Query 021439
Match_columns 312
No_of_seqs 194 out of 595
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 3.7E-67 8.1E-72 489.0 15.2 271 1-271 15-316 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 7E-61 1.5E-65 453.6 21.9 269 1-269 1-300 (300)
3 PRK02971 4-amino-4-deoxy-L-ara 98.6 1.5E-07 3.3E-12 79.1 8.3 114 7-121 2-121 (129)
4 COG2510 Predicted membrane pro 98.5 8E-07 1.7E-11 74.2 10.0 113 9-121 5-138 (140)
5 PRK15051 4-amino-4-deoxy-L-ara 98.4 1.3E-06 2.8E-11 71.5 8.9 101 11-120 5-107 (111)
6 PF13536 EmrE: Multidrug resis 98.4 8.3E-07 1.8E-11 72.2 7.2 67 56-123 41-107 (113)
7 PF10639 UPF0546: Uncharacteri 98.3 8.8E-07 1.9E-11 72.8 5.6 102 20-121 9-113 (113)
8 TIGR03340 phn_DUF6 phosphonate 98.3 7.4E-05 1.6E-09 69.8 18.3 114 9-122 3-135 (281)
9 PF06027 DUF914: Eukaryotic pr 98.2 6.8E-05 1.5E-09 72.6 15.9 77 48-124 75-153 (334)
10 TIGR00776 RhaT RhaT L-rhamnose 98.1 5.1E-05 1.1E-09 71.7 13.0 75 50-124 56-138 (290)
11 TIGR00950 2A78 Carboxylate/Ami 98.0 0.00065 1.4E-08 61.9 17.1 69 54-122 51-119 (260)
12 PRK10532 threonine and homoser 97.9 5.3E-05 1.1E-09 71.4 8.2 124 5-128 146-287 (293)
13 PRK11453 O-acetylserine/cystei 97.7 0.0034 7.4E-08 59.2 17.1 112 10-121 7-131 (299)
14 PRK10452 multidrug efflux syst 97.6 0.00056 1.2E-08 56.9 9.4 73 53-125 33-106 (120)
15 PLN00411 nodulin MtN21 family 97.6 0.0003 6.5E-09 68.7 8.8 123 5-127 187-333 (358)
16 TIGR00817 tpt Tpt phosphate/ph 97.5 0.0051 1.1E-07 57.9 16.4 65 55-120 71-135 (302)
17 PLN00411 nodulin MtN21 family 97.5 0.0046 9.9E-08 60.5 16.2 59 64-122 92-156 (358)
18 TIGR00950 2A78 Carboxylate/Ami 97.5 0.00074 1.6E-08 61.6 9.9 114 4-117 125-259 (260)
19 PRK11272 putative DMT superfam 97.5 0.0028 6E-08 59.6 14.0 66 55-121 74-140 (292)
20 PRK09541 emrE multidrug efflux 97.5 0.00082 1.8E-08 55.0 8.9 75 50-124 29-105 (110)
21 PF00892 EamA: EamA-like trans 97.4 9.9E-05 2.1E-09 59.0 2.8 68 53-120 57-124 (126)
22 PF06800 Sugar_transport: Suga 97.3 0.012 2.7E-07 55.3 16.2 80 51-130 43-130 (269)
23 COG0697 RhaT Permeases of the 97.3 0.058 1.3E-06 49.0 20.2 71 57-127 77-148 (292)
24 TIGR03340 phn_DUF6 phosphonate 97.3 0.00067 1.5E-08 63.4 7.3 113 7-119 144-280 (281)
25 PRK15430 putative chlorampheni 97.3 0.00049 1.1E-08 64.9 6.2 119 2-121 3-144 (296)
26 PRK13499 rhamnose-proton sympo 97.2 0.0034 7.3E-08 61.1 11.5 121 1-125 1-156 (345)
27 PRK11689 aromatic amino acid e 97.2 0.0014 3E-08 61.8 8.3 116 5-120 154-285 (295)
28 PRK11272 putative DMT superfam 97.2 0.0017 3.6E-08 61.1 8.8 116 5-120 148-283 (292)
29 PF08449 UAA: UAA transporter 97.1 0.043 9.4E-07 51.9 17.6 73 57-129 71-143 (303)
30 PF04142 Nuc_sug_transp: Nucle 97.1 0.0018 3.9E-08 60.0 7.6 71 57-127 24-94 (244)
31 PRK11453 O-acetylserine/cystei 97.1 0.0035 7.5E-08 59.2 9.6 115 6-120 142-285 (299)
32 PRK11689 aromatic amino acid e 97.1 0.043 9.2E-07 51.7 17.0 115 8-122 5-137 (295)
33 PF00893 Multi_Drug_Res: Small 96.8 0.0066 1.4E-07 47.9 7.8 65 49-113 27-93 (93)
34 PRK10650 multidrug efflux syst 96.7 0.019 4.1E-07 47.0 10.0 97 8-120 8-106 (109)
35 KOG3912 Predicted integral mem 96.6 0.038 8.3E-07 52.4 12.3 76 48-123 84-159 (372)
36 TIGR00688 rarD rarD protein. T 96.5 0.0039 8.5E-08 57.2 5.1 62 60-121 80-141 (256)
37 PRK10532 threonine and homoser 96.5 0.3 6.4E-06 45.9 17.9 112 4-122 9-137 (293)
38 PRK11431 multidrug efflux syst 96.5 0.024 5.2E-07 46.0 8.9 72 49-120 27-100 (105)
39 COG0697 RhaT Permeases of the 96.3 0.016 3.5E-07 52.7 8.1 115 6-121 153-286 (292)
40 PTZ00343 triose or hexose phos 96.0 0.021 4.5E-07 55.5 7.6 59 63-121 127-185 (350)
41 KOG2765 Predicted membrane pro 95.9 0.031 6.7E-07 54.7 7.8 89 54-142 160-256 (416)
42 KOG2234 Predicted UDP-galactos 95.8 0.47 1E-05 46.2 15.7 75 55-129 97-171 (345)
43 COG2076 EmrE Membrane transpor 95.7 0.068 1.5E-06 43.5 8.1 72 49-120 28-101 (106)
44 PRK15430 putative chlorampheni 95.5 0.014 3E-07 55.1 4.1 61 62-122 225-285 (296)
45 KOG4510 Permease of the drug/m 95.1 0.043 9.4E-07 51.7 5.8 115 6-121 37-168 (346)
46 TIGR00776 RhaT RhaT L-rhamnose 94.6 0.058 1.2E-06 51.0 5.2 114 6-121 151-287 (290)
47 PF06027 DUF914: Eukaryotic pr 94.4 0.39 8.4E-06 46.7 10.7 126 3-129 164-312 (334)
48 PF03151 TPT: Triose-phosphate 93.8 0.35 7.5E-06 40.3 8.0 56 64-119 95-150 (153)
49 TIGR00817 tpt Tpt phosphate/ph 93.8 0.083 1.8E-06 49.7 4.5 117 4-120 142-291 (302)
50 COG2962 RarD Predicted permeas 91.8 3.5 7.6E-05 39.3 12.3 76 45-120 63-142 (293)
51 KOG4831 Unnamed protein [Funct 90.2 0.36 7.9E-06 39.4 3.6 78 44-121 46-124 (125)
52 COG5006 rhtA Threonine/homoser 89.9 2.8 6E-05 39.5 9.6 122 4-125 145-285 (292)
53 TIGR00803 nst UDP-galactose tr 89.7 1.3 2.8E-05 39.8 7.3 116 4-119 82-221 (222)
54 COG1742 Uncharacterized conser 85.2 4.5 9.8E-05 32.9 7.0 46 80-126 62-107 (109)
55 PRK02237 hypothetical protein; 82.5 1.5 3.3E-05 35.8 3.3 46 80-126 63-108 (109)
56 PF02694 UPF0060: Uncharacteri 80.7 1.9 4.2E-05 35.1 3.3 45 80-125 61-105 (107)
57 PF06800 Sugar_transport: Suga 78.6 4 8.8E-05 38.6 5.3 61 59-119 204-268 (269)
58 KOG2766 Predicted membrane pro 78.5 0.9 2E-05 42.8 0.9 60 68-127 96-155 (336)
59 KOG1583 UDP-N-acetylglucosamin 76.0 5.5 0.00012 38.0 5.3 79 51-129 65-144 (330)
60 PTZ00343 triose or hexose phos 75.2 5 0.00011 38.9 5.1 51 69-119 295-345 (350)
61 COG3169 Uncharacterized protei 68.6 4.8 0.0001 32.5 2.6 105 2-119 5-112 (116)
62 PF04342 DUF486: Protein of un 68.1 4.5 9.7E-05 33.0 2.4 36 84-119 70-105 (108)
63 PF08449 UAA: UAA transporter 64.1 32 0.00069 32.4 7.9 114 6-119 153-294 (303)
64 PF06379 RhaT: L-rhamnose-prot 63.7 1.5E+02 0.0033 29.0 13.2 254 1-260 1-339 (344)
65 PF04142 Nuc_sug_transp: Nucle 61.0 56 0.0012 30.1 8.7 109 4-112 111-243 (244)
66 KOG4314 Predicted carbohydrate 60.7 16 0.00034 33.4 4.8 60 64-123 67-126 (290)
67 COG2510 Predicted membrane pro 59.8 60 0.0013 27.6 7.7 24 235-262 117-140 (140)
68 PRK13499 rhamnose-proton sympo 58.0 22 0.00047 34.9 5.6 38 84-122 298-341 (345)
69 KOG1441 Glucose-6-phosphate/ph 52.6 5.2 0.00011 38.7 0.4 63 60-122 93-155 (316)
70 PF05653 Mg_trans_NIPA: Magnes 50.2 63 0.0014 30.9 7.3 79 47-125 206-295 (300)
71 PF01306 LacY_symp: LacY proto 47.2 1.1E+02 0.0023 30.8 8.7 72 83-154 147-231 (412)
72 KOG1442 GDP-fucose transporter 46.5 5.4 0.00012 38.1 -0.6 59 60-118 112-170 (347)
73 COG4975 GlcU Putative glucose 46.0 1.2E+02 0.0026 28.7 8.1 195 47-263 53-287 (288)
74 PLN02810 carbon-monoxide oxyge 40.0 2.8E+02 0.006 25.8 9.5 35 233-267 186-220 (231)
75 COG4858 Uncharacterized membra 38.5 3.1E+02 0.0066 24.9 9.3 91 5-106 123-220 (226)
76 PLN02680 carbon-monoxide oxyge 38.2 2E+02 0.0044 26.6 8.4 28 233-260 187-214 (232)
77 PF06570 DUF1129: Protein of u 37.6 2.6E+02 0.0057 24.9 9.0 87 8-105 112-204 (206)
78 PF15048 OSTbeta: Organic solu 35.2 15 0.00033 30.7 0.5 34 234-267 29-62 (125)
79 KOG1581 UDP-galactose transpor 35.2 3.1E+02 0.0067 26.7 9.2 68 60-127 93-160 (327)
80 cd08764 Cyt_b561_CG1275_like N 34.5 3.5E+02 0.0077 24.7 9.3 31 233-263 165-195 (214)
81 TIGR02847 CyoD cytochrome o ub 33.8 1.6E+02 0.0034 23.5 6.1 45 209-253 32-78 (96)
82 PF05297 Herpes_LMP1: Herpesvi 32.1 15 0.00033 35.2 0.0 11 238-248 135-145 (381)
83 TIGR02901 QoxD cytochrome aa3 31.5 1.6E+02 0.0036 23.3 5.8 47 207-253 32-80 (94)
84 PF04531 Phage_holin_1: Bacter 30.7 2.5E+02 0.0055 21.6 7.5 22 47-68 7-28 (84)
85 PRK10582 cytochrome o ubiquino 30.1 1.8E+02 0.004 23.7 6.0 38 215-252 50-88 (109)
86 PF04657 DUF606: Protein of un 29.7 1.1E+02 0.0024 25.6 4.9 33 87-119 102-138 (138)
87 PRK02983 lysS lysyl-tRNA synth 28.9 8.5E+02 0.018 27.8 12.8 25 49-73 74-98 (1094)
88 PF06966 DUF1295: Protein of u 28.6 2E+02 0.0044 26.2 6.8 59 5-64 121-186 (235)
89 COG1008 NuoM NADH:ubiquinone o 27.9 2.4E+02 0.0053 29.1 7.7 80 14-101 339-430 (497)
90 PF04211 MtrC: Tetrahydrometha 27.8 2.5E+02 0.0054 26.5 7.1 133 55-187 75-217 (262)
91 PF05106 Phage_holin_3: Phage 26.9 1.3E+02 0.0027 24.1 4.5 54 130-184 5-58 (100)
92 PF11712 Vma12: Endoplasmic re 22.9 2.3E+02 0.005 23.8 5.6 63 130-193 65-129 (142)
93 PF06157 DUF973: Protein of un 21.2 7.2E+02 0.016 23.7 10.0 60 6-68 46-105 (285)
94 KOG0475 Cl- channel CLC-3 and 21.2 6.8E+02 0.015 26.9 9.5 66 92-158 214-280 (696)
95 PLN02351 cytochromes b561 fami 20.7 2.2E+02 0.0048 26.6 5.4 26 233-258 190-215 (242)
96 PRK01030 tetrahydromethanopter 20.3 4E+02 0.0087 25.2 7.0 133 55-187 68-210 (264)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.7e-67 Score=489.03 Aligned_cols=271 Identities=65% Similarity=1.105 Sum_probs=264.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcccchhc
Q 021439 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT 80 (312)
Q Consensus 1 ~~~~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~fap~slV~ 80 (312)
|++|+++|+.+|+.||++++.++++|||+++|..+.+.|+++++++|+++|+||+|+++|++||++||+||+|||++||+
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVt 94 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVT 94 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhc
Confidence 78999999999999999999999999999999998788999899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 021439 81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI 160 (312)
Q Consensus 81 PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li 160 (312)
||||+|+++|+++|+++|||+++..+.+||++|++|++++|+|+|+|++..|++|+|+++++|+|++|+.+.++++++++
T Consensus 95 PLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~ 174 (335)
T KOG2922|consen 95 PLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLILI 174 (335)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred hhhcccCCCcchhhhhhhHhhhhhhHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHh---------
Q 021439 161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN--------- 231 (312)
Q Consensus 161 ~~~~~r~g~~~~l~y~~i~g~lg~~tvl~~K~~~~~l~~~~~G~~~~~~~~~y~li~~~v~~~~~Q~~~LN--------- 231 (312)
++..||+|++|+++|+.+|+++|++||+++|+++.+++++++|++|+.+|+||+++++++.|+.+|++|||
T Consensus 175 ~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fnts 254 (335)
T KOG2922|consen 175 FFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTS 254 (335)
T ss_pred eeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------h-cccCCCHHHHHHHHHHHHHHhhheeeecccCCCCCCccc
Q 021439 232 ---------------------M-DYSGQSASSIASELCGFITVLSGTSVLHSTREPDTPLIT 271 (312)
Q Consensus 232 ---------------------f-e~~~~~~~~i~~~~~G~~~i~~GV~lLs~~~~~~~~~~~ 271 (312)
| ||++++..|+.+++||+++++.|+|+|+++||++++++.
