Query 021439
Match_columns 312
No_of_seqs 194 out of 595
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:10:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.7 5.8E-08 2E-12 78.0 9.4 99 10-123 5-104 (110)
2 2i68_A Protein EMRE; transmemb 98.6 5.9E-08 2E-12 81.2 5.7 100 10-124 5-105 (137)
3 3arc_J Photosystem II reaction 16.3 1.3E+02 0.0044 19.3 2.9 11 49-59 7-17 (40)
4 1uvq_C Orexin; immunology, MHC 14.5 69 0.0024 19.2 1.2 20 272-291 4-24 (33)
5 3gia_A Uncharacterized protein 7.5 1.2E+03 0.04 20.9 11.0 28 75-102 339-369 (444)
6 3mhp_C TIC62_peptide, ferredox 7.5 3E+02 0.01 15.9 2.2 14 268-281 10-23 (26)
7 4a2n_B Isoprenylcysteine carbo 6.8 1E+03 0.035 19.6 6.5 22 43-65 119-140 (194)
8 3arc_L Photosystem II reaction 6.2 5.6E+02 0.019 15.9 3.2 22 210-231 16-37 (37)
9 2zxe_G FXYD10, phospholemman-l 5.6 1.9E+02 0.0064 21.0 0.9 26 238-263 17-42 (74)
10 2fp7_A Serine protease subunit 5.4 1.8E+02 0.0061 19.8 0.6 25 276-301 27-51 (54)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.71 E-value=5.8e-08 Score=78.01 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcccchhccc-hhHHHH
Q 021439 10 ILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSII 88 (312)
Q Consensus 10 ~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~fap~slV~PL-gal~lv 88 (312)
.+-+.+.++...|....|++. + ..+.+.++.+.+.+.++..+...|+...|++.+.|+ .+++.+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~---~------------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v 69 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSE---G------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---C------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHH
Confidence 445667788889999988851 0 112355667777888999988899999999999999 899999
Q ss_pred HHHHHHHHHhccccccchhhhHHHHhhhheeEEee
Q 021439 89 VSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (312)
Q Consensus 89 ~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~ 123 (312)
++++++.+++||+++..+++|+.+++.|++++-..
T Consensus 70 ~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.57 E-value=5.9e-08 Score=81.18 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcccchhccc-hhHHHH
Q 021439 10 ILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSII 88 (312)
Q Consensus 10 ~LAl~ss~~ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~fap~slV~PL-gal~lv 88 (312)
++-+++.++.+.|..+.|++. . ..+.+.++.|++.++++..+...++...|++.+.|+ .+++.+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~---g------------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSE---G------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc---c------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 345567788889999988862 1 112355678888899999999999999999999999 999999
Q ss_pred HHHHHHHHHhccccccchhhhHHHHhhhheeEEeec
Q 021439 89 VSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (312)
Q Consensus 89 ~~~~la~~~l~e~l~~~~~~G~~l~~~G~~lvv~~~ 124 (312)
++++++.+++||+++..+++|++++++|++++-..+
T Consensus 70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999988765433
No 3
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=16.31 E-value=1.3e+02 Score=19.29 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.9
Q ss_pred cchhHHHHHHH
Q 021439 49 LEPLWWVGMFT 59 (312)
Q Consensus 49 ~~p~W~~G~~l 59 (312)
|-|+|.+|.+.
