~~------~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA 211 (271)
T 2w96_A 138 LQMELLLVNKLKW------NLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAA 211 (271)
T ss_dssp HHHHHHHHHHTTT------CCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC------ccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 9999999999997 788899999999999999998765 3567888877653 446899999999999999
Q ss_pred HHhcCC---------CCCHHHHHHHhCcchhHHHHHHHHHHhhhcccCCcc
Q 021438 259 TQLSND---------TKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDW 300 (312)
Q Consensus 259 ~~~~~~---------~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~p~~ 300 (312)
....+. ..++++++.++|+++.+|++++++|.+.+..-+..+
T Consensus 212 ~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~~~ 262 (271)
T 2w96_A 212 VQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQA 262 (271)
T ss_dssp HHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 987753 123678999999999999999999999887766544
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.88 E-value=1.6e-22 Score=187.06 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcC--------
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG-------- 178 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~-------- 178 (312)
..+.++|.+++.+|+||+.+..+|..||++++....++++++..+++||||+|||.++.|++++||..+++.
T Consensus 39 ~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~ 118 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL 118 (358)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccc
Confidence 357999999999999999999999999999999999999999999999999999999999999999865420
Q ss_pred --C-------CHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh-h--ccCCCC
Q 021438 179 --T-------TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSE-D--LDIRRS 246 (312)
Q Consensus 179 --v-------~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~-~--l~~Gr~ 246 (312)
+ ..++|.++++.|.+.|++ ++.+.+|+.||.+|+..++.+.++.+.|+.+++++. . +..+..
T Consensus 119 ~~~~~~~y~~~~~~Il~~E~~IL~~L~f------~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~ 192 (358)
T 2pk2_A 119 PDTRSEAYLQQVQDLVILESIILQTLGF------ELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT 192 (358)
T ss_dssp CCTTSHHHHGGGTGGGTHHHHHHHHTTT------CCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSC
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHcCC------ceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccC
Confidence 1 256788889999999997 788899999999999999999999999999998876 2 678999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHH----HHHHH--hCcchhHHHHHHHHHHhhhc
Q 021438 247 PISVAAAVIYIITQLSNDTKPLK----EISIV--TRVAEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 247 P~~iaaAaiyla~~~~~~~~~~~----~Ia~~--~~vs~~ti~~~~kel~~~~~ 294 (312)
|..|||||||+|+++++.++++. .+... +++++.+|++++++|.+...
T Consensus 193 Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 193 PPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999776642 24444 37899999999999998654
No 13
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.85 E-value=5.4e-20 Score=168.01 Aligned_cols=185 Identities=12% Similarity=0.140 Sum_probs=153.3
Q ss_pred chhhHH-HHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcC
Q 021438 102 PDRNLI-QAFKSISAMSDRLG--LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178 (312)
Q Consensus 102 ~e~~l~-~~~~~I~~~~~~L~--Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~ 178 (312)
.|..+. .+..+|.++|.+|+ ||+.+..+|..||++++..+.+++.++..+++||+|+|||.++.|++++||+..+ .
T Consensus 52 eE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~-~ 130 (323)
T 1jkw_A 52 EEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNL-R 130 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHh-c
Confidence 355554 46799999999999 9999999999999999999999999999999999999999999999999998766 3
Q ss_pred CC-------HHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHhhh--cc
Q 021438 179 TT-------KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL-------GMTNQAVKAAQEAVQKSED--LD 242 (312)
Q Consensus 179 v~-------~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L-------~l~~~v~~~A~~i~~~~~~--l~ 242 (312)
.+ .++|.++++.|.+.|++ ++.+.+|+.|+.+|+..| +.++.+.+.|+.+++.+.. +.
T Consensus 131 ~~p~~~~~~~~~Il~~E~~iL~~L~f------~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~ 204 (323)
T 1jkw_A 131 ESPLGQEKALEQILEYELLLIQQLNF------HLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAY 204 (323)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTT------CCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHH
T ss_pred cChhhhHHHHHHHHHHHHHHHHHCCC------cEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHH
Confidence 45 57899999999999997 788899999999999776 3345688999999999876 66
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCH--HHHHH--HhCcchhHHHHHHHHHHhhh
Q 021438 243 IRRSPISVAAAVIYIITQLSNDTKPL--KEISI--VTRVAEGTIKNVYKDLFPHL 293 (312)
Q Consensus 243 ~Gr~P~~iaaAaiyla~~~~~~~~~~--~~Ia~--~~~vs~~ti~~~~kel~~~~ 293 (312)
.+..|..||+||||+|++..|.+++. .++-. ..+.+..-+....++|....
T Consensus 205 l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~ 259 (323)
T 1jkw_A 205 LLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLV 259 (323)
T ss_dssp HHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHH
Confidence 78999999999999999999876552 22211 13445566666666665543
No 14
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.85 E-value=4.3e-20 Score=163.68 Aligned_cols=183 Identities=11% Similarity=0.107 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhc-CCCHHHH
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN-GTTKKEI 184 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~-p~tl~dia~~~~-~v~~~~i 184 (312)
....++|.+++..++|+..+.-.|..|++++.....+++++...+++||+|+|||.++. |++++|+..+++ ..+.++|
T Consensus 52 ~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 131 (257)
T 1g3n_C 52 KLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQEL 131 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHH
Confidence 45789999999999999999999999999999988888889999999999999998876 999999998864 3789999
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHH----HHHHHHHHHHhhh--ccCCCChHHHHHHHHHHH
Q 021438 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA----VKAAQEAVQKSED--LDIRRSPISVAAAVIYII 258 (312)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v----~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla 258 (312)
.++.+.|.+.|+. ++...+|..|+.+|++.++++.+. .+.|+.+++.+.. ...+.+|+.|||||||+|
T Consensus 132 ~~mE~~iL~~L~~------~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA 205 (257)
T 1g3n_C 132 IDQEKELLEKLAW------RTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALL 205 (257)
T ss_dssp HHHHHHHHHHTTT------CCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC------cCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHH
Confidence 9999999999997 778899999999999999987543 5668888877664 457999999999999999
Q ss_pred HHhcCC------CCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 259 TQLSND------TKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 259 ~~~~~~------~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
....+. +.+.++++..+|+++.+|+.++++|.+.+..
T Consensus 206 ~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~ 248 (257)
T 1g3n_C 206 VPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSD 248 (257)
T ss_dssp CCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 998874 3457899999999999999999999987643
No 15
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.84 E-value=1.4e-19 Score=160.12 Aligned_cols=182 Identities=18% Similarity=0.241 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhc-CCCHHHH
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQEN-KPRTVKEFCSVAN-GTTKKEI 184 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~-~p~tl~dia~~~~-~v~~~~i 184 (312)
....++|.+++..++|+..+.-.|..|+.++.....+++++...+++||+|+|||.++ .|++++|+..+.+ ..+.++|
T Consensus 53 ~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 132 (254)
T 2f2c_A 53 TILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLEL 132 (254)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHH
Confidence 4578999999999999999999999999999998888999999999999999999977 5999999987653 3789999
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHH----HHHHHHHHHHhhh--ccCCCChHHHHHHHHHHH
Q 021438 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQA----VKAAQEAVQKSED--LDIRRSPISVAAAVIYII 258 (312)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v----~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla 258 (312)
.++.+.|.+.|+. ++...+|..|+.+|+..++++.+. .+.|+.+++.+.. ...+.+|+.|||||||+|
T Consensus 133 ~~mE~~IL~~L~~------~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la 206 (254)
T 2f2c_A 133 INQEKDILEALKW------DTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTT 206 (254)
T ss_dssp HHHHHHHHHHTTT------CCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC------cCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHH
Confidence 9999999999997 778899999999999999988653 4568888876654 457999999999999999
Q ss_pred HHhcC-CCCC----HHHHHHHhCcchhHHHHHHHHHHhhhc
Q 021438 259 TQLSN-DTKP----LKEISIVTRVAEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 259 ~~~~~-~~~~----~~~Ia~~~~vs~~ti~~~~kel~~~~~ 294 (312)
.+..+ .+.+ +++++..+|+++.+|+.+++.|.+.+.
T Consensus 207 ~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 207 IETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFS 247 (254)
T ss_dssp HHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 99863 4455 789999999999999999999988653
No 16
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.81 E-value=1.9e-18 Score=155.17 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhc-CCCHHH
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ-KPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN-GTTKKE 183 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~-~~~~gr~~~~iaaAcly~acr~~~~-p~tl~dia~~~~-~v~~~~ 183 (312)
....++|.+++..+++++.+.-.|..+++++... +.+++++...+++||+|+|||.++. |++++|+..+++ ..+.++
T Consensus 51 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 51 AILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHH
Confidence 4578999999999999999999999999999986 5778899999999999999999987 899999998774 378999
Q ss_pred HHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHH-----------HHHHHHHHHHHhhh--ccCCCChHHH
Q 021438 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ-----------AVKAAQEAVQKSED--LDIRRSPISV 250 (312)
Q Consensus 184 i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~-----------v~~~A~~i~~~~~~--l~~Gr~P~~i 250 (312)
|.++++.|.+.|+. ++...+|..|+.+|++.+++++. ....+.++++.+.. -..+..|+.|
T Consensus 131 i~~mE~~IL~~L~~------~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~i 204 (283)
T 1w98_B 131 ILTMELMIMKALKW------RLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGIL 204 (283)
T ss_dssp HHHHHHHHHHHTTT------CCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHH
T ss_pred HHHHHHHHHHHcCC------cCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHH
Confidence 99999999999997 77889999999999998876532 22345566666553 4579999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 251 AAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 251 aaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
||||||+|+ .++.+...+|+++.+|+.++++|.+....
T Consensus 205 AaAai~la~-------~~~~l~~~tg~~~~~i~~c~~~l~~~~~~ 242 (283)
T 1w98_B 205 AASALYHFS-------SSELMQKVSGYQWCDIENCVKWMVPFAMV 242 (283)
T ss_dssp HHHHHHHTS-------CHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------ChHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999985 37889999999999999999999887554
No 17
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.79 E-value=6.8e-18 Score=152.99 Aligned_cols=185 Identities=12% Similarity=0.149 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhc-CCCHHHH
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQEN-KPRTVKEFCSVAN-GTTKKEI 184 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~-~p~tl~dia~~~~-~v~~~~i 184 (312)
..+.++|.+++..++|++.+...|..|+++++....+.......++++|+|+|||.++ .|.++.++..+.+ ..+.++|
T Consensus 72 ~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i 151 (306)
T 3g33_B 72 KMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQL 151 (306)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHH
Confidence 4579999999999999999999999999999998888889999999999999999865 5789999998764 3789999
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHH----HHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHH
Q 021438 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ----AVKAAQEAVQKSED--LDIRRSPISVAAAVIYII 258 (312)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~----v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla 258 (312)
.++.+.|.+.|+. ++...+|..|+.+|+..++++.+ +.+.|+.+++.+.. ...+..|+.|||||||+|
T Consensus 152 ~~mE~~IL~~L~f------~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA 225 (306)
T 3g33_B 152 RDWEVLVLGKLKW------DLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAA 225 (306)
T ss_dssp HHHHHHHHHHTTT------CCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC------ccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence 9999999999997 78889999999999999988743 45678888887654 567999999999999999
Q ss_pred HHhcCCCCC-----HHHHHHHhCcchhHHHHHHHHHHhhhcccC
Q 021438 259 TQLSNDTKP-----LKEISIVTRVAEGTIKNVYKDLFPHLARII 297 (312)
Q Consensus 259 ~~~~~~~~~-----~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~ 297 (312)
....+.... ...++..+|+++.+|+.+++.|.+.+..-+
T Consensus 226 ~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 226 VQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp HHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 999875432 367889999999999999999999876543
No 18
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.5e-20 Score=148.44 Aligned_cols=66 Identities=32% Similarity=0.617 Sum_probs=58.7
Q ss_pred CCCCCCCCCC-CceeeeCCCCceEcCCCcccccCcccccccccccccCCC-CCCCCCccCCCCCCccc
Q 021438 3 DSYCADCKRL-TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPLNPLLS 68 (312)
Q Consensus 3 ~~~Cp~Cg~~-~~ii~D~~~G~~vC~~CG~Vv~e~~id~~~ewr~f~~~~-~~~~~~r~G~~~~~~~~ 68 (312)
...||+||+. +++++|+.+|++||.+||+|++|++||.|||||+|++++ ++.|++|+|+|.+++..
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFsnDD~~~dDpSRVGAPs~~~~~ 88 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNXXXXXXXXXXXXXXXXXXXX 88 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHHCCCTTTTCSCCCBCCBCCHHH
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcCCcccccccccccccccccccc
Confidence 4589999982 479999999999999999999999999999999999765 36789999999987654
No 19
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.73 E-value=1.9e-18 Score=116.41 Aligned_cols=47 Identities=43% Similarity=0.777 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccccCcccccccccccccCC
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE 50 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e~~id~~~ewr~f~~~ 50 (312)
...||+||+ ..+++|+.+|++||..||+|++|++||.|||||+|+++
T Consensus 11 ~~~Cp~C~~-~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~~~ 57 (58)
T 1dl6_A 11 RVTCPNHPD-AILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND 57 (58)
T ss_dssp CCSBTTBSS-SCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSCCC
T ss_pred cccCcCCCC-CceeEeCCCCeEEeCCCCCEEeccccccCCcccccCCC
Confidence 458999998 57999999999999999999999999999999999865
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=99.58 E-value=1e-15 Score=100.44 Aligned_cols=44 Identities=34% Similarity=0.940 Sum_probs=41.9
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccccCccccccccccccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFA 48 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e~~id~~~ewr~f~ 48 (312)
..||+||+ ..+++|+.+|++||..||+|++++.||.|||||+|+
T Consensus 6 ~~CP~C~~-~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSC-CCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCC-cceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 57999998 589999999999999999999999999999999997
No 21
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.52 E-value=1.8e-12 Score=114.05 Aligned_cols=180 Identities=8% Similarity=0.030 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhc-CCCHHHH
Q 021438 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN-GTTKKEI 184 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~-p~tl~dia~~~~-~v~~~~i 184 (312)
....++|-+++..++|++.+.-.|..++.++.....+.......++++|+|+|+|.++. |.++.++...++ ..+.++|
T Consensus 50 ~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i 129 (252)
T 1f5q_B 50 KVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKL 129 (252)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHH
Confidence 35689999999999999999999999999999887777778999999999999998775 889999988765 4789999
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHH----HHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHH
Q 021438 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ----AVKAAQEAVQKSED--LDIRRSPISVAAAVIYII 258 (312)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~----v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla 258 (312)
.++.+.|.+.|+. ++..++|..|+.+|...++.+.+ +.+.|..++..+.- -....+|+.|||||+.++
T Consensus 130 ~~mE~~IL~~L~w------~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~ 203 (252)
T 1f5q_B 130 LTLEVKSLDTLSW------VADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLT 203 (252)
T ss_dssp HHHHHHHHHHTTT------CCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC------ccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHH
Confidence 9999999999997 78889999999999999998865 34566776666543 235789999999996544
Q ss_pred HHhcCCCCC----HHHHHHHhCcchhHHHHHHHHHHhhhc
Q 021438 259 TQLSNDTKP----LKEISIVTRVAEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 259 ~~~~~~~~~----~~~Ia~~~~vs~~ti~~~~kel~~~~~ 294 (312)
. .+...+ ...++..+|++...++..++.|.+.+.
T Consensus 204 l--~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 204 M--NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIV 241 (252)
T ss_dssp H--TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred h--ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3 222222 346788899999999999999888764
No 22
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.51 E-value=1.2e-13 Score=117.49 Aligned_cols=89 Identities=28% Similarity=0.401 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHH
Q 021438 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (312)
Q Consensus 108 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~ 187 (312)
....+|.++|+.|+||+.+.+.|..+++.+.+.+...|++|..+||||||+||+.+|.|++++||+.++ |+++.+|++.
T Consensus 107 ~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~-~vs~~ti~~~ 185 (200)
T 1ais_B 107 KPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVA-RVTEVTVRNR 185 (200)
T ss_dssp CGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH-TCCHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHh-CCCHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHhh
Q 021438 188 KEFIVKHLEA 197 (312)
Q Consensus 188 ~~~l~~~l~~ 197 (312)
|+.|.+.|++
T Consensus 186 ~~~l~~~l~~ 195 (200)
T 1ais_B 186 YKELVEKLKI 195 (200)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCC
Confidence 9999999987
No 23
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.32 E-value=1e-11 Score=106.13 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHH
Q 021438 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (312)
Q Consensus 108 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~ 187 (312)
....+|.++++.|++|+.+.+.|..+++.+.+.+...|++|..+||||||+||+..|.+++++||+.++ ++++.+|++.
T Consensus 101 ~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~-~v~~~tI~~~ 179 (207)
T 1c9b_A 101 TTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA-GVADVTIRQS 179 (207)
T ss_dssp CTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHH-TCCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHh-CCCHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHhh
Q 021438 188 KEFIVKHLEA 197 (312)
Q Consensus 188 ~~~l~~~l~~ 197 (312)
|+.|.+.++.
T Consensus 180 ~~~l~~~l~~ 189 (207)
T 1c9b_A 180 YRLIYPRAPD 189 (207)
T ss_dssp HHHHGGGHHH
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 24
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.00 E-value=1.6e-09 Score=99.26 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHH
Q 021438 207 TIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKN 284 (312)
Q Consensus 207 ~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~ 284 (312)
.......|.++|+.|+||+.+...|..+.+.+.. +..||+..++||||||+||+..+.+++++||+++++++...|.+
T Consensus 126 L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keigr 205 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGK 205 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHH
Confidence 4556789999999999999999999999999986 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcc
Q 021438 285 VYKDLFPHLAR 295 (312)
Q Consensus 285 ~~kel~~~~~~ 295 (312)
.|+.|.+.+..
T Consensus 206 ~~k~l~~~L~l 216 (345)
T 4bbr_M 206 TLNIMKNILRG 216 (345)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHhCc
Confidence 99999998875
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.7e-10 Score=106.07 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHH
Q 021438 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (312)
Q Consensus 109 ~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~ 188 (312)
...+|.++|+.|+|+..+...|..|.+.+.+.++..||+|..+||||||+|++..+.+++.++|+.++ ++++.+|+..|
T Consensus 235 p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~-~Vse~TIr~~y 313 (345)
T 3k7a_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL-QVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-CCCHHHHHHHH
Confidence 45678899999999999999999999999988888999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHh
Q 021438 189 EFIVKHLE 196 (312)
Q Consensus 189 ~~l~~~l~ 196 (312)
+.|.+.+.
T Consensus 314 kel~~~~~ 321 (345)
T 3k7a_M 314 KILYEHRD 321 (345)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99998775
No 26
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.10 E-value=2.7e-05 Score=67.33 Aligned_cols=85 Identities=12% Similarity=0.172 Sum_probs=75.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCC-CChHHHHHHHHHHHHHhcCCCCCHHHHHHHh--------Ccch
Q 021438 211 SDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIR-RSPISVAAAVIYIITQLSNDTKPLKEISIVT--------RVAE 279 (312)
Q Consensus 211 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~G-r~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~--------~vs~ 279 (312)
.++|.+++..|+++..+...|..+.++... ...+ ++|..|++||+|+||+..+.++++++|+.++ ..+.
T Consensus 32 ~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~~ 111 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSR 111 (235)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhccH
Confidence 468999999999999999999999998765 4455 9999999999999999999999999999876 5788
Q ss_pred hHHHHHHHHHHhhhcc
Q 021438 280 GTIKNVYKDLFPHLAR 295 (312)
Q Consensus 280 ~ti~~~~kel~~~~~~ 295 (312)
..|.+..+.|.+.++-
T Consensus 112 ~~I~~~E~~iL~~L~f 127 (235)
T 1zp2_A 112 SNISEIEFEIISVLDA 127 (235)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCC
Confidence 8999999999988764
No 27
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=97.81 E-value=0.00052 Score=56.54 Aligned_cols=115 Identities=20% Similarity=0.353 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHH
Q 021438 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRG---RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185 (312)
Q Consensus 109 ~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~g---r~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~ 185 (312)
..+.|..+..+-.+|+.+.+.|.++.+.+...+--+| .+...++|||+.+|....+.|+++.|+--.- -+..++.
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD--~sL~Dve 92 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLD--SSLGDVE 92 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHC--TTCCCHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHHh--hhhhHHH
Confidence 4567788899999999999999999998865433333 4677999999999999999999999997643 2222333
Q ss_pred HHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHH
Q 021438 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (312)
Q Consensus 186 ~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (312)
-..-+|.+.++++.... .+...-...++..|..+|+|+-.
T Consensus 93 lrr~Eiv~~l~l~e~e~-rl~~~~~~NLl~~Yv~kL~Lq~s 132 (260)
T 3h4c_A 93 LRRADIVRELHLEDSER-RLRDTFADNLLVKYILKLGLQVS 132 (260)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHccCCHHHH-HHHHHhhhhHHHHHHHHhccchh
Confidence 33336666666531100 01111134577788888888743
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=97.56 E-value=0.00024 Score=62.31 Aligned_cols=89 Identities=7% Similarity=-0.109 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHH
Q 021438 108 QAFKSISAMSDRLGLVT-TIKDRANEIYKKVEDQKP-LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185 (312)
Q Consensus 108 ~~~~~I~~~~~~L~Lp~-~v~~~A~~i~~~~~~~~~-~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~ 185 (312)
....++..++..++++. .+...|..+......... +-+.++..+||||+|+|++..+.+....++..++ |++..+|.
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~-g~~~~~i~ 216 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKT-GYTLESLK 216 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHH-CCCHHHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHh-CcCHHHHH
Confidence 35788999999999986 777888877777543332 5789999999999999999888888888999888 89999999
Q ss_pred HHHHHHHHHHhh
Q 021438 186 RAKEFIVKHLEA 197 (312)
Q Consensus 186 ~~~~~l~~~l~~ 197 (312)
..++.|.+.+..
T Consensus 217 ~~~~~l~~~~~~ 228 (260)
T 2cch_B 217 PCLMDLHQTYLK 228 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=97.53 E-value=0.00012 Score=64.51 Aligned_cols=87 Identities=8% Similarity=-0.021 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHH
Q 021438 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (312)
Q Consensus 109 ~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~ 188 (312)
...++.+++..++++..+...|..+.........+-+.+|..+||||+|+|++..+.+....++...+ |++..+|...+
T Consensus 138 p~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~t-g~~~~~l~~~~ 216 (269)
T 2b9r_A 138 PLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYL-SYTEESLLPVM 216 (269)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHS-CCCSSTTTTHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHH-CCCHHHHHHHH
Confidence 46788999999999998888898888887766667789999999999999999998887777888888 89999999999
Q ss_pred HHHHHHHh
Q 021438 189 EFIVKHLE 196 (312)
Q Consensus 189 ~~l~~~l~ 196 (312)
+.|.+.+.
T Consensus 217 ~~l~~~~~ 224 (269)
T 2b9r_A 217 QHLAKNVV 224 (269)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987764
No 30
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.52 E-value=0.00048 Score=60.11 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=68.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCc--c--------
Q 021438 211 SDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRV--A-------- 278 (312)
Q Consensus 211 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~v--s-------- 278 (312)
.++|.+++.+|+++.++...|..++++... ...++++.-|++||+|+||+....++++++|+.++.. +
T Consensus 45 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~~~ 124 (258)
T 2i53_A 45 ARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFG 124 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGGGC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhhhhh
Confidence 468899999999999999999999998764 5578999999999999999999988999999876542 2
Q ss_pred ---hhHHHHHHHHHHhhhc
Q 021438 279 ---EGTIKNVYKDLFPHLA 294 (312)
Q Consensus 279 ---~~ti~~~~kel~~~~~ 294 (312)
...|.+..+.|++.++
T Consensus 125 ~~~~~~i~~~E~~iL~~L~ 143 (258)
T 2i53_A 125 DDPKEEVMVLERILLQTIK 143 (258)
T ss_dssp SCHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 3455555566666554
No 31
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.48 E-value=0.00056 Score=60.76 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHH
Q 021438 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (312)
Q Consensus 109 ~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~ 188 (312)
.+.+|.+++..|++++.+...|..+.........+-+..+..+||||||+|++..+.+. ..-...+ +++..+|...+
T Consensus 157 P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~-~~~~~~l~~~~ 233 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAEL-SVDMEKILEII 233 (285)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTS-CSCHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHH-CCCHHHHHHHH
Confidence 46788999999999999999999999988766666789999999999999999988754 4566667 79999999999
Q ss_pred HHHHHHHhh
Q 021438 189 EFIVKHLEA 197 (312)
Q Consensus 189 ~~l~~~l~~ 197 (312)
+.|......
T Consensus 234 ~~il~ly~~ 242 (285)
T 3rgf_B 234 RVILKLYEQ 242 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998877754
No 32
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.46 E-value=0.00067 Score=59.20 Aligned_cols=66 Identities=6% Similarity=0.179 Sum_probs=59.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhC
Q 021438 211 SDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTR 276 (312)
Q Consensus 211 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~ 276 (312)
.++|.+++.+|+++.++...|..++++-.. ...+++|.-|++||+|+||+....++++++|+.++.
T Consensus 35 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~ 102 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHH
Confidence 478999999999999999999999998765 557899999999999999999998999999987763
No 33
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=97.44 E-value=0.00095 Score=60.36 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=68.9
Q ss_pred HHHHHHHhhcC--CCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcc-------hh
Q 021438 212 DYLRRFCSNLG--MTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVA-------EG 280 (312)
Q Consensus 212 ~~i~r~~~~L~--l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs-------~~ 280 (312)
.+|.+++..|+ ++..+...|..++++-.. ...+++|..|++||+||||+....++++++++..+... ..