T Consensus 255 lV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~~~s 316 (335)
T KOG2922|consen 255 IVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEISLAS 316 (335)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccccccc
Confidence 3 999999999999999999999999999999999985544
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=7e-61 Score=453.57 Aligned_cols=269 Identities=46% Similarity=0.795 Sum_probs=257.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcccchhc
Q 021439 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT 80 (312)
Q Consensus 1 ~~~~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~fap~slV~ 80 (312)
|-+|+++|+.+|++||+++++|+++|||+++|+++++.|++.++++|+|||+||+|+++|++|+++|++||+|||+++||
T Consensus 1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~ 80 (300)
T PF05653_consen 1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVA 80 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHH
Confidence 67899999999999999999999999999999987666665567899999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 021439 81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI 160 (312)
Q Consensus 81 PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li 160 (312)
|+|++++++|+++|++++|||++++|++|+++|++|++++++++|++++.+|++|+++++++|+|+.|+.+..++.++++
T Consensus 81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~ 160 (300)
T PF05653_consen 81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILI 160 (300)
T ss_pred HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777787
Q ss_pred hhhcccCCCcchhhhhhhHhhhhhhHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHh---------
Q 021439 161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLN--------- 231 (312)
Q Consensus 161 ~~~~~r~g~~~~l~y~~i~g~lg~~tvl~~K~~~~~l~~~~~G~~~~~~~~~y~li~~~v~~~~~Q~~~LN--------- 231 (312)
++..||+|++++++|.++||++|++|++++|++++.++++++|+|||.+|.+|++++++++|++.|++|||
T Consensus 161 ~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~ 240 (300)
T PF05653_consen 161 FFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTS 240 (300)
T ss_pred HhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------h-cccCCCHHHHHHHHHHHHHHhhheeeecccCCCCCCc
Q 021439 232 ---------------------M-DYSGQSASSIASELCGFITVLSGTSVLHSTREPDTPL 269 (312)
Q Consensus 232 ---------------------f-e~~~~~~~~i~~~~~G~~~i~~GV~lLs~~~~~~~~~ 269 (312)
| ||+++++++++++.+|+++++.||++|+.+||+++.|
T Consensus 241 ~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~~~ 300 (300)
T PF05653_consen 241 LVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEISQ 300 (300)
T ss_pred EEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhccC
Confidence 2 9999999999999999999999999999999998754
No 3
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.62 E-value=1.5e-07 Score=79.08 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCC--Ccccccch--hHHHHHHHHHHHHHHHHHHHhhcccchhccc
Q 021439 7 IGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSG--GYGYLLEP--LWWVGMFTMIVGEIANFVAYIYAPAVLVTPL 82 (312)
Q Consensus 7 iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~--~~~~l~~p--~W~~G~~l~~~g~~~~~~Al~fap~slV~PL 82 (312)
+|.++.+.+.++.+.|.++-|++..+.++.+.... . ......+| .-+.|+.+++++......++...|++...|+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~ 80 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-FIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPL 80 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 46788889999999999999999887653211100 0 01223456 6788999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH--HhccccccchhhhHHHHhhhheeEE
Q 021439 83 GALSIIVSAVLAHF--MLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 83 gal~lv~~~~la~~--~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
-+...++..+.+.. ++||+++..+++|++++++|+.++.
T Consensus 81 ~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 81 LSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99998888888885 7999999999999999999998864
No 4
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.53 E-value=8e-07 Score=74.22 Aligned_cols=113 Identities=25% Similarity=0.370 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhcC---CCCC--------------CC-CCcccccchhHHHHH---HHHHHHHHHH
Q 021439 9 FILAVVSSAFIGSSFIIKKKGLRKAGAN---GARA--------------GS-GGYGYLLEPLWWVGM---FTMIVGEIAN 67 (312)
Q Consensus 9 v~LAl~ss~~ia~G~vlqk~~~~~~~~~---~~~~--------------~~-~~~~~l~~p~W~~G~---~l~~~g~~~~ 67 (312)
...|+.|++|-++..++-|-+....+.. ..|+ |. +...-...+.|.-=. +.-.++-.+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Y 84 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHH
Confidence 4678889999999999999887643221 0000 00 000111223332211 2234566789
Q ss_pred HHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEE
Q 021439 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 68 ~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
|.|+.-++++.|+|+-..|+++..+++..+||||++...|+|+.++++|++++.
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999998864
No 5
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.43 E-value=1.3e-06 Score=71.46 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHH--HHHHHHHHHHHHHHhhcccchhccchhHHHH
Q 021439 11 LAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGM--FTMIVGEIANFVAYIYAPAVLVTPLGALSII 88 (312)
Q Consensus 11 LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~--~l~~~g~~~~~~Al~fap~slV~PLgal~lv 88 (312)
+-+.+.++...|.+..|++.++.+. + + ...++.+|.+. ..+.++..+...++...|++...|+.+++.+
T Consensus 5 ~l~~ai~~ev~g~~~lK~s~~~~~~-------~-~-~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v 75 (111)
T PRK15051 5 TLVFASLLSVAGQLCQKQATRPVAI-------G-K-RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFV 75 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCc-------c-h-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 3455667778888888887433211 0 1 11134455555 5577888899999999999999999999999
Q ss_pred HHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 89 VSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 89 ~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
++.+++.+++|||++.++++|+++++.|++++
T Consensus 76 ~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 76 WVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
No 6
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.41 E-value=8.3e-07 Score=72.21 Aligned_cols=67 Identities=31% Similarity=0.474 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEee
Q 021439 56 GMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (312)
Q Consensus 56 G~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~ 123 (312)
|++....+..+.+.|+.++| ..++|+.+++.+++.+++..++|||++++.+.|++++.+|++++...
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 33444577889999999999 59999999999999999999999999999999999999999887553
No 7
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.33 E-value=8.8e-07 Score=72.77 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=80.8
Q ss_pred HHHHHHHHhHHhhhhcCCCC--CCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcccchhccch-hHHHHHHHHHHHH
Q 021439 20 GSSFIIKKKGLRKAGANGAR--AGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHF 96 (312)
Q Consensus 20 a~G~vlqk~~~~~~~~~~~~--~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~fap~slV~PLg-al~lv~~~~la~~ 96 (312)
+...-+.||+....++.... .-.+.+..++||..++++++...|.+..+..++-+|.|+..|+. +++.+++++.+.+
T Consensus 9 G~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~ 88 (113)
T PF10639_consen 9 GCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWL 88 (113)
T ss_pred cCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHH
Confidence 44455677776544432111 11223467899999999999999999999999999999999996 9999999999977
Q ss_pred HhccccccchhhhHHHHhhhheeEE
Q 021439 97 MLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 97 ~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
+-+|..+++.++|+.+++.|+.+.+
T Consensus 89 lge~~~~~~~~~G~~Li~~Gv~Lcv 113 (113)
T PF10639_consen 89 LGEEVISRRTWLGMALILAGVALCV 113 (113)
T ss_pred hcCcccchhHHHHHHHHHcCeeeeC
Confidence 7677778888999999999988753
No 8
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.29 E-value=7.4e-05 Score=69.82 Aligned_cols=114 Identities=24% Similarity=0.261 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhcC-------------C---CCCCCCCcccccchhHHH---HHHHHHHHHHHHHH
Q 021439 9 FILAVVSSAFIGSSFIIKKKGLRKAGAN-------------G---ARAGSGGYGYLLEPLWWV---GMFTMIVGEIANFV 69 (312)
Q Consensus 9 v~LAl~ss~~ia~G~vlqk~~~~~~~~~-------------~---~~~~~~~~~~l~~p~W~~---G~~l~~~g~~~~~~ 69 (312)
..+.+.++++.+...++.||...+++.- . .+......+..++..|+. +......+..+.+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ 82 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999754442210 0 000000111112222211 22234455667788
Q ss_pred HHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEe
Q 021439 70 AYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (312)
Q Consensus 70 Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~ 122 (312)
++.++|.+..+|+...+.++.++++..++|||+++++|.|+++++.|+.++..
T Consensus 83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999887653
No 9
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.18 E-value=6.8e-05 Score=72.57 Aligned_cols=77 Identities=23% Similarity=0.444 Sum_probs=65.3
Q ss_pred ccchhHHHHHH--HHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeec
Q 021439 48 LLEPLWWVGMF--TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (312)
Q Consensus 48 l~~p~W~~G~~--l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~ 124 (312)
+++|.|.-=++ +.+.|+-....||.+.+.+-+|=|...+.+++++++.++||||+++.+++|+++|++|.++++...