T Consensus 7 RiPLWlvgtv~ 17 (40)
T 3arc_J 7 RIPLWIVATVA 17 (40)
T ss_dssp SSCHHHHHHHH
T ss_pred cccEEeeeeeh
Confidence 56999999874
No 4
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=14.50 E-value=69 Score=19.17 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=13.7
Q ss_pred CCCCCCCCccccc-ccCCCcc
Q 021439 272 DLYTPLSPKVSWY-IQGNGEL 291 (312)
Q Consensus 272 ~~~~~~~~~~~~~-~~~~~~~ 291 (312)
|-+.|.|.|++|. +++.+.+
T Consensus 4 dsMN~pSTKVsWAaVtgggsl 24 (33)
T 1uvq_C 4 DSMNLPSTKVSWAAVGGGGSL 24 (33)
T ss_pred cccCCCccccceEEecCCcee
Confidence 4455778999998 4555555
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=7.46 E-value=1.2e+03 Score=20.92 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=14.9
Q ss_pred ccchhccchhHHHHHHHH---HHHHHhcccc
Q 021439 75 PAVLVTPLGALSIIVSAV---LAHFMLNEKL 102 (312)
Q Consensus 75 p~slV~PLgal~lv~~~~---la~~~l~e~l 102 (312)
+..-+.++.+.+..+.-. ++.+.++++-
T Consensus 339 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 339 NMEGVASITSAVFMVIYLFVILSHYILIDEV 369 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 455566666666654422 3455555443
No 6
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=7.45 E-value=3e+02 Score=15.90 Aligned_cols=14 Identities=36% Similarity=0.441 Sum_probs=8.8
Q ss_pred CcccCCCCCCCCcc
Q 021439 268 PLITDLYTPLSPKV 281 (312)
Q Consensus 268 ~~~~~~~~~~~~~~ 281 (312)
..-.|+-||+||+=
T Consensus 10 ~~Y~dlKPPsSPsP 23 (26)
T 3mhp_C 10 TAYDDLKPPSSPSP 23 (26)
T ss_dssp TTBTTSSCSSCSSC
T ss_pred ccccccCCCCCCCC
Confidence 34456677777764
No 7
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=6.78 E-value=1e+03 Score=19.59 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=14.8
Q ss_pred CCcccccchhHHHHHHHHHHHHH
Q 021439 43 GGYGYLLEPLWWVGMFTMIVGEI 65 (312)
Q Consensus 43 ~~~~~l~~p~W~~G~~l~~~g~~ 65 (312)
+..++.|+|. ..|.+++.+|..
T Consensus 119 G~y~~vRHP~-Y~G~~l~~~g~~ 140 (194)
T 4a2n_B 119 GIYKNIRHPM-YAHLWLWVITQG 140 (194)
T ss_dssp STTTTBSSHH-HHHHHHHHHHHH
T ss_pred CcchhccCcc-HHHHHHHHHHHH
Confidence 4578899997 456666665543
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.18 E-value=5.6e+02 Score=15.93 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 021439 210 IETWIFAMVALTCVITQLNYLN 231 (312)
Q Consensus 210 ~~~y~li~~~v~~~~~Q~~~LN 231 (312)
-..|-++++.+.++++-.+++|
T Consensus 16 SLy~GLLlifvlavlFssyffN 37 (37)
T 3arc_L 16 SLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhhhhccC
Confidence 4456677777777777777776
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=5.63 E-value=1.9e+02 Score=21.03 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHhhheeeecccC
Q 021439 238 SASSIASELCGFITVLSGTSVLHSTR 263 (312)
Q Consensus 238 ~~~~i~~~~~G~~~i~~GV~lLs~~~ 263 (312)
...++.+.+++.++.+.|+.++-..|
T Consensus 17 ~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHheeccchhHHHHHHHHHHHHHcCc
Confidence 34667778888888888887776544
No 10
>2fp7_A Serine protease subunit NS2B; flavivirus, NS3 protease, NS2B cofactor; HET: OAR; 1.68A {West nile virus} PDB: 3e90_A*
Probab=5.35 E-value=1.8e+02 Score=19.79 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=15.0
Q ss_pred CCCCcccccccCCCcccccCCCCCCC
Q 021439 276 PLSPKVSWYIQGNGELWKKDEDGSHP 301 (312)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (312)
.+||.+..+++.++++ +..++..++
T Consensus 27 G~s~rldV~~d~~G~f-~l~~ee~~~ 51 (54)
T 2fp7_A 27 GSSERVDVRLDDDGNF-QLMNDPGAP 51 (54)
T ss_dssp CCCCEEEEEECTTSCE-EEC------
T ss_pred CCcceEEEEECCCCCE-EEccCCCCc
Confidence 5677888888888888 666665544
Done!