Query 021439
Match_columns 312
No_of_seqs 194 out of 595
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 04:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021439.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021439hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 16.7 62 0.0045 18.4 2.9 11 49-59 1-11 (34)
2 d1m56d_ f.23.8.1 (D:) Bacteria 11.2 81 0.0059 18.9 2.5 22 200-224 15-36 (42)
3 d1qled_ f.23.8.1 (D:) Bacteria 10.3 90 0.0066 18.8 2.5 18 207-224 20-37 (43)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 7.1 2.3E+02 0.016 16.1 3.2 22 210-231 16-37 (37)
5 d1q90b_ f.21.1.2 (B:) Cytochro 5.9 5.3E+02 0.038 20.0 6.3 23 49-71 111-133 (212)
6 d3cx5c2 f.21.1.2 (C:1-261) Mit 4.8 7.1E+02 0.052 19.8 6.6 23 49-71 110-132 (261)
7 d1ciia1 f.1.1.1 (A:451-624) Co 3.9 83 0.006 24.6 -0.4 42 61-102 125-167 (174)
8 d1ppje2 f.23.12.1 (E:1-69) Iro 3.7 3.7E+02 0.027 17.3 3.0 30 171-201 33-62 (69)
9 d1rh5a_ f.41.1.1 (A:) Preprote 3.5 6E+02 0.044 21.6 5.3 96 19-115 78-174 (422)
10 d3cx5e2 f.23.12.1 (E:31-86) Ir 3.1 4.2E+02 0.03 16.4 2.7 32 170-202 22-53 (56)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.73 E-value=62 Score=18.43 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.5
Q ss_pred cchhHHHHHHH
Q 021439 49 LEPLWWVGMFT 59 (312)
Q Consensus 49 ~~p~W~~G~~l 59 (312)
|-|+|.+|.+.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 45999999864
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.21 E-value=81 Score=18.90 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=13.7
Q ss_pred HhcCCcccchhHHHHHHHHHHHHHH
Q 021439 200 TLEGLNQAKCIETWIFAMVALTCVI 224 (312)
Q Consensus 200 ~~~G~~~~~~~~~y~li~~~v~~~~ 224 (312)
||+| |..|.+|..+++.+..++
T Consensus 15 TF~g---Fik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 15 TFAG---FVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHH
Confidence 4555 667777777666655544
No 3
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=10.29 E-value=90 Score=18.78 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHHHHHHH
Q 021439 207 AKCIETWIFAMVALTCVI 224 (312)
Q Consensus 207 ~~~~~~y~li~~~v~~~~ 224 (312)
|-.|.+|..+++.+..++
T Consensus 20 Fi~~~t~~~i~~i~~lif 37 (43)
T d1qled_ 20 FIKGATWVSILSIAVLVF 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777666655544
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.14 E-value=2.3e+02 Score=16.13 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 021439 210 IETWIFAMVALTCVITQLNYLN 231 (312)
Q Consensus 210 ~~~y~li~~~v~~~~~Q~~~LN 231 (312)
-..|-++++.+.++++-.+|+|
T Consensus 16 sLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677777777777777776
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.93 E-value=5.3e+02 Score=20.02 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=15.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 021439 49 LEPLWWVGMFTMIVGEIANFVAY 71 (312)
Q Consensus 49 ~~p~W~~G~~l~~~g~~~~~~Al 71 (312)
|+..|+.|++++.+-....+..|
T Consensus 111 re~~W~~Gv~l~~l~m~~aftGY 133 (212)
T d1q90b_ 111 RELTWVTGVIMAVCTVSFGVTGY 133 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceehHhHHHHHHHHHHHHhhh
Confidence 33479999988766655555444
No 6
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.79 E-value=7.1e+02 Score=19.77 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=15.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 021439 49 LEPLWWVGMFTMIVGEIANFVAY 71 (312)
