Query 021440
Match_columns 312
No_of_seqs 274 out of 554
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:58:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1364 Predicted ubiquitin re 100.0 2.1E-37 4.5E-42 292.6 13.5 242 5-309 3-271 (356)
2 smart00594 UAS UAS domain. 100.0 7.3E-29 1.6E-33 206.1 12.2 115 112-226 2-121 (122)
3 cd02958 UAS UAS family; UAS is 100.0 5.3E-28 1.2E-32 197.7 13.2 114 120-233 1-114 (114)
4 cd02991 UAS_ETEA UAS family, E 99.9 4.1E-27 9E-32 194.8 13.5 114 120-233 1-116 (116)
5 cd02990 UAS_FAF1 UAS family, F 99.9 9.9E-23 2.2E-27 172.8 13.1 114 120-233 1-136 (136)
6 PF13899 Thioredoxin_7: Thiore 99.7 5.2E-16 1.1E-20 119.8 9.0 80 122-204 3-82 (82)
7 cd02951 SoxW SoxW family; SoxW 99.5 1.4E-13 3E-18 113.6 12.2 109 124-232 1-121 (125)
8 cd02955 SSP411 TRX domain, SSP 99.5 1.2E-13 2.5E-18 115.8 11.5 89 126-215 5-99 (124)
9 cd02960 AGR Anterior Gradient 99.5 2.5E-14 5.3E-19 120.8 7.2 94 119-216 6-99 (130)
10 cd02953 DsbDgamma DsbD gamma f 99.4 2.3E-12 4.9E-17 102.9 9.1 100 127-226 2-103 (104)
11 PF14555 UBA_4: UBA-like domai 99.4 9.1E-13 2E-17 90.6 4.9 41 9-50 1-41 (43)
12 PF03190 Thioredox_DsbH: Prote 99.3 5.2E-12 1.1E-16 110.3 9.2 106 125-232 26-143 (163)
13 KOG1363 Predicted regulator of 99.3 2.6E-12 5.5E-17 128.4 7.1 200 105-308 147-378 (460)
14 PF13098 Thioredoxin_2: Thiore 99.2 1.1E-11 2.5E-16 99.6 3.0 94 132-226 1-112 (112)
15 cd02959 ERp19 Endoplasmic reti 99.1 8.6E-11 1.9E-15 97.1 6.7 102 124-230 7-113 (117)
16 PRK00293 dipZ thiol:disulfide 99.1 2E-10 4.3E-15 118.3 10.9 106 122-229 460-569 (571)
17 COG2143 Thioredoxin-related pr 99.1 5.7E-10 1.2E-14 96.4 10.0 111 121-232 27-151 (182)
18 cd02950 TxlA TRX-like protein 99.0 3.2E-09 7E-14 90.5 11.4 102 130-235 14-115 (142)
19 KOG2507 Ubiquitin regulatory p 98.9 4.5E-09 9.8E-14 102.6 10.6 111 119-231 2-112 (506)
20 cd02956 ybbN ybbN protein fami 98.7 7.7E-08 1.7E-12 75.2 9.5 93 125-226 3-95 (96)
21 cd02985 TRX_CDSP32 TRX family, 98.7 1.1E-07 2.4E-12 76.3 10.4 94 124-228 5-101 (103)
22 KOG0910 Thioredoxin-like prote 98.7 7.4E-08 1.6E-12 83.0 9.7 106 119-231 44-149 (150)
23 cd02997 PDI_a_PDIR PDIa family 98.7 1.8E-07 3.9E-12 73.5 9.7 88 132-224 13-102 (104)
24 PF00085 Thioredoxin: Thioredo 98.7 2.4E-07 5.1E-12 72.3 9.9 97 122-228 6-102 (103)
25 COG1331 Highly conserved prote 98.6 7.2E-08 1.6E-12 99.6 8.5 84 126-210 33-122 (667)
26 cd02949 TRX_NTR TRX domain, no 98.6 5.4E-07 1.2E-11 71.1 10.4 96 123-226 1-96 (97)
27 PRK10996 thioredoxin 2; Provis 98.6 6.8E-07 1.5E-11 75.8 11.4 91 132-229 48-138 (139)
28 cd02993 PDI_a_APS_reductase PD 98.6 3.5E-07 7.6E-12 73.9 9.0 96 123-224 9-107 (109)
29 cd02963 TRX_DnaJ TRX domain, D 98.5 7.8E-07 1.7E-11 72.3 10.3 103 118-227 4-109 (111)
30 KOG0907 Thioredoxin [Posttrans 98.5 7.6E-07 1.6E-11 72.7 9.4 92 122-224 7-100 (106)
31 TIGR00385 dsbE periplasmic pro 98.5 4.8E-07 1E-11 79.1 8.4 93 132-231 59-172 (173)
32 cd03002 PDI_a_MPD1_like PDI fa 98.5 1.1E-06 2.3E-11 70.0 9.3 97 122-224 7-106 (109)
33 cd02986 DLP Dim1 family, Dim1- 98.5 1.5E-06 3.2E-11 72.0 9.7 96 123-230 3-111 (114)
34 cd03006 PDI_a_EFP1_N PDIa fami 98.5 1E-06 2.2E-11 72.6 8.8 97 120-224 14-111 (113)
35 COG4232 Thiol:disulfide interc 98.4 5.3E-07 1.1E-11 92.0 8.1 100 128-229 464-567 (569)
36 PHA02278 thioredoxin-like prot 98.4 2.2E-06 4.8E-11 69.4 10.1 83 134-224 12-99 (103)
37 cd02984 TRX_PICOT TRX domain, 98.4 1.7E-06 3.7E-11 67.4 9.0 92 124-225 4-95 (97)
38 cd02961 PDI_a_family Protein D 98.4 1.7E-06 3.8E-11 66.3 8.9 91 128-224 7-99 (101)
39 cd02948 TRX_NDPK TRX domain, T 98.4 3.5E-06 7.5E-11 67.3 10.8 87 132-227 13-100 (102)
40 PLN00410 U5 snRNP protein, DIM 98.4 2.6E-06 5.7E-11 73.1 10.6 102 122-235 11-125 (142)
41 cd03004 PDI_a_ERdj5_C PDIa fam 98.4 2.6E-06 5.7E-11 67.5 9.1 93 123-224 9-102 (104)
42 PRK09381 trxA thioredoxin; Pro 98.4 5.2E-06 1.1E-10 66.5 10.7 97 124-230 12-108 (109)
43 cd03000 PDI_a_TMX3 PDIa family 98.3 3.5E-06 7.6E-11 67.2 9.3 96 124-228 4-102 (104)
44 TIGR01126 pdi_dom protein disu 98.3 4E-06 8.6E-11 65.3 9.3 94 124-228 5-100 (102)
45 TIGR01068 thioredoxin thioredo 98.3 1E-05 2.2E-10 62.6 11.1 89 133-228 11-99 (101)
46 cd02954 DIM1 Dim1 family; Dim1 98.3 9E-06 1.9E-10 67.4 11.1 85 135-229 13-110 (114)
47 cd02999 PDI_a_ERp44_like PDIa 98.3 2.9E-06 6.2E-11 68.0 7.9 85 132-224 14-98 (100)
48 cd02947 TRX_family TRX family; 98.3 7.3E-06 1.6E-10 61.4 9.7 85 132-226 6-92 (93)
49 cd03003 PDI_a_ERdj5_N PDIa fam 98.3 4.4E-06 9.6E-11 66.1 8.8 90 123-223 9-98 (101)
50 cd03011 TlpA_like_ScsD_MtbDsbE 98.3 2.2E-06 4.7E-11 69.7 6.7 94 129-226 13-122 (123)