T Consensus 75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 44555543333 346778888899999999999999999999999999999999999999999999999988876653
No 10
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.10 E-value=5.1e-05 Score=71.72 Aligned_cols=75 Identities=15% Similarity=0.365 Sum_probs=68.2
Q ss_pred chhHHHHHHH---HHHHHHHHHHHHhhcccchhccchh-HHHHHHHHHHHHHhccccccch----hhhHHHHhhhheeEE
Q 021439 50 EPLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLGA-LSIIVSAVLAHFMLNEKLQKMG----MLGCLLCVVGSTMIV 121 (312)
Q Consensus 50 ~p~W~~G~~l---~~~g~~~~~~Al~fap~slV~PLga-l~lv~~~~la~~~l~e~l~~~~----~~G~~l~~~G~~lvv 121 (312)
...|..|++. +..|+++.+.|.....+++-.|+.. +.++++.+++.+++||+.++++ ..|++++++|++++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 4666778887 8899999999999999999999999 9999999999999999999999 999999999988876
Q ss_pred eec
Q 021439 122 LHA 124 (312)
Q Consensus 122 ~~~ 124 (312)
...
T Consensus 136 ~~~ 138 (290)
T TIGR00776 136 RSK 138 (290)
T ss_pred ecc
Confidence 654
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.96 E-value=0.00065 Score=61.95 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEe
Q 021439 54 WVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (312)
Q Consensus 54 ~~G~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~ 122 (312)
..|.+.+.++..+.+.|+.+.|.+..+++..+..+++++++..++|||++++++.|+.++++|+.++..
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 344455667788899999999999999999999999999999999999999999999999999888753
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.85 E-value=5.3e-05 Score=71.37 Aligned_cols=124 Identities=17% Similarity=0.100 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCC--------------CCCCCCcccccch----hHHHHHHHHHHHHHH
Q 021439 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGA--------------RAGSGGYGYLLEP----LWWVGMFTMIVGEIA 66 (312)
Q Consensus 5 ~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~--------------~~~~~~~~~l~~p----~W~~G~~l~~~g~~~ 66 (312)
..+|.++++.++++.+...++.||...+.+.... -...+........ .++.|+...+++..+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999988875433221000 0000000111111 246666667788889
Q ss_pred HHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCcc
Q 021439 67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEE 128 (312)
Q Consensus 67 ~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~~ 128 (312)
+..++...|++.++++..+..+++.+++.+++||+++..+++|.++++.|+.......++|+
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~ 287 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP 287 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999877655444443
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.65 E-value=0.0034 Score=59.22 Aligned_cols=112 Identities=23% Similarity=0.301 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhcC---CCCCCC-C--Ccccc---cch---hHHHHHHHHHHHHHHHHHHHhh-ccc
Q 021439 10 ILAVVSSAFIGSSFIIKKKGLRKAGAN---GARAGS-G--GYGYL---LEP---LWWVGMFTMIVGEIANFVAYIY-APA 76 (312)
Q Consensus 10 ~LAl~ss~~ia~G~vlqk~~~~~~~~~---~~~~~~-~--~~~~l---~~p---~W~~G~~l~~~g~~~~~~Al~f-ap~ 76 (312)
.+++..+++-+......|....+.+.. ..|..- . ..... |++ .-..|+........+.+.++.+ .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 446777788888888888765432210 011100 0 00011 111 1111222222233455666666 477
Q ss_pred chhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEE
Q 021439 77 VLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 77 slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
...+-+.....++..+++++++|||+++++++|+++.++|+.++.
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 777778888889999999999999999999999999999988765
No 14
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.59 E-value=0.00056 Score=56.87 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhccc-hhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecC
Q 021439 53 WWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (312)
Q Consensus 53 W~~G~~l~~~g~~~~~~Al~fap~slV~PL-gal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p 125 (312)
|+..++++.++..+-..|+...|.++.-|+ .+++.+...+.+.++.||+++..+++|+.++++|++.+=..++
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 455566777888888889999999999999 5799999999999999999999999999999999987755444
No 15
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.57 E-value=0.0003 Score=68.73 Aligned_cols=123 Identities=19% Similarity=0.227 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCC-------------------CCCCCCCcccccc-hhHHHHHHHH----
Q 021439 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-------------------ARAGSGGYGYLLE-PLWWVGMFTM---- 60 (312)
Q Consensus 5 ~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~-------------------~~~~~~~~~~l~~-p~W~~G~~l~---- 60 (312)
..+|.++++.|+++.+++.++|||-..+-+... ...+.+....... ..|+..++..
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t 266 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence 467999999999999999999998655432100 0000000000100 1111222212
Q ss_pred HHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCc
Q 021439 61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (312)
Q Consensus 61 ~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~ 127 (312)
.+++.++.-+....+++.++...-+..+++++++..+++|+++...++|+++++.|+.++.....+|
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2245566778889999999999999999999999999999999999999999999988765444444
No 16
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.53 E-value=0.0051 Score=57.94 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 55 VGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 55 ~G~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
.|+. +.+...++..++.+.+++..+=+-+.+.+++++++++++|||++++.+.|.+++++|+.+.
T Consensus 71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 4444 4666788999999999999999999999999999999999999999999999999999754
No 17
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.51 E-value=0.0046 Score=60.48 Aligned_cols=59 Identities=15% Similarity=0.450 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcccchhccchhHHHHHHHHHHHHH------hccccccchhhhHHHHhhhheeEEe
Q 021439 64 EIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFM------LNEKLQKMGMLGCLLCVVGSTMIVL 122 (312)
Q Consensus 64 ~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~------l~e~l~~~~~~G~~l~~~G~~lvv~ 122 (312)
..+.+.++.+.|++..+=+.....++.+++++++ +|||++++.++|++++++|+.++..
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999 6999999999999999999876544
No 18
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.49 E-value=0.00074 Score=61.58 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCC---CC--------------CCCCCcccccchhHH----HHHHHHHH
Q 021439 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---AR--------------AGSGGYGYLLEPLWW----VGMFTMIV 62 (312)
Q Consensus 4 ~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~---~~--------------~~~~~~~~l~~p~W~----~G~~l~~~ 62 (312)
+...|..+++.++++.+...++.||...+.+... .+ ...+.......+.|+ .|....++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999654322100 00 000001111222332 33334467
Q ss_pred HHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhh
Q 021439 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGS 117 (312)
Q Consensus 63 g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~ 117 (312)
+..+.+.++...|+..++.+..+..++..+++.+++||+++..++.|+.+++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 7888999999999999999999999999999999999999999999999999886
No 19
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.49 E-value=0.0028 Score=59.62 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHH-hhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEE
Q 021439 55 VGMFTMIVGEIANFVAY-IYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 55 ~G~~l~~~g~~~~~~Al-~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
.|.+....+..+.+.+. ...|....+-+-.+..++..+++++ +|||++++++.|.++.++|+.++.
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 34444445556667777 8888888888999999999999975 699999999999999999987653
No 20
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.48 E-value=0.00082 Score=55.03 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=63.2
Q ss_pred chhHHHH-HHHHHHHHHHHHHHHhhcccchhccc-hhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeec
Q 021439 50 EPLWWVG-MFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (312)
Q Consensus 50 ~p~W~~G-~~l~~~g~~~~~~Al~fap~slV~PL-gal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~ 124 (312)
++.|.+. ++.++++..+-..|+...|.++.-|+ .+++.+.+.+.+.++.||+++..+++|..++++|++++-..+
T Consensus 29 ~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 29 RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4555444 44567777777788999999999999 779999999999999999999999999999999998874443
No 21
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.42 E-value=9.9e-05 Score=58.97 Aligned_cols=68 Identities=25% Similarity=0.454 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 53 WWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 53 W~~G~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
...|.+...++..+...++...|.+.++++..+..+++.+++..++||+++++++.|+.+++.|+.++
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 33444445678889999999999999999999999999999999999999999999999999998764
No 22
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.34 E-value=0.012 Score=55.33 Aligned_cols=80 Identities=13% Similarity=0.292 Sum_probs=67.6
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhcccchhccch-hHHHHHHHHHHHHHhccccccchh----hhHHHHhhhheeEEe
Q 021439 51 PLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIVL 122 (312)
Q Consensus 51 p~W~~G~~l---~~~g~~~~~~Al~fap~slV~PLg-al~lv~~~~la~~~l~e~l~~~~~----~G~~l~~~G~~lvv~ 122 (312)
..|+.+++. -.+|+++|+.++.....|.-.|++ +..++.|.+.+.++++|-=+..++ .+.+++++|+.+-..
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 678888874 468999999999999999999998 899999999999999998776664 688999999988766
Q ss_pred ecCCccCc
Q 021439 123 HAPLEESL 130 (312)
Q Consensus 123 ~~p~~~~~ 130 (312)
...++++.
T Consensus 123 ~~~~~~~~ 130 (269)
T PF06800_consen 123 QDKKSDKS 130 (269)
T ss_pred cccccccc
Confidence 65555543
No 23
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.32 E-value=0.058 Score=49.05 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHH-HHhccccccchhhhHHHHhhhheeEEeecCCc
Q 021439 57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAH-FMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (312)
Q Consensus 57 ~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~-~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~ 127 (312)
...+..+..+.+.++...|....+++...+.++..+++. +++|||++++++.|..+...|+.++...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 334556678899999999999999999999999999997 77799999999999999999998876544433
No 24
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.30 E-value=0.00067 Score=63.38 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCC----C-----C-----------CCCcccccchhHH----HHHHHHHH
Q 021439 7 IGFILAVVSSAFIGSSFIIKKKGLRKAGANGAR----A-----G-----------SGGYGYLLEPLWW----VGMFTMIV 62 (312)
Q Consensus 7 iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~----~-----~-----------~~~~~~l~~p~W~----~G~~l~~~ 62 (312)
-|..+++.++++.+.+.++.|+...+.+..... . . .+.......+.|| .+.....+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 467788999999999988888753222110000 0 0 0000000111222 22333456
Q ss_pred HHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 021439 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (312)
Q Consensus 63 g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~l 119 (312)
++.+.+.++...|++.++++.-++.+++.+++.+++||+++..+++|.+++++|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 777888999999999999999999999999999999999999999999999999764
No 25
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.28 E-value=0.00049 Score=64.92 Aligned_cols=119 Identities=16% Similarity=0.064 Sum_probs=87.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC---CCCC--------------CC--CCcccccchhHH----HHHH
Q 021439 2 FSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN---GARA--------------GS--GGYGYLLEPLWW----VGMF 58 (312)
Q Consensus 2 ~~~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~---~~~~--------------~~--~~~~~l~~p~W~----~G~~ 58 (312)
|++...|..+++.++++.+...+.-|.. .+.+.. ..|. +. ..++..+++.++ .|..
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 5677889999999999988888877753 211100 0000 00 000011223332 4455
Q ss_pred HHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEE
Q 021439 59 TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 59 l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
.+.++..+.+.++.+.|.+..+-+.....++..++++.++|||+++++|.|+++..+|+++++
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999999999999999999999999999999999999988764
No 26
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.23 E-value=0.0034 Score=61.12 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=90.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhHHhhhh--------------------c-CCCCCCCCCccccc---chhHHHH
Q 021439 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAG--------------------A-NGARAGSGGYGYLL---EPLWWVG 56 (312)
Q Consensus 1 ~~~~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~--------------------~-~~~~~~~~~~~~l~---~p~W~~G 56 (312)
|+.+..+|++..+++.++.+.=.+-|||. +.=+ . -..+ +..++++ ...|..+
T Consensus 1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~---~f~~~~~~~~~~~~~~~ 76 (345)
T PRK13499 1 MSNAIILGIIWHLIGGASSGSFYAPFKKV-KKWSWETMWSVGGIFSWLILPWLIAALLLP---DFWAYYSSFSGSTLLPV 76 (345)
T ss_pred CCchhHHHHHHHHHHHHHhhccccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHhcCHHHHHHH
Confidence 67889999999999999999999999882 2111 0 0011 1122333 3567777
Q ss_pred HHH---HHHHHHHHHHHHhhcccchhccch-hHHHHHHHHHHHHHhcccc---cc----chhhhHHHHhhhheeEEeecC
Q 021439 57 MFT---MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKL---QK----MGMLGCLLCVVGSTMIVLHAP 125 (312)
Q Consensus 57 ~~l---~~~g~~~~~~Al~fap~slV~PLg-al~lv~~~~la~~~l~e~l---~~----~~~~G~~l~~~G~~lvv~~~p 125 (312)
++. -.+|++.++.+..+...++-.|++ +++++.+.++...+.+|=- +. ...+|++++++|+++....+.