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~~~ 141 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALE 141 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHHHH
Confidence 57888999999 999999999999998765 55789999999999999999999999999998776544 24
Q ss_pred HHHHHHHHHHhhhcc
Q 021438 281 TIKNVYKDLFPHLAR 295 (312)
Q Consensus 281 ti~~~~kel~~~~~~ 295 (312)
.|.+....|.+.++-
T Consensus 142 ~Il~~E~~iL~~L~f 156 (323)
T 1jkw_A 142 QILEYELLLIQQLNF 156 (323)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCC
Confidence 566666666666553
No 34
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=97.28 E-value=0.0015 Score=47.64 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=64.9
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHH
Q 021438 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR------GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGR 186 (312)
Q Consensus 113 I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~------gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~ 186 (312)
|+++|-.||.++ +++.|.+++.++... +.. ..+....+||++|.+||..+...+-..+.+.+ |+++.++.+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s-~lk~~~f~~ 82 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATS-GVKKAIFDR 82 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTT-CBCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHH-CCCHHHHHH
Confidence 788999999997 888899998887533 211 23455789999999999999999999999988 899999888
Q ss_pred HHHHHHHHH
Q 021438 187 AKEFIVKHL 195 (312)
Q Consensus 187 ~~~~l~~~l 195 (312)
....+.+..
T Consensus 83 l~~~~e~~~ 91 (95)
T 3m03_A 83 LCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776554
No 35
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.14 E-value=0.0011 Score=60.93 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Q 021438 211 SDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVT 275 (312)
Q Consensus 211 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~ 275 (312)
.++|.+++..|+|+.++...|..++++... ...+++|.-|++||+||||+....++++++|..++
T Consensus 42 v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~ 108 (358)
T 2pk2_A 42 ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 578999999999999999999999998765 55789999999999999999999988999998665
No 36
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=97.00 E-value=0.0023 Score=55.66 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCcHHH----HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHh-CCCCC----HHHHHHHhcCCC
Q 021438 110 FKSISAMSDRLGLVTTI----KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE-NKPRT----VKEFCSVANGTT 180 (312)
Q Consensus 110 ~~~I~~~~~~L~Lp~~v----~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~-~~p~t----l~dia~~~~~v~ 180 (312)
+.++..++..++++... ...|..+.........+-+.++..+||||+|+|.+.. +.|.+ ..++..++ |++
T Consensus 153 ~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t-g~~ 231 (254)
T 2f2c_A 153 TDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL-NFS 231 (254)
T ss_dssp GGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH-TCC
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH-CcC
Confidence 45778888888887643 3456666655544444568899999999999999986 44556 78888888 899
Q ss_pred HHHHHHHHHHHHHHHh
Q 021438 181 KKEIGRAKEFIVKHLE 196 (312)
Q Consensus 181 ~~~i~~~~~~l~~~l~ 196 (312)
..+|...++.|.+.+.
T Consensus 232 ~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 232 TNTVRTVKDQVSEAFS 247 (254)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988775
No 37
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=96.98 E-value=0.0046 Score=54.33 Aligned_cols=85 Identities=8% Similarity=0.142 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cchhHHHHH
Q 021438 211 SDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVIYIITQLSND-TKPLKEISIVTR--VAEGTIKNV 285 (312)
Q Consensus 211 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~--vs~~ti~~~ 285 (312)
.+++.+++.+++++.++...|..++++-.. -...+++.-+++||+|+|++..+. +.+.++++..++ .+...|.+.
T Consensus 61 v~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~m 140 (271)
T 2w96_A 61 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQM 140 (271)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHH
Confidence 357778888899999898899999888665 346788999999999999999986 788999998864 788999999
Q ss_pred HHHHHhhhcc
Q 021438 286 YKDLFPHLAR 295 (312)
Q Consensus 286 ~kel~~~~~~ 295 (312)
.+.|.+.++-
T Consensus 141 E~~IL~~L~~ 150 (271)
T 2w96_A 141 ELLLVNKLKW 150 (271)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHCCC
Confidence 9999998764
No 38
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=96.89 E-value=0.0024 Score=55.68 Aligned_cols=88 Identities=16% Similarity=0.035 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCcHHH----HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCC------CCCHHHHHHHhcC
Q 021438 109 AFKSISAMSDRLGLVTTI----KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK------PRTVKEFCSVANG 178 (312)
Q Consensus 109 ~~~~I~~~~~~L~Lp~~v----~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~------p~tl~dia~~~~~ 178 (312)
.+.++..++..++++... ...|..+.........+-+.++..+||||+|+|.+..+. +....++...+ |
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t-~ 229 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL-G 229 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH-T
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH-C
Confidence 567888899999887543 455666666555445567899999999999999988875 34567888888 8
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 021438 179 TTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 179 v~~~~i~~~~~~l~~~l~~ 197 (312)
++..+|...++.|.+.+..
T Consensus 230 ~~~~~l~~c~~~i~~l~~~ 248 (257)
T 1g3n_C 230 CDVSVLQAAVEQILTSVSD 248 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 39
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=96.87 E-value=0.00079 Score=46.39 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 2 ~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
+...||.|++ .+.++..+|.++|..||...
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKG--RLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCC--BEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC--cCEEeCCCCEEEcCCCCcee
Confidence 4568999998 58999999999999999885
No 40
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=96.80 E-value=0.0009 Score=45.83 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 2 ~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
+...||.|++ .+.++...|.++|..||...
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKG--RLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCC--BCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 4568999997 58899899999999999885
No 41
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=96.77 E-value=0.00098 Score=45.47 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 2 ~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
+...||.|++ .+.+|..+|.++|..||...
T Consensus 9 eiL~CP~ck~--~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKG--PLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCC--cCeEeCCCCEEEcCCCCccc
Confidence 4458999998 58999999999999999875
No 42
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=96.65 E-value=0.00092 Score=45.93 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 2 ~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
+...||.|++ .+.++..+|.++|..||...
T Consensus 7 eiL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKG--PLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCC--CCEECTTSSEEEETTTTEEE
T ss_pred hheeCCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 3468999998 58888889999999999885
No 43
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=96.64 E-value=0.00093 Score=44.79 Aligned_cols=31 Identities=32% Similarity=0.771 Sum_probs=28.5
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
.+||.|+. ..+|++..+-.+.|..||.++.+
T Consensus 8 VKCp~C~n-iq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCPDCEH-EQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECTTTCC-EEEEESSCSSCEECSSSCCEEEE
T ss_pred EECCCCCC-ceEEEecCceEEEcccCCCEEee
Confidence 58999998 68999999999999999999964
No 44
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=96.60 E-value=0.00082 Score=46.04 Aligned_cols=29 Identities=34% Similarity=0.592 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
...||.|++ .+.++..+|.++|..||...
T Consensus 8 iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKG--PLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 458999997 58899899999999999885
No 45
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.55 E-value=0.016 Score=51.24 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=72.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh---ccCCCChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cchhHHHH
Q 021438 211 SDYLRRFCSNLGMTNQAVKAAQEAVQKSED---LDIRRSPISVAAAVIYIITQLSND-TKPLKEISIVTR--VAEGTIKN 284 (312)
Q Consensus 211 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~---l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~--vs~~ti~~ 284 (312)
.++|..++.+++++.++...|..++++... ...++.+.-+++||+|+|++.... ..+.++++.+++ .+...|.+
T Consensus 54 v~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~ 133 (283)
T 1w98_B 54 LDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILT 133 (283)
T ss_dssp HHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHH
Confidence 367888999999999999999999998664 346889999999999999999875 677999998874 78889999
Q ss_pred HHHHHHhhhcc
Q 021438 285 VYKDLFPHLAR 295 (312)
Q Consensus 285 ~~kel~~~~~~ 295 (312)
..+.|.+.++-
T Consensus 134 mE~~IL~~L~~ 144 (283)
T 1w98_B 134 MELMIMKALKW 144 (283)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHcCC
Confidence 99999988764
No 46
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.54 E-value=0.0012 Score=43.91 Aligned_cols=31 Identities=35% Similarity=0.754 Sum_probs=28.5
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
.+||.|+. ..+|+++.+-.+.|..||.++.+
T Consensus 16 VkCp~C~~-~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCIDCGN-EQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECSSSCC-EEEEESSCSSCEECSSSCCEEEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccCcCCEEec
Confidence 47999998 68999999999999999999975
No 47
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.48 E-value=0.001 Score=47.37 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=26.7
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
..||.||+ +.++|...|.+.|..||.++..
T Consensus 28 y~Cp~CG~--~~v~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 28 HACPNCGE--DRVDRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp EECSSSCC--EEEEEEETTEEEETTTCCEEEC
T ss_pred CcCCCCCC--cceeccCCCeEECCCCCCEecC
Confidence 47999997 5889999999999999998764
No 48
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=96.21 E-value=0.0022 Score=44.86 Aligned_cols=31 Identities=26% Similarity=0.769 Sum_probs=28.4
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
.+||.|+. ..+|+++.+-.+.|..||.|+-+
T Consensus 33 VkCp~C~n-~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCAQCQN-IQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECSSSCC-EEEEETTCSSCEECSSSCCEEEE
T ss_pred eECCCCCC-eeEEEecCccEEEccCCCCEEee
Confidence 47999998 68999999999999999999964
No 49
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=96.13 E-value=0.015 Score=52.58 Aligned_cols=71 Identities=14% Similarity=0.253 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhc
Q 021438 107 IQAFKSISAMSDRLGLVT-TIKDRANEIYKKVED--QKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN 177 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp~-~v~~~A~~i~~~~~~--~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~ 177 (312)
.-|...|+.+|+.|+++. .+.+.+..+|..+.. ..++++|..+.++.+|+|..||..+...++++|.....
T Consensus 216 ~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 216 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 347888999999998875 566677777766644 36779999999999999999999999999999998764
No 50
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=96.12 E-value=0.0025 Score=44.60 Aligned_cols=31 Identities=26% Similarity=0.654 Sum_probs=28.5
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
.+||.|+. ..+|+++.+-.+.|..||.|+.+
T Consensus 35 VkCp~C~~-~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCPGCLN-ITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECTTSCS-CEEEESBCSSCCCCSSSCCCCEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccccCCEEec
Confidence 47999998 68999999999999999999975
No 51
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=96.12 E-value=0.017 Score=51.62 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCcHH----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-----HHHHHHHhcCCC
Q 021438 110 FKSISAMSDRLGLVTT----IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT-----VKEFCSVANGTT 180 (312)
Q Consensus 110 ~~~I~~~~~~L~Lp~~----v~~~A~~i~~~~~~~~~~~gr~~~~iaaAcly~acr~~~~p~t-----l~dia~~~~~v~ 180 (312)
+.+|..+...++++.. +...|..+.........+-+.++..+||||||+|.+..+.... ...+..++ |++
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~t-g~~ 250 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGIT-GTE 250 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHH-TCC
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH-CCC
Confidence 4577888888888643 4456666666554444566899999999999999997764322 25667778 899
Q ss_pred HHHHHHHHHHHHHHHhh
Q 021438 181 KKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 181 ~~~i~~~~~~l~~~l~~ 197 (312)
..+|...++.|.+.+..
T Consensus 251 ~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 251 VDCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988864
No 52
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=96.12 E-value=0.014 Score=54.03 Aligned_cols=70 Identities=14% Similarity=0.268 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhc
Q 021438 108 QAFKSISAMSDRLGLVT-TIKDRANEIYKKVED--QKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN 177 (312)
Q Consensus 108 ~~~~~I~~~~~~L~Lp~-~v~~~A~~i~~~~~~--~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~ 177 (312)
-|...|+.+|++|++++ .+.+....+|.-... ..++++|..+.++.+|+|..||..+..++++||....+
T Consensus 281 LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 281 LAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 47889999999999875 566676666666543 46779999999999999999999999999999998764
No 53
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=95.94 E-value=0.014 Score=44.50 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 2 ~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
+...||.|++ .-.-+| ...+||.+||.--
T Consensus 26 ~lP~CP~C~s-eytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNS-EYTYED--GALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCC-CCCEEC--SSSEEETTTTEEE
T ss_pred cCCCCCCCCC-cceEec--CCeEECCcccccc
Confidence 4678999999 334444 5579999999754
No 54
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.87 E-value=0.0034 Score=44.35 Aligned_cols=31 Identities=32% Similarity=0.630 Sum_probs=28.6
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
.+||.|+. ..+|+++.+-.+.|..||.|+-+
T Consensus 37 VkCp~C~~-~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQGCFN-ITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECTTTCC-EEEEETTCSSCCCCSSSCCCCSC
T ss_pred EECCCCCC-eeEEEecCCcEEEccCCCCEeec
Confidence 57999998 68999999999999999999975
No 55
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=95.82 E-value=0.044 Score=48.74 Aligned_cols=71 Identities=15% Similarity=0.287 Sum_probs=53.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhC-C---CCCCCCHHHHHHHHHHHHHH-HhCCCCCHHHHHHHhcCCCHHHH
Q 021438 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQ-K---PLRGRNQEAIVAACLYIACR-QENKPRTVKEFCSVANGTTKKEI 184 (312)
Q Consensus 112 ~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~-~---~~~gr~~~~iaaAcly~acr-~~~~p~tl~dia~~~~~v~~~~i 184 (312)
....+|+.|+|++.+.+.|..+|+.+... + ...+. ....-.||||+||. .++...||-.+.+.+ +++..++
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~-~lsi~~F 80 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNI-EISVHKF 80 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHH-TCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHc-CCCHHHH
Confidence 45688999999999999999999998764 2 22333 44455556999997 467789999999998 6887665
No 56
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=95.74 E-value=0.056 Score=39.24 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=59.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhh-cc-------CCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHH
Q 021438 214 LRRFCSNLGMTNQAVKAAQEAVQKSED-LD-------IRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNV 285 (312)
Q Consensus 214 i~r~~~~L~l~~~v~~~A~~i~~~~~~-l~-------~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~ 285 (312)
|..+|-.||.++ +.+.|.+|++.-+. +. ...+|. .++||+|.+|+.+..+++...+...+|+++.-..+-
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~~l 83 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRL 83 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHH
Confidence 345666777776 66777777776443 21 223454 567999999999999999999999999999999888
Q ss_pred HHHHHhhhc
Q 021438 286 YKDLFPHLA 294 (312)
Q Consensus 286 ~kel~~~~~ 294 (312)
.+.+.....
T Consensus 84 ~~~~e~~~~ 92 (95)
T 3m03_A 84 CKQLEKIGQ 92 (95)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 887766543
No 57
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.64 E-value=0.0069 Score=38.73 Aligned_cols=28 Identities=21% Similarity=0.614 Sum_probs=21.4
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
..||.||+ +-+..+ ......|..||.+.
T Consensus 20 k~CP~CG~-~~fm~~-~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGP-GVFMAD-HGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCS-SCEEEE-CSSEEECSSSCCEE
T ss_pred ccCCCCCC-ceEEec-CCCeEECCCCCCEE
Confidence 57999998 444444 45889999999873
No 58
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=95.53 E-value=0.044 Score=53.55 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhc
Q 021438 107 IQAFKSISAMSDRLGLV-TTIKDRANEIYKKVED--QKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN 177 (312)
Q Consensus 107 ~~~~~~I~~~~~~L~Lp-~~v~~~A~~i~~~~~~--~~~~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~ 177 (312)
.-|..+|+.+|+.|+++ +.+.+.+..+|..... ..++++|..+.++.+|+|..||..+..+++++|.....
T Consensus 525 ~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr 598 (656)
T 4elj_A 525 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 598 (656)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 34789999999999887 4677777777766644 36779999999999999999999999999999998654
No 59
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=95.11 E-value=0.012 Score=38.43 Aligned_cols=28 Identities=21% Similarity=0.646 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCccc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLV 32 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~V 32 (312)
+..||.||+ .-+ .....+...|..||+.
T Consensus 18 ~~fCPkCG~-~~~-ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGP-GVF-LAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTT-TCC-CEECSSEEECTTTCCC
T ss_pred cccCcCCCC-cee-EeccCCEEECCCCCCE
Confidence 568999998 333 3344579999999997
No 60
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=94.39 E-value=0.034 Score=36.36 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEcC--CCcccc
Q 021438 2 ADSYCADCKRLTEVVFDHSAGDTICS--ECGLVL 33 (312)
Q Consensus 2 ~~~~Cp~Cg~~~~ii~D~~~G~~vC~--~CG~Vv 33 (312)
+...||.|++ .+..+. |+++|. +||...
T Consensus 9 ~iL~CP~c~~--~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHA--PLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCS--CEEEET--TEEEECSSSCCCEE
T ss_pred hheeCCCCCC--cceecC--CEEEcCCcCCCcEE
Confidence 3458999998 477764 999999 999874
No 61
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=93.42 E-value=1.4 Score=39.66 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHh----------CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH-----------Hhh-h-hc-----
Q 021438 149 EAIVAACLYIACRQE----------NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH-----------LEA-E-MG----- 200 (312)
Q Consensus 149 ~~iaaAcly~acr~~----------~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~-----------l~~-~-~~----- 200 (312)
.++.|.|+=++..-+ ...+++--|.+++ +++..++.+++..+.++ |+. + ..
T Consensus 105 ~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~-~i~afdf~KVIE~fVr~e~~LprelvkHL~~iEe~iLesla 183 (347)
T 2r7g_A 105 MSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVL-NLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLA 183 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHH-TCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhc-CCChHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 467777776655433 3367888899999 79999999987655443 321 0 00
Q ss_pred ---cc--cc-c----C----CCC-----------HHHHHHHHHhhcCCCH-HHHHHHHHHHHHhhh----ccCCCChHHH
Q 021438 201 ---QS--VE-M----G----TIH-----------ASDYLRRFCSNLGMTN-QAVKAAQEAVQKSED----LDIRRSPISV 250 (312)
Q Consensus 201 ---~~--~~-~----~----~~~-----------p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~~----l~~Gr~P~~i 250 (312)
.+ ++ + + ... ...=+..+|++|+++. ++.+.+|.+.+.+.. |..+|+-.-|
T Consensus 184 W~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQi 263 (347)
T 2r7g_A 184 WLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQI 263 (347)
T ss_dssp GSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHH
T ss_pred hccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHH
Confidence 00 00 0 0 000 1122566788887654 567778887777653 8899999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhC
Q 021438 251 AAAVIYIITQLSNDTKPLKEISIVTR 276 (312)
Q Consensus 251 aaAaiyla~~~~~~~~~~~~Ia~~~~ 276 (312)
.-.|||..|+..+..++.++|=+.-.
T Consensus 264 ilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 264 MMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999998899998876543
No 62
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=93.22 E-value=0.53 Score=45.99 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHh-CCC----CCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHH
Q 021438 111 KSISAMSDRLGLVTTIKDRANEIYKKVED-QKP----LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184 (312)
Q Consensus 111 ~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~-~~~----~~gr~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i 184 (312)
.....+|..|++++.+.++|.+.|..+.. .+. +.| ....+.|+.+|.||+.+|...||-.+.+.+ +++..++
T Consensus 6 ~~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~-~lsl~~F 82 (656)
T 4elj_A 6 PDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNI-EISVHKF 82 (656)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHHHHHHH-TCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHHHHHHh-cCCHHHH
Confidence 34678899999999999999999999974 222 233 455667777888888899999999999988 6886544
No 63
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=93.03 E-value=0.045 Score=39.93 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCceeeeCC---------------------------CCceEcCCCcccc
Q 021438 1 MADSYCADCKRLTEVVFDHS---------------------------AGDTICSECGLVL 33 (312)
Q Consensus 1 ~~~~~Cp~Cg~~~~ii~D~~---------------------------~G~~vC~~CG~Vv 33 (312)
|+...||.|+. .+..+.. +|.++|..||...
T Consensus 6 LdILaCP~cK~--pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 6 LHLLCSPDTRQ--PLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVF 63 (97)
T ss_dssp CSSCCCCTTSS--CCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEE
T ss_pred hhheECCCCCC--cccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCc
Confidence 45678999997 3555544 7899999999874
No 64
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=93.00 E-value=0.054 Score=41.48 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCceeee--CCCCceEcCCCccccc
Q 021438 1 MADSYCADCKRLTEVVFD--HSAGDTICSECGLVLE 34 (312)
Q Consensus 1 ~~~~~Cp~Cg~~~~ii~D--~~~G~~vC~~CG~Vv~ 34 (312)
|.+..||+||+--.+..| ...+.+.|..||+...
T Consensus 2 ~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 567899999983233334 3456799999999764
No 65
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=92.90 E-value=2.7 Score=36.91 Aligned_cols=105 Identities=9% Similarity=0.035 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhC--CC-CCCCCHHHHHHHHHHHHHHH-hCCCCCHHHHHHHhcCCCHHHH
Q 021438 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ--KP-LRGRNQEAIVAACLYIACRQ-ENKPRTVKEFCSVANGTTKKEI 184 (312)
Q Consensus 109 ~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~--~~-~~gr~~~~iaaAcly~acr~-~~~p~tl~dia~~~~~v~~~~i 184 (312)
..++|.++...-+++..+.-.|..|..++... +. +...+..-+..+|+.+|.|. .....+-+..+.+. |++.+++
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg-Gisl~EL 155 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG-GVRCHEL 155 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH-TSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc-CcCHHHH
Confidence 45778888888899998888888888888663 22 23456777888889999996 45668889999998 8999999
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhc
Q 021438 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNL 221 (312)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L 221 (312)
.+..+.+...++. ++ .+++++|...+.+.+
T Consensus 156 N~LE~eFL~lLdf------~L-~V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 156 NILENDFLKRVNY------RI-IPRDHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHTTTT------CC-SCCTTHHHHHHHHSC
T ss_pred HHHHHHHHHHcCC------ce-eeCHHHHHHHHHHHh
Confidence 9999999988876 33 244566665555443
No 66
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=92.34 E-value=0.11 Score=36.39 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.+.+.+|||+.+|+|+.||+...+.|.+.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 688999999999999999999998888774
No 67
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=92.26 E-value=0.06 Score=31.76 Aligned_cols=28 Identities=21% Similarity=0.629 Sum_probs=20.3
Q ss_pred CCCCCCCC-CceeeeCCCCceEcCCCccc
Q 021438 5 YCADCKRL-TEVVFDHSAGDTICSECGLV 32 (312)
Q Consensus 5 ~Cp~Cg~~-~~ii~D~~~G~~vC~~CG~V 32 (312)
.||.|+++ +.++.+...-.+-|..||..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 69999995 34555544445779999986
No 68
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.26 E-value=0.1 Score=39.37 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCceeeeCCCC----ceEcCCCccccc
Q 021438 2 ADSYCADCKRLTEVVFDHSAG----DTICSECGLVLE 34 (312)
Q Consensus 2 ~~~~Cp~Cg~~~~ii~D~~~G----~~vC~~CG~Vv~ 34 (312)
.|..||+||+- +......| .++|..||++..
T Consensus 3 ~m~FCp~Cgn~--L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 3 NFQYCIECNNM--LYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCCSSSCCC--CEECCCTTTCCCCEECSSSCCEEC
T ss_pred cceeCcCCCCE--eeEcccCCCCeeEEECCCCCCeEE
Confidence 46799999983 33333322 699999999853
No 69
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=91.59 E-value=0.055 Score=33.77 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCceeeeCCCCc----------eEcCCCcc
Q 021438 1 MADSYCADCKRLTEVVFDHSAGD----------TICSECGL 31 (312)
Q Consensus 1 ~~~~~Cp~Cg~~~~ii~D~~~G~----------~vC~~CG~ 31 (312)
|....|+.||- ++|++.|+ .+|..||.
T Consensus 2 m~~y~C~vCGy----vyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGY----EYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCC----EECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCe----EEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 44556777774 56655553 36666664
No 70
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=91.53 E-value=0.11 Score=44.83 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~V 32 (312)
..||.||+...+..+ ..|...|.+||.-
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred CcCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 579999984455555 4688999999975
No 71
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=91.16 E-value=0.21 Score=32.53 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=27.6
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
..+.+|||+.+|+|+.||+.+.+.+.+.+..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 4689999999999999999999999887654
No 72
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=90.92 E-value=0.16 Score=33.10 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCCCCCCCCCceeeeC------CCC---ceEcCCCcccccC
Q 021438 4 SYCADCKRLTEVVFDH------SAG---DTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~------~~G---~~vC~~CG~Vv~e 35 (312)
..||.||. ....+.. +++ .++|.+||....+
T Consensus 16 ~~Cp~Cg~-~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGN-DTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCC-SEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCC-CEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 47999998 5554432 233 3899999987543
No 73
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.68 E-value=0.14 Score=36.13 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccccCc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e~ 36 (312)
...||.||+ .. +.....|-.-|..||.++...
T Consensus 35 ky~CpfCGk-~~-vkR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 35 KHTCPVCGR-KA-VKRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp CBCCSSSCS-SC-EEEEETTEEEETTTCCEEECC
T ss_pred ccCCCCCCC-ce-eEecCcCeEEcCCCCCEEeCC
Confidence 457999998 45 455678999999999998654
No 74
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=90.58 E-value=0.11 Score=35.53 Aligned_cols=28 Identities=25% Similarity=0.697 Sum_probs=18.1
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcc-ccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGL-VLE 34 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~-Vv~ 34 (312)
..|++||.. +.. .....+.|..||. ||-
T Consensus 29 Y~C~~CG~~--~e~-~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 29 YICAECSSK--LSL-SRTDAVRCKDCGHRILL 57 (70)
T ss_dssp EECSSSCCE--ECC-CTTSTTCCSSSCCCCCB
T ss_pred EECCCCCCc--cee-CCCCCccCCCCCceEeE
Confidence 479999973 222 2344567999998 653
No 75
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=90.45 E-value=0.12 Score=33.43 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCceeeeCCCC
Q 021438 1 MADSYCADCKRLTEVVFDHSAG 22 (312)
Q Consensus 1 ~~~~~Cp~Cg~~~~ii~D~~~G 22 (312)
|....|+.||- |+|+..|
T Consensus 1 m~~y~C~vCGy----vYd~~~G 18 (54)
T 4rxn_A 1 MKKYTCTVCGY----IYDPEDG 18 (54)
T ss_dssp CCCEEETTTCC----EECTTTC
T ss_pred CCceECCCCCe----EECCCcC
Confidence 45556666664 5666555
No 76
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=90.42 E-value=0.16 Score=34.77 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccccCc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e~ 36 (312)
...||.||. .. +.....|-.-|..||.++...