51 cd02996 PDI_a_ERp44 PDIa famil 98.3 8E-06 1.7E-10 65.4 9.9 92 122-224 8-106 (108)
52 PTZ00051 thioredoxin; Provisio 98.2 1.2E-05 2.7E-10 62.7 9.8 84 127-221 9-94 (98)
53 cd02998 PDI_a_ERp38 PDIa famil 98.2 5.5E-06 1.2E-10 64.8 7.8 89 131-224 13-103 (105)
54 cd02994 PDI_a_TMX PDIa family, 98.2 1E-05 2.2E-10 63.8 9.3 91 122-226 8-99 (101)
55 cd02995 PDI_a_PDI_a'_C PDIa fa 98.2 7.8E-06 1.7E-10 64.0 8.4 85 132-224 14-102 (104)
56 PRK15412 thiol:disulfide inter 98.2 1.4E-05 3.1E-10 70.7 10.6 92 134-232 66-178 (185)
57 cd03005 PDI_a_ERp46 PDIa famil 98.2 1.7E-05 3.7E-10 62.1 9.8 89 123-223 8-99 (102)
58 TIGR02740 TraF-like TraF-like 98.2 2.9E-05 6.4E-10 73.2 12.6 94 132-231 162-265 (271)
59 cd02987 Phd_like_Phd Phosducin 98.1 3.4E-05 7.5E-10 68.2 11.4 98 123-232 71-173 (175)
60 TIGR02738 TrbB type-F conjugat 98.1 1.7E-05 3.6E-10 68.8 8.7 93 131-229 45-152 (153)
61 cd02957 Phd_like Phosducin (Ph 98.1 1.9E-05 4.1E-10 64.2 8.4 82 123-216 12-95 (113)
62 cd03001 PDI_a_P5 PDIa family, 98.1 4.5E-05 9.8E-10 59.7 10.0 86 133-224 15-100 (103)
63 PRK03147 thiol-disulfide oxido 98.0 4.6E-05 1E-09 65.5 10.5 92 134-228 59-170 (173)
64 cd03010 TlpA_like_DsbE TlpA-li 98.0 2.6E-05 5.7E-10 63.9 8.2 85 130-221 19-125 (127)
65 PTZ00443 Thioredoxin domain-co 98.0 6.4E-05 1.4E-09 69.2 11.1 103 121-230 36-139 (224)
66 cd02989 Phd_like_TxnDC9 Phosdu 98.0 6.6E-05 1.4E-09 61.5 9.8 77 130-216 16-94 (113)
67 cd03065 PDI_b_Calsequestrin_N 98.0 7.3E-05 1.6E-09 62.4 10.1 98 123-230 17-119 (120)
68 cd02975 PfPDO_like_N Pyrococcu 97.9 0.00012 2.6E-09 59.9 10.5 92 130-231 16-111 (113)
69 TIGR01295 PedC_BrcD bacterioci 97.9 0.00019 4.1E-09 59.8 11.1 94 124-230 12-120 (122)
70 cd02966 TlpA_like_family TlpA- 97.9 3.7E-05 8E-10 59.7 6.3 80 129-215 12-116 (116)
71 cd03009 TryX_like_TryX_NRX Try 97.9 8.1E-05 1.8E-09 61.4 8.5 74 132-212 14-115 (131)
72 TIGR01130 ER_PDI_fam protein d 97.8 9.6E-05 2.1E-09 72.8 9.5 98 123-231 9-110 (462)
73 PTZ00102 disulphide isomerase; 97.8 0.0001 2.2E-09 73.5 9.3 98 123-232 40-140 (477)
74 cd02982 PDI_b'_family Protein 97.8 0.00011 2.4E-09 57.7 7.5 88 136-228 12-101 (103)
75 TIGR00424 APS_reduc 5'-adenyly 97.8 0.00015 3.3E-09 73.2 10.3 114 108-226 343-459 (463)
76 cd02962 TMX2 TMX2 family; comp 97.7 0.0002 4.4E-09 62.1 9.4 81 123-215 36-126 (152)
77 cd02992 PDI_a_QSOX PDIa family 97.7 0.00013 2.9E-09 59.6 7.8 78 122-205 8-88 (114)
78 cd02952 TRP14_like Human TRX-r 97.6 0.0003 6.5E-09 58.6 8.6 68 135-210 20-103 (119)
79 PRK14018 trifunctional thiored 97.6 0.00026 5.5E-09 72.6 9.8 90 135-227 55-170 (521)
80 cd02965 HyaE HyaE family; HyaE 97.6 0.0012 2.5E-08 54.5 11.4 102 106-223 3-109 (111)
81 PTZ00102 disulphide isomerase; 97.6 0.00018 4E-09 71.6 7.5 104 120-232 362-467 (477)
82 cd02964 TryX_like_family Trypa 97.5 0.00045 9.7E-09 57.4 8.2 79 127-212 8-115 (132)
83 cd03008 TryX_like_RdCVF Trypar 97.5 0.00027 5.8E-09 61.0 6.8 80 132-212 21-128 (146)
84 PRK13728 conjugal transfer pro 97.5 0.00078 1.7E-08 60.2 9.9 86 140-232 73-173 (181)
85 cd02988 Phd_like_VIAF Phosduci 97.5 0.0017 3.6E-08 58.4 11.5 81 122-216 89-171 (192)
86 PLN02309 5'-adenylylsulfate re 97.4 0.00089 1.9E-08 67.7 10.2 113 110-228 339-455 (457)
87 smart00804 TAP_C C-terminal do 97.4 0.00033 7.1E-09 52.1 5.3 46 3-49 7-52 (63)
88 PLN02919 haloacid dehalogenase 97.4 0.00084 1.8E-08 74.2 10.7 93 135-234 419-540 (1057)
89 cd02969 PRX_like1 Peroxiredoxi 97.4 0.0019 4.1E-08 55.9 10.2 99 135-236 24-158 (171)
90 PLN02399 phospholipid hydroper 97.3 0.00073 1.6E-08 62.7 7.8 99 132-231 95-235 (236)
91 TIGR02187 GlrX_arch Glutaredox 97.3 0.0015 3.2E-08 59.2 9.6 90 135-232 19-113 (215)
92 PRK13703 conjugal pilus assemb 97.3 0.002 4.4E-08 60.2 10.6 93 136-234 143-245 (248)
93 TIGR02739 TraF type-F conjugat 97.3 0.0029 6.3E-08 59.4 11.6 92 136-233 150-251 (256)
94 PF13905 Thioredoxin_8: Thiore 97.3 0.0014 3E-08 50.8 7.8 69 136-208 1-94 (95)
95 PTZ00062 glutaredoxin; Provisi 97.3 0.0028 6E-08 57.6 10.6 86 126-230 7-94 (204)
96 PTZ00056 glutathione peroxidas 97.2 0.0038 8.3E-08 56.2 10.9 93 133-232 36-180 (199)
97 KOG0908 Thioredoxin-like prote 97.2 0.0021 4.5E-08 60.0 9.0 95 130-235 15-111 (288)
98 cd03017 PRX_BCP Peroxiredoxin 97.1 0.0035 7.6E-08 51.8 9.1 90 134-226 21-139 (140)
99 PHA02125 thioredoxin-like prot 97.1 0.0024 5.2E-08 48.2 7.3 71 140-226 2-73 (75)
100 cd00340 GSH_Peroxidase Glutath 97.1 0.00082 1.8E-08 57.3 5.3 26 198-224 125-150 (152)
101 PF13728 TraF: F plasmid trans 97.1 0.0045 9.7E-08 56.6 10.3 86 135-226 119-214 (215)