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 753 468899999999999999999996 6889999999999988532 32 346999999999988766444
No 27
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.20 E-value=0.0014 Score=61.84 Aligned_cols=116 Identities=17% Similarity=0.116 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCC------------CCCCCcccccchhHHHHHH----HHHHHHHHHH
Q 021439 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGAR------------AGSGGYGYLLEPLWWVGMF----TMIVGEIANF 68 (312)
Q Consensus 5 ~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~------------~~~~~~~~l~~p~W~~G~~----l~~~g~~~~~ 68 (312)
...|..+++.++++.+.+.++.||-..+.+..... .-.+....--++..|..++ ..++++.+..
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~ 233 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWN 233 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999853322110000 0000000111122222222 2345677888
Q ss_pred HHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 69 VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 69 ~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
.++...|++.++++..+..+++.+++..++||+++...++|+++++.|+.+.
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999997665
No 28
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.19 E-value=0.0017 Score=61.14 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC----------------CCCCCCCCcccccchhHH----HHHHHHHHHH
Q 021439 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN----------------GARAGSGGYGYLLEPLWW----VGMFTMIVGE 64 (312)
Q Consensus 5 ~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~----------------~~~~~~~~~~~l~~p~W~----~G~~l~~~g~ 64 (312)
...|..+++.++++.|.+.+.+||..++.+.. ..-.+...........|+ .|+...+++.
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999998853221100 000000000001112333 2333445667
Q ss_pred HHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 65 IANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 65 ~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
.+...++...|.+.+..+..+..+++++++.+++||+++..+++|+++++.|+.+.
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~ 283 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV 283 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999998765
No 29
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.11 E-value=0.043 Score=51.90 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCccC
Q 021439 57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (312)
Q Consensus 57 ~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~~~ 129 (312)
-.++.++..++-.|+.+.|...-+=+-+..++++++++..++|+|.+++++++++++++|+.+..+...++++
T Consensus 71 ~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 71 SFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 3556677788889999999999999999999999999999999999999999999999999988777654443
No 30
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.07 E-value=0.0018 Score=60.02 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCc
Q 021439 57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (312)
Q Consensus 57 ~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~ 127 (312)
-+++.+.+.+.++++...+.+.-|=+.-.-++++++++.++||+|+++++|++..+.++|++++-.....+
T Consensus 24 A~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 24 ALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 35789999999999999999999999999999999999999999999999999999999999876655443
No 31
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.07 E-value=0.0035 Score=59.16 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCC-------------------CCCCcc-----cccchhHHHH-----
Q 021439 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA-------------------GSGGYG-----YLLEPLWWVG----- 56 (312)
Q Consensus 6 ~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~-------------------~~~~~~-----~l~~p~W~~G----- 56 (312)
..|..+++.++++.+...+++||-.++.+...... .++... .-.++.+|..
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 47999999999999999999998533221100000 000000 0012222332
Q ss_pred HHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 57 ~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
++..++++.+.+.++.-.+..-++++..+..+++.+++.++++|+++..+++|.+++++|+.+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 3334556667777777788999999999999999999999999999999999999999998754
No 32
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.06 E-value=0.043 Score=51.70 Aligned_cols=115 Identities=15% Similarity=0.140 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhcC---CCCCCC--------CCcccccc---hhHHHHHHHHHHHHHHHHHHHhh
Q 021439 8 GFILAVVSSAFIGSSFIIKKKGLRKAGAN---GARAGS--------GGYGYLLE---PLWWVGMFTMIVGEIANFVAYIY 73 (312)
Q Consensus 8 Gv~LAl~ss~~ia~G~vlqk~~~~~~~~~---~~~~~~--------~~~~~l~~---p~W~~G~~l~~~g~~~~~~Al~f 73 (312)
+..+++.+.++-+..+...|.+....+.- ..|..- ..++..|+ +....|.+.+.....+.+.++.+
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY 84 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34556667777777777777654432210 001000 00011111 11222333333444455556654
Q ss_pred c----ccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEe
Q 021439 74 A----PAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (312)
Q Consensus 74 a----p~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~ 122 (312)
+ |....+-+..+..++..++++.++|||++++++.|+++..+|++++..
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 3 555556677888999999999999999999999999999999988764
No 33
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.83 E-value=0.0066 Score=47.93 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=36.7
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHhhcccchhccc-hhHHHHHHHHHHHHHhccccccchhhhHHHH
Q 021439 49 LEPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLC 113 (312)
Q Consensus 49 ~~p~W~~G~~-l~~~g~~~~~~Al~fap~slV~PL-gal~lv~~~~la~~~l~e~l~~~~~~G~~l~ 113 (312)
+++.|..+.+ .+.++..+-..|+...|.++.-|+ .+++.+...+.+.++.||+++..++.|+.++
T Consensus 27 ~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 27 TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp -------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3455555555 577788888889999999999997 4699999999999999999999999999875
No 34
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.73 E-value=0.019 Score=47.00 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHHHH-HHHHHHHHHHHHhhcccchhccch-hH
Q 021439 8 GFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFT-MIVGEIANFVAYIYAPAVLVTPLG-AL 85 (312)
Q Consensus 8 Gv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l-~~~g~~~~~~Al~fap~slV~PLg-al 85 (312)
....=+.+.++--.|....|++ + -+++|.|...++. +.++..+--.|+...|..+.-|+= ++
T Consensus 8 ~~~~L~~Ai~~Ev~~t~~Lk~s----~------------gf~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~Gi 71 (109)
T PRK10650 8 HAAWLALAIVLEIVANIFLKFS----D------------GFRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGF 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----c------------CCcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Confidence 3333344555556666666654 1 1345666655543 455555666677788888887764 58
Q ss_pred HHHHHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 86 SIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 86 ~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
+.+...+.+.++.||+++..++.|..+++.|++.+
T Consensus 72 G~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 72 GIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999998764
No 35
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=96.61 E-value=0.038 Score=52.38 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=65.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEee
Q 021439 48 LLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (312)
Q Consensus 48 l~~p~W~~G~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~ 123 (312)
++-.....=.++.+.|..+..+++-+..++--|-+=..-++|..+|+..+||++++.+.|+|+..+++|.+.+...
T Consensus 84 f~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 84 FNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred CCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 3334444456788899999999999999999999999999999999999999999999999999999998776554
No 36
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.49 E-value=0.0039 Score=57.22 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEE
Q 021439 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 60 ~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
+..+..+.+.|+...|..-.+-+...+.++.++++++++|||+++++|.|+++..+|+++++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999987654
No 37
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.48 E-value=0.3 Score=45.93 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC---CCCCC----------CCCcccccchhH----HHHHHHHHHHHHH
Q 021439 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN---GARAG----------SGGYGYLLEPLW----WVGMFTMIVGEIA 66 (312)
Q Consensus 4 ~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~---~~~~~----------~~~~~~l~~p~W----~~G~~l~~~g~~~ 66 (312)
|...|+.+.+.+.++.+.+.++-|.+....+.. ..|.. ...+...+++.| +.|.. +.....+
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 87 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL 87 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence 456788999999999999999999865442210 00100 000011122223 55543 4556677
Q ss_pred HHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEe
Q 021439 67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (312)
Q Consensus 67 ~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~ 122 (312)
.+.++.+.|.....-+...+.++.+++++ |+. .++.+..++++|+.+++.
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~--~~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFSS----RRP--VDFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHhc----CCh--HHHHHHHHHHHHHheeee
Confidence 88889999999877666677777776653 443 346677888899877654
No 38
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.46 E-value=0.024 Score=46.04 Aligned_cols=72 Identities=17% Similarity=0.049 Sum_probs=57.4
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHhhcccchhccch-hHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 49 LEPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 49 ~~p~W~~G~~-l~~~g~~~~~~Al~fap~slV~PLg-al~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
+++.|+..++ .+.++..+--.|+...|..+.-++= +++.+.+.+.+.++.||+++..+++|+.+++.|++.+
T Consensus 27 ~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 27 SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 3566655544 3556666666677788888887764 4899999999999999999999999999999998765
No 39
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.32 E-value=0.016 Score=52.70 Aligned_cols=115 Identities=23% Similarity=0.229 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCC-CC--------------CCCCC-ccc-ccchhHHHH--HHHHHHHHHH
Q 021439 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-AR--------------AGSGG-YGY-LLEPLWWVG--MFTMIVGEIA 66 (312)
Q Consensus 6 ~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~-~~--------------~~~~~-~~~-l~~p~W~~G--~~l~~~g~~~ 66 (312)
..|..+++.++++.+...+.+|+-. +.+... .. ...+. .+. .+...+... +...+++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998754 211100 00 00000 011 111222222 2222345677
Q ss_pred HHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEE
Q 021439 67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 67 ~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
.+-++...|...++|+..+..+++.+++..+++|+++..+++|+++++.|..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999999999999999987653
No 40
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.02 E-value=0.021 Score=55.45 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEE
Q 021439 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 63 g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
+..++..++.+.+++..+=+-+++.+++++++++++|||++++.+.+++++++|+.+.+
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 34556699999999999999999999999999999999999999999999999998865
No 41
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.87 E-value=0.031 Score=54.73 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHH---HHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCccCc
Q 021439 54 WVGMFTMIVGEIAN---FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESL 130 (312)
Q Consensus 54 ~~G~~l~~~g~~~~---~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~~~~ 130 (312)
..++....+-.+.| =+||+|-.+.-.+=+.+.|=+|+..+|..+.+||+|....+++++++.|++++.....++.++
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~ 239 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSD 239 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccccc
Confidence 34444433333333 368999999999999999999999999999999999999999999999999998876655433
Q ss_pred C-----CHHHHHHHhcC
Q 021439 131 N-----SVQEIWVLATQ 142 (312)
Q Consensus 131 ~-----t~~el~~~~~~ 142 (312)
. ...+++.++..
T Consensus 240 ~~a~~~llG~llaL~sA 256 (416)
T KOG2765|consen 240 LPASRPLLGNLLALLSA 256 (416)
T ss_pred CCccchhHHHHHHHHHH
Confidence 2 34455555533
No 42
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.83 E-value=0.47 Score=46.18 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCccC
Q 021439 55 VGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (312)
Q Consensus 55 ~G~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~~~ 129 (312)
+=-+++.+-+-++++++...|+..=|+..-+-++.++++...+|+||++++.|...++...|+.++=+..+++.+
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~ 171 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG 171 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 334578887779999999999999999999999999999999999999999999999999999887544444433
No 43
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.72 E-value=0.068 Score=43.50 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=57.5
Q ss_pred cchhHHHHHHH-HHHHHHHHHHHHhhcccchhccc-hhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 49 LEPLWWVGMFT-MIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 49 ~~p~W~~G~~l-~~~g~~~~~~Al~fap~slV~PL-gal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
+|+.|.+.++. +++...+-..|+...|..+.-++ .+++.+..++.+..+.||+++..+++|..++++|++.+
T Consensus 28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 35566665554 55666677777777888877664 67888899999999999999999999999999998764
No 44
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=95.55 E-value=0.014 Score=55.09 Aligned_cols=61 Identities=15% Similarity=0.011 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEe
Q 021439 62 VGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (312)
Q Consensus 62 ~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~ 122 (312)
+++.+.+.++...|++.++++.-+..+++.+++.++++|+++...++|+++++.|+.++..