T Consensus 26 ky~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 26 RYDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp CBCCSSCCS-SC-BSBCSSSCBCCSSSCCCCCCS
T ss_pred CccCCCCCC-ce-eEecCCCeEECCCCCCEEeCC
Confidence 457999998 44 455778999999999998653
No 77
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=90.30 E-value=2.8 Score=34.55 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhh--h--c-cCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHH
Q 021438 212 DYLRRFCSNLGMTNQAVKAAQEAVQKSE--D--L-DIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 212 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~--~--l-~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
.-+.++-.+-.+++.+...|.++++.-- + . .-=.+|.-+||||+.+|++-.+.++|+.|+- ...-+-.-|.-|-
T Consensus 17 nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r-~lD~sL~Dvelrr 95 (260)
T 3h4c_A 17 NCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR-CLDSSLGDVELRR 95 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH-HHCTTCCCHHHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH-HHhhhhhHHHHHH
Confidence 4566777777899999999999988632 1 1 1124699999999999999999999986652 2223333444444
Q ss_pred HHHHh
Q 021438 287 KDLFP 291 (312)
Q Consensus 287 kel~~ 291 (312)
-||.+
T Consensus 96 ~Eiv~ 100 (260)
T 3h4c_A 96 ADIVR 100 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 78
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=90.06 E-value=0.15 Score=37.51 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccC
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARII 297 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~ 297 (312)
+-..||+|||+.+|+|.+||.+. +.....+..-+
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~ 89 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRG-SNSLKAAPVEL 89 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHH
T ss_pred cCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHH
Confidence 34599999999999999999977 54445444433
No 79
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=90.05 E-value=0.12 Score=33.16 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q 021438 1 MADSYCADCK 10 (312)
Q Consensus 1 ~~~~~Cp~Cg 10 (312)
|....|+.||
T Consensus 1 m~~y~C~~CG 10 (52)
T 1e8j_A 1 MDIYVCTVCG 10 (52)
T ss_dssp CCCEECSSSC
T ss_pred CCcEEeCCCC
Confidence 3344455555
No 80
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=90.00 E-value=1.5 Score=35.15 Aligned_cols=111 Identities=11% Similarity=0.139 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhh-c-------cccccC-CCCHHHHHHHHH
Q 021438 150 AIVAACLYIACRQENKPRTVKEFCSVANG--TTKKEIGRAKEFIVKHLEAEM-G-------QSVEMG-TIHASDYLRRFC 218 (312)
Q Consensus 150 ~iaaAcly~acr~~~~p~tl~dia~~~~~--v~~~~i~~~~~~l~~~l~~~~-~-------~~~~~~-~~~p~~~i~r~~ 218 (312)
.++=|.||++ +.|.++.+++.++ + ++..++...+..|...+.... + ....+. ..+-..++.++.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~-~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~ 84 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQIT-AHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLL 84 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHh-CcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHh
Confidence 4566777765 7899999999999 8 999999999999988775211 0 000000 112233444433
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhccCCCChHHHHHHHH-HHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 219 SNLGMTNQAVKAAQEAVQKSEDLDIRRSPISVAAAVI-YIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 219 ~~L~l~~~v~~~A~~i~~~~~~l~~Gr~P~~iaaAai-yla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
. .+.|..+.-|++ -||.-.+..++|..||+++.|++ +.+..++|.+.
T Consensus 85 ~------------------------~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~---~~~~v~~L~e~ 132 (162)
T 1t6s_A 85 A------------------------PVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS---PDYSIDRLLAR 132 (162)
T ss_dssp S------------------------CHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC---CCSHHHHHHHT
T ss_pred c------------------------ccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC---HHHHHHHHHHC
Confidence 2 112333444443 34444556789999999999998 44566677664
No 81
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=89.91 E-value=0.66 Score=34.07 Aligned_cols=39 Identities=13% Similarity=0.303 Sum_probs=30.6
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhhhc-ccCCcc
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLA-RIIPDW 300 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~-~~~p~~ 300 (312)
+-..++|.|||+.+|+|..+|.+..++-.+... ..+|+.
T Consensus 31 Yv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~~~~~P~g 70 (101)
T 2w7n_A 31 LVDGKPQATFATSLGLTRGAVSQAVHRVWAAFEDKNLPEG 70 (101)
T ss_dssp HTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCCCTT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCCC
Confidence 456789999999999999999988887776643 245543
No 82
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=89.86 E-value=0.47 Score=33.16 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
...+.+|||+.+|+|+.||+++.+.+++.+..
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 34789999999999999999999999887754
No 83
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=89.85 E-value=0.18 Score=36.18 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
...||.||+ .. +.....|-.-|..||.++..
T Consensus 36 ky~CpfCgk-~~-vkR~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 36 KYFCEFCGK-FA-VKRKAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp CBCCTTTCS-SC-BEEEETTEEECSSSCCEEEC
T ss_pred cccCcccCC-Ce-eEecCcceEEcCCCCCEEeC
Confidence 357999998 44 45567899999999999764
No 84
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=89.84 E-value=0.45 Score=31.80 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccC
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLARII 297 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~ 297 (312)
...|.+|||+..|+|+.||+++.....+.+...+
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998888877654
No 85
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=89.79 E-value=0.49 Score=32.72 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 155 CLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 155 cly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
-|+-+.+..|-|....||+..+ |++.+++.++++.|++.-.+
T Consensus 23 kVLe~LkeaG~PlkageIae~~-GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKEC-QAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHH-TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHcCCc
Confidence 4667889999999999999999 89999999999999987654
No 86
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=89.79 E-value=0.15 Score=35.02 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccccCc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e~ 36 (312)
...||.||. ..+ .-...|-..|..||.++.-.
T Consensus 27 ky~C~fCgk-~~v-kR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 27 KYKCPVCGF-PKL-KRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred CccCCCCCC-cee-EEEEeEEEECCCCCcEEECC
Confidence 457999998 444 44568999999999998654
No 87
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=89.78 E-value=0.15 Score=38.25 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccccCc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e~ 36 (312)
...||.||. ..+ .-...|-.-|..||.++.-.
T Consensus 60 kytCPfCGk-~~v-KR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 60 DHACPNCGE-DRV-DRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp CEECSSSCC-EEE-EEEETTEEEETTTCCEEECC
T ss_pred CCcCCCCCC-cee-EecCceeEECCCCCCEEECC
Confidence 357999998 444 44568999999999997643
No 88
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=89.47 E-value=0.19 Score=36.09 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
...||.||. .. +.....|-.-|..||.++..
T Consensus 36 ky~CpfCgk-~~-vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 36 RYDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp CCCCSSSCS-SC-CEEEETTEEECTTTCCEEEC
T ss_pred CCcCCCCCC-ce-eeecccceEEcCCCCCEEeC
Confidence 457999998 44 45567899999999999764
No 89
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=89.16 E-value=0.41 Score=34.29 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
..+.+|||+.+|+|+.||+.+.+.+++.++.
T Consensus 44 G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 44 GFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4679999999999999999999999987753
No 90
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=89.03 E-value=0.61 Score=31.36 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=27.7
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
..+.++||+.+|+|+.||+.+.+.+.+.+..
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4589999999999999999999999887654
No 91
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=88.91 E-value=0.19 Score=30.69 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDL 289 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel 289 (312)
..+.++||+.+|+|..||.+.++..
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 4689999999999999999887654
No 92
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=88.63 E-value=0.21 Score=36.53 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
...||.||. .. +.....|-.-|..||.++..
T Consensus 36 ky~CpfCgk-~~-vKR~a~GIW~C~kCg~~~AG 66 (103)
T 4a17_Y 36 KYGCPFCGK-VA-VKRAAVGIWKCKPCKKIIAG 66 (103)
T ss_dssp CEECTTTCC-EE-EEEEETTEEEETTTTEEEEC
T ss_pred CCCCCCCCC-ce-eeecCcceEEcCCCCCEEeC
Confidence 357999998 44 55567899999999999764
No 93
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=88.58 E-value=3.1 Score=35.69 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=64.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cchhHHHHH
Q 021438 211 SDYLRRFCSNLGMTNQAVKAAQEAVQKSED--LDIRRSPISVAAAVIYIITQLSND-TKPLKEISIVTR--VAEGTIKNV 285 (312)
Q Consensus 211 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~--l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~--vs~~ti~~~ 285 (312)
.+++..++.++++++++.-.|..++++-.. -.......-++++|+++|++.... +.+.++++..++ .+...|.+-
T Consensus 53 vdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~m 132 (252)
T 1f5q_B 53 TTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTL 132 (252)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 467888888999999999999999888554 334567888999999999998764 566888877654 566677766
Q ss_pred HHHHHhhhc
Q 021438 286 YKDLFPHLA 294 (312)
Q Consensus 286 ~kel~~~~~ 294 (312)
=+.|+..++
T Consensus 133 E~~IL~~L~ 141 (252)
T 1f5q_B 133 EVKSLDTLS 141 (252)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 666666654
No 94
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=88.44 E-value=0.53 Score=31.28 Aligned_cols=34 Identities=15% Similarity=0.002 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccC
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLARII 297 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~ 297 (312)
...+.++||+..|+|+.||+++.+...+.+...+
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999998888877655
No 95
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=88.22 E-value=2.3 Score=37.65 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=50.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhc-----cCCCChHHHHHHHHHHHHHhc-CCCCCHHHHHHHhCcchhHH
Q 021438 215 RRFCSNLGMTNQAVKAAQEAVQKSEDL-----DIRRSPISVAAAVIYIITQLS-NDTKPLKEISIVTRVAEGTI 282 (312)
Q Consensus 215 ~r~~~~L~l~~~v~~~A~~i~~~~~~l-----~~Gr~P~~iaaAaiyla~~~~-~~~~~~~~Ia~~~~vs~~ti 282 (312)
..+|..|++++.+...||++.+.+..+ .+--...-.-.||||.|+.-. |..+++.+|-+.++++....
T Consensus 7 ~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~F 80 (304)
T 2qdj_A 7 TALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF 80 (304)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHH
Confidence 568999999999999999999998763 122224444555699999754 56789999999888876543
No 96
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=87.97 E-value=0.77 Score=31.36 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
...+.+|||+.+|+|+.||+.+.+.+.+.+..
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999887654
No 97
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=87.68 E-value=0.31 Score=37.76 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCceeeeC--CCCceEcCCCcccc
Q 021438 2 ADSYCADCKRLTEVVFDH--SAGDTICSECGLVL 33 (312)
Q Consensus 2 ~~~~Cp~Cg~~~~ii~D~--~~G~~vC~~CG~Vv 33 (312)
.+..||+||+---+..|. ....++|..||++.
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 357899999821112222 12359999999975
No 98
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=87.61 E-value=0.31 Score=39.48 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
..||.|++. ++ +...|...|..||.. ++
T Consensus 43 ~ACp~CnKK--V~-~~~~g~~~CekC~~~-~~ 70 (172)
T 3u50_C 43 YRCTCQGKS--VL-KYHGDSFFCESCQQF-IN 70 (172)
T ss_dssp EECTTSCCC--EE-EETTTEEEETTTTEE-CC
T ss_pred hhchhhCCE--ee-eCCCCeEECCCCCCC-CC
Confidence 369999983 44 668899999999998 53
No 99
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=87.40 E-value=0.17 Score=36.01 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=22.9
Q ss_pred CCCCCCCCCC--ceeeeC--CCCceEcCCCcccccC
Q 021438 4 SYCADCKRLT--EVVFDH--SAGDTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~Cg~~~--~ii~D~--~~G~~vC~~CG~Vv~e 35 (312)
..||.|+... .+..|. ..|.+.|..||.-.+.
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 5799999853 334443 4678999999976543
No 100
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=87.19 E-value=1.4 Score=40.57 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=54.3
Q ss_pred HHHHHhhcCCCH-HHHHHHHHHHHHhhh----ccCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHH
Q 021438 214 LRRFCSNLGMTN-QAVKAAQEAVQKSED----LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIK 283 (312)
Q Consensus 214 i~r~~~~L~l~~-~v~~~A~~i~~~~~~----l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~ 283 (312)
|..+|++|+++. ++....|.+.+.+.. |..+|+-.-|.-.|||..|++.+..++.++|-..-..-+.+-+
T Consensus 286 l~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~qPqa~~ 360 (411)
T 4ell_A 286 LNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQ 360 (411)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTTSTTCCT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhCcCCCC
Confidence 456788898764 677778887777653 8889999999999999999999999999998775444433333
No 101
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=87.19 E-value=0.78 Score=32.35 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccC
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLARII 297 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~ 297 (312)
...|.+|||..+|+|+.||+++.......+...+
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999988888776654
No 102
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=87.18 E-value=0.45 Score=33.94 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccC
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLARII 297 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~ 297 (312)
...+.+|||+.+|+|+.||++++......+...+
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999988777765543
No 103
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=87.14 E-value=10 Score=33.20 Aligned_cols=91 Identities=9% Similarity=-0.003 Sum_probs=71.7
Q ss_pred ccCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh----c-cCCCChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhCc
Q 021438 204 EMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED----L-DIRRSPISVAAAVIYIITQLSND-TKPLKEISIVTRV 277 (312)
Q Consensus 204 ~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~----l-~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~v 277 (312)
..|.+.-.+|+.|+...-+++..+.-.|.-.+++... + .......-+-.+|+.+|++..++ ..+-+..|++.|+
T Consensus 71 ~~P~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGi 150 (293)
T 2pmi_B 71 IPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGV 150 (293)
T ss_dssp SCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTS
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCc
Confidence 3566677899999999989998887777666666553 2 24567888899999999998764 4668999999999
Q ss_pred chhHHHHHHHHHHhhhc
Q 021438 278 AEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 278 s~~ti~~~~kel~~~~~ 294 (312)
+...+..-=++++..++
T Consensus 151 sl~ELN~LE~eFL~lLd 167 (293)
T 2pmi_B 151 RCHELNILENDFLKRVN 167 (293)
T ss_dssp CHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99998877778777655
No 104
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=87.05 E-value=0.81 Score=30.95 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhc-ccC
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLA-RII 297 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~-~~~ 297 (312)
...|.+|||+.+|+|+.||+++.....+.+. ..+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~ 63 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLKYHES 63 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHh
Confidence 5789999999999999999999888877776 443
No 105
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=86.74 E-value=0.69 Score=33.28 Aligned_cols=31 Identities=29% Similarity=0.226 Sum_probs=27.8
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
..+.+|||+.+|+|+.||+++.+.+++.+..
T Consensus 42 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 42 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999999988754
No 106
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=86.01 E-value=0.68 Score=32.93 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
..+.+|||+.+|+|+.||+++.+.+++.+..
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4778999999999999999999999887654
No 107
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=85.59 E-value=0.25 Score=30.72 Aligned_cols=32 Identities=22% Similarity=0.575 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCC-ceeeeCCCCceEcCCCcccc
Q 021438 2 ADSYCADCKRLT-EVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 2 ~~~~Cp~Cg~~~-~ii~D~~~G~~vC~~CG~Vv 33 (312)
+...|.+|+... ..-..-.+|.++|..||+-.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 35 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYH 35 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHH
Confidence 346788998742 23333456788899998753
No 108
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=85.26 E-value=0.48 Score=27.72 Aligned_cols=26 Identities=27% Similarity=0.770 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGL 31 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~ 31 (312)
-.+|+.||..-. +.....|+++| ||.
T Consensus 6 fY~C~~CGnive-v~~~g~~~l~C--CG~ 31 (36)
T 1dxg_A 6 VYKCELCGQVVK-VLEEGGGTLVC--CGE 31 (36)
T ss_dssp EEECTTTCCEEE-EEECCSSCEEE--TTE
T ss_pred EEEcCCCCcEEE-EEeCCCcCEEe--CCc
Confidence 346777775211 22245566676 553
No 109
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=84.94 E-value=0.53 Score=32.72 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCceeeeC------CCCc---------eEcCCCccccc
Q 021438 3 DSYCADCKRLTEVVFDH------SAGD---------TICSECGLVLE 34 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~------~~G~---------~vC~~CG~Vv~ 34 (312)
.++||.||+ ..++.+. -.|. .+|..||.++-
T Consensus 2 ~m~Cp~Cg~-~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 2 HMKCPVCHQ-GEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp -CBCTTTSS-SBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEEC
T ss_pred ceECCCCCC-CeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEE
Confidence 478999997 3343221 1232 67999998753
No 110
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=84.83 E-value=0.64 Score=29.44 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhCcchhHHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
..++++||+.+|+|..||+++.+
T Consensus 31 g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 46899999999999999998764
No 111
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=84.57 E-value=0.96 Score=32.96 Aligned_cols=31 Identities=19% Similarity=0.036 Sum_probs=27.5
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
..+.+|||+.+++|+.||+.+.+.+++.++.
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4678999999999999999999999887654
No 112
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=84.54 E-value=0.78 Score=30.67 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.2
Q ss_pred CCHHHHHHHhCcchhHHHHHHH
Q 021438 266 KPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
+|++|||+.+|||..||.+.+.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4789999999999999997764
No 113
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=84.48 E-value=1.1 Score=31.33 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|..++..+||+.+|++..||+++...|.+.
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999774
No 114
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=84.25 E-value=0.5 Score=32.30 Aligned_cols=28 Identities=25% Similarity=0.561 Sum_probs=22.3
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
..|| ||.. .+.|...-..-|. ||.++.-
T Consensus 5 v~C~-C~~~--~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 5 FRCD-CGRA--LYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEET-TSCC--EEEETTCSEEEET-TTEEEEC
T ss_pred EECC-CCCE--EEEcCCCcEEECC-CCCeeee
Confidence 4699 9983 5667777889998 9999864
No 115
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=84.10 E-value=0.37 Score=31.19 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCceeeeCCCCc
Q 021438 1 MADSYCADCKRLTEVVFDHSAGD 23 (312)
Q Consensus 1 ~~~~~Cp~Cg~~~~ii~D~~~G~ 23 (312)
|....|+.||- ++|...|+
T Consensus 1 m~~y~C~~CGy----vYd~~~Gd 19 (55)
T 2v3b_B 1 MRKWQCVVCGF----IYDEALGL 19 (55)
T ss_dssp CCEEEETTTCC----EEETTTCB
T ss_pred CCcEEeCCCCe----EECCCcCC
Confidence 34445555553 35554443
No 116
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=83.95 E-value=0.85 Score=28.85 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCceeeeC-----CCC---ceEcCCCccc
Q 021438 3 DSYCADCKRLTEVVFDH-----SAG---DTICSECGLV 32 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~-----~~G---~~vC~~CG~V 32 (312)
...||.||....+.+.. ++| .++|.+||..
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 45899999854333321 223 3799999963
No 117
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.51 E-value=0.3 Score=31.08 Aligned_cols=23 Identities=26% Similarity=0.677 Sum_probs=19.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~V 32 (312)
..||.|++. ...|-.-|..||+.
T Consensus 15 ~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCE------ECTTCSSCSSSSSC
T ss_pred ccCCCCCCc------CCCCceecCCCCCc
Confidence 579999982 45799999999998
No 118
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=83.05 E-value=1.3 Score=30.59 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
...|..+||+.+|++..||+++.+.|.+.
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46889999999999999999999999764
No 119
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=82.90 E-value=1.7 Score=34.50 Aligned_cols=30 Identities=3% Similarity=0.027 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-+.|..+||+.+|+|+.|++++++.|.+.
T Consensus 15 ~~~~s~~~la~~lg~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 15 DSTLAVADLAKKVGLSTTPCWRRIQKMEED 44 (162)
T ss_dssp CSCSCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999885
No 120
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=82.81 E-value=11 Score=26.97 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=49.8
Q ss_pred CHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCCCChHHHH---HHHHHHHHHhcCCCCCHHHHHHHh-CcchhHHHH
Q 021438 209 HASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIRRSPISVA---AAVIYIITQLSNDTKPLKEISIVT-RVAEGTIKN 284 (312)
Q Consensus 209 ~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~l~~Gr~P~~ia---aAaiyla~~~~~~~~~~~~Ia~~~-~vs~~ti~~ 284 (312)
+++..+..+|+.+|++.+- |...++...++ --|.||+-.+.+ .|+.+|++.+ |....|+..
T Consensus 2 t~~~I~~~Va~~f~i~~~d-------------l~s~~R~~~i~~aRqiamyL~r~~t~--~Sl~~IG~~fggrdHsTV~h 66 (94)
T 1j1v_A 2 TIDNIQKTVAEYYKIKVAD-------------LLSKRRSRSVARPRQMAMALAKELTN--HSLPEIGDAFGGRDHTTVLH 66 (94)
T ss_dssp CHHHHHHHHHHHTTCCHHH-------------HHSCCCCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHTTSCCHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHH-------------HhCCCCCchhHHHHHHHHHHHHHHHC--cCHHHHHHHhCCCCHHHHHH
Confidence 4566677777777777532 11222222333 467899888865 5699999999 899999999
Q ss_pred HHHHHHhhhc
Q 021438 285 VYKDLFPHLA 294 (312)
Q Consensus 285 ~~kel~~~~~ 294 (312)
.++.+.+.+.
T Consensus 67 a~~ki~~~~~ 76 (94)
T 1j1v_A 67 ACRKIEQLRE 76 (94)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 121
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=82.32 E-value=1.8 Score=28.94 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+.+++..+||+.+|++..||.+..+.|.+.
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4456889999999999999999999999875
No 122
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=82.16 E-value=2.2 Score=29.40 Aligned_cols=29 Identities=14% Similarity=-0.036 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.+..|||+.+|+|..|+++..+.|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35899999999999999999999999875
No 123
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=81.71 E-value=1 Score=34.54 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=26.7
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +.+++|+.+|||..|||++|+.|...
T Consensus 35 G~~LPser~La~~~gVSr~tVReAl~~L~~e 65 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVSKAYQELERQ 65 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5667 58899999999999999999999774
No 124
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=81.63 E-value=1.4 Score=33.46 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=26.7
Q ss_pred CCCCC-HHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKP-LKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~-~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.+++ .+++|+.+|||..|+++.|+.|...
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~ 64 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45675 9999999999999999999999874
No 125
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=81.56 E-value=0.56 Score=31.97 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=5.1
Q ss_pred eEcCCCccccc
Q 021438 24 TICSECGLVLE 34 (312)
Q Consensus 24 ~vC~~CG~Vv~ 34 (312)
.+|..||+|.+
T Consensus 8 y~C~vCGyiYd 18 (70)
T 1dx8_A 8 YECEACGYIYE 18 (70)
T ss_dssp EEETTTCCEEC
T ss_pred EEeCCCCEEEc
Confidence 44444444443
No 126
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=81.49 E-value=0.49 Score=28.96 Aligned_cols=30 Identities=30% Similarity=0.762 Sum_probs=20.8
Q ss_pred CCCCCCCCCC-ceeeeCCCCceEcCCCcccc
Q 021438 4 SYCADCKRLT-EVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 4 ~~Cp~Cg~~~-~ii~D~~~G~~vC~~CG~Vv 33 (312)
..|-+|+... ..-..-.+|..+|..||.-.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 32 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFL 32 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHH
Confidence 4688999743 23344457889999999764
No 127
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=81.07 E-value=1.7 Score=30.48 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=31.2
Q ss_pred CCHHHHHHHhCcchhHHHHHHHHHHhh--hcc---cCCcccccc
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKDLFPH--LAR---IIPDWFANE 304 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~kel~~~--~~~---~~p~~~~~~ 304 (312)
.+..+||+.+|+|..+|+++.+.|.+. +.. --|.|+...
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~ 74 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMTT 74 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEESCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcceecc
Confidence 889999999999999999999999774 211 237887754
No 128
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=80.98 E-value=2.3 Score=31.03 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=28.2
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.|.+++..+||+.+|+|.+|++++++.|.+.
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4667899999999999999999999999874
No 129
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=80.59 E-value=0.64 Score=30.60 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEcCCCccccc
Q 021438 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 2 ~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
-+..||.||. -++ ..+|..||....
T Consensus 5 ~mr~C~~Cgv-YTL-------k~~CP~CG~~T~ 29 (60)
T 2apo_B 5 RMKKCPKCGL-YTL-------KEICPKCGEKTV 29 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCSSSCSBCB
T ss_pred hceeCCCCCC-Eec-------cccCcCCCCcCC
Confidence 4678999997 333 567999998854
No 130
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=80.52 E-value=5.7 Score=29.32 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=37.1
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHH
Q 021438 213 YLRRFCSNL-GMTNQAVKAAQEAVQKSEDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 213 ~i~r~~~~L-~l~~~v~~~A~~i~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
++.++-..+ +|++.-.+.|..|++. |..++ ..+..+||+.+|||+.||-+-+|.
T Consensus 8 i~~~i~~~~~~ls~~e~~ia~yil~~---------~~~~~-------------~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 8 GLAIIQSMXHXLPPSERKLADYILAH---------PHXAI-------------ESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHC---------HHHHH-------------TCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHC---------hHHHH-------------hcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444333 4777777777777754 44333 478999999999999999976543
No 131
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=80.50 E-value=0.59 Score=32.76 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=12.3
Q ss_pred CCceEcCCCcccccCc
Q 021438 21 AGDTICSECGLVLEAY 36 (312)
Q Consensus 21 ~G~~vC~~CG~Vv~e~ 36 (312)
...++|..||+|.++.
T Consensus 25 m~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEA 40 (81)
T ss_dssp CCEEEETTTCCEEETT
T ss_pred cceEEeCCCCEEEcCC
Confidence 3468999999998763
No 132
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=80.10 E-value=2.5 Score=32.93 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-..+..+||+.+|+|+.|++++.+.|.+.