102 TIGR02661 MauD methylamine deh 97.1 0.0048 1E-07 54.8 10.1 88 134-232 72-180 (189)
103 TIGR00411 redox_disulf_1 small 97.1 0.0046 1E-07 46.3 8.5 75 141-229 4-81 (82)
104 PLN02412 probable glutathione 97.0 0.0031 6.6E-08 55.0 8.2 95 135-232 28-166 (167)
105 PF03943 TAP_C: TAP C-terminal 97.0 0.0005 1.1E-08 49.0 2.4 41 9-50 1-41 (51)
106 TIGR01130 ER_PDI_fam protein d 97.0 0.0031 6.7E-08 62.1 8.6 98 121-234 352-454 (462)
107 cd02967 mauD Methylamine utili 97.0 0.0045 9.8E-08 49.3 8.0 72 135-210 20-109 (114)
108 cd03007 PDI_a_ERp29_N PDIa fam 96.9 0.0047 1E-07 51.3 7.9 92 122-226 8-112 (116)
109 cd03012 TlpA_like_DipZ_like Tl 96.8 0.0048 1E-07 50.7 7.5 84 130-216 17-125 (126)
110 COG3118 Thioredoxin domain-con 96.6 0.0082 1.8E-07 57.3 8.2 100 123-230 31-130 (304)
111 cd03015 PRX_Typ2cys Peroxiredo 96.6 0.0099 2.1E-07 51.7 8.2 94 132-228 25-155 (173)
112 PRK09437 bcp thioredoxin-depen 96.6 0.024 5.1E-07 48.0 10.1 94 134-231 28-153 (154)
113 KOG1364 Predicted ubiquitin re 96.5 0.00011 2.4E-09 70.8 -5.2 106 131-236 6-121 (356)
114 TIGR02540 gpx7 putative glutat 96.5 0.032 6.9E-07 47.5 10.3 98 130-229 16-152 (153)
115 TIGR03137 AhpC peroxiredoxin. 96.5 0.013 2.8E-07 52.0 8.1 97 134-233 29-161 (187)
116 TIGR00412 redox_disulf_2 small 96.5 0.015 3.2E-07 44.1 7.4 69 141-226 3-75 (76)
117 PF00627 UBA: UBA/TS-N domain; 96.5 0.0062 1.3E-07 40.1 4.5 35 8-44 2-36 (37)
118 PF08534 Redoxin: Redoxin; In 96.4 0.0099 2.1E-07 49.6 6.8 81 134-218 26-136 (146)
119 KOG2244 Highly conserved prote 96.4 0.005 1.1E-07 62.9 5.6 80 126-205 102-187 (786)
120 cd00194 UBA Ubiquitin Associat 96.4 0.0084 1.8E-07 39.3 4.9 36 9-46 2-37 (38)
121 KOG2501 Thioredoxin, nucleored 96.4 0.022 4.8E-07 49.8 8.6 83 126-212 23-131 (157)
122 smart00165 UBA Ubiquitin assoc 96.3 0.0088 1.9E-07 39.1 4.6 36 9-46 2-37 (37)
123 PRK10382 alkyl hydroperoxide r 96.2 0.052 1.1E-06 48.5 10.6 110 115-228 9-154 (187)
124 PRK15000 peroxidase; Provision 96.2 0.03 6.4E-07 50.5 8.7 91 135-228 33-160 (200)
125 TIGR02187 GlrX_arch Glutaredox 96.1 0.044 9.5E-07 49.5 9.9 87 129-228 125-214 (215)
126 PRK11509 hydrogenase-1 operon 95.9 0.056 1.2E-06 46.0 8.8 59 171-233 69-127 (132)
127 PRK00522 tpx lipid hydroperoxi 95.8 0.057 1.2E-06 46.9 8.6 74 134-214 42-148 (167)
128 PTZ00253 tryparedoxin peroxida 95.8 0.055 1.2E-06 48.4 8.7 90 134-226 34-160 (199)
129 PF00578 AhpC-TSA: AhpC/TSA fa 95.7 0.033 7.2E-07 44.7 6.4 74 135-211 24-123 (124)
130 KOG0191 Thioredoxin/protein di 95.4 0.077 1.7E-06 52.1 8.8 97 130-233 41-137 (383)
131 PTZ00137 2-Cys peroxiredoxin; 95.4 0.12 2.5E-06 48.8 9.6 92 135-229 97-224 (261)
132 PRK13190 putative peroxiredoxi 95.2 0.17 3.7E-06 45.5 9.9 96 132-230 23-154 (202)
133 KOG0190 Protein disulfide isom 94.9 0.068 1.5E-06 54.6 7.0 95 122-227 32-129 (493)
134 PTZ00256 glutathione peroxidas 94.8 0.28 6E-06 43.2 9.9 38 193-231 142-182 (183)
135 TIGR01626 ytfJ_HI0045 conserve 94.8 0.33 7.2E-06 43.5 10.4 90 132-230 55-179 (184)
136 cd02971 PRX_family Peroxiredox 94.7 0.18 3.9E-06 41.3 8.0 80 135-217 21-130 (140)
137 KOG0912 Thiol-disulfide isomer 94.7 0.055 1.2E-06 52.1 5.3 93 136-231 13-107 (375)
138 cd03026 AhpF_NTD_C TRX-GRX-lik 94.4 0.34 7.4E-06 38.0 8.4 83 130-224 5-88 (89)
139 cd02968 SCO SCO (an acronym fo 94.0 0.11 2.5E-06 42.7 5.4 22 134-155 20-42 (142)
140 PRK13189 peroxiredoxin; Provis 93.8 0.29 6.3E-06 44.8 8.1 92 135-229 34-162 (222)
141 cd01659 TRX_superfamily Thiore 93.6 0.11 2.4E-06 34.5 3.8 62 140-205 1-63 (69)
142 cd03014 PRX_Atyp2cys Peroxired 93.6 0.39 8.4E-06 39.8 7.8 75 135-216 25-129 (143)
143 PF13848 Thioredoxin_6: Thiore 93.5 0.38 8.2E-06 41.1 7.9 82 137-223 96-179 (184)
144 PRK13191 putative peroxiredoxi 93.4 0.44 9.6E-06 43.4 8.6 91 135-228 32-159 (215)
145 cd03018 PRX_AhpE_like Peroxire 93.3 0.64 1.4E-05 38.6 8.7 82 132-216 23-133 (149)
146 cd03016 PRX_1cys Peroxiredoxin 93.1 0.56 1.2E-05 42.1 8.6 88 137-227 26-151 (203)
147 PRK13599 putative peroxiredoxi 92.9 0.48 1E-05 43.2 7.9 91 135-228 27-154 (215)
148 cd02970 PRX_like2 Peroxiredoxi 92.8 0.82 1.8E-05 37.6 8.7 48 136-185 24-71 (149)
149 PF02845 CUE: CUE domain; Int 92.6 0.31 6.7E-06 32.8 4.8 40 9-48 2-41 (42)
150 PRK10606 btuE putative glutath 92.3 1.3 2.8E-05 39.5 9.7 71 130-209 19-103 (183)
151 smart00546 CUE Domain that may 92.2 0.45 9.7E-06 32.1 5.2 40 9-48 3-42 (43)
152 PF13192 Thioredoxin_3: Thiore 91.9 0.71 1.5E-05 34.7 6.6 69 144-226 6-75 (76)
153 cd02973 TRX_GRX_like Thioredox 91.5 0.8 1.7E-05 32.9 6.3 56 140-201 3-58 (67)
154 KOG4351 Uncharacterized conser 90.2 0.046 9.9E-07 50.4 -1.7 46 5-50 20-67 (244)