T Consensus 225 i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 225 VPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999776543
No 45
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.15 E-value=0.043 Score=51.70 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC-C-CCC-C-----CCCcccccch--------hHHHHHHHHH-HHHHHHH
Q 021439 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGAN-G-ARA-G-----SGGYGYLLEP--------LWWVGMFTMI-VGEIANF 68 (312)
Q Consensus 6 ~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~-~-~~~-~-----~~~~~~l~~p--------~W~~G~~l~~-~g~~~~~ 68 (312)
.+|+.+..+| .+.+...++-+|...-.+.. . .|- . -...-|.+.| .|++==..|. .|..+.+
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmy 115 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMY 115 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHH
Confidence 3677788888 77777777766654433321 0 010 0 0001122222 2221111121 2444566
Q ss_pred HHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEE
Q 021439 69 VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 69 ~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
.||.+.|++=-.=+.-.+-+++.++|+.+||||+|+.|.+|+.....|+++++
T Consensus 116 ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 116 YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 66666655544445567889999999999999999999999999999999875
No 46
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=94.57 E-value=0.058 Score=50.99 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCC-C-CCC----CC-----Cc---ccccchhHH----HHHHHHHHHHHHH
Q 021439 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-A-RAG----SG-----GY---GYLLEPLWW----VGMFTMIVGEIAN 67 (312)
Q Consensus 6 ~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~-~-~~~----~~-----~~---~~l~~p~W~----~G~~l~~~g~~~~ 67 (312)
..|+..++.|+++.+.-.+.-|+.. ..+..- . ... .. .. +-...+.+| .|+. ..+++.+.
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~y 228 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFFY 228 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5799999999999988887777532 111100 0 000 00 00 011222444 3444 46677788
Q ss_pred HHHHh-hcccchhccchhHHHHHHHHHHHHHhccccccchh----hhHHHHhhhheeEE
Q 021439 68 FVAYI-YAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIV 121 (312)
Q Consensus 68 ~~Al~-fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~----~G~~l~~~G~~lvv 121 (312)
+.+.. ..+.+.-.++..+..+.+.+.+.+++||+.+++++ +|+++++.|+.++.
T Consensus 229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 88888 99999999999999999999999999999999999 99999999988754
No 47
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=94.44 E-value=0.39 Score=46.72 Aligned_cols=126 Identities=21% Similarity=0.300 Sum_probs=78.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC--------------CCCC-CCCCcccccchhHHHHHHHHHHH-HHH
Q 021439 3 SSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN--------------GARA-GSGGYGYLLEPLWWVGMFTMIVG-EIA 66 (312)
Q Consensus 3 ~~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~--------------~~~~-~~~~~~~l~~p~W~~G~~l~~~g-~~~ 66 (312)
++.++|=++++.|+++.|+..++|++-.++.+.. ..-. --+ +.-+++-.|=.......+| .++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccCCChhhHHHHHHHHHH
Confidence 4678999999999999999999999976653320 0000 000 1111111121122222233 334
Q ss_pred HHHHHhhcccch------hccch-hHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCccC
Q 021439 67 NFVAYIYAPAVL------VTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (312)
Q Consensus 67 ~~~Al~fap~sl------V~PLg-al~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~~~ 129 (312)
.++-|...|..+ +..++ ..+-+++.++..++-|+++++.-++|-+++++|.++.....+++++
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 555555555533 12222 3346788888999999999999999999999998887665554443
No 48
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=93.82 E-value=0.35 Score=40.33 Aligned_cols=56 Identities=18% Similarity=0.424 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 021439 64 EIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (312)
Q Consensus 64 ~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~l 119 (312)
+..++..+....+.--+=++.+--+.+.+++..+.+|+++...+.|+.+++.|+.+
T Consensus 95 n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 95 NLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 34566667777777777888888999999999999999999999999999999764
No 49
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=93.75 E-value=0.083 Score=49.67 Aligned_cols=117 Identities=15% Similarity=0.242 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCC-------C----------CCCcccc----cc--------hhHH
Q 021439 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA-------G----------SGGYGYL----LE--------PLWW 54 (312)
Q Consensus 4 ~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~-------~----------~~~~~~l----~~--------p~W~ 54 (312)
.+..|..+++.|+++.++..++.||...+.+.+..+. + .+..+.. .+ ..|.
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 3567999999999999999999888543111100000 0 0000000 00 1121
Q ss_pred HHHHH----HHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 55 VGMFT----MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 55 ~G~~l----~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
.++.. +...+...+.++...+++-.+-.+.+--++..+++..+++|+++..+++|.++++.|+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 12111 1112234456777888888888888888999999999999999999999999999998764
No 50
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=91.76 E-value=3.5 Score=39.30 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=55.7
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhcccc---hhccchh-HHHHHHHHHHHHHhccccccchhhhHHHHhhhheeE
Q 021439 45 YGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAV---LVTPLGA-LSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (312)
Q Consensus 45 ~~~l~~p~W~~G~~l~~~g~~~~~~Al~fap~s---lV~PLga-l~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lv 120 (312)
++..|+|+=+....+-.+=...|..-|-+||-. +=+.+|= +..++|.++++.++|||+++.+|+++.+..+|+...
T Consensus 63 ~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~ 142 (293)
T COG2962 63 KQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ 142 (293)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 346677766666665555556788777777765 2233332 234688999999999999999999999999998753
No 51
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=90.20 E-value=0.36 Score=39.36 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=64.6
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHhhcccchhccch-hHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEE
Q 021439 44 GYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (312)
Q Consensus 44 ~~~~l~~p~W~~G~~l~~~g~~~~~~Al~fap~slV~PLg-al~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv 121 (312)
.+..+.++..|+=+++---|....+.-++-+|.++-.|+. +++..|++++...+-.|.-.++...|+.++++|+.+.+
T Consensus 46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 3456778888999999889999999999999999999985 67889999988776444455777899999999986643
No 52
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=89.94 E-value=2.8 Score=39.48 Aligned_cols=122 Identities=17% Similarity=0.151 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC---------------CCCCCCCCcccccchhHHHHHHHHHHH----H
Q 021439 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN---------------GARAGSGGYGYLLEPLWWVGMFTMIVG----E 64 (312)
Q Consensus 4 ~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~---------------~~~~~~~~~~~l~~p~W~~G~~l~~~g----~ 64 (312)
-.-+|+.+|+.+..|-+.=.+.-||.-...+.. +.-....+...+.-+.=..++..-+++ +
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence 356899999999999887777777754221110 000011112233333444444444444 4
Q ss_pred HHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecC
Q 021439 65 IANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (312)
Q Consensus 65 ~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p 125 (312)
.+..+|+.-.|...-.-+.++--.+.++....+|||++|..+|+|+++++.++.-......
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 5889999999999999999999999999999999999999999999999999875544333
No 53
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=89.70 E-value=1.3 Score=39.76 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc-----C-------------C--CCCCC--CCcccc--cchhHHHHHHH
Q 021439 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGA-----N-------------G--ARAGS--GGYGYL--LEPLWWVGMFT 59 (312)
Q Consensus 4 ~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~-----~-------------~--~~~~~--~~~~~l--~~p~W~~G~~l 59 (312)
+...|+...+.+.++.+..-+.|+|..++.+. . . .+++. ...+.+ ..+.+|.-.++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 45667766667777778888888887544210 0 0 00000 001111 12333333344
Q ss_pred HHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 021439 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (312)
Q Consensus 60 ~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~l 119 (312)
..+|..+-...+.+++.....=...+..+++.+++.++.+|+++...|.|+.++..|..+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 566666666778888888999999999999999999999999999999999999988653
No 54
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=85.20 E-value=4.5 Score=32.87 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=37.7
Q ss_pred ccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCC
Q 021439 80 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (312)
Q Consensus 80 ~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~ 126 (312)
+.-|.+-++.+..-....-|.+.++.||.|.+.|.+|+.++ .++|.
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vi-l~~pR 107 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVI-LFGPR 107 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeee-EeCCC
Confidence 45677888888888889999999999999999999995544 55554
No 55
>PRK02237 hypothetical protein; Provisional
Probab=82.46 E-value=1.5 Score=35.77 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=38.1
Q ss_pred ccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCC
Q 021439 80 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (312)
Q Consensus 80 ~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~ 126 (312)
+--|.+-++.+.+-.+..-|+|.++.|++|.++|.+|+.++ +++|.
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI-~~~pR 108 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI-MYAPR 108 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh-eecCC
Confidence 34567778888888999999999999999999999998765 35553
No 56
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=80.71 E-value=1.9 Score=35.07 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=37.7
Q ss_pred ccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecC
Q 021439 80 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (312)
Q Consensus 80 ~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p 125 (312)
+--|.+-++.+.+-.+..-|++.++.|++|..+|.+|+.++ +++|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI-~~~P 105 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII-LFAP 105 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe-EecC
Confidence 34567778888888999999999999999999999998776 4444
No 57
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=78.59 E-value=4 Score=38.56 Aligned_cols=61 Identities=23% Similarity=0.380 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchh----hhHHHHhhhhee
Q 021439 59 TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTM 119 (312)
Q Consensus 59 l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~----~G~~l~~~G~~l 119 (312)
+..+|+++.++|-.-.-+..=-|++=++++.+.+-+-+++||+=+++++ +|++++++|+++
T Consensus 204 ~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 204 IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 3566777778887777777888999999999999999999999888874 788889888764
No 58
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=78.53 E-value=0.9 Score=42.82 Aligned_cols=60 Identities=27% Similarity=0.485 Sum_probs=51.4
Q ss_pred HHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCc
Q 021439 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (312)
Q Consensus 68 ~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~ 127 (312)
.-||.+....-++=|-.-+.+.-.++++++||.|-+...+.|++.|+.|++++|...-+.
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a 155 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA 155 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecc
Confidence 457777777788888888888889999999999999999999999999999987755444
No 59
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=76.03 E-value=5.5 Score=38.03 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-ccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCccC
Q 021439 51 PLWWVGMFTMIVGEIANFVAYIYA-PAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (312)
Q Consensus 51 p~W~~G~~l~~~g~~~~~~Al~fa-p~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~~~ 129 (312)
+.|..=..++-.-++.|=.|+.|. |.-+=.=+=+-+++.|.++...++|+|-+.++...++++.+|+++.-+++.++..
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 445555555555566776677664 3333333567789999999999999999999999999999999988777665543
No 60
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=75.21 E-value=5 Score=38.91 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=41.5
Q ss_pred HHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 021439 69 VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (312)
Q Consensus 69 ~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~l 119 (312)
..+.-.++.--+=.+.+--++..+++..+++|+++..+++|+++++.|+.+
T Consensus 295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 455555555555566677788899999999999999999999999999865
No 61
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.60 E-value=4.8 Score=32.51 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=56.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHHHHHHHHHHHHH---HHHhhcccch
Q 021439 2 FSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANF---VAYIYAPAVL 78 (312)
Q Consensus 2 ~~~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~---~Al~fap~sl 78 (312)
|+..+.-+++-+.|+.|.... -+||++...++. -..---.|=+.++=+.+..-.|= ..|+-+-+-.
T Consensus 5 ~~~~l~~vlLL~~SNvFMTFA----WYghLk~~~~pl-------~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~ 73 (116)
T COG3169 5 MSVYLYPVLLLIGSNVFMTFA----WYGHLKFTNKPL-------VIVILASWGIAFFEYLLQVPANRIGHQVYSAAQLKT 73 (116)
T ss_pred CchHHHHHHHHHhhHHHHHHH----HHHHHhccCCch-------hHHHHHHhhHHHHHHHHhCccchhhhhhccHHHHHH
Confidence 455666777888888886554 256655332110 00001223222222222211111 1222222223
Q ss_pred hccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 021439 79 VTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (312)
Q Consensus 79 V~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~l 119 (312)
.| -++++..-.+|+-+++||++++..++|-.++..|+.+
T Consensus 74 mQ--EVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 74 MQ--EVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HH--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 33 2467777789999999999999888887777666544
No 62
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=68.13 E-value=4.5 Score=32.96 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 021439 84 ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (312)
Q Consensus 84 al~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~l 119 (312)
++++..-+++|.+++||++++...+|-++++.++.+
T Consensus 70 vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 70 VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 455556688999999999999988888877666544
No 63
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=64.07 E-value=32 Score=32.37 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCC--------------------CCCCc----ccccchhHHHHHHH-H
Q 021439 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA--------------------GSGGY----GYLLEPLWWVGMFT-M 60 (312)
Q Consensus 6 ~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~--------------------~~~~~----~~l~~p~W~~G~~l-~ 60 (312)
..|+.+.+.|-++.|.-.+.|+|-..+.+.+..+. ..+.. -..+.|..+.-+++ .