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 356899999999999999999999999885
No 133
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.09 E-value=1.4 Score=35.02 Aligned_cols=29 Identities=21% Similarity=0.599 Sum_probs=20.8
Q ss_pred CCCCCCCCC-CceeeeCCC--CceEcCCCccc
Q 021438 4 SYCADCKRL-TEVVFDHSA--GDTICSECGLV 32 (312)
Q Consensus 4 ~~Cp~Cg~~-~~ii~D~~~--G~~vC~~CG~V 32 (312)
..|+.|+++ +.++.|... =.+.|..||..
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCC
Confidence 479999995 455554333 34789999987
No 134
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=79.97 E-value=2.5 Score=32.82 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-..+..+||+.+|+|+.|++++++.|.+.
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999875
No 135
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=79.82 E-value=2.5 Score=32.63 Aligned_cols=30 Identities=7% Similarity=0.206 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-..|..+||+.+|+|..|++++.+.|.+.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 356899999999999999999999999875
No 136
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=79.75 E-value=1.8 Score=36.34 Aligned_cols=112 Identities=13% Similarity=0.210 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhh-c-------cccccC-CCCHHHHHHHHHh
Q 021438 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM-G-------QSVEMG-TIHASDYLRRFCS 219 (312)
Q Consensus 149 ~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~-~-------~~~~~~-~~~p~~~i~r~~~ 219 (312)
..++=|.||++ +.|+++.+++.++ +++..++...+..|...+.... + ..+.+. ...-..||.++..
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~l-~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~ 91 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAAT-EQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLL 91 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhc
Confidence 35667778865 7899999999999 7999999999999988774211 0 000010 1122344444432
Q ss_pred hcCCCHHHHHHHHHHHHHhhhccCCCChHHHHHHHH-HHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 220 NLGMTNQAVKAAQEAVQKSEDLDIRRSPISVAAAVI-YIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 220 ~L~l~~~v~~~A~~i~~~~~~l~~Gr~P~~iaaAai-yla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.-.. ..+--|++ -|+...+..++|..+|+++.|++. .+..++|.+.
T Consensus 92 -----------------~~~~-------~~Ls~aaLEtLaiIAy~QPITR~eI~~irGv~~---~~~v~~Lle~ 138 (219)
T 2z99_A 92 -----------------DGAR-------TKLTRAALETLAVVAYRQPVTRARVSAVRGVNV---DAVMRTLLAR 138 (219)
T ss_dssp -----------------HHHS-------CCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCC---HHHHHHHHHT
T ss_pred -----------------cccc-------CccCHHHHHHHHHHHHcCCcCHHHHHHHHCCCH---HHHHHHHHHC
Confidence 1000 00111221 233333446899999999999986 4667777764
No 137
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=79.67 E-value=2.6 Score=32.81 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-..+..+||+.+|+|+.|++++++.|.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999885
No 138
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=79.58 E-value=2.5 Score=33.94 Aligned_cols=29 Identities=38% Similarity=0.497 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-..+..+||+.+|+|+.|++++++.|.+.
T Consensus 40 ~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 40 GKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999885
No 139
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=79.52 E-value=0.54 Score=31.67 Aligned_cols=32 Identities=28% Similarity=0.720 Sum_probs=21.5
Q ss_pred CCCCCCCCCCC-ceeeeCCCCceEcCCCccccc
Q 021438 3 DSYCADCKRLT-EVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 3 ~~~Cp~Cg~~~-~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
...|-+||... ..-..-.+|.++|..||+-..
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~ 41 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 41 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTEEECHHHHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHH
Confidence 45788998742 223334468899999998754
No 140
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=79.50 E-value=6.7 Score=28.82 Aligned_cols=53 Identities=21% Similarity=0.165 Sum_probs=35.2
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHH
Q 021438 214 LRRFCSNL-GMTNQAVKAAQEAVQKSEDLDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 214 i~r~~~~L-~l~~~v~~~A~~i~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
+.++-..+ +|++.-.+.|..|++. |..++ ..+..++|+.+|||++||-+-.|.
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~---------~~~~~-------------~~si~elA~~~~vS~aTv~Rf~kk 58 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNY---------PHKVV-------------NMTSQEIANQLETSSTSIIRLSKK 58 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHC---------HHHHT-------------TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhC---------HHHHH-------------HCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444443 4666666666666644 33322 578999999999999999976543
No 141
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=79.45 E-value=0.45 Score=32.52 Aligned_cols=29 Identities=17% Similarity=0.541 Sum_probs=14.8
Q ss_pred CCCCCCCCCCceeeeC---CCCceEcCCCcccc
Q 021438 4 SYCADCKRLTEVVFDH---SAGDTICSECGLVL 33 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~---~~G~~vC~~CG~Vv 33 (312)
..|-+|+...+-.+.. ..| ++|..||+-.
T Consensus 9 ~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~ 40 (71)
T 2kae_A 9 FQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQ 40 (71)
T ss_dssp CCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCC-ccchHHHHHH
Confidence 4566666533333332 334 6666666654
No 142
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=79.28 E-value=1.5 Score=32.64 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=26.5
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +.+++|+.+|||..||++.++.|...
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~al~~L~~~ 60 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSKAYQSLLDD 60 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4556 68999999999999999999999874
No 143
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=79.15 E-value=2.1 Score=29.65 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-.++..|+|+.++||+.|||.-..+|.+.
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~~ 43 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLESM 43 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46889999999999999999887777664
No 144
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=79.07 E-value=0.77 Score=28.19 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=20.3
Q ss_pred CCHHHHHHHhCcchhHHHHHHHH
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
.+..+||+.+|+|..||.+++++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 78999999999999999977653
No 145
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=78.80 E-value=1.3 Score=32.45 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=26.3
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|..+ +..++|+.+|||..||++.++.|.+.
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~~ 70 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLESA 70 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445 89999999999999999999999875
No 146
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=78.79 E-value=2.9 Score=32.38 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-..+..+||+.+|+|.+|++++.+.|.+.
T Consensus 15 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999885
No 147
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=78.42 E-value=1.1 Score=36.60 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=21.8
Q ss_pred CCCCC--CCCCCceeeeCCCCceEcCCCccccc
Q 021438 4 SYCAD--CKRLTEVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 4 ~~Cp~--Cg~~~~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
..||. |++. + .+...|.+.|..||...+
T Consensus 44 ~aC~~~~CnKK--v-~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 44 QACPTQDCNKK--V-IDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp EBCCSTTCCCB--C-EEETTTEEEETTTTEEES
T ss_pred CCCCchhcCCc--c-ccCCCCeEECCCCCCcCC
Confidence 36999 9983 4 456789999999997754
No 148
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=78.37 E-value=4 Score=26.34 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHh-----CcchhHHHHHHHHH
Q 021438 263 NDTKPLKEISIVT-----RVAEGTIKNVYKDL 289 (312)
Q Consensus 263 ~~~~~~~~Ia~~~-----~vs~~ti~~~~kel 289 (312)
+...+..||++.+ +||..||++..+++
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 4578999999999 99999999887754
No 149
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=78.37 E-value=3.1 Score=31.77 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-..+..+||+.+|+|..|++++++.|.+.
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456799999999999999999999999875
No 150
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=78.13 E-value=2.9 Score=32.91 Aligned_cols=30 Identities=17% Similarity=0.014 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-..+..+||+.+|+|..|++++.+.|.+.
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999885
No 151
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=77.75 E-value=3 Score=33.38 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-..|..+||+.+|+|+.|++++++.|.+.
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999875
No 152
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=77.23 E-value=2.8 Score=30.97 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=25.3
Q ss_pred HhcCCCCCHHHHHHHhCcchhHHHHHHHHHHh
Q 021438 260 QLSNDTKPLKEISIVTRVAEGTIKNVYKDLFP 291 (312)
Q Consensus 260 ~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~ 291 (312)
+++....|+++|++.+|+|..||.+.-|.|..
T Consensus 53 ~lL~~G~SyreIa~~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 53 KMLTDKRTYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCccHHHHHHHHHHHHc
Confidence 34434589999999999999999987666654
No 153
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=77.21 E-value=2.3 Score=32.48 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +.+++|+.+|||..||++.++.|...
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~~~ 55 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVEA 55 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4567 68999999999999999999999764
No 154
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=77.09 E-value=2.6 Score=31.34 Aligned_cols=32 Identities=19% Similarity=0.049 Sum_probs=27.2
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhhhccc
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPHLARI 296 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~ 296 (312)
..|.+|||+.+|+|+.||+++.+.....+...
T Consensus 38 g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 38 DYSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988777766543
No 155
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=77.06 E-value=1.8 Score=32.86 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=26.4
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +.+++|+.+|||..||++.++.|...
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 62 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAKAYKELEAQ 62 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4456 79999999999999999999999874
No 156
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=76.67 E-value=3.2 Score=36.71 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=27.5
Q ss_pred hcCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 261 LSNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 261 ~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+...++++|||+.+|||+.|||+-.+++.+.
T Consensus 17 ~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 17 YYEQDMTQAQIARELGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34566999999999999999999888888774
No 157
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=76.65 E-value=3.7 Score=32.56 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 253 Aaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.+|||..-.+.+++.++||+..++++..+++....|.+.
T Consensus 32 ~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 32 ITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4566666433456899999999999999999999999875
No 158
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=76.61 E-value=2.8 Score=35.16 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
...+.+|||+.+|+|+.||+.+.+.+++.++.
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999987754
No 159
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=76.60 E-value=1.8 Score=33.46 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccC
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLARII 297 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~ 297 (312)
...|.+|||+.+|+|+.||++++......+...+
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999988777766544
No 160
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=76.33 E-value=13 Score=30.90 Aligned_cols=29 Identities=24% Similarity=0.150 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 56899999999999999999999999885
No 161
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=76.26 E-value=3.6 Score=31.85 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-..+..+||+.+|+|..|++++.+.|.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999885
No 162
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=76.26 E-value=3.9 Score=30.34 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhccc
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLARI 296 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~ 296 (312)
...|.+|||+.+|+|+.||+++.+.....+...
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999888777766543
No 163
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=76.17 E-value=0.75 Score=32.71 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.4
Q ss_pred CCceEcCCCcccccCc
Q 021438 21 AGDTICSECGLVLEAY 36 (312)
Q Consensus 21 ~G~~vC~~CG~Vv~e~ 36 (312)
...++|..||+|.++.
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 4568999999998753
No 164
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=76.07 E-value=1.9 Score=28.93 Aligned_cols=22 Identities=14% Similarity=0.434 Sum_probs=19.0
Q ss_pred CCCHHHHHHHhCcchhHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..+++|||+.+|||..||.+.+
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 4689999999999999998653
No 165
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=76.02 E-value=3.8 Score=31.98 Aligned_cols=34 Identities=3% Similarity=0.175 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccC
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLARII 297 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~ 297 (312)
...+.+|||+.+|+|+.|+++++..-...+...+
T Consensus 108 ~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999987777776655
No 166
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=75.93 E-value=2.2 Score=30.75 Aligned_cols=28 Identities=29% Similarity=0.714 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 1 ~~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
|+ ..||.|+. ++.++ .|...|..|+.-+
T Consensus 31 M~-~~CP~Cq~--eL~~~--g~~~hC~~C~~~f 58 (101)
T 2jne_A 31 ME-LHCPQCQH--VLDQD--NGHARCRSCGEFI 58 (101)
T ss_dssp CC-CBCSSSCS--BEEEE--TTEEEETTTCCEE
T ss_pred cc-ccCccCCC--cceec--CCEEECccccchh
Confidence 55 68999997 46665 4566699998744
No 167
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=75.93 E-value=3.1 Score=29.71 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+...++.+||+.+|++.+|+.+..+.|.+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999774
No 168
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=75.90 E-value=50 Score=30.58 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhc
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~ 294 (312)
...|++|||+.+|+|..||+++.+.-...+.
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 6799999999999999999988876655554
No 169
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=75.52 E-value=4.8 Score=27.77 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 164 ~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
|.|.|++||++.+ |++..++.+-+..|.+.
T Consensus 22 g~~psv~EIa~~l-gvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 22 GAPVKTRDIADAA-GLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp TSCEEHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHH-CCCHHHHHHHHHHHHHC
Confidence 7999999999999 89999988887776653
No 170
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=75.39 E-value=2 Score=30.37 Aligned_cols=27 Identities=19% Similarity=0.747 Sum_probs=20.5
Q ss_pred CCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 5 YCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 5 ~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
.||.|+. .++.+.....+.|..||...
T Consensus 27 wCP~C~~--~~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSF--GFIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCC--CEECCCSCSCEECTTTCCEE
T ss_pred ECcCCCc--hheecCCCCceEeCCCCCcc
Confidence 5999997 35666666678999999875
No 171
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=75.30 E-value=4.2 Score=29.15 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.+..+|++.+|++.+|+..+.+.|.+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999774
No 172
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=75.30 E-value=1.2 Score=29.33 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=16.5
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCccccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
..||+||.. ..---+|.+||+-=+
T Consensus 31 ~~c~~cG~~-------~~pH~vc~~CG~Y~g 54 (60)
T 2zjr_Z 31 TECPQCHGK-------KLSHHICPNCGYYDG 54 (60)
T ss_dssp EECTTTCCE-------ECTTBCCTTTCBSSS
T ss_pred eECCCCCCE-------eCCceEcCCCCcCCC
Confidence 468888872 135678999997643
No 173
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=75.27 E-value=6 Score=31.33 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 147 NQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 147 ~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
+.+.-.-+.+|+|.+..+.|.+.++||+.. +++...+.+.+..|.+.
T Consensus 25 ~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~-~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 25 KGRYGLTITLELAKRIGDGPISLRSIAQDK-NLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHHTTTSCCBCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 344556677888876556789999999999 89999999999888753
No 174
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=75.25 E-value=3.3 Score=30.10 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHL 293 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~ 293 (312)
...|.+|||+.+|+|..||+++...-...+
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKL 67 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 568999999999999999998875544443
No 175
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=75.14 E-value=6.4 Score=29.57 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+...+.++||+..+++..++++.++.|.+.
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567899999999999999999999999884
No 176
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=75.05 E-value=4.1 Score=30.55 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCC-CCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 254 VIYIITQLSNDT-KPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 254 aiyla~~~~~~~-~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.||.+..-.+.+ +|+.+||+.++++.+|+.++.+.|.+.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344444444545 899999999999999999999999875
No 177
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=74.76 E-value=1.3 Score=33.65 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHH
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRA 187 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~ 187 (312)
...|..++|+.+ |++..+|.++
T Consensus 83 ~glsq~~la~~~-g~s~~~i~~~ 104 (133)
T 3o9x_A 83 LSLTQKEASEIF-GGGVNAFSRY 104 (133)
T ss_dssp TTCCHHHHHHHH-CSCTTHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHH
Confidence 456777777777 6777666665
No 178
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=74.75 E-value=2.6 Score=35.54 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
...+.+|||+.+|+|+.||+.+.+.+++.++.
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 35789999999999999999999999987753
No 179
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=74.57 E-value=2.3 Score=29.72 Aligned_cols=29 Identities=17% Similarity=0.471 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCCceeeeCCCCceEcCCCccccc
Q 021438 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 1 ~~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
|+ ..||.|+. .+..| .+...|..||.-+.
T Consensus 1 M~-~~CP~C~~--~l~~~--~~~~~C~~C~~~~~ 29 (81)
T 2jrp_A 1 ME-ITCPVCHH--ALERN--GDTAHCETCAKDFS 29 (81)
T ss_dssp CC-CCCSSSCS--CCEEC--SSEEECTTTCCEEE
T ss_pred CC-CCCCCCCC--ccccC--CCceECccccccCC
Confidence 66 78999997 35554 44556888887554
No 180
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=74.42 E-value=3.8 Score=29.11 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.+..+||+.+|++.+|+.++.+.|.+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46789999999999999999999999874
No 181
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=74.39 E-value=2.7 Score=35.33 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
...+.+|||+.+|+|+.||+.+.+.+++.++.
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 35789999999999999999999999987754
No 182
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=74.04 E-value=2.7 Score=31.65 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=24.7
Q ss_pred HHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHH
Q 021438 258 ITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLF 290 (312)
Q Consensus 258 a~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~ 290 (312)
+++++....|+++||+.+|+|..||.+.-+.|.
T Consensus 68 V~klL~~G~syreIA~~~g~S~aTIsRv~r~L~ 100 (119)
T 3kor_A 68 VAKMIKQGYTYATIEQESGASTATISRVKRSLQ 100 (119)
T ss_dssp HHHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 334443348999999999999999997655553
No 183
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=73.99 E-value=0.69 Score=30.78 Aligned_cols=31 Identities=32% Similarity=0.821 Sum_probs=19.0
Q ss_pred CCCCCCCCCCc-eeeeCCCCceEcCCCccccc
Q 021438 4 SYCADCKRLTE-VVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 4 ~~Cp~Cg~~~~-ii~D~~~G~~vC~~CG~Vv~ 34 (312)
..|-+||...+ +-..-..|.++|..||+-..
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~ 39 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYK 39 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHH
Confidence 46788886322 22334457777888887754
No 184
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=73.29 E-value=6.2 Score=26.15 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=27.7
Q ss_pred HHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 021438 161 RQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (312)
Q Consensus 161 r~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~ 193 (312)
+.++.|.+..||+..+ |++..++.+.++.|.+
T Consensus 20 ~~~~~~~s~~eLA~~l-glsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 20 SDDGGPVAIFQLVKKC-QVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHCSCEEHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHcCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3467889999999999 8999999999888764
No 185
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=73.25 E-value=5.1 Score=32.43 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+..++.+++|+.+|+|..||+++.+.|.+.
T Consensus 34 ~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~ 63 (187)
T 1j5y_A 34 KEPVSGAQLAEELSVSRQVIVQDIAYLRSL 63 (187)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345899999999999999999999999874
No 186
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=73.23 E-value=1 Score=32.65 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=25.3
Q ss_pred CCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
..+ +.+++|+.+|||..||++.++.|.+.
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~~ 62 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKSE 62 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTTS
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445 79999999999999999999988764
No 187
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=72.66 E-value=2.8 Score=33.62 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcccC
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLARII 297 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~~~ 297 (312)
...|.+|||+.+|+|+.|+++++....+.+...+
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999987777765544
No 188
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=72.58 E-value=6.9 Score=29.67 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=26.6
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.++.+||+.++++.+|+....+.|.+.
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7899999999999999999999999885
No 189
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=72.53 E-value=3.8 Score=31.94 Aligned_cols=39 Identities=5% Similarity=-0.020 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 253 Aaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.+|||.. .+...+.++||+..++++.++++.++.|.+.
T Consensus 19 ~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 19 ILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44556542 3456889999999999999999999999884
No 190
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=72.49 E-value=2.6 Score=36.59 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCccccc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
...||.||+. .......-..+|.+||.+.-
T Consensus 107 ~~fC~~CG~~--~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 107 HKYCGYCGHE--MYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp TSBCTTTCCB--EEECSSSSCEEESSSSCEEC
T ss_pred CCccccCCCc--CccCCCceeeeCCCCCCEec
Confidence 4689999983 33334445689999998754
No 191
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=72.29 E-value=1.1 Score=29.52 Aligned_cols=23 Identities=35% Similarity=0.934 Sum_probs=15.5
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
..||+||.. . .---||.+||+-=
T Consensus 31 ~~c~~cGe~-~------~~H~vc~~CG~Y~ 53 (60)
T 3v2d_5 31 VPCPECKAM-K------PPHTVCPECGYYA 53 (60)
T ss_dssp EECTTTCCE-E------CTTSCCTTTCEET
T ss_pred eECCCCCCe-e------cceEEcCCCCcCC
Confidence 468888872 1 2456799999653
No 192
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=72.10 E-value=3.5 Score=32.00 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 253 Aaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.+|||..-.+.+++.++||+..++++.++++.++.|.+.
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4455665322346889999999999999999999999875
No 193
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=71.91 E-value=8.4 Score=27.07 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHhCcchhH-HHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGT-IKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~t-i~~~~kel~~~ 292 (312)
.+...++.+||+.++++.+| +....+.|.+.
T Consensus 27 ~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 27 KGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp TTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 44479999999999999999 99999999875
No 194
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=71.88 E-value=3.1 Score=31.51 Aligned_cols=32 Identities=22% Similarity=0.561 Sum_probs=26.6
Q ss_pred CCCCceEcCCCcccc--cCcccccccccccccCC
Q 021438 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (312)
Q Consensus 19 ~~~G~~vC~~CG~Vv--~e~~id~~~ewr~f~~~ 50 (312)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 16 ~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~p 49 (124)
T 2kao_A 16 FEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp CCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSCC
T ss_pred CCCEEEEeCCCCCccccCcccccCCCCChhhCcc
Confidence 478999999999987 44567889999999853
No 195
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=71.63 E-value=2.7 Score=29.81 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-.++..|+|+.++||+.|||.=..+|.+.
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le~~ 43 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERMEAM 43 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45789999999999999999877777664
No 196
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=71.29 E-value=4.6 Score=28.39 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.+.++.+||+.+|++.+|+.+..+.|.+.
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L~~~ 65 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARMRDE 65 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 446889999999999999999999999763
No 197
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=71.29 E-value=26 Score=25.31 Aligned_cols=74 Identities=12% Similarity=0.209 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCCCCh-HHHH-HHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHH
Q 021438 207 TIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSEDLDIRRSP-ISVA-AAVIYIITQLSNDTKPLKEISIVTRVAEGTIKN 284 (312)
Q Consensus 207 ~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~l~~Gr~P-~~ia-aAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~ 284 (312)
.++++..+..+|..+|++.+-. ...+|.. .+.| --|.||+-.+.+ .|+.+|++.+|-..+|+..
T Consensus 4 ~it~~~I~~~Va~~f~v~~~dl------------~s~~R~~~i~~aRqiAmYL~r~~t~--~Sl~~IG~~fgRDHsTV~h 69 (101)
T 3pvv_A 4 MISAATIMAATAEYFDTTVEEL------------RGPGKTRALAQSRQIAMYLCRELTD--LSLPKIGQAFGRDHTTVMY 69 (101)
T ss_dssp -CCHHHHHHHHHHHTTCCHHHH------------HSSCCCHHHHHHHHHHHHHHHHHCC--CCHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCHHHH------------hCCCCCchhhHHHHHHHHHHHHHhC--CCHHHHHHHHCCCHHHHHH
Confidence 4568888888889888886421 1123332 2223 467899888864 6799999999999999999
Q ss_pred HHHHHHhhhc
Q 021438 285 VYKDLFPHLA 294 (312)
Q Consensus 285 ~~kel~~~~~ 294 (312)
.++.+.+.+.
T Consensus 70 a~~ki~~~~~ 79 (101)
T 3pvv_A 70 AQRKILSEMA 79 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 198
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=70.92 E-value=5.8 Score=28.07 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.+..+||+.+++|..|+++..+.|.+.
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35889999999999999999999999875
No 199
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=70.90 E-value=15 Score=27.29 Aligned_cols=29 Identities=3% Similarity=0.001 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++++.+||+.++++..|+...++.|.+.
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 37899999999999999999999999885
No 200
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=70.49 E-value=16 Score=30.20 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 56889999999999999999999999875
No 201
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=70.41 E-value=20 Score=29.23 Aligned_cols=29 Identities=3% Similarity=0.045 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999874
No 202
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=70.34 E-value=14 Score=26.38 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 154 ACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 154 Acly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
-+.|++-+ -+..|+.+|+..+.|.+-.++..+++++.+.+..
T Consensus 36 iamyL~r~--~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 36 MAMALAKE--LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp HHHHHHHH--HSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 45677644 4678999999999569999999999999988764
No 203
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=70.29 E-value=11 Score=28.43 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=25.5
Q ss_pred CCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+++.+||+.++++.+|+....+.|.+.
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~ 78 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKE 78 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999874
No 204
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=70.14 E-value=6.4 Score=32.05 Aligned_cols=32 Identities=13% Similarity=-0.013 Sum_probs=28.6
Q ss_pred hcCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 261 LSNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 261 ~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
..|.+.|++|||+.+|++..|+..+.+.|.+.
T Consensus 20 ~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRITPRGALLHLIALEKK 51 (196)
T ss_dssp HHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC
Confidence 45788999999999999999999999999764
No 205
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=69.99 E-value=3.9 Score=35.21 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
..++.+|||+.+|+|+.|++.+.+.+++.++.
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 36789999999999999999999999998764
No 206
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=69.83 E-value=2.5 Score=28.05 Aligned_cols=27 Identities=30% Similarity=0.636 Sum_probs=16.0
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
..|.+||...+ .+ ....+-|..||.=|
T Consensus 22 Y~C~~Cg~~~~--l~-~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNT--IQ-AKEVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCBCC--CC-SSSCCCCSSSCCCC
T ss_pred EECCCCCCeee--cC-CCCceECCCCCcEE
Confidence 46888886322 22 23557788887643
No 207
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=69.82 E-value=1.4 Score=28.93 Aligned_cols=25 Identities=24% Similarity=0.585 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEcCCCccccc
Q 021438 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 2 ~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
-+..|+.||. -.+ ..+|..||....