155 KOG2086 Protein tyrosine phosp 90.1 0.11 2.3E-06 51.3 0.6 41 8-49 4-44 (380)
156 COG0526 TrxA Thiol-disulfide i 89.5 1.6 3.4E-05 32.5 6.7 61 136-203 32-97 (127)
157 TIGR00264 alpha-NAC-related pr 89.5 0.53 1.1E-05 39.2 4.1 34 9-43 79-112 (116)
158 PRK11657 dsbG disulfide isomer 89.3 1.4 3.1E-05 41.1 7.4 93 127-227 108-249 (251)
159 PF06110 DUF953: Eukaryotic pr 89.2 1 2.2E-05 37.6 5.7 78 125-210 8-102 (119)
160 PRK06369 nac nascent polypepti 88.7 0.65 1.4E-05 38.6 4.1 36 8-44 76-111 (115)
161 cd02983 P5_C P5 family, C-term 88.6 2.2 4.8E-05 35.8 7.4 94 136-233 20-118 (130)
162 PF02114 Phosducin: Phosducin; 87.9 2.6 5.6E-05 39.8 8.2 102 124-235 135-239 (265)
163 PRK10877 protein disulfide iso 87.6 1.6 3.4E-05 40.3 6.4 88 129-228 100-229 (232)
164 PF14595 Thioredoxin_9: Thiore 87.3 1.2 2.5E-05 37.5 5.0 79 130-216 35-117 (129)
165 TIGR02196 GlrX_YruB Glutaredox 86.4 4.5 9.9E-05 28.6 7.2 66 141-224 3-71 (74)
166 KOG0191 Thioredoxin/protein di 86.3 1.6 3.4E-05 43.0 6.0 98 129-233 155-255 (383)
167 COG1225 Bcp Peroxiredoxin [Pos 84.3 11 0.00023 33.1 9.6 98 129-229 23-155 (157)
168 PF02809 UIM: Ubiquitin intera 83.4 0.91 2E-05 25.5 1.7 15 255-269 3-17 (18)
169 smart00726 UIM Ubiquitin-inter 83.1 1.1 2.4E-05 27.5 2.1 19 255-273 2-20 (26)
170 KOG0190 Protein disulfide isom 82.7 2.5 5.4E-05 43.4 5.7 103 120-236 371-475 (493)
171 KOG4277 Uncharacterized conser 81.5 3.8 8.2E-05 39.8 6.1 98 121-225 29-127 (468)
172 TIGR02200 GlrX_actino Glutared 81.0 10 0.00022 27.4 7.2 70 141-227 3-76 (77)
173 COG1308 EGD2 Transcription fac 80.1 2.8 6.2E-05 35.1 4.2 35 9-44 85-119 (122)
174 PF00462 Glutaredoxin: Glutare 79.8 5.9 0.00013 27.9 5.4 50 142-201 3-55 (60)
175 PF03413 PepSY: Peptidase prop 79.6 6.9 0.00015 27.5 5.7 58 123-213 2-64 (64)
176 TIGR03143 AhpF_homolog putativ 78.5 11 0.00023 39.1 8.9 86 127-226 466-554 (555)
177 TIGR02180 GRX_euk Glutaredoxin 76.0 8.2 0.00018 28.4 5.5 57 141-203 2-61 (84)
178 cd03072 PDI_b'_ERp44 PDIb' fam 75.7 8 0.00017 31.4 5.7 58 172-231 50-109 (111)
179 KOG3414 Component of the U4/U6 75.1 27 0.0006 29.8 8.7 96 132-233 19-123 (142)
180 PF02966 DIM1: Mitosis protein 70.5 43 0.00094 28.6 9.0 93 133-232 17-119 (133)
181 PF11547 E3_UbLigase_EDD: E3 u 70.5 15 0.00033 26.0 5.1 45 5-49 6-50 (53)
182 cd03013 PRX5_like Peroxiredoxi 70.4 12 0.00026 32.0 5.8 67 135-204 28-98 (155)
183 CHL00098 tsf elongation factor 70.3 6.2 0.00013 35.9 4.1 39 10-49 3-41 (200)
184 cd03419 GRX_GRXh_1_2_like Glut 69.9 17 0.00036 26.7 5.9 55 141-203 3-60 (82)
185 TIGR00116 tsf translation elon 69.1 6.4 0.00014 37.8 4.1 40 9-49 5-44 (290)
186 PRK12332 tsf elongation factor 68.0 7.4 0.00016 35.3 4.1 40 9-49 5-44 (198)
187 PRK09377 tsf elongation factor 66.9 8.1 0.00018 37.1 4.4 40 9-49 6-45 (290)
188 KOG1731 FAD-dependent sulfhydr 66.0 5.7 0.00012 41.4 3.3 102 122-232 46-155 (606)
189 PRK15317 alkyl hydroperoxide r 65.9 39 0.00085 34.5 9.5 91 126-228 105-196 (517)
190 PF03765 CRAL_TRIO_N: CRAL/TRI 65.3 11 0.00023 26.4 3.8 27 20-46 27-53 (55)
191 KOG2756 Predicted Mg2+-depende 64.0 4.5 9.8E-05 38.7 2.0 39 11-49 27-65 (349)
192 cd04598 CBS_pair_GGDEF_assoc T 62.1 31 0.00068 26.5 6.3 98 120-224 7-118 (119)
193 COG0264 Tsf Translation elonga 62.1 13 0.00028 35.8 4.7 40 9-49 6-45 (296)
194 cd03028 GRX_PICOT_like Glutare 61.7 29 0.00062 26.8 5.9 55 137-203 8-70 (90)
195 KOG3077 Uncharacterized conser 60.5 4.7 0.0001 38.1 1.5 42 4-46 4-46 (260)
196 cd02976 NrdH NrdH-redoxin (Nrd 59.9 35 0.00075 23.8 5.8 52 140-201 2-56 (73)
197 KOG1071 Mitochondrial translat 58.5 13 0.00028 36.2 4.1 40 7-47 45-84 (340)
198 TIGR02183 GRXA Glutaredoxin, G 57.1 37 0.00081 25.9 5.8 50 143-203 5-64 (86)
199 cd04599 CBS_pair_GGDEF_assoc2 54.5 52 0.0011 24.5 6.3 97 116-223 3-103 (105)
200 TIGR03140 AhpF alkyl hydropero 54.4 81 0.0018 32.2 9.4 92 126-229 106-198 (515)
201 cd03418 GRX_GRXb_1_3_like Glut 53.9 44 0.00095 24.0 5.5 50 143-203 5-58 (75)
202 COG0386 BtuE Glutathione perox 52.6 58 0.0013 28.7 6.7 24 149-172 63-87 (162)
203 TIGR00365 monothiol glutaredox 51.5 84 0.0018 24.7 7.2 57 136-203 11-74 (97)
204 PF05768 DUF836: Glutaredoxin- 51.0 43 0.00093 25.3 5.2 79 140-227 2-81 (81)
205 PF00681 Plectin: Plectin repe 50.2 21 0.00045 24.3 3.0 23 200-222 12-38 (45)
206 cd02066 GRX_family Glutaredoxi 50.1 67 0.0015 22.1 5.9 48 144-201 6-56 (72)
207 PRK11200 grxA glutaredoxin 1; 50.0 58 0.0013 24.5 5.8 69 140-228 3-81 (85)
208 TIGR02181 GRX_bact Glutaredoxi 49.8 42 0.00091 24.6 4.9 49 144-203 5-56 (79)
209 cd03073 PDI_b'_ERp72_ERp57 PDI 49.0 55 0.0012 26.6 5.8 61 163-227 42-108 (111)