T Consensus 153 ~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s 232 (303)
T PF08449_consen 153 ALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS 232 (303)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence 34999999999999999999999765543311000 00000 01122333333332 3
Q ss_pred HHHHHHHHHH---HhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 021439 61 IVGEIANFVA---YIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (312)
Q Consensus 61 ~~g~~~~~~A---l~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~l 119 (312)
..+.+++..- ..--.+...+=...+--+++.+++.++.+++++...|.|.+++..|..+
T Consensus 233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 3344433222 2223333344455556677889999999999999999999999999764
No 64
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=63.72 E-value=1.5e+02 Score=29.04 Aligned_cols=254 Identities=16% Similarity=0.213 Sum_probs=123.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhHHh----h------------hhcC----CCCCCCCCccccc----chhHHHH
Q 021439 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLR----K------------AGAN----GARAGSGGYGYLL----EPLWWVG 56 (312)
Q Consensus 1 ~~~~~~iGv~LAl~ss~~ia~G~vlqk~~~~----~------------~~~~----~~~~~~~~~~~l~----~p~W~~G 56 (312)
|.++.++|+++-.+++++.+.=.+=.||--. . .|-- ..+ +..++++ +-+|+.-
T Consensus 1 m~~~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv~gi~swli~P~~~a~l~ip---~~~~i~~~~~~~~l~~~~ 77 (344)
T PF06379_consen 1 MNSAIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLVQGIFSWLIVPWLWALLAIP---DFFSIYSATPASTLFWTF 77 (344)
T ss_pred CCchHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHhCChhHHHHHH
Confidence 6678899999999999999887766665210 0 1100 000 1112222 1233332
Q ss_pred HH--HHHHHHHHHHHHHhhcccchhccc-hhHHHHHHHHHHHHHhcc-------ccccchhhhHHHHhhhheeEEeecCC
Q 021439 57 MF--TMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNE-------KLQKMGMLGCLLCVVGSTMIVLHAPL 126 (312)
Q Consensus 57 ~~--l~~~g~~~~~~Al~fap~slV~PL-gal~lv~~~~la~~~l~e-------~l~~~~~~G~~l~~~G~~lvv~~~p~ 126 (312)
+. +-.+|.+..-.+..+.-.++-+.+ ..++.++..++-+.+.++ +-...-.+|++++.+|+.++...+..
T Consensus 78 l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 78 LFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 22 123343333344444445554443 234555666666666543 22234579999999999888776654
Q ss_pred ccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHHhh-h-cc------cCCCcchhhhhhh----HhhhhhhHHHHHHHHH
Q 021439 127 EESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILY-C-AP------RYGQTNILIYIGI----CSVIGSLTVMSVKAIG 194 (312)
Q Consensus 127 ~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li~~-~-~~------r~g~~~~l~y~~i----~g~lg~~tvl~~K~~~ 194 (312)
.++..+. |-.+.-.+.+.++-...-+..+++-.-. . .| .+|... .|... --+.||+..-+.=++-
T Consensus 158 Ke~~~~~-~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~--l~~~l~~~vvv~~GGf~tN~~yc~~ 234 (344)
T PF06379_consen 158 KEKELGE-EAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNP--LYANLPVYVVVLWGGFITNLIYCLI 234 (344)
T ss_pred hhhhhcc-chhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCc--HHHhCchhhhhhhhHHHHHHHHHHH
Confidence 3333222 1111111122221111111111111100 0 11 122211 12111 1134566555555544
Q ss_pred HHHH-HHhc--CCccc-chh--HHHHHHHHHHHHHHHHHHHHh------------------------------h---ccc
Q 021439 195 IAIK-LTLE--GLNQA-KCI--ETWIFAMVALTCVITQLNYLN------------------------------M---DYS 235 (312)
Q Consensus 195 ~~l~-~~~~--G~~~~-~~~--~~y~li~~~v~~~~~Q~~~LN------------------------------f---e~~ 235 (312)
...+ .+.+ +|... +.+ .-|++.+..-+.=..|..+.. + ||+
T Consensus 235 ~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~lkEWK 314 (344)
T PF06379_consen 235 LLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLILKEWK 314 (344)
T ss_pred HHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4333 2222 22111 122 235555544444457777655 1 999
Q ss_pred CCCHHHHHHHHHHHHHHhhheeeec
Q 021439 236 GQSASSIASELCGFITVLSGTSVLH 260 (312)
Q Consensus 236 ~~~~~~i~~~~~G~~~i~~GV~lLs 260 (312)
+.+....-...+|+.+++..+.++.
T Consensus 315 g~s~kt~~vl~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 315 GASKKTIRVLVLGIAVLILSVVIVG 339 (344)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHh
Confidence 9999888888999999988877654
No 65
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=61.03 E-value=56 Score=30.15 Aligned_cols=109 Identities=22% Similarity=0.351 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC--------------------CCCCCC--CCcccccchhHHH--HHHH
Q 021439 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN--------------------GARAGS--GGYGYLLEPLWWV--GMFT 59 (312)
Q Consensus 4 ~~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~--------------------~~~~~~--~~~~~l~~p~W~~--G~~l 59 (312)
+..+|+.+.++++++.+.+-+...|-+++.+.+ ..++++ .....++-..||. =+.+
T Consensus 111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence 467999999999999999998888876653210 001000 0112222222222 2223
Q ss_pred HHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHH
Q 021439 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLL 112 (312)
Q Consensus 60 ~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l 112 (312)
..+|-+.-...+.++.-.+=.=-.+++++.+++++..+.+.+++..-.+|+.+
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 34444444455666666655556678888888888888888888877776654
No 66
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=60.67 E-value=16 Score=33.42 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEee
Q 021439 64 EIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (312)
Q Consensus 64 ~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~ 123 (312)
+-....|+.-..++.++.+.+..--|-.+++...||+|+.-.+++..++.+.|++++.+.
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 446678899999999999999999999999999999999999999999999999887654
No 67
>COG2510 Predicted membrane protein [Function unknown]
Probab=59.77 E-value=60 Score=27.64 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=17.9
Q ss_pred cCCCHHHHHHHHHHHHHHhhheeeeccc
Q 021439 235 SGQSASSIASELCGFITVLSGTSVLHST 262 (312)
Q Consensus 235 ~~~~~~~i~~~~~G~~~i~~GV~lLs~~ 262 (312)
++++..++ +|++.+.+|+.+++.+
T Consensus 117 E~ls~~~~----iG~~LI~~Gailvs~~ 140 (140)
T COG2510 117 ERLSLPTW----IGIVLIVIGAILVSLR 140 (140)
T ss_pred CCCCHHHH----HHHHHHHhCeeeEecC
Confidence 45565554 5888999999998753
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=57.97 E-value=22 Score=34.87 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhccccc--cch----hhhHHHHhhhheeEEe
Q 021439 84 ALSIIVSAVLAHFMLNEKLQ--KMG----MLGCLLCVVGSTMIVL 122 (312)
Q Consensus 84 al~lv~~~~la~~~l~e~l~--~~~----~~G~~l~~~G~~lvv~ 122 (312)
..+++++.+=.- ++||+=+ +++ ++|++++++|++++.+
T Consensus 298 ~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 298 SFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred cHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 444455544344 4899877 444 6999999999887654
No 69
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=52.59 E-value=5.2 Score=38.66 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEe
Q 021439 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (312)
Q Consensus 60 ~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~ 122 (312)
+.+|-++.-.|+..-|.+.+|-+-++..+++++++.++.+|+.++.-+.-...++.|+.+-..
T Consensus 93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 456777788899999999999999999999999999999999999999888888888766433
No 70
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=50.24 E-value=63 Score=30.86 Aligned_cols=79 Identities=15% Similarity=0.272 Sum_probs=53.7
Q ss_pred cccchhHHHHHHHHHHHHHHHH----HHHhhcccchhccchhHHHHHHHHHHHHHh-ccc--cccch----hhhHHHHhh
Q 021439 47 YLLEPLWWVGMFTMIVGEIANF----VAYIYAPAVLVTPLGALSIIVSAVLAHFML-NEK--LQKMG----MLGCLLCVV 115 (312)
Q Consensus 47 ~l~~p~W~~G~~l~~~g~~~~~----~Al~fap~slV~PLgal~lv~~~~la~~~l-~e~--l~~~~----~~G~~l~~~ 115 (312)
-+++|.-|.=++.++...+.|. -|+..-+.++|.|+--+......+++...+ +|- ++..+ ..|+..++.
T Consensus 206 ~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~ 285 (300)
T PF05653_consen 206 QFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIII 285 (300)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 4566666655555555444443 478899999999999888877777766655 542 33333 478889999
Q ss_pred hheeEEeecC
Q 021439 116 GSTMIVLHAP 125 (312)
Q Consensus 116 G~~lvv~~~p 125 (312)
|+.++..+.+
T Consensus 286 GV~lL~~~~~ 295 (300)
T PF05653_consen 286 GVFLLSSSKD 295 (300)
T ss_pred hhheeeccCc
Confidence 9988755443
No 71
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=47.15 E-value=1.1e+02 Score=30.77 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCC-------------ccCcCCHHHHHHHhcChhHHHHH
Q 021439 83 GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL-------------EESLNSVQEIWVLATQPAFLLYV 149 (312)
Q Consensus 83 gal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~-------------~~~~~t~~el~~~~~~~~fl~y~ 149 (312)
|+++-...+.++-++.+..-+..-|++....++=..++....|+ +.++.+.+|+.+.++.|.|..+.
T Consensus 147 GSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~ 226 (412)
T PF01306_consen 147 GSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFV 226 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHH
Confidence 66677777777776665444444455544322222222222211 11223566889999999987665
Q ss_pred HHHHH
Q 021439 150 GSVVA 154 (312)
Q Consensus 150 ~~~~~ 154 (312)
..+..
T Consensus 227 l~v~g 231 (412)
T PF01306_consen 227 LFVIG 231 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 72
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.47 E-value=5.4 Score=38.07 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhhe
Q 021439 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGST 118 (312)
Q Consensus 60 ~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~ 118 (312)
++++...|-..+.|-|.+.=+-==++..+||.+++..++|++-+..-..+|.+++.|-.
T Consensus 112 fi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 112 FILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred eeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhe
Confidence 44455567777888888777777788999999999999999988888888888888854
No 73
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=46.03 E-value=1.2e+02 Score=28.71 Aligned_cols=195 Identities=15% Similarity=0.246 Sum_probs=115.7
Q ss_pred cccchhHHHHHHH---HHHHHHHHHHHHhhcccchhccch-hHHHHHHHHHHHHHhccccccch----hhhHHHHhhhhe
Q 021439 47 YLLEPLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMG----MLGCLLCVVGST 118 (312)
Q Consensus 47 ~l~~p~W~~G~~l---~~~g~~~~~~Al~fap~slV~PLg-al~lv~~~~la~~~l~e~l~~~~----~~G~~l~~~G~~ 118 (312)
.+.-..|..|++. -.+|+..||=|..+-..|--.|+. +..++-+.+++-+.+||=-+... .++.++++.|..
T Consensus 53 ~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~ 132 (288)
T COG4975 53 ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIY 132 (288)
T ss_pred ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhhe
Confidence 4444678888874 357888999999999999999996 57888999999999999776554 477888899988
Q ss_pred eEEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHHhhhcccCCCcchhhhhhhHhh--hhhhHHHHHHHHHHH
Q 021439 119 MIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSV--IGSLTVMSVKAIGIA 196 (312)
Q Consensus 119 lvv~~~p~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li~~~~~r~g~~~~l~y~~i~g~--lg~~tvl~~K~~~~~ 196 (312)
+-..-.+.+.+..+++.+.+-. ..+.+ ...| -..|..+--. +.+.+.++-++++..