T Consensus 4 ~mr~C~~Cg~-YTL-------k~~CP~CG~~t~ 28 (60)
T 2aus_D 4 RIRKCPKCGR-YTL-------KETCPVCGEKTK 28 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCTTTCSBCE
T ss_pred cceECCCCCC-EEc-------cccCcCCCCccC
Confidence 4678999997 222 557999997753
No 208
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=69.63 E-value=3.5 Score=36.55 Aligned_cols=31 Identities=16% Similarity=0.428 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCceeeeCCCC-----------ceEcCCCcccc
Q 021438 3 DSYCADCKRLTEVVFDHSAG-----------DTICSECGLVL 33 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G-----------~~vC~~CG~Vv 33 (312)
...||+||+...+.+=.-+| -.+|..||.-+
T Consensus 222 R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred CcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 45799999754443322222 37899999776
No 209
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=69.58 E-value=2 Score=27.29 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=7.0
Q ss_pred eEcCCCcccccC
Q 021438 24 TICSECGLVLEA 35 (312)
Q Consensus 24 ~vC~~CG~Vv~e 35 (312)
.+|..||+|.++
T Consensus 3 ~~C~~CGyvYd~ 14 (52)
T 1yk4_A 3 LSCKICGYIYDE 14 (52)
T ss_dssp EEESSSSCEEET
T ss_pred EEeCCCCeEECC
Confidence 456666666554
No 210
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=69.49 E-value=1.7 Score=34.87 Aligned_cols=29 Identities=21% Similarity=0.639 Sum_probs=20.5
Q ss_pred CCCCCCCCC-CceeeeCCCC--ceEcCCCccc
Q 021438 4 SYCADCKRL-TEVVFDHSAG--DTICSECGLV 32 (312)
Q Consensus 4 ~~Cp~Cg~~-~~ii~D~~~G--~~vC~~CG~V 32 (312)
..|+.|+++ +.++.|...+ .+.|..||..
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 369999995 4556642333 4789999987
No 211
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.44 E-value=20 Score=26.82 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-+.++.+||+.+|++.+|+....+.|.+.
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 457899999999999999999999999885
No 212
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=68.86 E-value=13 Score=26.35 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHH
Q 021438 254 VIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDL 289 (312)
Q Consensus 254 aiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel 289 (312)
.-|+-......++++.+||+.+|+|+.++.+.+|+.
T Consensus 8 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 8 QNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444447899999999999999999988876
No 213
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=68.79 E-value=6.2 Score=29.25 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=26.6
Q ss_pred CCCHHHHHHHh--CcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVT--RVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~--~vs~~ti~~~~kel~~~ 292 (312)
+.+..+||+.+ ++|..+++++.+.|.+.
T Consensus 27 ~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 27 NGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 78999999999 99999999999999985
No 214
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=68.74 E-value=13 Score=29.58 Aligned_cols=29 Identities=24% Similarity=0.184 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46889999999999999999999999875
No 215
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=68.73 E-value=6.6 Score=28.57 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.+..+||+.+|++.+|+.+.++.|.+.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46789999999999999999999999874
No 216
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=68.57 E-value=3.5 Score=31.19 Aligned_cols=37 Identities=27% Similarity=0.601 Sum_probs=28.8
Q ss_pred ceeeeC-CCCceEcCCCcccc--cCcccccccccccccCC
Q 021438 14 EVVFDH-SAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (312)
Q Consensus 14 ~ii~D~-~~G~~vC~~CG~Vv--~e~~id~~~ewr~f~~~ 50 (312)
++-.|. +.|.++|..||.-| .+.-.|.|.-|.+|.+.
T Consensus 10 e~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~ 49 (124)
T 2kv1_A 10 EVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp CSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCC
T ss_pred ccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecc
Confidence 333443 77999999999988 55578999999999753
No 217
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=68.38 E-value=16 Score=29.47 Aligned_cols=29 Identities=7% Similarity=-0.078 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999875
No 218
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=68.07 E-value=11 Score=28.30 Aligned_cols=41 Identities=7% Similarity=0.164 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 021438 152 VAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (312)
Q Consensus 152 aaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~ 193 (312)
..+..|++-+..+.|.+..||++.. +++...+.+.+..|.+
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~~-~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQTN-NLSEHYLEQLVSPLRN 52 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3444556544446789999999999 8999999999988875
No 219
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=67.58 E-value=2.5 Score=35.69 Aligned_cols=29 Identities=24% Similarity=0.639 Sum_probs=18.7
Q ss_pred CCCCCCCCCCce---eeeCCCCceEcCCCcccc
Q 021438 4 SYCADCKRLTEV---VFDHSAGDTICSECGLVL 33 (312)
Q Consensus 4 ~~Cp~Cg~~~~i---i~D~~~G~~vC~~CG~Vv 33 (312)
+.||+||+. .+ --+..-.+..|.+|+.-.
T Consensus 35 ~yCPnCG~~-~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNN-PLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCCS-SCEEC----CCCEEECTTTCCEE
T ss_pred CcCCCCCCh-hhhhccCCCcccccccCCcchhh
Confidence 479999983 33 223355779999998544
No 220
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=67.23 E-value=9.8 Score=27.53 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHh-CcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVT-RVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~-~vs~~ti~~~~kel~~~ 292 (312)
.-+.++.||++.+ +++..|+..+.+.|.+.
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~ 55 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEAD 55 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 3468999999999 99999999999999885
No 221
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=67.19 E-value=4.2 Score=29.65 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCCCCCCCC-CceeeeCCCCceEcCCCcc
Q 021438 4 SYCADCKRL-TEVVFDHSAGDTICSECGL 31 (312)
Q Consensus 4 ~~Cp~Cg~~-~~ii~D~~~G~~vC~~CG~ 31 (312)
..||-|+.. +++..+...|...|-.||.
T Consensus 38 ~~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred EECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 369999863 3677888889999999993
No 222
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=67.19 E-value=2.9 Score=31.86 Aligned_cols=29 Identities=21% Similarity=0.589 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCccccc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
-.+|+.||.. -.+.....|.++| ||.=++
T Consensus 7 fYkC~~CGni-vev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 7 VYKCEVCGNI-VEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp EEECTTTCCE-EEEEECCSSCEEE--TTEECE
T ss_pred EEEcCCCCeE-EEEEcCCCcceec--CCcccc
Confidence 3579999972 1122556677888 886654
No 223
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=67.14 E-value=14 Score=29.88 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999874
No 224
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=66.95 E-value=5.3 Score=30.19 Aligned_cols=30 Identities=20% Similarity=0.597 Sum_probs=19.9
Q ss_pred CCCCCCCCCCceeeeC-----CCC---ceEcCCCcccc
Q 021438 4 SYCADCKRLTEVVFDH-----SAG---DTICSECGLVL 33 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~-----~~G---~~vC~~CG~Vv 33 (312)
..||.||....+.+.. ++| .++|.+||..-
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w 110 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIF 110 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEE
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEe
Confidence 5799999854444432 223 38999999863
No 225
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=66.83 E-value=6.6 Score=27.84 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+.++.+||+.++++..|+.+.++.|.+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 35889999999999999999999999875
No 226
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=66.65 E-value=5.6 Score=30.78 Aligned_cols=44 Identities=5% Similarity=-0.044 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 150 AIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 150 ~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
.-.-+.+|+|....+.|.+..+|++.. +++...+.+.+..|.+.
T Consensus 12 yAl~~L~~La~~~~~~~~s~~~IA~~~-~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISLKSIAEEN-NLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEHHHHHHHT-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 445566788865455689999999999 89999999999888753
No 227
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=66.44 E-value=3.6 Score=29.54 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.2
Q ss_pred CCHHHHHHHhCcchhHHHHHHHH
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
.++++||+.+|||..||+..+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 78999999999999999976543
No 228
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=66.34 E-value=7.3 Score=28.11 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.+..+||+.+|++.+|+.++.+.|.+.
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~ 66 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSV 66 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45789999999999999999999999863
No 229
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=66.32 E-value=9.8 Score=27.35 Aligned_cols=38 Identities=11% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHH
Q 021438 252 AAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDL 289 (312)
Q Consensus 252 aAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel 289 (312)
.+.=|+-....+.++++.++|+.+|+|+.++.+.+++.
T Consensus 7 ~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 7 EACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445544444367899999999999999999888875
No 230
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=66.29 E-value=4.7 Score=28.18 Aligned_cols=27 Identities=15% Similarity=0.067 Sum_probs=23.2
Q ss_pred CCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+..+||+.+||+..||.++.+.....
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNEDKL 65 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 689999999999999999888765543
No 231
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=65.97 E-value=2.9 Score=36.53 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHHHHH----HHHHHHHhh-
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKA----AQEAVQKSE- 239 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~----A~~i~~~~~- 239 (312)
...|..++++.+ |++...|.+..+--. ....+.+.+++..|+++.+..-. +........
T Consensus 42 ~g~t~~~la~~~-g~s~~~is~~e~g~~---------------~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~ 105 (311)
T 4ich_A 42 RPGAQREFAAAI-GLDESKLSKSLNGTR---------------RFSPHELVRIAEHSGVTVNWLINGRDDARTVAAVPAP 105 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHh-CCCHHHHHHHHcCCC---------------CCCHHHHHHHHHHHCCChhhhhcCCCccccccCCCCc
Confidence 356788888888 788887776532210 00224456666666665321100 000000000
Q ss_pred --h-------ccCCCChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH
Q 021438 240 --D-------LDIRRSPISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 240 --~-------l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
. -.....-.-|..|++-+... .|+ ..|+++||+.+|||..||=.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~r~~il~aa~~l~~~-~G~~~~T~~~IA~~AGvs~gtlY~yF~s 163 (311)
T 4ich_A 106 TARSRSAPAGEPQSEARRRILETAWRLIAR-RGYHNVRIHDIASELGTSNATIHYHFPS 163 (311)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 0 00001112344444444333 354 489999999999999999888753
No 232
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=65.88 E-value=6.2 Score=26.80 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHH
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
...+|+.++|+.+|+|..||.+..
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 345899999999999999999754
No 233
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=65.64 E-value=5.2 Score=32.82 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHH--hhhcccCC
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLF--PHLARIIP 298 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~--~~~~~~~p 298 (312)
...||.+||+.+|+|..+|.+..+.=. .-+-.+||
T Consensus 23 ~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lfp 59 (192)
T 1zx4_A 23 DGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFP 59 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHcC
Confidence 459999999999999999998765422 22444665
No 234
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=65.49 E-value=8.3 Score=31.47 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.+..+||+.+|+|..|++++.+.|.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~ 60 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEA 60 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999875
No 235
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=65.36 E-value=10 Score=27.79 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=25.8
Q ss_pred CCCC--HHHHHHHh-CcchhHHHHHHHHHHhh
Q 021438 264 DTKP--LKEISIVT-RVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~--~~~Ia~~~-~vs~~ti~~~~kel~~~ 292 (312)
-+.+ +.||++.+ |+|..|+.++.++|.+.
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 3455 99999999 99999999999999885
No 236
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=65.33 E-value=23 Score=28.65 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999874
No 237
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=65.30 E-value=2.7 Score=30.86 Aligned_cols=31 Identities=26% Similarity=0.649 Sum_probs=26.1
Q ss_pred CCCCceEcCCCcccc--cCcccccccccccccC
Q 021438 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (312)
Q Consensus 19 ~~~G~~vC~~CG~Vv--~e~~id~~~ewr~f~~ 49 (312)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 9 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 41 (105)
T 3mao_A 9 FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTE 41 (105)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESC
T ss_pred CCCEEEEcCCCCCccccCCcccCCCCCChhhcc
Confidence 468999999999987 4557789999999985
No 238
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.28 E-value=3.6 Score=36.45 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=19.5
Q ss_pred CCCCCCCCCCC--ceeee--CCCC--ceEcCCCccc
Q 021438 3 DSYCADCKRLT--EVVFD--HSAG--DTICSECGLV 32 (312)
Q Consensus 3 ~~~Cp~Cg~~~--~ii~D--~~~G--~~vC~~CG~V 32 (312)
...||.||+.. .++.. ..+| .+.|+-||+-
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~ 217 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACE 217 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCE
Confidence 46899999953 23332 1356 4899999864
No 239
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=65.10 E-value=5.6 Score=33.87 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
...+.+|||+.+|+|+.||+.+...+++.+..
T Consensus 211 ~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 211 KGLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 35789999999999999999999988887654
No 240
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=65.05 E-value=2.1 Score=39.19 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=11.8
Q ss_pred eEcCCCcccccCccc
Q 021438 24 TICSECGLVLEAYSV 38 (312)
Q Consensus 24 ~vC~~CG~Vv~e~~i 38 (312)
..|.+||.|..+...
T Consensus 54 ~~C~~Cg~v~~~~~~ 68 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEV 68 (416)
T ss_dssp EEETTTCCEEESSCC
T ss_pred EECCCCCceeecCcC
Confidence 579999999876554
No 241
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=65.01 E-value=4.2 Score=27.28 Aligned_cols=23 Identities=13% Similarity=-0.096 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..+||+++|+.+|+|..||.+.=
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 45889999999999999999753
No 242
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=64.83 E-value=6.5 Score=28.81 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
..+..+||+.+|++..||++.++...+.
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 4689999999999999999988876653
No 243
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=64.58 E-value=4.2 Score=26.40 Aligned_cols=20 Identities=0% Similarity=0.157 Sum_probs=18.5
Q ss_pred CCHHHHHHHhCcchhHHHHH
Q 021438 266 KPLKEISIVTRVAEGTIKNV 285 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~ 285 (312)
.+|.++|+.+|||..||.+.
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~w 30 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHH
Confidence 48999999999999999986
No 244
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=64.43 E-value=15 Score=26.41 Aligned_cols=40 Identities=10% Similarity=0.245 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHH
Q 021438 250 VAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLF 290 (312)
Q Consensus 250 iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~ 290 (312)
+..+.-|+-..+ ..++++.+||+.+|+|+.++.+.+|+..
T Consensus 7 i~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 7 IQNVLSYITEHF-SEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334444555544 3478999999999999999998888763
No 245
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=64.04 E-value=8.3 Score=29.91 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 148 ~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
.+.-.-+.+|+|-+ .+.|.+.++|++.. +++...+.+.+..|.+ .|+
T Consensus 13 ~~yAl~~L~~La~~-~~~~~~~~~iA~~~-~i~~~~l~kil~~L~~-~Gl 59 (149)
T 1ylf_A 13 FSIAVHILSILKNN-PSSLCTSDYMAESV-NTNPVVIRKIMSYLKQ-AGF 59 (149)
T ss_dssp HHHHHHHHHHHHHS-CGGGCCHHHHHHHH-TSCHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHHhC-CCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH-CCc
Confidence 34455666777753 45689999999999 8999999999998876 443
No 246
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=63.71 E-value=4.6 Score=32.56 Aligned_cols=28 Identities=21% Similarity=0.593 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCceeeeCCCC----ceEcCCCccc
Q 021438 3 DSYCADCKRLTEVVFDHSAG----DTICSECGLV 32 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G----~~vC~~CG~V 32 (312)
...||.||.... +. ..+| ..+|..||.+
T Consensus 3 ~~~C~~CG~~~~-~~-~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 3 MKFCSQCGGEVI-LR-IPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp CCBCTTTCCBCE-EE-CCTTCSSCEEEETTTTEE
T ss_pred cccCchhCCccc-cc-cccCCCCcceECCCCCCc
Confidence 468999998422 22 2233 4799999943
No 247
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=62.96 E-value=2.3 Score=28.36 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=19.8
Q ss_pred CCHHHHHHHhCcchhHHHHHHHH
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
++.+|+|+.+|||..||.+..++
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 57899999999999999877653
No 248
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=62.84 E-value=15 Score=26.33 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHH
Q 021438 251 AAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDL 289 (312)
Q Consensus 251 aaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel 289 (312)
..+.-|+...+ ..++++.+||+.+|+|+.++.+.+|+.
T Consensus 5 ~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 5 RQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444554444 456899999999999999999988876
No 249
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=62.84 E-value=5.3 Score=25.51 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
..++++++|+.+|++..||.+..+
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 357899999999999999987653
No 250
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=62.67 E-value=21 Score=26.66 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+...++++||+.++++.+|+++.++.|.+.
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 456899999999999999999999999875
No 251
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=62.28 E-value=4.6 Score=37.60 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=22.3
Q ss_pred CCCCC--CCCCCceeeeCCCCceEcCCCcccccC
Q 021438 4 SYCAD--CKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 4 ~~Cp~--Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
..||. |++ . +.+...|.+.|..||...++
T Consensus 309 ~aC~~~~C~k--k-v~~~~~g~~~C~~C~~~~~~ 339 (444)
T 4gop_C 309 TACASEGCNK--K-VNLDHENNWRCEKCDRSYAT 339 (444)
T ss_dssp EECCSTTCCC--B-EEECTTSCEEETTTTEEESS
T ss_pred ccCCcccCCC--c-cccCCCccEECCCCCCcCcc
Confidence 36999 998 2 44557899999999987643
No 252
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=62.16 E-value=10 Score=30.99 Aligned_cols=29 Identities=24% Similarity=0.184 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46889999999999999999999999875
No 253
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=62.08 E-value=15 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 36889999999999999999999999874
No 254
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=62.01 E-value=7.2 Score=28.83 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.-+.+..+||+.+|+|.+|+.++.+.|.+.
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 346789999999999999999999999874
No 255
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=61.91 E-value=3.4 Score=31.04 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=15.7
Q ss_pred ceeeeCCCCceEcCCCccccc
Q 021438 14 EVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 14 ~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
.+......+...|.+||...+
T Consensus 64 ~L~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 64 ILDIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp CEEEEEECCEEECSSSSCEEC
T ss_pred EEEEEeccceEEcCCCCCEEe
Confidence 455566778888888888865
No 256
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=61.82 E-value=4 Score=31.70 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=26.4
Q ss_pred CCCCceEcCCCcccc--cCcccccccccccccCC
Q 021438 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (312)
Q Consensus 19 ~~~G~~vC~~CG~Vv--~e~~id~~~ewr~f~~~ 50 (312)
...|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 33 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 66 (143)
T 2l1u_A 33 KETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA 66 (143)
T ss_dssp CCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSC
T ss_pred cCCeEEEeCCCCCeeecCcccccCCCCChhhchh
Confidence 568999999999877 45578889999999754
No 257
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=61.75 E-value=5.4 Score=33.80 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=22.3
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~ 31 (312)
..|-.||......++...|..+|.+|+.
T Consensus 151 ~~C~~cg~~~~~~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 151 ARCARCGAPDPEHPDPLGGQLLCSKCAA 178 (244)
T ss_dssp SBCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred CccccCCCCCCCcEecccCEEECcccCC
Confidence 4799999754457888999999999864
No 258
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=61.71 E-value=26 Score=25.84 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=26.4
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.++.+||+.++++.+|+....+.|.+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7899999999999999999999999885
No 259
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=61.66 E-value=12 Score=28.85 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-..++.||++.+|++..|+.++.+.|.+.
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36889999999999999999999999885
No 260
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=61.62 E-value=15 Score=29.29 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999875
No 261
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=61.60 E-value=6.3 Score=25.96 Aligned_cols=23 Identities=26% Similarity=0.073 Sum_probs=20.2
Q ss_pred CCHHHHHHHhCcchhHHHHHHHH
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
++.+||++.+|+|..||.+..++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 67899999999999999877664
No 262
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=61.52 E-value=8.1 Score=28.59 Aligned_cols=29 Identities=7% Similarity=-0.057 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.+..+||+.+|++.+|+.++++.|.+.
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~~ 61 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRGC 61 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35788999999999999999999999873
No 263
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=61.50 E-value=23 Score=26.22 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+.++.+||+.++++.+|+....+.|.+.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 57899999999999999999999999885
No 264
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=61.39 E-value=5.7 Score=26.27 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhCcchhHHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
.+|++++|+.+|++..||.+..+
T Consensus 21 glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 47899999999999999997654
No 265
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=61.35 E-value=4.1 Score=31.92 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=26.7
Q ss_pred CCCCceEcCCCcccc--cCcccccccccccccCC
Q 021438 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (312)
Q Consensus 19 ~~~G~~vC~~CG~Vv--~e~~id~~~ewr~f~~~ 50 (312)
...|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 57 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 90 (151)
T 2k8d_A 57 HDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDV 90 (151)
T ss_dssp CSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCC
T ss_pred CCCEEEEecCCCCcccCCcccccCCCCCcccCcc
Confidence 578999999999887 45568899999999854
No 266
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=61.32 E-value=12 Score=30.33 Aligned_cols=29 Identities=7% Similarity=-0.056 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56889999999999999999999999885
No 267
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=61.24 E-value=33 Score=22.71 Aligned_cols=32 Identities=6% Similarity=0.065 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
...+.+||++.+ |++..++......+.+.|+.
T Consensus 30 ~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 30 AGLPNKSIAYDL-DISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp TTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 346889999999 89999999998888888764
No 268
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=61.12 E-value=5.7 Score=26.90 Aligned_cols=23 Identities=0% Similarity=0.086 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..+||.++|+.+|+|..||.+..
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e 46 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALF 46 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 35789999999999999999764
No 269
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=60.96 E-value=24 Score=28.73 Aligned_cols=30 Identities=7% Similarity=-0.068 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
..++|+++||+.+|+|..|+.+..++|.+.
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 456789999999999999999999999875
No 270
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=60.86 E-value=8.2 Score=27.92 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.+..+||+.+|++.+|+....+.|.+.
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~ 61 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQAC 61 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35899999999999999999999999764
No 271
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=60.82 E-value=13 Score=28.08 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
...++.+||+.++++.+|+++.++.|.+.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~ 49 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKD 49 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 35899999999999999999999999774
No 272
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=60.82 E-value=6.7 Score=26.56 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=19.0
Q ss_pred CHHHHHHHhCcchhHHHHHHH
Q 021438 267 PLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 267 ~~~~Ia~~~~vs~~ti~~~~k 287 (312)
++.++|+.+|||..||.++.+
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 489999999999999999864
No 273
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=60.66 E-value=15 Score=27.36 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFP 291 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~ 291 (312)
-+.+..+||+.+|++.+|+.++.+.|.+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4688999999999999999999999998
No 274
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=60.48 E-value=3.7 Score=32.30 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhC--------------cchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTR--------------VAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~--------------vs~~ti~~~~kel~~~ 292 (312)
+.-..++|+..| +|..|||+.++.|...
T Consensus 67 ~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~ 108 (150)
T 2v7f_A 67 PVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAA 108 (150)
T ss_dssp SBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHC
Confidence 333488999999 9999999999998774
No 275
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=60.25 E-value=26 Score=25.29 Aligned_cols=70 Identities=9% Similarity=0.136 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH--HHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHH
Q 021438 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVA--ACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (312)
Q Consensus 111 ~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaa--Acly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~ 188 (312)
..++.+|+.++++..-+. .++|+...+-| .+.|++-+. +..|+.+|...+ |-+-.++..++
T Consensus 9 ~I~~~Va~~f~v~~~dl~--------------s~~R~~~i~~aRqiAmYL~r~~--t~~Sl~~IG~~f-gRDHsTV~ha~ 71 (101)
T 3pvv_A 9 TIMAATAEYFDTTVEELR--------------GPGKTRALAQSRQIAMYLCREL--TDLSLPKIGQAF-GRDHTTVMYAQ 71 (101)
T ss_dssp HHHHHHHHHTTCCHHHHH--------------SSCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHh--------------CCCCCchhhHHHHHHHHHHHHH--hCCCHHHHHHHH-CCCHHHHHHHH
Confidence 345566666776643111 23444433322 456776443 678999999999 79999999999
Q ss_pred HHHHHHHhh
Q 021438 189 EFIVKHLEA 197 (312)
Q Consensus 189 ~~l~~~l~~ 197 (312)
+++.+.+..
T Consensus 72 ~ki~~~~~~ 80 (101)
T 3pvv_A 72 RKILSEMAE 80 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 276
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=60.17 E-value=7.6 Score=32.70 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.+++..++|+.+|||..|||..++.|...
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~~~ 76 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLEAQ 76 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567899999999999999999999998653
No 277
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=60.09 E-value=42 Score=23.58 Aligned_cols=37 Identities=5% Similarity=-0.150 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHH
Q 021438 153 AACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190 (312)
Q Consensus 153 aAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~ 190 (312)
.+.-|+--...+.+.++.++|+.+ |++...|.+.++.
T Consensus 6 ~i~~~i~~~~~~~~~~~~~lA~~~-~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 6 LIQNIIEESYTDSQFTLSVLSEKL-DLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHT-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHH-CcCHHHHHHHHHH
Confidence 334455544444589999999999 8999998887655
No 278
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=60.03 E-value=6.5 Score=31.50 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999874
No 279
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=59.91 E-value=4 Score=32.45 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=26.4
Q ss_pred CCCCceEcCCCcccc--cCcccccccccccccCC
Q 021438 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (312)
Q Consensus 19 ~~~G~~vC~~CG~Vv--~e~~id~~~ewr~f~~~ 50 (312)
...|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 69 ~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~p 102 (164)
T 3cxk_A 69 EDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKP 102 (164)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSC
T ss_pred CCCeEEEccCCCccccCCchhccCCCCCcccCcc
Confidence 467999999999887 44567889999999854
No 280
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=59.83 E-value=6.9 Score=25.24 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..++++++|+.+|++..||.+..
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e 35 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45789999999999999998764
No 281
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=59.79 E-value=14 Score=26.71 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHH
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDL 289 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel 289 (312)
..++++.+||+.+|+|+.++.+.+++.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456899999999999999999988876
No 282
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=59.68 E-value=14 Score=29.16 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 253 Aaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.+|||.. .+..++.++||+..++++..+++.++.|.+.
T Consensus 17 ~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 17 SILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34455543 3567899999999999999999999999885
No 283
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=59.67 E-value=7 Score=25.07 Aligned_cols=22 Identities=9% Similarity=-0.012 Sum_probs=19.4
Q ss_pred CCCHHHHHHHhCcchhHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
.+++.++|+.+|++..||.+..
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e 39 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWE 39 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999999998754
No 284
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=59.60 E-value=12 Score=28.15 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.+.++.+||+.+|++.+|+....+.|.+.
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~~ 68 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEEL 68 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999874
No 285
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=59.59 E-value=1.6 Score=33.15 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=25.4
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +.+++|+.+|||..||++.|+.|...
T Consensus 32 G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~ 62 (126)
T 3ic7_A 32 EGRIPSVREYASIVEVNANTVMRSYEYLQSQ 62 (126)
T ss_dssp TSEECCTTTTTTCC-CCSGGGHHHHHHHHTT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4566 68999999999999999999999874
No 286
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=59.57 E-value=8 Score=32.59 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=25.4
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +.+++|+..|||..|+|++++.|.+.