210 cd03027 GRX_DEP Glutaredoxin ( 48.7 63 0.0014 23.4 5.7 49 144-203 7-58 (73)
211 COG3531 Predicted protein-disu 48.4 43 0.00093 30.7 5.5 47 183-231 162-210 (212)
212 PRK10329 glutaredoxin-like pro 48.1 1.2E+02 0.0026 23.0 7.7 65 144-226 7-73 (81)
213 PF06972 DUF1296: Protein of u 47.8 61 0.0013 23.9 5.2 43 7-49 4-46 (60)
214 cd03020 DsbA_DsbC_DsbG DsbA fa 47.5 22 0.00048 31.3 3.6 36 184-225 161-196 (197)
215 KOG3171 Conserved phosducin-li 46.5 40 0.00087 31.4 5.0 114 113-236 133-253 (273)
216 PF02630 SCO1-SenC: SCO1/SenC; 45.7 89 0.0019 27.1 7.1 18 197-215 156-173 (174)
217 PF00571 CBS: CBS domain CBS d 45.3 41 0.00089 22.7 4.0 56 164-227 1-56 (57)
218 COG2103 Predicted sugar phosph 45.2 34 0.00073 32.8 4.5 39 9-48 234-272 (298)
219 TIGR02189 GlrX-like_plant Glut 45.0 35 0.00077 27.0 4.0 52 139-203 10-68 (99)
220 cd04595 CBS_pair_DHH_polyA_Pol 44.3 97 0.0021 23.3 6.4 96 116-223 4-108 (110)
221 cd04606 CBS_pair_Mg_transporte 42.8 1E+02 0.0022 23.3 6.4 95 122-225 5-108 (109)
222 KOG0911 Glutaredoxin-related p 42.6 13 0.00029 34.3 1.4 98 116-228 3-100 (227)
223 TIGR02190 GlrX-dom Glutaredoxi 41.8 85 0.0018 23.3 5.5 58 132-203 4-64 (79)
224 PF11009 DUF2847: Protein of u 41.7 1.9E+02 0.0042 23.6 9.0 81 134-222 17-104 (105)
225 KOG1752 Glutaredoxin and relat 41.7 24 0.00051 28.7 2.6 51 143-201 19-73 (104)
226 PRK05441 murQ N-acetylmuramic 41.3 33 0.00071 32.8 3.9 38 10-48 237-274 (299)
227 cd04624 CBS_pair_11 The CBS do 40.1 1.3E+02 0.0029 22.6 6.7 95 120-223 7-110 (112)
228 PF01873 eIF-5_eIF-2B: Domain 39.9 9.1 0.0002 32.2 -0.1 80 112-236 16-96 (125)
229 PRK13669 hypothetical protein; 39.2 54 0.0012 25.5 4.1 19 217-235 59-77 (78)
230 PF07319 DnaI_N: Primosomal pr 38.3 16 0.00035 28.9 1.1 22 150-171 20-41 (94)
231 cd03029 GRX_hybridPRX5 Glutare 37.6 1.2E+02 0.0026 21.7 5.7 49 143-203 6-57 (72)
232 PTZ00062 glutaredoxin; Provisi 37.4 1.5E+02 0.0032 26.9 7.3 81 105-201 86-174 (204)
233 cd04640 CBS_pair_27 The CBS do 37.2 1.1E+02 0.0024 24.0 5.9 100 121-224 8-125 (126)
234 TIGR00274 N-acetylmuramic acid 37.1 43 0.00092 32.0 3.9 38 10-48 232-269 (291)
235 smart00250 PLEC Plectin repeat 37.1 15 0.00032 24.1 0.6 17 196-212 8-24 (38)
236 cd03023 DsbA_Com1_like DsbA fa 35.1 90 0.002 25.2 5.2 39 134-178 3-45 (154)
237 cd04601 CBS_pair_IMPDH This cd 34.5 1.9E+02 0.0042 21.4 7.1 98 116-223 4-108 (110)
238 PHA03050 glutaredoxin; Provisi 34.4 1.1E+02 0.0024 24.6 5.5 55 137-203 13-76 (108)
239 COG1999 Uncharacterized protei 33.2 1.4E+02 0.0031 26.9 6.5 37 195-232 170-206 (207)
240 PF03474 DMA: DMRTA motif; In 33.1 71 0.0015 21.6 3.4 26 20-45 13-38 (39)
241 PF01011 PQQ: PQQ enzyme repea 33.0 52 0.0011 21.2 2.7 17 198-214 11-27 (38)
242 PRK12570 N-acetylmuramic acid- 32.6 53 0.0011 31.4 3.8 38 10-48 233-270 (296)
243 PF03646 FlaG: FlaG protein; 32.1 77 0.0017 25.2 4.2 30 196-229 67-96 (107)
244 COG1453 Predicted oxidoreducta 31.6 2.3E+02 0.0049 28.5 8.0 70 125-210 132-211 (391)
245 PRK10638 glutaredoxin 3; Provi 31.5 1.5E+02 0.0032 22.1 5.5 49 144-203 8-59 (83)
246 PF07293 DUF1450: Protein of u 30.3 88 0.0019 24.2 4.0 30 199-235 48-77 (78)
247 PRK10824 glutaredoxin-4; Provi 30.1 2.9E+02 0.0062 22.8 7.3 66 127-201 6-76 (115)
248 cd04615 CBS_pair_2 The CBS dom 30.0 1.8E+02 0.004 21.8 5.9 101 115-223 2-111 (113)
249 TIGR00311 aIF-2beta translatio 29.9 43 0.00092 28.5 2.4 78 112-236 22-100 (133)
250 smart00653 eIF2B_5 domain pres 29.8 46 0.001 27.3 2.5 66 137-236 18-83 (110)
251 cd04800 CBS_pair_CAP-ED_DUF294 29.4 1.7E+02 0.0038 21.9 5.7 92 121-223 8-109 (111)
252 cd04629 CBS_pair_16 The CBS do 29.1 1.6E+02 0.0034 22.2 5.4 54 161-223 59-112 (114)
253 KOG2456 Aldehyde dehydrogenase 29.0 82 0.0018 32.0 4.5 47 110-169 334-380 (477)
254 KOG2792 Putative cytochrome C 28.9 1.4E+02 0.0031 28.5 5.8 94 135-233 138-278 (280)
255 PF02401 LYTB: LytB protein; 28.9 1.5E+02 0.0034 28.2 6.2 104 123-232 168-280 (281)
256 PF13778 DUF4174: Domain of un 27.8 2.8E+02 0.006 22.7 6.8 42 184-226 66-108 (118)
257 KOG0944 Ubiquitin-specific pro 26.6 74 0.0016 34.1 3.8 41 8-50 635-675 (763)
258 PRK08452 flagellar protein Fla 26.2 1.2E+02 0.0026 25.5 4.4 32 196-231 83-114 (124)
259 PRK07738 flagellar protein Fla 25.7 1.3E+02 0.0028 25.1 4.4 33 195-231 75-107 (117)
260 TIGR02194 GlrX_NrdH Glutaredox 25.7 1.8E+02 0.0039 21.0 4.9 63 144-223 5-69 (72)
261 KOG2603 Oligosaccharyltransfer 25.3 1.1E+02 0.0024 29.9 4.5 55 178-234 109-166 (331)
262 PF07912 ERp29_N: ERp29, N-ter 24.7 2.1E+02 0.0046 24.2 5.5 58 171-233 54-118 (126)
263 PF04221 RelB: RelB antitoxin; 24.2 96 0.0021 23.8 3.3 25 24-48 13-37 (83)