T Consensus 133 lTs~~~~~nk~~~~~~n~kkgi----------~~L~i---------St~G---Yv~yvvl~~~f~v~g~saiLPqAiGMv 190 (288)
T COG4975 133 LTSKQDRNNKEEENPSNLKKGI----------VILLI---------STLG---YVGYVVLFQLFDVDGLSAILPQAIGMV 190 (288)
T ss_pred EeeeeccccccccChHhhhhhe----------eeeee---------eccc---eeeeEeeeccccccchhhhhHHHHHHH
Confidence 8766555444455555444321 01000 0000 0111111110 455666666666554
Q ss_pred HHHHh---cCCcccchhHHHHHHHHHHHHHHHHHHHHh---------------------------hcccCCCHHHHHHHH
Q 021439 197 IKLTL---EGLNQAKCIETWIFAMVALTCVITQLNYLN---------------------------MDYSGQSASSIASEL 246 (312)
Q Consensus 197 l~~~~---~G~~~~~~~~~y~li~~~v~~~~~Q~~~LN---------------------------fe~~~~~~~~i~~~~ 246 (312)
+.... .+.+...+-.+|.-++..+.-++--+.++- |--++=|..++....
T Consensus 191 ~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~ 270 (288)
T COG4975 191 IGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVI 270 (288)
T ss_pred HHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhh
Confidence 33221 222233334445444433333322222221 122445888999999
Q ss_pred HHHHHHhhheeeecccC
Q 021439 247 CGFITVLSGTSVLHSTR 263 (312)
Q Consensus 247 ~G~~~i~~GV~lLs~~~ 263 (312)
.|.++++.|..+|.--|
T Consensus 271 iGiilivvgai~lg~~K 287 (288)
T COG4975 271 IGIILIVVGAILLGIAK 287 (288)
T ss_pred hhHHHHHHHhhhhheec
Confidence 99999999988876543
No 74
>PLN02810 carbon-monoxide oxygenase
Probab=39.99 E-value=2.8e+02 Score=25.76 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=27.0
Q ss_pred cccCCCHHHHHHHHHHHHHHhhheeeecccCCCCC
Q 021439 233 DYSGQSASSIASELCGFITVLSGTSVLHSTREPDT 267 (312)
Q Consensus 233 e~~~~~~~~i~~~~~G~~~i~~GV~lLs~~~~~~~ 267 (312)
++++.++...+.-..|+++++.|++.+-.-..+++
T Consensus 186 ~~~~~~~Ea~lvN~~Glliv~fg~~V~~~~~~~~~ 220 (231)
T PLN02810 186 GLDKYGSEALLVNFTAIITILYGAFVVLTALAQSP 220 (231)
T ss_pred CcCCCCchhhhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 67778889999999999999999877655444443
No 75
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=38.46 E-value=3.1e+02 Score=24.93 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-HHhhhhcCCCCCCCCCcccccchhHHHHHHHHHHHHHH---HHHHHhhcccchh-
Q 021439 5 NLIGFILAVVSSAFIGSSFIIKKK-GLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIA---NFVAYIYAPAVLV- 79 (312)
Q Consensus 5 ~~iGv~LAl~ss~~ia~G~vlqk~-~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~---~~~Al~fap~slV- 79 (312)
...|++--++.++.-++..-+..+ ..+-.. +--+||.||=+++...+.... -+.+-+|.|.++=
T Consensus 123 ~~~GlItlll~a~vgGfamy~my~y~yr~~a-----------d~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~ 191 (226)
T COG4858 123 QVYGLITLLLTAVVGGFAMYIMYYYAYRMRA-----------DNSQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNP 191 (226)
T ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHHhhc-----------ccccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc
Confidence 445666666666666666544444 322111 122468899888877666543 3467788888863
Q ss_pred -ccchhHHHHHHHHHH-HHHhccccccch
Q 021439 80 -TPLGALSIIVSAVLA-HFMLNEKLQKMG 106 (312)
Q Consensus 80 -~PLgal~lv~~~~la-~~~l~e~l~~~~ 106 (312)
-|=-++.++-..++| ++++|++.+.+.
T Consensus 192 ~L~pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 192 QLPPIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344445555555555 566788877653
No 76
>PLN02680 carbon-monoxide oxygenase
Probab=38.19 E-value=2e+02 Score=26.63 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=22.0
Q ss_pred cccCCCHHHHHHHHHHHHHHhhheeeec
Q 021439 233 DYSGQSASSIASELCGFITVLSGTSVLH 260 (312)
Q Consensus 233 e~~~~~~~~i~~~~~G~~~i~~GV~lLs 260 (312)
.+++.++...+.=.+|+++++.|++++-
T Consensus 187 ~~~~~~~e~~lvN~~gl~~~~fg~~V~~ 214 (232)
T PLN02680 187 VISRYSTEAMLVNSLGILIVVLGGFVIL 214 (232)
T ss_pred ccCCCCchhhhHhHHHHHHHHHHHHHHH
Confidence 4667778888888999999888776543
No 77
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.61 E-value=2.6e+02 Score=24.85 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHHHHHHHHHHH---HHHHHhhcccch---hcc
Q 021439 8 GFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIA---NFVAYIYAPAVL---VTP 81 (312)
Q Consensus 8 Gv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~---~~~Al~fap~sl---V~P 81 (312)
|+.--++.++..++.+.+-.+-..+... .-+++.||-.++..++..+. -+...++.|..+ +.|
T Consensus 112 gi~tli~~~i~~G~~~~~~~~~i~~~~~-----------~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~ 180 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFIFKYIYPYKK-----------KKKRPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPP 180 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccc-----------cccccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCH
Confidence 5544455666666665554443322111 11234455544433333222 222233455553 444
Q ss_pred chhHHHHHHHHHHHHHhccccccc
Q 021439 82 LGALSIIVSAVLAHFMLNEKLQKM 105 (312)
Q Consensus 82 Lgal~lv~~~~la~~~l~e~l~~~ 105 (312)
...+-+-.-+...++++|.|.+..
T Consensus 181 ~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 181 WVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444444455667888889888754
No 78
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=35.20 E-value=15 Score=30.71 Aligned_cols=34 Identities=6% Similarity=0.066 Sum_probs=28.7
Q ss_pred ccCCCHHHHHHHHHHHHHHhhheeeecccCCCCC
Q 021439 234 YSGQSASSIASELCGFITVLSGTSVLHSTREPDT 267 (312)
Q Consensus 234 ~~~~~~~~i~~~~~G~~~i~~GV~lLs~~~~~~~ 267 (312)
-++.++|++.++++.++++++|++||.++-..+.
T Consensus 29 ~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANR 62 (125)
T PF15048_consen 29 VEDATPWNYSILALSFVVLVISFFLLGRSIQANR 62 (125)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 4677999999999999999999999986654444
No 79
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=35.20 E-value=3.1e+02 Score=26.72 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHhccccccchhhhHHHHhhhheeEEeecCCc
Q 021439 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (312)
Q Consensus 60 ~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~~ 127 (312)
-.++.-++.-|+.+..--...=-=+.-++--+++...+-|+|.+..|.+-.+++.+|+.++.++.+++
T Consensus 93 n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 93 NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 35566678888887765444333445566677888888999999999999999999998888885544
No 80
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=34.50 E-value=3.5e+02 Score=24.68 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=25.4
Q ss_pred cccCCCHHHHHHHHHHHHHHhhheeeecccC
Q 021439 233 DYSGQSASSIASELCGFITVLSGTSVLHSTR 263 (312)
Q Consensus 233 e~~~~~~~~i~~~~~G~~~i~~GV~lLs~~~ 263 (312)
++++.++...+.=.+|+++++.|++++-.-.
T Consensus 165 ~~~~~~~e~~l~N~~gl~~~~fg~~V~~~~~ 195 (214)
T cd08764 165 KYSNLPAEGVLGNFIGIVLVIFGGLVVYLVT 195 (214)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5778889999999999999999987765433
No 81
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=33.82 E-value=1.6e+02 Score=23.51 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=26.5
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHH-hhcccCCCHHHHHHHHHHHHHHh
Q 021439 209 CIETWIFA-MVALTCVITQLNYL-NMDYSGQSASSIASELCGFITVL 253 (312)
Q Consensus 209 ~~~~y~li-~~~v~~~~~Q~~~L-Nfe~~~~~~~~i~~~~~G~~~i~ 253 (312)
...++..+ ++.++=++.|..|+ +++.++...++...+.++.++++
T Consensus 32 ~~~~~~~i~~~A~iQi~vqL~~FlHl~~~~~~~~n~~~l~Ft~~i~~ 78 (96)
T TIGR02847 32 KGLTLVIIIVLAVVQILVHLVFFLHLNTSSEQRWNLISLLFTILIIF 78 (96)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHH
Confidence 33344333 33334466777764 34556667888888888766643
No 82
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=32.13 E-value=15 Score=35.17 Aligned_cols=11 Identities=18% Similarity=-0.131 Sum_probs=0.0
Q ss_pred CHHHHHHHHHH
Q 021439 238 SASSIASELCG 248 (312)
Q Consensus 238 ~~~~i~~~~~G 248 (312)
|+|+++.|++.
T Consensus 135 s~WtiLaFcLA 145 (381)
T PF05297_consen 135 SFWTILAFCLA 145 (381)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 83
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=31.55 E-value=1.6e+02 Score=23.31 Aligned_cols=47 Identities=13% Similarity=-0.017 Sum_probs=26.6
Q ss_pred cchhHHHHHHH-HHHHHHHHHHHHH-hhcccCCCHHHHHHHHHHHHHHh
Q 021439 207 AKCIETWIFAM-VALTCVITQLNYL-NMDYSGQSASSIASELCGFITVL 253 (312)
Q Consensus 207 ~~~~~~y~li~-~~v~~~~~Q~~~L-Nfe~~~~~~~~i~~~~~G~~~i~ 253 (312)
+..+.++..++ +.++=++.|+.|+ +++.++...++...+.+|..+++
T Consensus 32 ~~~~~~~~~i~~lA~iQi~VqL~~FLHm~~~~~~~~n~~~l~ft~~i~~ 80 (94)
T TIGR02901 32 LPLAMGLTIIIIFAFIQAGLQLIMFMHAGESEDGKVQIYNIYYSAFIAL 80 (94)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHheeecCCcccchHHHHHHHHHHHHH
Confidence 33344443333 3334467777764 23544455688888888877654
No 84
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.70 E-value=2.5e+02 Score=21.62 Aligned_cols=22 Identities=14% Similarity=0.392 Sum_probs=15.7
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q 021439 47 YLLEPLWWVGMFTMIVGEIANF 68 (312)
Q Consensus 47 ~l~~p~W~~G~~l~~~g~~~~~ 68 (312)
-+|+|.||++++..++-.+-++
T Consensus 7 R~kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 7 RFKNKAFWVALISAILLLVQQV 28 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHH
Confidence 4689999999887665544443
No 85
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=30.14 E-value=1.8e+02 Score=23.71 Aligned_cols=38 Identities=8% Similarity=0.212 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHH-hhcccCCCHHHHHHHHHHHHHH
Q 021439 215 FAMVALTCVITQLNYL-NMDYSGQSASSIASELCGFITV 252 (312)
Q Consensus 215 li~~~v~~~~~Q~~~L-Nfe~~~~~~~~i~~~~~G~~~i 252 (312)
++++.++=++.|+.|+ +++.++...|+...+.++..++
T Consensus 50 i~~lA~vQi~VqL~~FLHl~~~~~~~wn~~al~Ft~~i~ 88 (109)
T PRK10582 50 ILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFVFTVLII 88 (109)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHHHH
Confidence 3344444566777764 2355555678888777776643
No 86
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=29.69 E-value=1.1e+02 Score=25.63 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=24.4
Q ss_pred HHHHHHHHHH----HhccccccchhhhHHHHhhhhee
Q 021439 87 IIVSAVLAHF----MLNEKLQKMGMLGCLLCVVGSTM 119 (312)
Q Consensus 87 lv~~~~la~~----~l~e~l~~~~~~G~~l~~~G~~l 119 (312)
++.+.++=++ .-|++++..+.+|.+++++|+.+
T Consensus 102 l~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 102 LIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3444555554 35689999999999999999753
No 87
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=28.92 E-value=8.5e+02 Score=27.80 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=19.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhh
Q 021439 49 LEPLWWVGMFTMIVGEIANFVAYIY 73 (312)
Q Consensus 49 ~~p~W~~G~~l~~~g~~~~~~Al~f 73 (312)
||-.||+-+++.+++.+.+.+-...