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 60 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVEE 60 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5667 68999999999999999999999874
No 287
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=59.42 E-value=3.6 Score=29.61 Aligned_cols=24 Identities=21% Similarity=0.740 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGL 31 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~ 31 (312)
...||.||. ...=. -...|..||+
T Consensus 16 H~lCrRCG~-~sfH~----qK~~CgkCGY 39 (97)
T 2zkr_2 16 HTLCRRCGS-KAYHL----QKSTCGKCGY 39 (97)
T ss_dssp EECCTTTCS-SCEET----TSCCBTTTCT
T ss_pred CCcCCCCCC-ccCcC----ccccCcccCC
Confidence 357999998 44422 3569999999
No 288
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=59.35 E-value=21 Score=25.36 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=34.2
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHh-CcchhHHHHHHHHHHhhhcc
Q 021438 254 VIYIITQLSND-TKPLKEISIVT-RVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 254 aiyla~~~~~~-~~~~~~Ia~~~-~vs~~ti~~~~kel~~~~~~ 295 (312)
.|+.+|+..|- ..+...||..+ +-++..+++|+++|......
T Consensus 43 ~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 43 VILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 46778887775 57788899998 49999999999999886554
No 289
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=59.28 E-value=4.3 Score=31.53 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=26.2
Q ss_pred CCCCceEcCCCcccc--cCcccccccccccccC
Q 021438 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (312)
Q Consensus 19 ~~~G~~vC~~CG~Vv--~e~~id~~~ewr~f~~ 49 (312)
...|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 38 ~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~ 70 (144)
T 3e0o_A 38 KEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTK 70 (144)
T ss_dssp CCSEEEEETTTCCEEEETTTBCCCTTSSCEESC
T ss_pred CCCEEEEeCCCCcccccCcccccCCCCCcccCc
Confidence 568999999999887 5557889999999985
No 290
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=59.13 E-value=7.1 Score=25.32 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..++++++|+.+|++..||.+..
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e 37 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 45789999999999999998764
No 291
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=59.08 E-value=45 Score=23.66 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHH
Q 021438 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190 (312)
Q Consensus 151 iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~ 190 (312)
+..+.-|+--.. ..+.++.++|+.+ |++...+.+.++.
T Consensus 7 i~~~~~~i~~~~-~~~~~~~~lA~~~-~~S~~~l~r~fk~ 44 (108)
T 3oou_A 7 IQNVLSYITEHF-SEGMSLKTLGNDF-HINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHH-CcCHHHHHHHHHH
Confidence 344455555443 4489999999999 8999998887755
No 292
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=58.89 E-value=18 Score=28.42 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCcchhHHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
.+|+.+||+.+|||..|+.++.+
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 58999999999999999998766
No 293
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=58.87 E-value=8.6 Score=27.18 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFP 291 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~ 291 (312)
..+..+||+.+||+..||.++.+....
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 468999999999999999998877654
No 294
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=58.54 E-value=9.9 Score=27.87 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=27.0
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
..++.+||+.++++.+|+.+..+.|.+ .+.
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le~-~Gl 74 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLRN-LGL 74 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHHH-HCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH-CCC
Confidence 689999999999999999999999988 443
No 295
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=58.44 E-value=8.5 Score=31.35 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46889999999999999999999999875
No 296
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=58.32 E-value=42 Score=23.78 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHH
Q 021438 152 VAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190 (312)
Q Consensus 152 aaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~ 190 (312)
..++-|+--...+.+.++.++++.+ |++...+.+.++.
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~-~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHV-CLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHT-TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHH-CCCHHHHHHHHHH
Confidence 3444455433333789999999999 8999998877654
No 297
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=58.20 E-value=18 Score=27.53 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHh-CcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVT-RVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~-~vs~~ti~~~~kel~~~ 292 (312)
.-+.++.|+++.+ |+|..++..+.++|.+.
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~ 67 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEAD 67 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHC
Confidence 4578999999999 99999999999999885
No 298
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=58.10 E-value=6.7 Score=27.60 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
..+||.++|+.+|||..||.+..+
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 357999999999999999997654
No 299
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=58.07 E-value=38 Score=27.66 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=26.8
Q ss_pred CC-CCCHHHHHHHhCcch-hHHHHHHHHHHhh
Q 021438 263 ND-TKPLKEISIVTRVAE-GTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~-~~~~~~Ia~~~~vs~-~ti~~~~kel~~~ 292 (312)
.. ++|+++||+.+|+|. .|+.+..++|.+.
T Consensus 166 ~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 166 TLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred EeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 35 789999999999999 7999999999874
No 300
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=57.99 E-value=6.4 Score=28.13 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.+..+||+.+|++.+|+..+.+.|.+.
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999886
No 301
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=57.96 E-value=13 Score=27.51 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.+.++.+||+.++++.+|+....+.|.+.
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~ 70 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356899999999999999999999999885
No 302
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=57.87 E-value=26 Score=23.70 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHH
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
...+||+++|+.+|++..||.+..+
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4568999999999999999997654
No 303
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=57.69 E-value=4.4 Score=31.62 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=26.2
Q ss_pred CCCCceEcCCCcccc--cCcccccccccccccC
Q 021438 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (312)
Q Consensus 19 ~~~G~~vC~~CG~Vv--~e~~id~~~ewr~f~~ 49 (312)
...|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 39 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 71 (146)
T 3hcg_A 39 FKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTR 71 (146)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESS
T ss_pred CCCEEEEecCCCcccccCcccccCCCCChhhcc
Confidence 568999999999987 4557789999999984
No 304
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=57.69 E-value=35 Score=24.22 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=35.2
Q ss_pred HHHHHHHhCC-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 156 LYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 156 ly~acr~~~~-p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
|+.+|+..|. +.++..|+..+.+-++.++...|+.|.+.+.-
T Consensus 44 IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 44 ILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 5678898877 89999999998448899999999999887763
No 305
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=57.66 E-value=26 Score=29.35 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
++|+++||+.+|+|..|+.+..++|.+.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 6889999999999999999999999874
No 306
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=57.58 E-value=6.2 Score=29.80 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-+.++.+||+.++++.+|+....+.|.+.
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 77 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKK 77 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 346889999999999999999999999875
No 307
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=57.45 E-value=7.6 Score=31.32 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 45789999999999999999999999885
No 308
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=57.28 E-value=7.8 Score=25.89 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=19.4
Q ss_pred CCCHHHHHHHhCcchhHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
.+|++++|+.+|++..||.+.-
T Consensus 15 glsq~~lA~~~gis~~~i~~~e 36 (77)
T 2k9q_A 15 SLTAKSVAEEMGISRQQLCNIE 36 (77)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHH
Confidence 5789999999999999998654
No 309
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=57.25 E-value=24 Score=26.57 Aligned_cols=31 Identities=6% Similarity=0.101 Sum_probs=27.5
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+..+++.+||+.++++.+|+....+.|.+.
T Consensus 51 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 81 (150)
T 3fm5_A 51 QAEGVNQRGVAATMGLDPSQIVGLVDELEER 81 (150)
T ss_dssp STTCCCSHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 4556899999999999999999999999874
No 310
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=57.22 E-value=3.1 Score=31.21 Aligned_cols=32 Identities=25% Similarity=0.617 Sum_probs=22.7
Q ss_pred CCCCCCCCCC-CceeeeCCCCceEcCCCccccc
Q 021438 3 DSYCADCKRL-TEVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 3 ~~~Cp~Cg~~-~~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
...|.+||.. +..-....+|.++|..||+...
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 3689999973 2333335678999999999764
No 311
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=57.09 E-value=6.7 Score=27.15 Aligned_cols=30 Identities=17% Similarity=0.598 Sum_probs=22.2
Q ss_pred CCCCCCC--CCCCCceeeeCCCCceEcC-----CCcccc
Q 021438 2 ADSYCAD--CKRLTEVVFDHSAGDTICS-----ECGLVL 33 (312)
Q Consensus 2 ~~~~Cp~--Cg~~~~ii~D~~~G~~vC~-----~CG~Vv 33 (312)
....||. |+. .++.+.....+.|. .||...
T Consensus 24 ~~~~CP~p~C~~--~v~~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 24 GGVLCPRPGCGA--GLLPEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SSCCCCSSSCCC--CCCCCSCTTSBCTTSSSTTCCSCCE
T ss_pred CcEECCCCCCCc--ccEECCCCCcCCCCCCCCCCCCCee
Confidence 4568998 997 35556666778998 899875
No 312
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=57.08 E-value=9.1 Score=32.34 Aligned_cols=30 Identities=10% Similarity=0.115 Sum_probs=26.6
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +.+++|+..|||..|+|+.++.|.+.
T Consensus 31 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 61 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQALSNLVNE 61 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4567 58999999999999999999999874
No 313
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=57.04 E-value=14 Score=23.30 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=27.3
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 166 p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
..+.+||+..+ |++..++......+.+.|+.
T Consensus 13 g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 13 GYTNHGISEKL-HISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp SCCSHHHHHHT-CSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHh-CCCHHHHHHHHHHHHHHHCC
Confidence 45889999999 89999999999998888875
No 314
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=56.95 E-value=27 Score=24.07 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
.+.|..||+..+ |++..++.+.+.+|.+.
T Consensus 26 ~~~t~~eLA~~L-gvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 26 KATTAHDLSGKL-GTPKKEINRVLYSLAKK 54 (81)
T ss_dssp CCBCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 579999999999 89999999998887754
No 315
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=56.85 E-value=8.9 Score=27.00 Aligned_cols=29 Identities=7% Similarity=-0.013 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
...++.+||+.++++.+|+.+..+.|.+.
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 57 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEEA 57 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34899999999999999999999998774
No 316
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=56.84 E-value=3.7 Score=31.31 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCcccccCc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e~ 36 (312)
..||.|+..+.+-.+.......|..||.-+.+.
T Consensus 6 ~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~ 38 (148)
T 3p2a_A 6 TVCTACMATNRLPEERIDDGAKCGRCGHSLFDG 38 (148)
T ss_dssp EECTTTCCEEEEESSCSCSCCBCTTTCCBTTCC
T ss_pred EECcccccccCCCCcccccCCcchhcCCccccC
Confidence 469999985444444455557799999877554
No 317
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=56.84 E-value=9.3 Score=32.43 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=27.1
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +.+++|+..|||..|+|+++++|.+.
T Consensus 33 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 63 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRELLID 63 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 6677 68999999999999999999999874
No 318
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=56.74 E-value=4 Score=32.07 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=26.5
Q ss_pred eCCCCceEcCCCcccc--cCcccccccccccccC
Q 021438 18 DHSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (312)
Q Consensus 18 D~~~G~~vC~~CG~Vv--~e~~id~~~ewr~f~~ 49 (312)
....|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 45 ~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (154)
T 3hcj_A 45 NKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78 (154)
T ss_dssp SCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEE
T ss_pred CCCCEEEEccCCCCccccCcccccCCCCCccccc
Confidence 3568999999999987 5557888999999974
No 319
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=56.54 E-value=18 Score=28.26 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHH
Q 021438 245 RSPISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 245 r~P~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
..|.-|..||+=+.++ .|+ ..|.++||+.+|||..||-.+|+
T Consensus 7 ~~~~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (192)
T 2zcm_A 7 HMKDKIIDNAITLFSE-KGYDGTTLDDISKSVNIKKASLYYHYD 49 (192)
T ss_dssp -CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTCCHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCChHHHHHHCC
Confidence 4455666666665554 465 58899999999999999998874
No 320
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=56.53 E-value=9.5 Score=32.11 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=26.8
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +.+++|+..|||..|+|+.++.|...
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 56 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQK 56 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5667 68999999999999999999999874
No 321
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=56.53 E-value=22 Score=27.67 Aligned_cols=31 Identities=3% Similarity=0.045 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+..+++.+||+.++++..|+....+.|.+.
T Consensus 65 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 95 (166)
T 3deu_A 65 LPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp SCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 3556899999999999999999999999885
No 322
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=56.46 E-value=20 Score=26.74 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.++.+||+.++++..|+....+.|.+.
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 36899999999999999999999999885
No 323
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=56.45 E-value=34 Score=25.44 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.+.++.+||+.++++.+|+....+.|.+.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 457899999999999999999999999885
No 324
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=56.43 E-value=21 Score=24.29 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=28.0
Q ss_pred HHHHhC--CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 159 ACRQEN--KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 159 acr~~~--~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
..+.++ -+.|..|||..+ |++..++.+.+..|.+.
T Consensus 22 ~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 22 FLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 344444 479999999999 89999999998888754
No 325
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=56.41 E-value=17 Score=25.73 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+..+++++|++.++++..|+.+..+.|.+.
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE~k 63 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLESK 63 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 346999999999999999999999998764
No 326
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=56.32 E-value=7.1 Score=29.36 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.++.+||+.++++.+|+...++.|.+.
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 36889999999999999999999999885
No 327
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=56.18 E-value=9.5 Score=31.80 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=26.9
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +..++|+.+|||..|||..++.|...
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVReAL~~L~~e 58 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLREVLQRLARD 58 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5678 58999999999999999999998874
No 328
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=56.14 E-value=7.7 Score=27.17 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=26.1
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
..++.+||+.+|++.+|+..+.+.|.+.
T Consensus 30 ~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 30 KAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 6889999999999999999999999885
No 329
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=56.06 E-value=8.4 Score=25.56 Aligned_cols=24 Identities=4% Similarity=0.362 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
..+|+.++|+.+|+|..||.+..+
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 457899999999999999987653
No 330
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=56.01 E-value=5.4 Score=33.14 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=20.3
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCccccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
..|++||.. + .........|..||.+..
T Consensus 11 ~~Cw~C~~~--~-~~~~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 11 PRCWNCGGP--W-GPGREDRFFCPQCRALQA 38 (207)
T ss_dssp CBCSSSCCB--C-CSSCSCCCBCTTTCCBCC
T ss_pred CCCCCCCCC--c-ccccccccccccccccCC
Confidence 579999973 1 112356899999999864
No 331
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=55.88 E-value=17 Score=24.67 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHh-----CcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVT-----RVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~-----~vs~~ti~~~~kel~~~ 292 (312)
...+..||++.+ +++.+||.+..+.|.+.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 578999999999 99999999998888874
No 332
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=55.87 E-value=13 Score=28.45 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.3
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
..+..+||+.+|++..||++.++...+.
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4679999999999999999998887654
No 333
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=55.77 E-value=8.6 Score=25.29 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhCcchhHHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
.+++.++|+.+|++..||.+..+
T Consensus 18 gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 47899999999999999987643
No 334
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=55.72 E-value=31 Score=25.63 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=23.2
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.++.+||+.++++.+|+....+.|.+.
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 6899999999999999999999999875
No 335
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=55.71 E-value=8.4 Score=26.86 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCcchhHHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
.++|.++|+.+|+++.||....+
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 68899999999999999997654
No 336
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=55.50 E-value=8.7 Score=25.39 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..+|+.++|+.+|+|..||.+..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e 44 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHH
Confidence 45789999999999999998754
No 337
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=55.44 E-value=13 Score=27.54 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.-+.+..+||+.+|++.+|+.+..+.|.+.
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~~ 83 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYKQ 83 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346889999999999999999999999863
No 338
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=55.44 E-value=8.7 Score=25.94 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
..+||+++|+.+|+|..||.+.-+.
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3578999999999999999976543
No 339
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=55.36 E-value=51 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.++.+||+.++++.+|+....+.|.+.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 72 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQ 72 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4899999999999999999999999875
No 340
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=55.28 E-value=8.9 Score=25.06 Aligned_cols=23 Identities=4% Similarity=0.117 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..+++.++|+.+|++..||.+.-
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e 47 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVE 47 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45789999999999999998754
No 341
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=55.26 E-value=7.4 Score=27.28 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=20.6
Q ss_pred CCHHHHHHHhCcchhHHHHHHHHHHh
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKDLFP 291 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~kel~~ 291 (312)
.+|+.||+..|++++||.+.-....+
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~~~~ 50 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRDWIP 50 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHTHH
T ss_pred HhhHHHHHHhCCCHHHHhhhhhhHHH
Confidence 56899999999999999975444433
No 342
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=55.21 E-value=14 Score=29.49 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHH
Q 021438 246 SPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 246 ~P~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
+-.-|..||+-+.++-- ...|+++||+.+|||..||-.+|+
T Consensus 21 ~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 21 TRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcC
Confidence 34556667777666665 779999999999999999998885
No 343
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=55.03 E-value=8.3 Score=25.42 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
..+++.++|+.+|++..||.+..+
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 357899999999999999987643
No 344
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=54.75 E-value=39 Score=25.23 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=26.3
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
..++.+||+.++++..|+....+.|.+.
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 6899999999999999999999999885
No 345
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=54.71 E-value=20 Score=24.71 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
.+.|+.||+..+ |++..++.....+..+.|..
T Consensus 37 ~~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 37 KPKTLEEVGQYF-NVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHBT
T ss_pred CCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 679999999999 89999999988887777764
No 346
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=54.58 E-value=10 Score=25.14 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=20.1
Q ss_pred CHHHHHHHhCcchhHHHHHHHH
Q 021438 267 PLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 267 ~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
++.++|+.+|+|..||.+..+.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999988754
No 347
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=54.54 E-value=17 Score=23.64 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
...|.+|||+.+ |++..++.....+..+.|..
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 478999999999 89999999988887777764
No 348
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=54.54 E-value=15 Score=26.70 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHh-CcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVT-RVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~-~vs~~ti~~~~kel~~~ 292 (312)
-+.++.+|++.+ +++..|+..+.+.|.+.
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 368999999999 99999999999999885
No 349
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=54.51 E-value=9.7 Score=24.24 Aligned_cols=24 Identities=4% Similarity=-0.093 Sum_probs=20.4
Q ss_pred HHHHHHHhCcchhHHHHHHHHHHh
Q 021438 268 LKEISIVTRVAEGTIKNVYKDLFP 291 (312)
Q Consensus 268 ~~~Ia~~~~vs~~ti~~~~kel~~ 291 (312)
..+||...||+..||++..+...+
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~~~~ 51 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQCESN 51 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 899999999999999988765433
No 350
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=54.42 E-value=3 Score=33.10 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
..+.+|||..+|+|+.||++++....+.+..
T Consensus 151 g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 151 DLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999877776543
No 351
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=54.32 E-value=9 Score=31.20 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 35889999999999999999999999874
No 352
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=54.08 E-value=11 Score=32.61 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=26.9
Q ss_pred CCCC-CHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTK-PLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~-~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.++ +.+++|+..|||..|||++++.|.+.
T Consensus 50 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 80 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVALEARKVLMAE 80 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5567 68999999999999999999999884
No 353
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=53.96 E-value=9.7 Score=25.63 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=19.2
Q ss_pred CHHHHHHHhCcchhHHHHHHH
Q 021438 267 PLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 267 ~~~~Ia~~~~vs~~ti~~~~k 287 (312)
++.++|+.+|||..||.+..+
T Consensus 13 sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
Confidence 899999999999999998754
No 354
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=53.81 E-value=9.5 Score=25.77 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhCcchhHHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
.+||+++|+.+|++..||.+.-+
T Consensus 27 gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 27 GITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 47899999999999999987643
No 355
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=53.76 E-value=9.5 Score=25.73 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..+||+++|+.+|++..||.+.-
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e 45 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIE 45 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 45789999999999999999764
No 356
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=53.73 E-value=13 Score=25.85 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHH
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
...++++++|+.+|++..||.+..
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e 43 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWC 43 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 346889999999999999998754
No 357
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=53.72 E-value=9.2 Score=27.69 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHhCcchhHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNV 285 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~ 285 (312)
..+||+++|+.+|+|..||.+.
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~ 69 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNA 69 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHH
Confidence 4588999999999999999854
No 358
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=53.69 E-value=9.5 Score=25.81 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccccCc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e~ 36 (312)
...|-.||+ ++ ...| +.|.+||+..=.+
T Consensus 35 pt~C~~C~~---~l--~~qG-~kC~~C~~~cHkk 62 (72)
T 2fnf_X 35 PGWCDLCGR---EV--LRQA-LRCANCKFTCHSE 62 (72)
T ss_dssp CCBCTTTSS---BC--SSCC-EECTTSSCEECTG
T ss_pred CcchhhhhH---HH--HhCc-CccCCCCCeechh
Confidence 467999997 23 4455 6799999987543
No 359
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=53.68 E-value=18 Score=26.95 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=27.8
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+.+.++.+||+.++++.+|+....+.|.+.
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~ 79 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 4557899999999999999999999999875
No 360
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=53.66 E-value=9.1 Score=31.53 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.+++..++|+.+|||..|||..++.|...
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L~~e 62 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQLATE 62 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567889999999999999999999998764
No 361
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=53.66 E-value=8.5 Score=30.43 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHHHHh
Q 021438 248 ISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKDLFP 291 (312)
Q Consensus 248 ~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~kel~~ 291 (312)
.-|..|++-+..+ .|+ ..|+++||+.+|||..|+=.+|+.-.+
T Consensus 15 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~ 58 (189)
T 3vp5_A 15 NRVYDACLNEFQT-HSFHEAKIMHIVKALDIPRGSFYQYFEDLKD 58 (189)
T ss_dssp HHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHH-CCcccccHHHHHHHhCCChHHHHHHCCCHHH
Confidence 3455566655544 464 689999999999999999887754333
No 362
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=53.62 E-value=2.6 Score=32.08 Aligned_cols=16 Identities=38% Similarity=0.839 Sum_probs=13.4
Q ss_pred eCCCCceEcCCCcccc
Q 021438 18 DHSAGDTICSECGLVL 33 (312)
Q Consensus 18 D~~~G~~vC~~CG~Vv 33 (312)
+-.+|.++|.+||.+.
T Consensus 94 ~V~EG~L~Cp~cgr~y 109 (125)
T 3q87_A 94 DVVEGSLRCDMCGLIY 109 (125)
T ss_dssp EEEEEEEEETTTCCEE
T ss_pred EEEEEEEECCCCCCEe
Confidence 3457999999999985
No 363
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=53.52 E-value=1.3e+02 Score=27.40 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhhhc
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPHLA 294 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~~~ 294 (312)
...|++|||..+|+|..||+++...-...+.
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 5799999999999999999988765555443
No 364
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=53.49 E-value=9.6 Score=26.25 Aligned_cols=23 Identities=4% Similarity=-0.032 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..+||+++|+.+|+|..||.+.-
T Consensus 26 ~gltq~elA~~~gis~~~is~~E 48 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 45899999999999999999753
No 365
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=53.38 E-value=22 Score=26.05 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHH
Q 021438 250 VAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 250 iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
+..+.-|+-..+ ..++++.+||+.+|+|+.++.+.+|+
T Consensus 9 ~~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 9 RTRVCTVINNNI-AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHTST-TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 333344443333 34789999999999999999988876
No 366
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=53.38 E-value=19 Score=27.39 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=26.3
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
..++.+||+.++++..|+....+.|.+.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 6899999999999999999999999885
No 367
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=53.32 E-value=20 Score=26.71 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhC--cchhHHHHHHHHH
Q 021438 265 TKPLKEISIVTR--VAEGTIKNVYKDL 289 (312)
Q Consensus 265 ~~~~~~Ia~~~~--vs~~ti~~~~kel 289 (312)
..+.++|+..+| +|..||.+.+++.
T Consensus 77 ~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 77 CKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp CCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 478899999988 8999999888764
No 368
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=53.26 E-value=21 Score=22.92 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHH
Q 021438 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (312)
Q Consensus 164 ~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (312)
....|..+++..+ |++...|.+..+ + ... |...+.+++..|+++.+
T Consensus 14 ~~glsq~~lA~~~-gis~~~i~~~e~------g-------~~~---~~~~l~~i~~~l~~~~~ 59 (71)
T 1zug_A 14 ALKMTQTELATKA-GVKQQSIQLIEA------G-------VTK---RPRFLFEIAMALNCDPV 59 (71)
T ss_dssp HTTCCHHHHHHHH-TSCHHHHHHHHT------T-------CCS---SCSTHHHHHHHTTSCHH
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHc------C-------CCC---ChHHHHHHHHHHCCCHH
Confidence 3457899999999 899888766532 1 111 12238899999999864
No 369
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=53.24 E-value=12 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+...++.+||+.++++.+|+.+..+.|.+.
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 456899999999999999999999999885
No 370
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=52.77 E-value=4.6 Score=30.22 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=5.1
Q ss_pred ceEcCCCccc
Q 021438 23 DTICSECGLV 32 (312)
Q Consensus 23 ~~vC~~CG~V 32 (312)
...|.+||+.
T Consensus 59 ~~~C~~C~t~ 68 (115)
T 4hc9_A 59 GTSCANCQTT 68 (115)
T ss_dssp TCCCTTTCCS
T ss_pred cccCCCcCCC
Confidence 3455555543
No 371
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=52.71 E-value=25 Score=23.18 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~ 196 (312)
.+.|..||+..+ |++..++........+.|.
T Consensus 29 ~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 579999999999 8999999988777777665
No 372
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=52.71 E-value=9.6 Score=31.49 Aligned_cols=30 Identities=7% Similarity=0.109 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.+++..++|+.+|||..|||..++.|...