264 cd04582 CBS_pair_ABC_OpuCA_ass 24.2 3E+02 0.0065 20.3 6.6 92 122-223 9-104 (106)
265 PRK03988 translation initiatio 23.8 71 0.0015 27.3 2.6 75 115-236 31-105 (138)
266 PF13848 Thioredoxin_6: Thiore 23.7 4.3E+02 0.0093 22.0 8.1 62 163-235 14-76 (184)
267 PF13462 Thioredoxin_4: Thiore 22.8 1.9E+02 0.0042 23.6 5.2 38 184-228 125-162 (162)
268 TIGR03143 AhpF_homolog putativ 22.5 7.5E+02 0.016 25.5 10.4 50 183-233 407-457 (555)
269 PRK01045 ispH 4-hydroxy-3-meth 21.4 3.9E+02 0.0085 25.8 7.5 106 122-233 168-282 (298)
270 cd04596 CBS_pair_DRTGG_assoc T 21.2 2.8E+02 0.0061 20.7 5.5 92 122-223 10-106 (108)
271 cd04605 CBS_pair_MET2_assoc Th 21.1 2.7E+02 0.0059 20.7 5.3 100 113-222 1-107 (110)
272 TIGR00400 mgtE Mg2+ transporte 21.0 3.8E+02 0.0082 27.0 7.7 100 122-229 147-254 (449)
273 PF07449 HyaE: Hydrogenase-1 e 21.0 3.3E+02 0.0073 22.2 6.0 51 164-218 53-103 (107)
274 KOG3425 Uncharacterized conser 20.8 92 0.002 26.4 2.6 54 123-183 13-77 (128)
275 cd03023 DsbA_Com1_like DsbA fa 20.3 2.2E+02 0.0048 22.8 4.9 35 185-226 119-153 (154)
276 PF13462 Thioredoxin_4: Thiore 20.0 79 0.0017 26.0 2.2 43 133-177 9-54 (162)
No 1
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-37 Score=292.60 Aligned_cols=242 Identities=29% Similarity=0.492 Sum_probs=188.3
Q ss_pred chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCCCcccccCCCCCCCc
Q 021440 5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYE 84 (312)
Q Consensus 5 s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~~~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~ 84 (312)
..++.++|.+|++||..++.+.|++||++++|||+.||+|||++++.....+++ +.+
T Consensus 3 ~~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~~---~~a-------------------- 59 (356)
T KOG1364|consen 3 TGAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSSS---SAA-------------------- 59 (356)
T ss_pred cchHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCCc---ccC--------------------
Confidence 346789999999995559999999999999999999999999987643321110 000
Q ss_pred ccCC-CCccccccc--------------------CCCCCcchhHHHhhhcCCCccccccccHHHHHHHHHHcCCeEEEEe
Q 021440 85 VCVP-PHAKDLFYN--------------------DASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNL 143 (312)
Q Consensus 85 VRaP-p~~~etL~~--------------------~~~~~~~~~~~La~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVni 143 (312)
-.| +.++++|++ ..+...+.+.+|+.|||||++|||+|+++.|+..|.++.+||||
T Consensus 60 -~sp~~~~re~l~~~~~~~d~~~~s~~~p~~~~~~~s~~~~~~srL~slfrpp~~i~~~gsld~ak~~a~sk~~wllV-- 136 (356)
T KOG1364|consen 60 -PSPIEPQREVLFDPLGIMDQSTSSILDPSENQDDESEHASSQSRLASLFRPPTDILSHGSLDAAKSTASSKQRWLLV-- 136 (356)
T ss_pred -CCcccccceeeeccccccccCcccccCcccccchhhhhccccchhhhhcCCCcchhhcCChhhhhhcccccceEEEE--
Confidence 012 223333322 01123456889999999999999999999999999999999999
Q ss_pred ecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 144 QSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 144 q~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
+.|+.||++|..+|++.+.|||+||||+||++|++|.|.+.|+.|+
T Consensus 137 ----------------------------------~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl 182 (356)
T KOG1364|consen 137 ----------------------------------LDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFL 182 (356)
T ss_pred ----------------------------------eeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHH
Confidence 4588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcC-CccccccC-CCCCCCCC--hHHHHHHHHHHhhHhhcCCCCCCCCCC-CCCCcccccccccc-Cc
Q 021440 224 EMLLPFMDRSPRKCA-TIIIERQR-ASSTTPQR--NIKDCCSALAASMETIKDTIGVSPSDA-DVTSADKEATSTTQ-GT 297 (312)
Q Consensus 224 ~~L~~fl~~~~~~~~-~~~~k~~~-~~~~~~~~--~~eql~~Ai~~Sl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~ 297 (312)
..|++|++.+++++. +....+++ +...+..+ +.+||++||++|+.+++..+. .++ ...+.++.|+|... .+
T Consensus 183 ~~l~~Fi~~~~~d~vas~t~n~~~p~~e~~~~ss~e~~~~elai~~sv~~~~~~~e---~e~~~~s~~ee~e~~~e~~~~ 259 (356)
T KOG1364|consen 183 SDLNEFIDSCPHDEVASLTRNRKRPKTEPTCLSSEEDMQMELAIKNSVVNPSSGTE---FEGQGASDEEELETVLEEDLF 259 (356)
T ss_pred HHHHHHHhcCCccccccccccccCCCCCccccccccchhhhcccccccccCCCccc---ccCCCCcccchhhcccccccc
Confidence 999999999999943 33333321 22223333 457889999999998775533 233 45555666999988 99
Q ss_pred cCCCCCCCCCCC
Q 021440 298 AYPALPEEPNVD 309 (312)
Q Consensus 298 ~~~~~~~~~~~~ 309 (312)
.||++.+|||++
T Consensus 260 ~~~~a~~ep~~~ 271 (356)
T KOG1364|consen 260 VFPVATVEPKGD 271 (356)
T ss_pred ccceeeecCCCC
Confidence 999999999994
No 2
>smart00594 UAS UAS domain.