Q Consensus 49 ~~p~W~~G~~l~~~g~~~~~~Al 71 (312)
|+-.|+.|+.++.+-....+..|
T Consensus 110 re~~W~~Gv~l~~l~~~~af~GY 132 (261)
T d3cx5c2 110 RVTLWNVGVIIFILTIATAFLGY 132 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHhhHHHHHHHHHHHHhhh
Confidence 44569999998776655555444
No 7
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=3.87 E-value=83 Score=24.64 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcccchhccchhHHH-HHHHHHHHHHhcccc
Q 021439 61 IVGEIANFVAYIYAPAVLVTPLGALSI-IVSAVLAHFMLNEKL 102 (312)
Q Consensus 61 ~~g~~~~~~Al~fap~slV~PLgal~l-v~~~~la~~~l~e~l 102 (312)
++|.....++..+.|..+=+|+|.++. +...+.++++-...+
T Consensus 125 ~~g~~asav~a~~fs~~~g~~lgi~g~ali~~~v~a~Idd~~v 167 (174)
T d1ciia1 125 IAGNAATALVALVFSILTGSALGIIGYGLLMAVTGALIDESLV 167 (174)
T ss_dssp BTTCBHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 444555556666667777789999998 566666666654433
No 8
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.68 E-value=3.7e+02 Score=17.34 Aligned_cols=30 Identities=7% Similarity=0.000 Sum_probs=20.4
Q ss_pred chhhhhhhHhhhhhhHHHHHHHHHHHHHHHh
Q 021439 171 NILIYIGICSVIGSLTVMSVKAIGIAIKLTL 201 (312)
Q Consensus 171 ~~l~y~~i~g~lg~~tvl~~K~~~~~l~~~~ 201 (312)
+.+-| .++|..|..++-.+|.++..+..++
T Consensus 33 k~fsY-l~~g~~~v~~ay~AK~~V~~fvssm 62 (69)
T d1ppje2 33 KGFSY-LVTATTTVGVAYAAKNVVSQFVSSM 62 (69)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceehh-hhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 46667 5566666666777899888766544
No 9
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.50 E-value=6e+02 Score=21.58 Aligned_cols=96 Identities=10% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhhhhcCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHHh
Q 021439 19 IGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFML 98 (312)
Q Consensus 19 ia~G~vlqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~fap~slV~PLgal~lv~~~~la~~~l 98 (312)
+..+.++|=....+..+ -...+.++++.+.+...+..+.+.++-......+..+....-..-+..+-.+..--+-..++
T Consensus 78 ItASIImQLL~~~~l~~-~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~iv~~L~aGt~~lmwL 156 (422)
T d1rh5a_ 78 VTAGIIMQLLVGSGIIQ-MDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYL 156 (422)
T ss_dssp HHHHHHHHHHHHHTTSC-CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHH-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccccchhh-hHHHHhh
Q 021439 99 NEKLQKMGML-GCLLCVV 115 (312)
Q Consensus 99 ~e~l~~~~~~-G~~l~~~ 115 (312)
+|.++.+++- |+-+++.
T Consensus 157 ~E~It~~GiGnGiSLiI~ 174 (422)
T d1rh5a_ 157 DEIVSKYGIGSGIGLFIA 174 (422)
T ss_dssp HHHHHHHSSSCHHHHHHH
T ss_pred HHHHhhcCcccchHHHHH
No 10
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.14 E-value=4.2e+02 Score=16.44 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred cchhhhhhhHhhhhhhHHHHHHHHHHHHHHHhc
Q 021439 170 TNILIYIGICSVIGSLTVMSVKAIGIAIKLTLE 202 (312)
Q Consensus 170 ~~~l~y~~i~g~lg~~tvl~~K~~~~~l~~~~~ 202 (312)
++.+-| .+.|..|-.++-.+|+.++.+..+++
T Consensus 22 ~r~fsY-~mvGs~g~~~a~~AKstV~~FlssMS 53 (56)
T d3cx5e2 22 GRSYAY-FMVGAMGLLSSAGAKSTVETFISSMT 53 (56)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cceEEE-EeeehhHHHHHHHHHHHHHHHHHhcc
Done!