T Consensus 37 G~~L~E~~La~~lgVSRtpVREAl~~L~~e 66 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGRNSVREALQRLAAE 66 (222)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 677889999999999999999999998764
No 373
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=52.62 E-value=10 Score=31.25 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++|+.+||+.+|+|..|+.+..++|.+.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 46889999999999999999999999874
No 374
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=52.55 E-value=7.9 Score=23.86 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCceeeeCCCCceEcCCCcccc
Q 021438 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (312)
Q Consensus 1 ~~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv 33 (312)
|...+|-.||..-+..+=..--.+-|..||+=+
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 455678888863111111223456787887643
No 375
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=52.53 E-value=8.2 Score=27.90 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=20.7
Q ss_pred CCHHHHHHHhCcchhHHHHHHHHHHh
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKDLFP 291 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~kel~~ 291 (312)
.+|+.||+..||+++||...-....+
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~~~~~ 49 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKRDWIP 49 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 56999999999999999975444433
No 376
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=52.43 E-value=8.4 Score=30.56 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=18.4
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~V 32 (312)
..||.|++ .++++. |.++|+ |.+
T Consensus 79 ~~CP~C~G--~l~y~~--~~Y~C~--G~i 101 (160)
T 2riq_A 79 LPCEECSG--QLVFKS--DAYYCT--GDV 101 (160)
T ss_dssp CCCTTTCC--CEEEET--TEEEEC--CEE
T ss_pred CCCCCCCC--EEEEeC--CeEEEC--CCC
Confidence 47999995 688874 999998 555
No 377
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=52.34 E-value=33 Score=22.23 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=27.3
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 166 p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
..+..||++.+ |++..++......+.+.|+.
T Consensus 26 g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 26 DKTTKEIASEL-FISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp TCCHHHHHHHH-TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHHHCC
Confidence 45999999999 89999999999998888874
No 378
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=52.26 E-value=12 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
..+++.++|+.+|++..||.+.-+
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 357899999999999999997654
No 379
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=52.23 E-value=10 Score=24.51 Aligned_cols=27 Identities=22% Similarity=0.593 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcccccC
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
...|-.||+ ++ ..+| +.|.+||++.-.
T Consensus 22 pt~C~~C~~---~i--~kqg-~kC~~C~~~cH~ 48 (59)
T 1rfh_A 22 PGWCDLCGR---EV--LRQA-LRCANCKFTCHS 48 (59)
T ss_dssp CEECTTTCS---EE--CSCC-EECTTTSCEECH
T ss_pred CeEchhcch---hh--hhCc-cEeCCCCCeEeh
Confidence 457999987 33 4455 679999998743
No 380
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=52.18 E-value=10 Score=25.49 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..++|.++|+.+|++..||.+.-
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e 44 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIE 44 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 45789999999999999998754
No 381
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=51.98 E-value=49 Score=27.18 Aligned_cols=48 Identities=15% Similarity=0.285 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHHhC----------CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 146 RNQEAIVAACLYIACRQEN----------KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 146 r~~~~iaaAcly~acr~~~----------~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
.+...-.+..++.-++..+ .|.|..+||+.+ |++..++.+.+++|.+.
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~l-G~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 147 YNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEIT-GVHHVTVSRVLASLKRE 204 (250)
T ss_dssp SCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHh-CCcHHHHHHHHHHHHHC
Confidence 4444445555544444433 588999999999 89999999999998764
No 382
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=51.80 E-value=13 Score=24.05 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHhC--cchhHHHHHHH
Q 021438 264 DTKPLKEISIVTR--VAEGTIKNVYK 287 (312)
Q Consensus 264 ~~~~~~~Ia~~~~--vs~~ti~~~~k 287 (312)
..+|++++|+.+| ++..||.+.-+
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 4578999999999 99999987543
No 383
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=51.37 E-value=19 Score=25.87 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHh-CcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVT-RVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~-~vs~~ti~~~~kel~~~ 292 (312)
.-+.++.+|++.+ |++..|+..+.+.|.+.
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 66 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGK 66 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHC
Confidence 3468899999999 59999999999999885
No 384
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=51.33 E-value=10 Score=29.40 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH
Q 021438 250 VAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 250 iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
|..||+-+..+ .|+ ..|+++||+.+|||..|+=.+|+.
T Consensus 13 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (188)
T 3qkx_A 13 IFSATDRLMAR-EGLNQLSMLKLAKEANVAAGTIYLYFKN 51 (188)
T ss_dssp HHHHHHHHHHH-SCSTTCCHHHHHHHHTCCHHHHHHHSSS
T ss_pred HHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHHcCC
Confidence 44455554444 465 489999999999999999988753
No 385
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=51.11 E-value=31 Score=26.03 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.++++.+||+.++++..|+....+.|.+.
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 346899999999999999999999999885
No 386
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=51.11 E-value=12 Score=25.96 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhCcchhHHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
.+++.++|+.+|++..||.+..+
T Consensus 21 gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 57899999999999999997654
No 387
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=51.08 E-value=6.7 Score=22.05 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=10.7
Q ss_pred CCCceEcCCCccc
Q 021438 20 SAGDTICSECGLV 32 (312)
Q Consensus 20 ~~G~~vC~~CG~V 32 (312)
..|+.+|..||.+
T Consensus 2 k~gDW~C~~C~~~ 14 (32)
T 2lk0_A 2 KFEDWLCNKCCLN 14 (32)
T ss_dssp CCSEEECTTTCCE
T ss_pred CCCCCCcCcCcCC
Confidence 4589999999887
No 388
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=51.06 E-value=18 Score=29.39 Aligned_cols=32 Identities=6% Similarity=0.090 Sum_probs=26.8
Q ss_pred HHHHHhcCCCCCHHHHHHHhCcchhHHHHHHH
Q 021438 256 YIITQLSNDTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 256 yla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
|....-.++..+|+++|+..|+|+..|.+..+
T Consensus 33 y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~ 64 (189)
T 3mky_B 33 YASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp HHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHhcCcccCHHHHHHHHCCCHHHHHHHHH
Confidence 55555567889999999999999999997765
No 389
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=51.05 E-value=15 Score=27.53 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=26.3
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
..++.+||+.++++..|+...++.|.+.
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 6889999999999999999999999886
No 390
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=50.75 E-value=32 Score=23.38 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
...+.+|||+.+ |++..++......+.+.|+.
T Consensus 35 ~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 35 QGLPNKMIARRL-DITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp TTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 347899999999 89999999998888888864
No 391
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=50.66 E-value=11 Score=26.71 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..+||+++|+.+|++..||.+.-
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E 64 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWE 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 35789999999999999998753
No 392
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=50.58 E-value=13 Score=29.01 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH
Q 021438 250 VAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 250 iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
|..|++-+..+ .|+ ..|+++||+.+|||..|+-.+|+.
T Consensus 7 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 45 (194)
T 3bqz_B 7 ILGVAKELFIK-NGYNATTTGEIVKLSESSKGNLYYHFKT 45 (194)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHTTCCHHHHHHHTSS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 44444444443 454 589999999999999999988753
No 393
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.47 E-value=14 Score=27.71 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFP 291 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~ 291 (312)
..+..+||+.+|+|..||.+.++...+
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~~ 48 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPVS 48 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGGG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcccc
Confidence 468999999999999999988876544
No 394
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=50.39 E-value=11 Score=31.70 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.+++..++|+.+|||..|||..++.|...
T Consensus 49 G~~L~e~~La~~lgVSRtpVREAL~~L~~e 78 (239)
T 2hs5_A 49 GARLSEPDICAALDVSRNTVREAFQILIED 78 (239)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCEeCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567889999999999999999999998764
No 395
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=50.37 E-value=17 Score=27.00 Aligned_cols=28 Identities=7% Similarity=-0.044 Sum_probs=26.2
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.++.+||+.++++..|+....+.|.+.
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 6899999999999999999999999885
No 396
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=50.18 E-value=30 Score=25.71 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHH
Q 021438 250 VAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDL 289 (312)
Q Consensus 250 iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel 289 (312)
+..+.-|+-.. ...++++.++|+.+|+|+.++.+.+++.
T Consensus 13 i~~~~~~i~~~-~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 13 IHSILDWIEDN-LESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHTT-TTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-cCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 33344444333 3445899999999999999999888876
No 397
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=50.14 E-value=51 Score=24.12 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+.++.+||+.++++.+|+....+.|.+.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 36899999999999999999999999885
No 398
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=50.07 E-value=22 Score=27.14 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+-.+++.+||+.++++..|+....+.|.+.
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 347899999999999999999999999885
No 399
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=49.99 E-value=46 Score=26.38 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+..+++.+||+.++++.+|+....+.|.+.
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 84 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKN 84 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999874
No 400
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=49.95 E-value=18 Score=27.26 Aligned_cols=28 Identities=4% Similarity=0.111 Sum_probs=26.2
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.++.+||+.++++..|+....+.|.+.
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 6899999999999999999999999875
No 401
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=49.87 E-value=24 Score=26.19 Aligned_cols=37 Identities=5% Similarity=0.009 Sum_probs=29.7
Q ss_pred HHHHHHHhCCC-CCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 021438 156 LYIACRQENKP-RTVKEFCSVANGTTKKEIGRAKEFIVK 193 (312)
Q Consensus 156 ly~acr~~~~p-~tl~dia~~~~~v~~~~i~~~~~~l~~ 193 (312)
+|.+....+-| .|..||++.+ +++..++.+.++.|.+
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l-~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSL-KLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 44444456667 8999999999 7999999999888774
No 402
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=49.79 E-value=42 Score=22.56 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
-+.+..||++.+ |++..++.+.++.|.+.
T Consensus 13 ~~~s~~eLa~~l-gvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEAL-AVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 479999999999 89999999998888754
No 403
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=49.62 E-value=6.6 Score=26.29 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCC----ceeeeCCCCceEcCCCccc
Q 021438 2 ADSYCADCKRLT----EVVFDHSAGDTICSECGLV 32 (312)
Q Consensus 2 ~~~~Cp~Cg~~~----~ii~D~~~G~~vC~~CG~V 32 (312)
.+..|.-||... .+|.- .|.+||.+|=..
T Consensus 17 ~~~~CSFCGK~e~eV~~LIaG--pgvyICdeCI~~ 49 (67)
T 1ovx_A 17 KLLYCSFCGKSQHEVRKLIAG--PSVYICDECVDL 49 (67)
T ss_dssp -CCCCTTTCCCTTTSSSEEEC--SSCEEEHHHHHH
T ss_pred CCcEecCCCCCHHHHcccCCC--CCCChhHHHHHH
Confidence 356899999742 44443 477999998443
No 404
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=49.51 E-value=41 Score=24.75 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
...++.+||+.++++.+|+....+.|.+.
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 80 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQE 80 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 56889999999999999999999999874
No 405
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=49.47 E-value=36 Score=26.20 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+..+++.+||+.++++..|+....+.|.+.
T Consensus 60 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 89 (168)
T 3u2r_A 60 PEGMATLQIADRLISRAPDITRLIDRLDDR 89 (168)
T ss_dssp TSCEEHHHHHHHC---CTHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 357899999999999999999999999874
No 406
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=49.22 E-value=20 Score=24.61 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHH
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
...++|.++|+.+|++..||.+.-+
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3468999999999999999987654
No 407
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=49.18 E-value=52 Score=24.00 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=37.4
Q ss_pred HhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhccccccCCCC---HHHHHHHHHhhcCCCHHH
Q 021438 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIH---ASDYLRRFCSNLGMTNQA 227 (312)
Q Consensus 162 ~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~---p~~~i~r~~~~L~l~~~v 227 (312)
......|+.++|+.+ |++...|.+... |. .. +... ...++.+++..||++.+.
T Consensus 16 R~~~glSq~eLA~~~-gis~~~is~iE~------G~-----~~-~~p~~~~~~~~l~~iA~~Lgv~~~~ 71 (112)
T 2wus_R 16 REERRITLLDASLFT-NINPSKLKRIEE------GD-----LK-GLDAEVYIKSYIKRYSEFLELSPDE 71 (112)
T ss_dssp HHTTTCCHHHHHHHS-SCCHHHHHHHHH------TC-----CT-TSSCHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHcCCCHHHHHHHH-CcCHHHHHHHHC------CC-----CC-CCcchhHHHHHHHHHHHHhCcCHHH
Confidence 456779999999999 899998877632 21 01 1112 356899999999998653
No 408
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=49.13 E-value=25 Score=24.61 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=27.2
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 166 p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
..+.+||+..+ +++..++......+.+.|+.
T Consensus 44 G~s~~eIA~~L-~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 44 GFTNQEIADAL-HLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp TCCHHHHHHHH-TCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHCC
Confidence 35799999999 89999999999999888875
No 409
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=48.89 E-value=19 Score=27.15 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHh-CcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVT-RVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~-~vs~~ti~~~~kel~~~ 292 (312)
.-+.++.+|++.+ |++..|+..+.+.|.+.
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 3468899999999 79999999999999885
No 410
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=48.87 E-value=15 Score=28.94 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 150 AIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 150 ~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
.-+-+.+|+|.. .+.|.+..+||+.. +++...+++.+..|.+.
T Consensus 13 yAlr~l~~La~~-~~~~~s~~~IA~~~-~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 13 VAVHSILYLDAH-RDSKVASRELAQSL-HLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHTT-TTSCBCHHHHHHHH-TSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 334556777754 46789999999999 89999999999888754
No 411
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=48.86 E-value=15 Score=28.62 Aligned_cols=30 Identities=7% Similarity=0.110 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.-+.+..+||+.+|++.+||...++.|.+.
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346889999999999999999999999874
No 412
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=48.84 E-value=64 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.++.+||+.++++.+|+.+..+.|.+.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 78 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRK 78 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 46889999999999999999999999875
No 413
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=48.81 E-value=12 Score=29.57 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH
Q 021438 248 ISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 248 ~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
.-|..|++=+... .|+ ..|+++||+.+|||..||-.+|+.
T Consensus 17 ~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~s 57 (212)
T 3knw_A 17 QHILDSGFHLVLR-KGFVGVGLQEILKTSGVPKGSFYHYFES 57 (212)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cCCccCCHHHHHHHhCCChHHHHHHCCC
Confidence 4455555555544 464 689999999999999999988753
No 414
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=48.78 E-value=4.6 Score=28.10 Aligned_cols=23 Identities=26% Similarity=0.759 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCceeeeCCCCceEcCCCcc
Q 021438 1 MADSYCADCKRLTEVVFDHSAGDTICSECGL 31 (312)
Q Consensus 1 ~~~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~ 31 (312)
|...-|.+|+- |.+ .+ .|.+||.
T Consensus 21 m~~rAC~~C~~---v~~-~d----~CPnCgs 43 (81)
T 3p8b_A 21 MSEKACRHCHY---ITS-ED----RCPVCGS 43 (81)
T ss_dssp -CCEEETTTCB---EES-SS----SCTTTCC
T ss_pred hhHHHHhhCCC---ccC-CC----CCCCCCC
Confidence 44456777775 222 11 3777775
No 415
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=48.73 E-value=12 Score=29.07 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH
Q 021438 248 ISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 248 ~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
.-|..|++-+..+ .|+ ..|+++||+.+|||..|+=.+|+.
T Consensus 12 ~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 52 (195)
T 3ppb_A 12 QAILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFPS 52 (195)
T ss_dssp HHHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 3455555555554 464 589999999999999999988753
No 416
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=48.71 E-value=12 Score=29.25 Aligned_cols=38 Identities=8% Similarity=0.172 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH
Q 021438 250 VAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 250 iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
|..|++=+..+ .|+ ..|+++||+.+|||..|+=.+|+.
T Consensus 19 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (203)
T 3f1b_A 19 MLDAAVDVFSD-RGFHETSMDAIAAKAEISKPMLYLYYGS 57 (203)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHCCS
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHhCCchHHHHHHhCC
Confidence 44455544443 364 689999999999999999988753
No 417
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=48.53 E-value=13 Score=25.69 Aligned_cols=23 Identities=0% Similarity=0.098 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhCcchhHHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
.++|.++|+.+|++..||.+.-+
T Consensus 30 glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 30 GLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57899999999999999987643
No 418
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=48.31 E-value=21 Score=24.99 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=26.3
Q ss_pred CCCCCHHHH----HHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEI----SIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~I----a~~~~vs~~ti~~~~kel~~~ 292 (312)
....++.+| |+.++++..|+.+..+.|.+.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 346889999 899999999999999999884
No 419
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=48.23 E-value=25 Score=28.41 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=26.8
Q ss_pred hcCCCCCHHHHHHHhCcc-hhHHHHHHHHHHhh
Q 021438 261 LSNDTKPLKEISIVTRVA-EGTIKNVYKDLFPH 292 (312)
Q Consensus 261 ~~~~~~~~~~Ia~~~~vs-~~ti~~~~kel~~~ 292 (312)
..|.+.|++++|+.+|++ ..||.+..+.|.+.
T Consensus 21 ~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~ 53 (202)
T 1jhf_A 21 QTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK 53 (202)
T ss_dssp HHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HhCCCccHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 346666899999999999 99999998887764
No 420
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=48.18 E-value=19 Score=27.57 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
...++.++|+.+|+|..|+++.++.|.+.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 45789999999999999999999999875
No 421
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=47.84 E-value=19 Score=28.16 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHH
Q 021438 248 ISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 248 ~~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
.-|..||+=+.++ .|+..|.++||+.+|||..||=.+|+
T Consensus 18 ~~Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tlY~~F~ 56 (194)
T 2q24_A 18 DKILAAAVRVFSE-EGLDAHLERIAREAGVGSGTLYRNFP 56 (194)
T ss_dssp HHHHHHHHHHHHH-HCTTCCHHHHHHHTTCCHHHHHHHCC
T ss_pred HHHHHHHHHHHHh-cCcCCCHHHHHHHhCCChHHHHHHcC
Confidence 3444444444443 35558999999999999999998774
No 422
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=47.83 E-value=53 Score=24.45 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=25.2
Q ss_pred CCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++.+||+.+++++.||.+..+.|.+.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~k 78 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 789999999999999999999998875
No 423
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=47.70 E-value=24 Score=27.03 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 021438 147 NQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (312)
Q Consensus 147 ~~~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~ 193 (312)
+.+.-+-+.+|+|-+ .+ + +..+|++.. +++...+.+.+..|.+
T Consensus 7 ~~~yAl~~L~~La~~-~~-~-s~~~IA~~~-~i~~~~l~kIl~~L~~ 49 (145)
T 1xd7_A 7 RLAVAIHILSLISMD-EK-T-SSEIIADSV-NTNPVVVRRMISLLKK 49 (145)
T ss_dssp HHHHHHHHHHHHHTC-SC-C-CHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CC-C-CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344556677777754 44 5 999999999 8999999999988874
No 424
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=47.66 E-value=19 Score=27.10 Aligned_cols=29 Identities=10% Similarity=0.058 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
..+++.+||+.++++.+|+....+.|.+.
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 84 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKK 84 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 57899999999999999999999999874
No 425
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=47.55 E-value=32 Score=26.31 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 253 AVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 253 Aaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.+|||.. .+ + +.++||+..+++...+++.+..|.+.
T Consensus 14 ~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 14 ILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp HHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44555543 44 5 99999999999999999999999875
No 426
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=47.52 E-value=19 Score=23.68 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=18.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHH
Q 021438 167 RTVKEFCSVANGTTKKEIGRAK 188 (312)
Q Consensus 167 ~tl~dia~~~~~v~~~~i~~~~ 188 (312)
.|++||+..+ |++..++.+++
T Consensus 1 ~T~~diA~~a-GVS~sTVSrvL 21 (65)
T 1uxc_A 1 MKLDEIARLA-GVSRTTASYVI 21 (65)
T ss_dssp CCHHHHHHHH-TSCHHHHHHHH
T ss_pred CCHHHHHHHH-CcCHHHHHHHH
Confidence 3789999999 89999988874
No 427
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=47.51 E-value=25 Score=26.61 Aligned_cols=29 Identities=3% Similarity=0.194 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
...++.+||+.++++..|+....+.|.+.
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999885
No 428
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=47.50 E-value=18 Score=27.69 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++++.+||+.++++..|+....+.|.+.
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 46899999999999999999999999885
No 429
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=47.47 E-value=21 Score=29.38 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.+++.++||+.+++|+.|++...+.|.+.
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~ 57 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHL 57 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 356888999999999999999999999885
No 430
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=47.46 E-value=8.1 Score=24.55 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=14.3
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECG 30 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG 30 (312)
..||.|++...++. ..|..|+
T Consensus 10 ~~C~~C~GsG~~i~------~~C~~C~ 30 (53)
T 3lcz_A 10 TTCPNCNGSGREEP------EPCPKCL 30 (53)
T ss_dssp EECTTTTTSCEETT------EECTTTT
T ss_pred ccCcCCcccccCCC------CcCCCCC
Confidence 47999988555543 4577774
No 431
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=47.46 E-value=18 Score=28.57 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHHH
Q 021438 248 ISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKDL 289 (312)
Q Consensus 248 ~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~kel 289 (312)
.-|..|++-+..+ .|+ ..|.++||+.+|||..||=.+|+.-
T Consensus 19 ~~Il~aa~~lf~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 60 (213)
T 2qtq_A 19 DLLLQTASNIMRE-GDVVDISLSELSLRSGLNSALVKYYFGNK 60 (213)
T ss_dssp HHHHHHHHHHHHH-HTSSCCCHHHHHHHHCCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHH-cCcccccHHHHHHHhCCChhhHhHhcCCH
Confidence 3455555555544 454 5899999999999999999888543
No 432
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=47.44 E-value=7.6 Score=21.97 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=10.8
Q ss_pred CCCceEcCCCccc
Q 021438 20 SAGDTICSECGLV 32 (312)
Q Consensus 20 ~~G~~vC~~CG~V 32 (312)
..|+.+|..||.+
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 4689999999877
No 433
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=47.39 E-value=7.7 Score=24.47 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=17.4
Q ss_pred CCCCCCCCCCC----CceeeeCCCCceEcCCCc
Q 021438 2 ADSYCADCKRL----TEVVFDHSAGDTICSECG 30 (312)
Q Consensus 2 ~~~~Cp~Cg~~----~~ii~D~~~G~~vC~~CG 30 (312)
.+..|.-||.. ..+|.- .|..||.+|=
T Consensus 10 ~~~~CSFCGk~~~ev~~LIaG--pgv~IC~eCi 40 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIAG--PSVYICDECV 40 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEEC--SSCEEEHHHH
T ss_pred CCcEecCCCCCHHHhcccCCC--CCCEehHHHH
Confidence 34679999963 234443 3678998873
No 434
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=47.12 E-value=14 Score=29.04 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHHHH
Q 021438 250 VAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKDLF 290 (312)
Q Consensus 250 iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~kel~ 290 (312)
|..|++-+..+ .|+ ..|.++||+.+|||..|+=.+|+.-.
T Consensus 17 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (202)
T 3lwj_A 17 ILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFVDKE 57 (202)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcCCHH
Confidence 44455444443 365 58999999999999999998875433
No 435
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=47.08 E-value=11 Score=28.27 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=15.7
Q ss_pred CCCHHHHHHHhCcchhHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNV 285 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~ 285 (312)
.+||+++|+.+|+|..||++.
T Consensus 84 glsq~~la~~~g~s~~~i~~~ 104 (133)
T 3o9x_A 84 SLTQKEASEIFGGGVNAFSRY 104 (133)
T ss_dssp TCCHHHHHHHHCSCTTHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 567777888788887777754
No 436
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=47.01 E-value=22 Score=31.34 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+..++.+++|+.++||+.||++..+.|.+.
T Consensus 17 ~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~ 46 (321)
T 1bia_A 17 GEFHSGEQLGETLGMSRAAINKHIQTLRDW 46 (321)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 446899999999999999999999999874
No 437
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=46.94 E-value=26 Score=24.13 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=25.5
Q ss_pred CCCHHHHHHHhCcchh-HHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEG-TIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~-ti~~~~kel~~~ 292 (312)
+.+..+||+.+|++.. ++++....|.+.
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~~Le~e 53 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHHHHHHC
Confidence 5789999999999999 999999998874
No 438
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=46.83 E-value=17 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=27.7
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+.+.++.+||+.++++.+|+....+.|.+.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~ 78 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNA 78 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3457899999999999999999999999875
No 439
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=46.75 E-value=29 Score=22.15 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=19.4
Q ss_pred CHHHHHHHhCcchhHHHHHHH
Q 021438 267 PLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 267 ~~~~Ia~~~~vs~~ti~~~~k 287 (312)
++.++|+.+|+|..||.+..+
T Consensus 15 s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 899999999999999998774
No 440
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=46.51 E-value=34 Score=25.97 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.++++.+||+.++++.+|+....+.|.+.
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~ 78 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHPTSVTNTVDRLVRS 78 (147)
T ss_dssp GGEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 345889999999999999999999999874
No 441
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=46.32 E-value=12 Score=24.86 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhccccccCCCCHH--HHHHHHHhhcCCCH
Q 021438 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHAS--DYLRRFCSNLGMTN 225 (312)
Q Consensus 164 ~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~--~~i~r~~~~L~l~~ 225 (312)
....|++||+..+ |++..++.+++ +- -+.+.++ .-|..++.+||..+
T Consensus 7 ~~~~t~~diA~~a-GVS~sTVSr~l-------n~-------~~~vs~~t~~rV~~~a~~lgY~p 55 (67)
T 2l8n_A 7 ETAATMKDVALKA-KVSTATVSRAL-------MN-------PDKVSQATRNRVEKAAREVGYLP 55 (67)
T ss_dssp --CCCHHHHHHHT-TCCHHHHHHTT-------TC-------CCCSCHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCHHHHHHHH-CCCHHHHHHHH-------cC-------CCCCCHHHHHHHHHHHHHhCCCc
Confidence 3357999999999 89999987763 21 1223332 34666677777644
No 442
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=46.11 E-value=8.7 Score=26.63 Aligned_cols=14 Identities=21% Similarity=0.778 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCce
Q 021438 1 MADSYCADCKRLTEV 15 (312)
Q Consensus 1 ~~~~~Cp~Cg~~~~i 15 (312)
|....||.||. ..+
T Consensus 28 ~~k~FCp~CGn-~TL 41 (79)
T 2con_A 28 MNRVFCGHCGN-KTL 41 (79)
T ss_dssp SSCCSCSSSCC-SCC
T ss_pred cccccccccCc-ccc
Confidence 56678888887 344
No 443
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=46.09 E-value=31 Score=27.32 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhC--cchhHHHHHHHHHHhhh
Q 021438 249 SVAAAVIYIITQLSNDTKPLKEISIVTR--VAEGTIKNVYKDLFPHL 293 (312)
Q Consensus 249 ~iaaAaiyla~~~~~~~~~~~~Ia~~~~--vs~~ti~~~~kel~~~~ 293 (312)
.+.-|++|.+ +.+++.++++++++ ++...++....+|.+..
