BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021440
         (312 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain-
           Containing Protein 7
          Length = 153

 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 72/115 (62%)

Query: 99  ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDT 158
           +S  D     LA L+RPP  +M  GSFE AK+    Q+KWL++N+Q+ ++F+   LNRD 
Sbjct: 5   SSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDV 64

Query: 159 WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSW 213
           W NEAV  II  +FIFWQ Y D+ EG +   FY +   P V ++DP TGQK+  W
Sbjct: 65  WSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW 119


>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
 pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
 pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
          Length = 245

 Score = 28.1 bits (61), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 241 IIERQR-----ASSTTPQRNIKDCCSALAASMETIKDTIGVSPSDADVTSADKEATSTTQ 295
           II R +      +    Q N+++   A + +   +  T  + P D DV   D+++  T  
Sbjct: 170 IIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYV 229

Query: 296 GTAYPALPEEP 306
            + Y A+P  P
Sbjct: 230 SSLYDAMPRVP 240


>pdb|1U5K|A Chain A, Recombinational Repair Protein Reco
 pdb|1U5K|B Chain B, Recombinational Repair Protein Reco
 pdb|1W3S|A Chain A, The Crystal Structure Of Reco From Deinococcus
           Radiodurans.
 pdb|1W3S|B Chain B, The Crystal Structure Of Reco From Deinococcus
           Radiodurans.
 pdb|2V1C|C Chain C, Crystal Structure And Mutational Study Of Recor Provide
           Insight Into Its Role In Dna Repair
          Length = 244

 Score = 28.1 bits (61), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 203 DPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIERQRASSTTP 252
           DP+ GQ +CS C  + P P    +L F+  + R+      E+   S+  P
Sbjct: 165 DPLGGQLLCSKCAALPPYP--PAVLDFLRHAVRRTVRASFEQPVPSADRP 212


>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
          Length = 243

 Score = 28.1 bits (61), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 241 IIERQR-----ASSTTPQRNIKDCCSALAASMETIKDTIGVSPSDADVTSADKEATSTTQ 295
           II R +      +    Q N+++   A + +   +  T  + P D DV   D+++  T  
Sbjct: 173 IIHRHKPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYV 232

Query: 296 GTAYPALPEEP 306
            + Y A+P  P
Sbjct: 233 SSLYDAMPRVP 243


>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
           Plectin
 pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
           Plectin
          Length = 296

 Score = 27.7 bits (60), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 253 QRNIKDCCSALAASMETIKDTIGVSPSDADVTSADKEATSTTQGTAYPALPEEP 306
           Q N+++   A + +   +  T  + P D DV   D+++  T   + Y A+P  P
Sbjct: 243 QTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVP 296


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,044,200
Number of Sequences: 62578
Number of extensions: 355423
Number of successful extensions: 783
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 6
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)