Probab=99.96 E-value=7.3e-29 Score=206.07 Aligned_cols=115 Identities=44% Similarity=0.713 Sum_probs=108.9
Q ss_pred hcCCCc-cccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHh
Q 021440 112 LYRPPF-HVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSF 190 (312)
Q Consensus 112 lfrPP~-~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~ 190 (312)
+|.||+ ++||+|+|++|++.|++++|++|||||++||.+|+.|||+||+|++|+++|++|||+|++++.++||.++++.
T Consensus 2 ~~~~~~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~ 81 (122)
T smart00594 2 LFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQF 81 (122)
T ss_pred CCCCCCCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHh
Confidence 688888 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEeCCCCee----EEEecCCCChHHHHHHH
Q 021440 191 YNMDSIPAVLVIDPITGQK----ICSWCGMINPQPLGEML 226 (312)
Q Consensus 191 Y~~~~~P~i~IIdprTGe~----v~~~~G~~~~~~fl~~L 226 (312)
|++..||+++||+|++|+. +.+.+|.+++++|++.|
T Consensus 82 ~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 82 YKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9999999999999998764 44478999999999877
No 3
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.95 E-value=5.3e-28 Score=197.69 Aligned_cols=114 Identities=46% Similarity=0.805 Sum_probs=110.6
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i 199 (312)
||.|+|++|++.||+++|||||+||++||..|+.|+|+||+|++|+++|++|||+|.+++++++|.+++..|++..+|++
T Consensus 1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI 80 (114)
T ss_pred CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
+||||++|+.+.++.|.+++++|+..|.++++.+
T Consensus 81 ~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~~ 114 (114)
T cd02958 81 AIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEEF 114 (114)
T ss_pred EEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhcC
Confidence 9999988999999999999999999999988753
No 4
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.95 E-value=4.1e-27 Score=194.83 Aligned_cols=114 Identities=22% Similarity=0.350 Sum_probs=108.4
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i 199 (312)
||+|+|++|++.||++.||||||||++.|.+|..+||+||+|++|++||++|||+|++|+.++||.++++.+++.+||++
T Consensus 1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL 80 (116)
T ss_pred CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCe--eEEEecCCCChHHHHHHHHHHHhhC
Q 021440 200 LVIDPITGQ--KICSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 200 ~IIdprTGe--~v~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
+||+|+.++ .+.+++|.++|++|+..|+.+++++
T Consensus 81 ~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 81 AMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred EEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 999987654 3667999999999999999999864
No 5
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=99.89 E-value=9.9e-23 Score=172.84 Aligned_cols=114 Identities=23% Similarity=0.230 Sum_probs=103.2
Q ss_pred cccccHHHHHHHH----HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh------------
Q 021440 120 MFNGSFEKAKDAA----LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE------------ 183 (312)
Q Consensus 120 ~~~gsf~~A~~~A----k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E------------ 183 (312)
||.|+|++|++.| |++.|+|+||||++.+..|..|||+|+++++|++||++|||+|.+|+..++
T Consensus 1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~ 80 (136)
T cd02990 1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRH 80 (136)
T ss_pred CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhh
Confidence 5899999999999 999999999999999999999999999999999999999999999999987
Q ss_pred ----HHHHHHhcCCCCCCeEEEEeCCCC--eeEEEecCCCChHHHHHHHHHHHhhC
Q 021440 184 ----GWKVCSFYNMDSIPAVLVIDPITG--QKICSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 184 ----G~~~~~~Y~~~~~P~i~IIdprTG--e~v~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
+.+.++.+++++||+++||.+..+ +.+.+.+|.++|++++++|.+.++.|
T Consensus 81 ~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~~ 136 (136)
T cd02990 81 FGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEMF 136 (136)
T ss_pred hhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 334667788999999999987544 44666899999999999999998754
No 6
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.65 E-value=5.2e-16 Score=119.81 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=71.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I 201 (312)
..+|++|++.|++++|+|||+|++.||..|+.|+|.||.+++|++++++|||+++++.+..++...... ..+|+++|
T Consensus 3 ~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~~ 79 (82)
T PF13899_consen 3 QSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFFF 79 (82)
T ss_dssp ESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEEE
T ss_pred hhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEEE
Confidence 468999999999999999999999999999999999999999999999999999999988777542211 33999999
Q ss_pred EeC
Q 021440 202 IDP 204 (312)
Q Consensus 202 Idp 204 (312)
|||
T Consensus 80 ldp 82 (82)
T PF13899_consen 80 LDP 82 (82)
T ss_dssp EET
T ss_pred eCC
Confidence 997
No 7
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.52 E-value=1.4e-13 Score=113.59 Aligned_cols=109 Identities=21% Similarity=0.231 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHcC-CeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCCh-----------hHHHHHHhc
Q 021440 124 SFEKAKDAALAQD-KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS-----------EGWKVCSFY 191 (312)
Q Consensus 124 sf~~A~~~Ak~~~-KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~-----------EG~~~~~~Y 191 (312)
++.++++.|++++ |++||+++++||..|+.|...++.++.+.+.++++|+++.++++.. ....++..|
T Consensus 1 ~~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 1 DLYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred ChHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 3568899999999 9999999999999999999999999999999999999999998764 356889999
Q ss_pred CCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440 192 NMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 192 ~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
.+..+|+++|+++..|+.+..+.|+.+.+.|...|..++++
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99999999999984378888999999999999999888765
No 8
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.52 E-value=1.2e-13 Score=115.81 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--HHH----HhcCCCCCCeE