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y 52 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDY 52 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHh
Confidence 3455666654 67899999999999 99999999999997754
No 444
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=46.07 E-value=14 Score=29.19 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHHH
Q 021438 249 SVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKDL 289 (312)
Q Consensus 249 ~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~kel 289 (312)
-|..|++=+..+ .|+ ..|+++||+.+|||..|+-.+|+.-
T Consensus 18 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 58 (220)
T 3lhq_A 18 HILDVALRLFSQ-QGVSATSLAEIANAAGVTRGAIYWHFKNK 58 (220)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCceeehhhcCCH
Confidence 344455554443 365 4899999999999999999887543
No 445
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=45.99 E-value=34 Score=21.86 Aligned_cols=30 Identities=13% Similarity=0.011 Sum_probs=25.5
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 021438 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (312)
Q Consensus 166 p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~ 196 (312)
..+..||+..+ |++..++.+...+..+.|.
T Consensus 31 g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 31 GLSYADAAAVC-GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp CCCHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 47899999999 8999999888877777665
No 446
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=45.79 E-value=18 Score=30.19 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=26.4
Q ss_pred CCCCC-HHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 263 NDTKP-LKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 263 ~~~~~-~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
|.+++ .+++|+.+|||..|||..++.|...
T Consensus 25 G~~LpsE~~La~~lgVSRtpVREAL~~L~~~ 55 (239)
T 2di3_A 25 GDHLPSERALSETLGVSRSSLREALRVLEAL 55 (239)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 66785 7799999999999999999998764
No 447
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=45.69 E-value=38 Score=27.22 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 021438 156 LYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (312)
Q Consensus 156 ly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~ 193 (312)
|.-..+.+|.|.|++||++.+ |++..++.+.++.|.+
T Consensus 14 I~~~~~~~g~~~s~~eia~~l-gl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 14 IEEFIEKNGYPPSVREIARRF-RITPRGALLHLIALEK 50 (196)
T ss_dssp HHHHHHHHSSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHc-CCCcHHHHHHHHHHHH
Confidence 333446789999999999999 8998887777766653
No 448
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=45.69 E-value=16 Score=27.06 Aligned_cols=29 Identities=0% Similarity=0.028 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.++.+||+.++++.+|+....+.|.+.
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 46889999999999999999999999885
No 449
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=45.60 E-value=14 Score=29.31 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH
Q 021438 248 ISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 248 ~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
.-|..|++=+..+ .|+ ..|+++||+.+|||..|+=.+|..
T Consensus 34 ~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 74 (218)
T 3dcf_A 34 TQIIKVATELFRE-KGYYATSLDDIADRIGFTKPAIYYYFKS 74 (218)
T ss_dssp HHHHHHHHHHHHH-TCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 3344455544443 465 589999999999999999988753
No 450
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=45.43 E-value=68 Score=21.66 Aligned_cols=51 Identities=2% Similarity=-0.052 Sum_probs=35.9
Q ss_pred hCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHHHHH
Q 021438 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVK 229 (312)
Q Consensus 163 ~~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~ 229 (312)
.....|..++++.+ |++...|.+... +. . ..+...+.+++..|++++....
T Consensus 24 ~~~gltq~elA~~~-gis~~~is~~E~------G~-------~--~p~~~~l~~ia~~l~v~~~~~~ 74 (86)
T 3eus_A 24 LDAGLTQADLAERL-DKPQSFVAKVET------RE-------R--RLDVIEFAKWMAACEGLDVVSE 74 (86)
T ss_dssp HHTTCCHHHHHHHT-TCCHHHHHHHHT------TS-------S--CCBHHHHHHHHHHTTCGGGHHH
T ss_pred HHcCCCHHHHHHHh-CcCHHHHHHHHC------CC-------C--CCCHHHHHHHHHHcCCCcHHHH
Confidence 44568999999999 899988776631 11 1 1245677899999999875433
No 451
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=45.32 E-value=21 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-++++.+||+.++++.+|+....+.|.+.
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 36889999999999999999999999885
No 452
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=45.29 E-value=37 Score=26.23 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=26.2
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+++.+||+.++++..|+...++.|.+.
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 6899999999999999999999999875
No 453
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=45.21 E-value=15 Score=26.18 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..++|+++|+.+|++..||.+.-
T Consensus 40 ~gltq~elA~~~gis~~~is~iE 62 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIE 62 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45789999999999999998754
No 454
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=45.21 E-value=6 Score=30.62 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=17.5
Q ss_pred ceeeeCCCCceEcCCCcccccC
Q 021438 14 EVVFDHSAGDTICSECGLVLEA 35 (312)
Q Consensus 14 ~ii~D~~~G~~vC~~CG~Vv~e 35 (312)
.+..+...+...|.+||+...-
T Consensus 61 ~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 61 EIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp EEEEEEECCEEEETTTCCEEEG
T ss_pred EEEEEecCCcEECCCCCCEEec
Confidence 5666677889999999998653
No 455
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=45.20 E-value=9.4 Score=29.81 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCcchhHHHHHHHH
Q 021438 249 SVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 249 ~iaaAaiyla~~~~~~~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
-|..|++=+..+- ...|.++||+.+|||..|+=.+|+.
T Consensus 18 ~Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (190)
T 2v57_A 18 AILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHRYYPE 55 (190)
T ss_dssp HHHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHcCC
Confidence 3444444444443 6789999999999999999988753
No 456
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=45.20 E-value=16 Score=28.89 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH
Q 021438 249 SVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 249 ~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
-|..|++-+..+ .|+ ..|.++||+.+|||..|+-++|+.
T Consensus 22 ~Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 61 (212)
T 1pb6_A 22 AILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHHH-cCcchhhHHHHHHHHCCChhHHHHhCCC
Confidence 344455544443 364 588999999999999999988854
No 457
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=45.14 E-value=17 Score=27.01 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
+.++.+||+.++++.+|+....+.|.+.
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLERD 77 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 5889999999999999999999999885
No 458
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=45.13 E-value=2.9 Score=33.01 Aligned_cols=31 Identities=10% Similarity=-0.018 Sum_probs=28.1
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.|.+++..++|+.+|+|..|++.+++.|.+.
T Consensus 24 ~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~ 54 (163)
T 2gqq_A 24 KDGRISNVELSKRVGLSPTPCLERVRRLERQ 54 (163)
T ss_dssp HCSSCCTTGGGTSSSCCTTTSSSTHHHHHHH
T ss_pred hCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4677899999999999999999999999875
No 459
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.06 E-value=30 Score=24.26 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=27.0
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 021438 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (312)
Q Consensus 167 ~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 197 (312)
.+.+||+..+ |++..++...+..+.+.|+.
T Consensus 43 ~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 43 LTNKQIADRM-FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCHHHHHHHH-TCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 4789999999 89999999999999988875
No 460
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=45.01 E-value=17 Score=26.29 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhCcchhHHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
.+||+++|+.+|+|..||.+.-+
T Consensus 22 glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 22 GLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 47899999999999999997654
No 461
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=44.71 E-value=23 Score=28.37 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=26.8
Q ss_pred CCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
.+.++||+.+++|+.|++.+.+.|++.++.
T Consensus 170 ~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 170 LPNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999998753
No 462
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=44.66 E-value=15 Score=28.79 Aligned_cols=44 Identities=7% Similarity=0.011 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 248 ISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 248 ~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.-|..|++=+..+ .|+ ..|+++||+.+|||..|+=.+|+.-.+.
T Consensus 11 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 55 (206)
T 3dew_A 11 SRLMEVATELFAQ-KGFYGVSIRELAQAAGASISMISYHFGGKEGL 55 (206)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHhc-CCcccCcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3455555555444 465 6899999999999999999888644443
No 463
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=44.61 E-value=15 Score=25.62 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCcchhHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
..+++.++|+.+|++..||.+.-
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e 38 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYE 38 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 35789999999999999998643
No 464
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=44.57 E-value=41 Score=25.66 Aligned_cols=31 Identities=3% Similarity=0.046 Sum_probs=27.3
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+...++.+||+.++++.+|+....+.|.+.
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~ 73 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQLEEK 73 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 3556789999999999999999999999874
No 465
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=44.54 E-value=16 Score=29.81 Aligned_cols=41 Identities=7% Similarity=0.174 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHHHH
Q 021438 249 SVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKDLF 290 (312)
Q Consensus 249 ~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~kel~ 290 (312)
-|..|++=+..+ .|+ ..|+++||+.+|||..||=..|+.-.
T Consensus 47 ~Il~aA~~l~~~-~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe 88 (229)
T 3bni_A 47 RILDACADLLDE-VGYDALSTRAVALRADVPIGSVYRFFGNKR 88 (229)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHh-cChhhccHHHHHHHHCCCchhHHHHcCCHH
Confidence 355555555444 465 48999999999999999998875433
No 466
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=44.43 E-value=12 Score=29.15 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH
Q 021438 250 VAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 250 iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
|..|++-+..+ .|+ ..|.++||+.+|||..|+=.+|+.
T Consensus 13 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (194)
T 2g7s_A 13 ILQCARTLIIR-GGYNSFSYADISQVVGIRNASIHHHFPS 51 (194)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchHHHHHcCC
Confidence 44455544444 464 589999999999999999988754
No 467
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=44.42 E-value=30 Score=26.51 Aligned_cols=29 Identities=7% Similarity=0.159 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-.+++.+||+.++++..|+....+.|.+.
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 87 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLAN 87 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 37899999999999999999999999874
No 468
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=44.41 E-value=52 Score=26.99 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 164 ~~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
..|.|..|||+.+ |++..++.+.+++|.+.
T Consensus 191 ~~~lt~~~lA~~l-G~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 191 DLKLSHQAIAEAI-GSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CSCCCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHHH-CCcHHHHHHHHHHHHHC
Confidence 3578999999999 89999999999998754
No 469
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=44.20 E-value=23 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++++.+||+.++++.+|+....+.|.+.
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~ 82 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQS 82 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 56889999999999999999999999874
No 470
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=44.11 E-value=22 Score=26.85 Aligned_cols=29 Identities=3% Similarity=0.016 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-+.++.+||+.++++.+|+....+.|.+.
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 82 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLISL 82 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 35889999999999999999999999885
No 471
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=44.07 E-value=32 Score=23.78 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=22.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 021438 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (312)
Q Consensus 167 ~tl~dia~~~~~v~~~~i~~~~~~l~~~l~ 196 (312)
.+.+|||..+ |++..++...+.+..+.|.
T Consensus 54 ~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 54 WSTAQIATDL-GIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CCHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 5799999999 8999888777666555543
No 472
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=44.03 E-value=25 Score=31.78 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=28.0
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+-++|..|||+.+|+|..|+.++.++|.+.
T Consensus 27 ~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 27 QLGPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp SSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3457899999999999999999999999984
No 473
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=43.99 E-value=35 Score=23.66 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=27.6
Q ss_pred HHhCCCCCHHHHHHHhcCCCHHH-HHHHHHHHHHH
Q 021438 161 RQENKPRTVKEFCSVANGTTKKE-IGRAKEFIVKH 194 (312)
Q Consensus 161 r~~~~p~tl~dia~~~~~v~~~~-i~~~~~~l~~~ 194 (312)
..++.+.++.|+++.+ +++..+ +.+.++.|.+.
T Consensus 25 ~~~~~~~t~~eLa~~l-~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKAS-GVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHTTCCCCHHHHHHHH-CCCHHHHHTTHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHH-CCCchHHHHHHHHHHHHC
Confidence 4455589999999999 899999 99998887653
No 474
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=43.81 E-value=23 Score=27.93 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHHHHh
Q 021438 247 PISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKDLFP 291 (312)
Q Consensus 247 P~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~kel~~ 291 (312)
-.-|..|++-+..+ .|+ ..|+++||+.+|||..|+=.+|+.-.+
T Consensus 19 r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (207)
T 2rae_A 19 QDRISTVGIELFTE-QGFDATSVDEVAEASGIARRTLFRYFPSKNA 63 (207)
T ss_dssp HHHHHHHHHHHHHH-HCTTTSCHHHHHHHTTSCHHHHHHHCSSTTT
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcchHhhhCCCHHH
Confidence 34455555555544 465 589999999999999999888754333
No 475
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=43.47 E-value=69 Score=24.23 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.++++.+||+.++++.+|+....+.|.+.
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~ 79 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRD 79 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 45899999999999999999999999764
No 476
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=43.39 E-value=14 Score=25.19 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.3
Q ss_pred CCCHHHHHHHhCcchhHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNV 285 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~ 285 (312)
..+..|+|+.+|||..|||..
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~y 25 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAW 25 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHH
Confidence 356899999999999999954
No 477
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=43.38 E-value=14 Score=33.80 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCCCCCCC-CceeeeCCCCceEcCCCcc
Q 021438 5 YCADCKRL-TEVVFDHSAGDTICSECGL 31 (312)
Q Consensus 5 ~Cp~Cg~~-~~ii~D~~~G~~vC~~CG~ 31 (312)
.||-|+.. .++..+...|...|-.||.
T Consensus 36 ~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred eCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 69999964 3588888899999999993
No 478
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=43.36 E-value=23 Score=27.04 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
-++++.+||+.++++..|+....+.|.+.
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 91 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDE 91 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999874
No 479
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=43.19 E-value=15 Score=28.78 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHhCcchhHHHHHHHH
Q 021438 250 VAAAVIYIITQLSNDT-KPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 250 iaaAaiyla~~~~~~~-~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
|..|++-+... .|+. .|.++||+.+|||..|+=.+|+.
T Consensus 22 Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 60 (206)
T 3kz9_A 22 LMEIALEVFAR-RGIGRGGHADIAEIAQVSVATVFNYFPT 60 (206)
T ss_dssp HHHHHHHHHHH-SCCSSCCHHHHHHHHTSCHHHHHHHCCS
T ss_pred HHHHHHHHHHh-cCcccccHHHHHHHhCCCHHHHHHHcCC
Confidence 45555555443 4654 89999999999999999988753
No 480
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=43.16 E-value=57 Score=20.18 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHhhcCCCHH
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQ 226 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (312)
...|..+++..+ |++...|.+... + .. ..+...+.+++..|+++.+
T Consensus 13 ~g~s~~~lA~~~-gis~~~i~~~e~------g-------~~--~~~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 13 KKISQSELAALL-EVSRQTINGIEK------N-------KY--NPSLQLALKIAYYLNTPLE 58 (66)
T ss_dssp TTCCHHHHHHHH-TSCHHHHHHHHT------T-------SC--CCCHHHHHHHHHHTTSCHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHc------C-------CC--CCCHHHHHHHHHHHCcCHH
Confidence 457899999999 899888766532 1 11 1145678899999998864
No 481
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=42.93 E-value=62 Score=25.70 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHHHhC---CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 147 NQEAIVAACLYIACRQEN---KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 147 ~~~~iaaAcly~acr~~~---~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
+...-.+..+..-+...+ .|.|..++|+.+ |++..++.+..++|.+.
T Consensus 147 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~l-g~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 147 SLDKRVASFLLEETSIEGTNELKITHETIANHL-GSHREVITRMLRYFQVE 196 (220)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhhhcCCceecCCHHHHHHHh-CCCHHHHHHHHHHHHHC
Confidence 333444444444444433 589999999999 89999999999988754
No 482
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=42.77 E-value=12 Score=23.29 Aligned_cols=24 Identities=25% Similarity=0.703 Sum_probs=18.3
Q ss_pred CCCCCCCCCCceeeeCCCCceEcCCCccccc
Q 021438 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~Vv~ 34 (312)
..|-.|++ .++ .| +.|.+|++..=
T Consensus 15 t~C~~C~k---~i~---~G-~kC~~Ck~~cH 38 (49)
T 1kbe_A 15 QVCNVCQK---SMI---FG-VKCKHCRLKCH 38 (49)
T ss_dssp CCCSSSCC---SSC---CE-EEETTTTEEES
T ss_pred cCccccCc---eeE---Cc-CCCCCCCCccc
Confidence 68999997 234 46 78999998753
No 483
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=42.71 E-value=82 Score=23.12 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHH
Q 021438 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190 (312)
Q Consensus 149 ~~iaaAcly~acr~~~~p~tl~dia~~~~~v~~~~i~~~~~~ 190 (312)
..+..+.-|+-. ....+.++.++|+.+ |++...|.+.+++
T Consensus 11 ~~i~~~~~~i~~-~~~~~~sl~~lA~~~-~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 11 ITIHSILDWIED-NLESPLSLEKVSERS-GYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHHHT-TTTSCCCCHHHHHHS-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-ccCCCCCHHHHHHHH-CcCHHHHHHHHHH
Confidence 344444455442 335569999999999 8999998887765
No 484
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=42.59 E-value=17 Score=28.05 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH-HHh
Q 021438 248 ISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD-LFP 291 (312)
Q Consensus 248 ~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke-l~~ 291 (312)
.-|..|++-+..+ .|+ ..|.++||+.+|||..|+=.+|+. -.+
T Consensus 9 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~ 53 (191)
T 1sgm_A 9 EKILHTASRLSQL-QGYHATGLNQIVKESGAPKGSLYHFFPNGKEE 53 (191)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHH
T ss_pred HHHHHHHHHHHHH-cCccccCHHHHHHHHCCCchhHHHHccccHHH
Confidence 3455555555554 454 589999999999999999988875 443
No 485
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=42.56 E-value=30 Score=26.74 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHH
Q 021438 247 PISVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 247 P~~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
..-|..||+=+..+ .|+ ..|.++||+.+|||..||=.+|+
T Consensus 12 r~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 52 (197)
T 3rd3_A 12 RQHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYFK 52 (197)
T ss_dssp HHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTCS
T ss_pred HHHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHcC
Confidence 34455555555544 465 58999999999999999976663
No 486
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=42.54 E-value=16 Score=26.22 Aligned_cols=27 Identities=7% Similarity=-0.024 Sum_probs=23.2
Q ss_pred CCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+..+||...||+..||.++.+.....
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~~~ 57 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHERD 57 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 468899999999999999998886553
No 487
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=42.47 E-value=26 Score=28.11 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=30.4
Q ss_pred HhcCCCCCHHHHHHHhC---cchhHHHHHHHHHHhhhcc
Q 021438 260 QLSNDTKPLKEISIVTR---VAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 260 ~~~~~~~~~~~Ia~~~~---vs~~ti~~~~kel~~~~~~ 295 (312)
+-.|...+.++||+.++ +|+.|++.+.+.|++.++.
T Consensus 159 ~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 159 ENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp HTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred HCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 33345588999999999 9999999999999998864
No 488
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.43 E-value=10 Score=24.83 Aligned_cols=24 Identities=25% Similarity=0.778 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGL 31 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~ 31 (312)
...|..||+. .. - --.-.|..||+
T Consensus 17 H~lCrRCG~~-sy--H--~qK~~Ca~CGy 40 (62)
T 3j21_e 17 HIRCRRCGRV-SY--N--VKKGYCAACGF 40 (62)
T ss_dssp CCBCSSSCSB-CE--E--TTTTEETTTCT
T ss_pred eeeecccCcc-hh--c--cccccccccCC
Confidence 4678899973 22 2 34568999987
No 489
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=42.32 E-value=16 Score=26.39 Aligned_cols=26 Identities=4% Similarity=0.098 Sum_probs=21.6
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHH
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
....+||.++|+.+|+|..||.+..+
T Consensus 24 ~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 24 FLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp HTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34568899999999999999997653
No 490
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=41.95 E-value=24 Score=28.77 Aligned_cols=30 Identities=30% Similarity=0.246 Sum_probs=27.1
Q ss_pred CCHHHHHHHhCcchhHHHHHHHHHHhhhcc
Q 021438 266 KPLKEISIVTRVAEGTIKNVYKDLFPHLAR 295 (312)
Q Consensus 266 ~~~~~Ia~~~~vs~~ti~~~~kel~~~~~~ 295 (312)
.+-++||+.+++|+.|++...+.|++.++.
T Consensus 165 ~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 165 LTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 678999999999999999999999987653
No 491
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=41.90 E-value=22 Score=27.05 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHhCcchhHHHHHHHHHHhh
Q 021438 262 SNDTKPLKEISIVTRVAEGTIKNVYKDLFPH 292 (312)
Q Consensus 262 ~~~~~~~~~Ia~~~~vs~~ti~~~~kel~~~ 292 (312)
.+...++.+||+.++++..|+....+.|.+.
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~ 89 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 3457899999999999999999999999885
No 492
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=41.88 E-value=18 Score=26.35 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHhCcchhHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNV 285 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~ 285 (312)
..+||+++|+.+|++..||.+.
T Consensus 33 ~gltq~elA~~~gis~~~is~~ 54 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAV 54 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 3578999999999999999865
No 493
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=41.78 E-value=17 Score=25.84 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.4
Q ss_pred CCCHHHHHHHhCcchhHHHHHH
Q 021438 265 TKPLKEISIVTRVAEGTIKNVY 286 (312)
Q Consensus 265 ~~~~~~Ia~~~~vs~~ti~~~~ 286 (312)
.+|++++|+.+|+|..||.+..
T Consensus 31 gltq~~lA~~~gis~~~is~~e 52 (104)
T 3cec_A 31 DINTANFAEILGVSNQTIQEVI 52 (104)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 5789999999999999998754
No 494
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=41.75 E-value=18 Score=25.83 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCcchhHHHHHHHH
Q 021438 264 DTKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 264 ~~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
..+|+.++|+.+|+|..||.+..+-
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4578999999999999999876553
No 495
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=41.75 E-value=17 Score=27.79 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHHH
Q 021438 250 VAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYKD 288 (312)
Q Consensus 250 iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~ke 288 (312)
|..|++=+..+ .|+ ..|.++||+.+|||..|+=.+|+.
T Consensus 17 Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 55 (177)
T 3kkc_A 17 IYNAFISLLQE-NDYSKITVQDVIGLANVGRSTFYSHYES 55 (177)
T ss_dssp HHHHHHHHTTT-SCTTTCCHHHHHHHHCCCHHHHTTTCSS
T ss_pred HHHHHHHHHHh-CChhHhhHHHHHHHhCCcHhhHHHHcCC
Confidence 34444443333 464 689999999999999999877743
No 496
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=41.74 E-value=33 Score=27.14 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHhCcchhHHHHHHH
Q 021438 249 SVAAAVIYIITQLSND-TKPLKEISIVTRVAEGTIKNVYK 287 (312)
Q Consensus 249 ~iaaAaiyla~~~~~~-~~~~~~Ia~~~~vs~~ti~~~~k 287 (312)
-|..||+=+.++ .|+ ..|.++||+.+|||..||=.+|+
T Consensus 12 ~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 12 RIFEAAVAEFAR-HGIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHHHHHHH-HTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 344444444443 465 58899999999999999998885
No 497
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=41.45 E-value=11 Score=24.21 Aligned_cols=24 Identities=25% Similarity=0.861 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcCCCcc
Q 021438 3 DSYCADCKRLTEVVFDHSAGDTICSECGL 31 (312)
Q Consensus 3 ~~~Cp~Cg~~~~ii~D~~~G~~vC~~CG~ 31 (312)
+..|..||+. + +- --.-+|..||+
T Consensus 17 H~~CrRCG~~-s--yH--~qK~~Ca~CGy 40 (57)
T 1vq8_1 17 HTKCRRCGEK-S--YH--TKKKVCSSCGF 40 (57)
T ss_dssp EEECTTTCSE-E--EE--TTTTEETTTCT
T ss_pred cccccccCCh-h--hh--ccccccccccC
Confidence 3468999972 2 22 23678999997
No 498
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=41.44 E-value=5.3 Score=31.01 Aligned_cols=18 Identities=22% Similarity=0.626 Sum_probs=14.8
Q ss_pred eeeCCCCceEcCCCcccc
Q 021438 16 VFDHSAGDTICSECGLVL 33 (312)
Q Consensus 16 i~D~~~G~~vC~~CG~Vv 33 (312)
.+|..+|.++|..||...
T Consensus 102 e~~v~eg~L~C~~cg~~Y 119 (141)
T 2j6a_A 102 QTSIAEGEMKCRNCGHIY 119 (141)
T ss_dssp TEEEEEEEEECTTTCCEE
T ss_pred heeccCCEEECCCCCCcc
Confidence 355678999999999984
No 499
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=41.33 E-value=5.5 Score=34.82 Aligned_cols=25 Identities=20% Similarity=0.798 Sum_probs=19.3
Q ss_pred CCCCCCCCCCceeeeC--CCCceEcCCCcc
Q 021438 4 SYCADCKRLTEVVFDH--SAGDTICSECGL 31 (312)
Q Consensus 4 ~~Cp~Cg~~~~ii~D~--~~G~~vC~~CG~ 31 (312)
.+||+|+. .+++. .....||..|+.
T Consensus 31 ~kc~~~~~---~~y~~~l~~~~~v~p~~~~ 57 (285)
T 2f9i_B 31 TKCPKCKK---IMYTKELAENLNVCFNCDH 57 (285)
T ss_dssp EECTTTCC---EEEHHHHHHTTTBCTTTCC
T ss_pred HhhHhhCC---ccchhhhHHhcCcCCCCCC
Confidence 47999997 34553 556789999999
No 500
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=41.28 E-value=52 Score=26.29 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 021438 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (312)
Q Consensus 165 ~p~tl~dia~~~~~v~~~~i~~~~~~l~~~ 194 (312)
.|.|..+||+.+ |++..++.+.++++.+.
T Consensus 166 ~~~t~~~lA~~l-g~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALML-GTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHh-CCcHHHHHHHHHHHHHC
Confidence 589999999999 89999999999998754
Done!