T Consensus 74 ~r~Aw~~~~~~~~~~~~~~l~~~l~ 98 (1094)
T PRK02983 74 KRAAWWVLLAYLVLAALLNVALLAL 98 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999988887765543
No 88
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=28.59 E-value=2e+02 Score=26.24 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCC-CCCC------cccccchhHHHHHHHHHHHH
Q 021439 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA-GSGG------YGYLLEPLWWVGMFTMIVGE 64 (312)
Q Consensus 5 ~~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~-~~~~------~~~l~~p~W~~G~~l~~~g~ 64 (312)
.++|+.+.+++-++-.++.. ||+..++.+++..+- .++. ..|+-+-++|.|+.++..+.
T Consensus 121 ~~~g~~l~~~g~~~E~~AD~-Q~~~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~ 186 (235)
T PF06966_consen 121 DILGIALFLIGFLLETVADQ-QKYRFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS 186 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence 46788888888777777765 444455554421111 1121 25666789999999887765
No 89
>COG1008 NuoM NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]
Probab=27.89 E-value=2.4e+02 Score=29.06 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHHHHHH----------HHHHHHHHHH--hhcccchhcc
Q 021439 14 VSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMI----------VGEIANFVAY--IYAPAVLVTP 81 (312)
Q Consensus 14 ~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~----------~g~~~~~~Al--~fap~slV~P 81 (312)
.+++|..+|.+.+|.+.++..+- ....++-.|..++.+.. .|.++.|.-+ .|..-.+++=
T Consensus 339 sa~LFl~vG~iy~r~hTr~i~~~--------GGl~~~mP~~aa~~~~~~mAs~glPG~sgFvgEFlil~G~f~~~~~~~~ 410 (497)
T COG1008 339 SAALFLLVGVLYERTHTRDIADL--------GGLANKMPKLAALFMLFAMASLGLPGTSGFVGEFLILLGSFQVFPWVAF 410 (497)
T ss_pred HHHHHHHHHHHHHhhcchhHHHh--------CCHHhhChHHHHHHHHHHHHhcCCCccchHHHHHHHHhhhhhhhHHHHH
Confidence 45667777877777665554421 12444555555544321 2233333322 2444457777
Q ss_pred chhHHHHHHHHHHHHHhccc
Q 021439 82 LGALSIIVSAVLAHFMLNEK 101 (312)
Q Consensus 82 Lgal~lv~~~~la~~~l~e~ 101 (312)
+.++++++++.-.-++.||-
T Consensus 411 la~~g~iltA~Y~L~~~~rv 430 (497)
T COG1008 411 LAAFGLILTAVYMLWMYQRV 430 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88899999999888888873
No 90
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=27.81 E-value=2.5e+02 Score=26.52 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccc---chhccchhH--HHHHHHHH---HHHHhccccccchhhhHHHHhhhheeEEeecCC
Q 021439 55 VGMFTMIVGEIANFVAYIYAPA---VLVTPLGAL--SIIVSAVL---AHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (312)
Q Consensus 55 ~G~~l~~~g~~~~~~Al~fap~---slV~PLgal--~lv~~~~l---a~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~ 126 (312)
+||..+..|.+.....+..... .++.|+.++ +.+...+. +....|-++...+.-=+-+...|+..+.-++.-
T Consensus 75 IGm~alGmG~ia~l~G~~i~~~~~~~l~~PI~~~iiA~IiG~vvG~la~~vi~MkIPim~~s~tels~agaL~ilG~s~a 154 (262)
T PF04211_consen 75 IGMMALGMGIIAALAGLAIGGIGIPNLAGPIIALIIAAIIGAVVGLLANKVIGMKIPIMEQSMTELSGAGALAILGFSAA 154 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHcccccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888877777776654 566676543 22333332 222333344433333333444444333333333
Q ss_pred ccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHH--hhhcccCCCcchhhhhhhHhhhhhhHH
Q 021439 127 EESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI--LYCAPRYGQTNILIYIGICSVIGSLTV 187 (312)
Q Consensus 127 ~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li--~~~~~r~g~~~~l~y~~i~g~lg~~tv 187 (312)
-...++.+.+......+.++.-.++.-..++.-= --..|.-.|+|-+..+..||.+.-+.+
T Consensus 155 iaGsf~~~~i~~~vi~~G~IAl~Fi~~~mAIlHPFNACLGPnE~q~RTL~la~~~G~ls~ii~ 217 (262)
T PF04211_consen 155 IAGSFDFDSIITSVINTGYIALLFIIGGMAILHPFNACLGPNESQDRTLTLAVECGFLSMIIF 217 (262)
T ss_pred HhccccHHHHHHHHhccCHHHHHHHHHHHHhcCccccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence 3445677888888878887654443322221000 013455567788888888887754443
No 91
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=26.93 E-value=1.3e+02 Score=24.10 Aligned_cols=54 Identities=9% Similarity=-0.019 Sum_probs=29.1
Q ss_pred cCCHHHHHHHhcChhHHHHHHHHHHHHHHHHhhhcccCCCcchhhhhhhHhhhhh
Q 021439 130 LNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGS 184 (312)
Q Consensus 130 ~~t~~el~~~~~~~~fl~y~~~~~~~~~~li~~~~~r~g~~~~l~y~~i~g~lg~ 184 (312)
+..-.++++.+.++.-.+|..++.++..++ -..+...+.++.++-+.+||+++-
T Consensus 5 P~~W~~ll~wl~~~~~~~~~a~lA~~mA~L-R~~Y~g~~~~r~llea~lCg~lal 58 (100)
T PF05106_consen 5 PDFWAQLLAWLQSHWPQIYGALLAFVMALL-RGAYGGGSWRRRLLEALLCGLLAL 58 (100)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 344556666666444444433333222222 112244456778999999998743
No 92
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=22.91 E-value=2.3e+02 Score=23.76 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=28.0
Q ss_pred cCCHHHHHHHhcChhHHHHHHHHHHHHHHHHhh-hcc-cCCCcchhhhhhhHhhhhhhHHHHHHHH
Q 021439 130 LNSVQEIWVLATQPAFLLYVGSVVAVALVLILY-CAP-RYGQTNILIYIGICSVIGSLTVMSVKAI 193 (312)
Q Consensus 130 ~~t~~el~~~~~~~~fl~y~~~~~~~~~~li~~-~~~-r~g~~~~l~y~~i~g~lg~~tvl~~K~~ 193 (312)
..++++.++-+++-...+.=+++.++..+...| ... ..+ ..-..+-.++|+++|+-++.+-.+
T Consensus 65 ~~t~~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~~~-~~~~~~Rvllgl~~al~vlvAEv~ 129 (142)
T PF11712_consen 65 EDTPAQELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYSFG-GWSFPYRVLLGLFGALLVLVAEVV 129 (142)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555444333333333333333233 222 121 112233456666666666655443
No 93
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=21.24 E-value=7.2e+02 Score=23.67 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 021439 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANF 68 (312)
Q Consensus 6 ~iGv~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~ 68 (312)
...+...+++.+..-.++...|+|..+..+.+.+-+ ..+.-..+-..|.++.++|.+...
T Consensus 46 ~~~i~~~ii~lvl~iia~~~lr~GF~~L~~~~~~~~---iG~tG~~Lilig~il~iig~i~~i 105 (285)
T PF06157_consen 46 IVAIISLIIGLVLGIIAFYRLRRGFRILSSYDRDVG---IGKTGATLILIGYILIIIGAILAI 105 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---chhhhhHHHHHHHHHHHHHHHHHH
Confidence 344455556666666777777888766543221111 223333444555555555554333
No 94
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=21.16 E-value=6.8e+02 Score=26.86 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=34.5
Q ss_pred HHHHHHhccccccchhhhHHHHhhhhee-EEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHH
Q 021439 92 VLAHFMLNEKLQKMGMLGCLLCVVGSTM-IVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALV 158 (312)
Q Consensus 92 ~la~~~l~e~l~~~~~~G~~l~~~G~~l-vv~~~p~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~ 158 (312)
++++++.+-+.+-....=++-...++.+ +..++|..+--.++||... +..+..+.|-.++.++++.
T Consensus 214 ~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~-~fp~ktlw~sff~aLsAv~ 280 (696)
T KOG0475|consen 214 IFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSY-YFPLKTLWRSFFCALSAVT 280 (696)
T ss_pred hHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhh-cCCccchHHHHHHHHHHHH
Confidence 3455555544442222222223333333 3456677777788888883 3345566665555544443
No 95
>PLN02351 cytochromes b561 family protein
Probab=20.73 E-value=2.2e+02 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=21.4
Q ss_pred cccCCCHHHHHHHHHHHHHHhhheee
Q 021439 233 DYSGQSASSIASELCGFITVLSGTSV 258 (312)
Q Consensus 233 e~~~~~~~~i~~~~~G~~~i~~GV~l 258 (312)
.+++.++...+.=.+|+++++.|+++
T Consensus 190 ~y~~~~~Ea~lvN~~Glliv~fG~~V 215 (242)
T PLN02351 190 NVSKHGSESMVVNGLGLGLALLSGIV 215 (242)
T ss_pred ccccCCchhhhHHHHHHHHHHHHHHH
Confidence 46778889999999999999998443
No 96
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=20.28 E-value=4e+02 Score=25.19 Aligned_cols=133 Identities=19% Similarity=0.216 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc---ccchhccchhH--HHHHHHHHHH---HHhccccccchhhhHHHHhhhheeEEeecCC
Q 021439 55 VGMFTMIVGEIANFVAYIYA---PAVLVTPLGAL--SIIVSAVLAH---FMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (312)
Q Consensus 55 ~G~~l~~~g~~~~~~Al~fa---p~slV~PLgal--~lv~~~~la~---~~l~e~l~~~~~~G~~l~~~G~~lvv~~~p~ 126 (312)
+||+.+..|.+......... ++.++.|.-++ +.+..++.+. ...|-|+...+.-=+-+...|+..+.-++.-
T Consensus 68 IGmlalGmG~iaal~G~~i~~~~~~~~~~PI~~liia~iiG~vvG~lan~vigMkIPiM~~smtels~agaLailG~s~a 147 (264)
T PRK01030 68 IGMLALGMGTIAALAGVAIGDALGIVLAGPIVALIIAAIIGAVVGKLANNVVGMKIPIMERSMTELSGAGALAILGFSTA 147 (264)
T ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888877777666665 23477786543 2233333222 2223333333332233333333333233332
Q ss_pred ccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHH--hhhcccCCCcchhhhhhhHhhhhhhHH
Q 021439 127 EESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI--LYCAPRYGQTNILIYIGICSVIGSLTV 187 (312)
Q Consensus 127 ~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li--~~~~~r~g~~~~l~y~~i~g~lg~~tv 187 (312)
-....+.+.+.....+++++.-+++....++.-= --..|.-.|+|-+..+..||.+.-+-.
T Consensus 148 ~~Gsf~~~~~~~~vi~~G~IAl~FI~~~mAIlHPFNACLGP~E~q~RTL~la~e~G~ls~ii~ 210 (264)
T PRK01030 148 IAGSFDFDAIITSVIATGFIALLFILGGMAILHPFNACLGPNESQDRTLTLAVECGFLSMIIF 210 (264)
T ss_pred HhCcccHHHHHHHHhcccHHHHHHHHHHHHhcCccccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence 2334678888888888887655444422221100 013455567788888888887754433
Done!