Q 021440 126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--KVC----SFYNMDSIPAV 199 (312)
Q Consensus 126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--~~~----~~Y~~~~~P~i 199 (312)
++|++.|++++|+|||+++++||.+|++|.+.||.+++|.++|+++||++.+|++..... ++. ..|++..+|++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 578999999999999999999999999999999999999999999999999998763211 122 24678899999
Q ss_pred EEEeCCCCeeEEEecC
Q 021440 200 LVIDPITGQKICSWCG 215 (312)
Q Consensus 200 ~IIdprTGe~v~~~~G 215 (312)
+|++| .|+.+....+
T Consensus 85 vfl~~-~G~~~~~~~~ 99 (124)
T cd02955 85 VFLTP-DLKPFFGGTY 99 (124)
T ss_pred EEECC-CCCEEeeeee
Confidence 99999 5998866433
No 9
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.52 E-value=2.5e-14 Score=120.77 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=77.8
Q ss_pred ccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440 119 VMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPA 198 (312)
Q Consensus 119 l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~ 198 (312)
|-+..+|++|++.||+++|+|||++++.||..|+.|.+.||++++|++++++|||...++.+..+.. +. . ....+|+
T Consensus 6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~-~~-~-~g~~vPt 82 (130)
T cd02960 6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN-LS-P-DGQYVPR 82 (130)
T ss_pred ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC-cC-c-cCcccCe
Confidence 3345589999999999999999999999999999999999999999999999999888887754311 00 0 1135899
Q ss_pred EEEEeCCCCeeEEEecCC
Q 021440 199 VLVIDPITGQKICSWCGM 216 (312)
Q Consensus 199 i~IIdprTGe~v~~~~G~ 216 (312)
++++|| .|+.+....|+
T Consensus 83 ivFld~-~g~vi~~i~Gy 99 (130)
T cd02960 83 IMFVDP-SLTVRADITGR 99 (130)
T ss_pred EEEECC-CCCCccccccc
Confidence 999998 58888777775
No 10
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.38 E-value=2.3e-12 Score=102.89 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=88.2
Q ss_pred HHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCCh--hHHHHHHhcCCCCCCeEEEEeC
Q 021440 127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS--EGWKVCSFYNMDSIPAVLVIDP 204 (312)
Q Consensus 127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~--EG~~~~~~Y~~~~~P~i~IIdp 204 (312)
+++..|.+++|++||+++.+||.+|+.|.+.++.++.+.+.++++|++..++.+.. ....+++.|++..+|++.|+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 56778889999999999999999999999998899999999988999999987653 3578999999999999999997
Q ss_pred CCCeeEEEecCCCChHHHHHHH
Q 021440 205 ITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 205 rTGe~v~~~~G~~~~~~fl~~L 226 (312)
-.|+.+....|+.+.++|.+.|
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccCHHHHHHHh
Confidence 3488888889999999887765
No 11
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.36 E-value=9.1e-13 Score=90.60 Aligned_cols=41 Identities=34% Similarity=0.678 Sum_probs=36.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE 50 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~ 50 (312)
+++|.+||+| ||+++++|++||+++||||+.||++||+.++
T Consensus 1 ~e~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 1 DEKIAQFMSI-TGADEDVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHH-H-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred CHHHHHHHHH-HCcCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 5799999999 7889999999999999999999999999765
No 12
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.33 E-value=5.2e-12 Score=110.33 Aligned_cols=106 Identities=13% Similarity=0.190 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--HHH---H-hcCCCCCCe
Q 021440 125 FEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--KVC---S-FYNMDSIPA 198 (312)
Q Consensus 125 f~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--~~~---~-~Y~~~~~P~ 198 (312)
.++|++.||+++|.|||.|...||..|++|.++++.|++|.++||+|||-..+|.+..... .|. + ......+|.
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence 4799999999999999999999999999999999999999999999999999987763222 121 1 225689999
Q ss_pred EEEEeCCCCeeEEEecCCCCh------HHHHHHHHHHHhh
Q 021440 199 VLVIDPITGQKICSWCGMINP------QPLGEMLLPFMDR 232 (312)
Q Consensus 199 i~IIdprTGe~v~~~~G~~~~------~~fl~~L~~fl~~ 232 (312)
.++++| .|+.+.. .+++.+ ..|++.|..+-+.
T Consensus 106 ~vfltP-dg~p~~~-~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 106 TVFLTP-DGKPFFG-GTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp EEEE-T-TS-EEEE-ESS--SS-BTTB--HHHHHHHHHHH
T ss_pred eEEECC-CCCeeee-eeecCCCCCCCCccHHHHHHHHHHH
Confidence 999999 6887754 223444 2566666554433
No 13
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=99.31 E-value=2.6e-12 Score=128.41 Aligned_cols=200 Identities=17% Similarity=0.153 Sum_probs=131.1
Q ss_pred hhHHHhhhcCCCccccccccHHHHHHHHHHcC----CeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC
Q 021440 105 SHDILASLYRPPFHVMFNGSFEKAKDAALAQD----KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD 180 (312)
Q Consensus 105 ~~~~La~lfrPP~~l~~~gsf~~A~~~Ak~~~----KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d 180 (312)
+.+.|.+.|...++-||.|.+..|...|..+. |.|++|||++.......||+.|+|++.|++||+++||+|.+++.
T Consensus 147 f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~dvt 226 (460)
T KOG1363|consen 147 FVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLRENFLLWGWDVT 226 (460)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHhhceeeeccccc
Confidence 77899999988888889999888888887776 99999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCCC--CCCeEEEEeCCCCeeE----------------EEecCCCChHHHHHHHHHHHhhCCCCcCCccc
Q 021440 181 TSEGWKVCSFYNMD--SIPAVLVIDPITGQKI----------------CSWCGMINPQPLGEMLLPFMDRSPRKCATIII 242 (312)
Q Consensus 181 s~EG~~~~~~Y~~~--~~P~i~IIdprTGe~v----------------~~~~G~~~~~~fl~~L~~fl~~~~~~~~~~~~ 242 (312)
+++|+.+...+.+. .+|++.++.+..++++ ...+|.++..+.+..+..+++.+.... .
T Consensus 227 ~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~~----q 302 (460)
T KOG1363|consen 227 ESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEERRL----Q 302 (460)
T ss_pred CchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHH----h
Confidence 99999999888887 4455554444333321 112344444444444433333332210 0
Q ss_pred cccCCCCCC--CCChHHHHHHHHHHhhHhhcCC----C--CCCCCCC--CCCCccccccccccCccCCCCCCCCCC
Q 021440 243 ERQRASSTT--PQRNIKDCCSALAASMETIKDT----I--GVSPSDA--DVTSADKEATSTTQGTAYPALPEEPNV 308 (312)
Q Consensus 243 k~~~~~~~~--~~~~~eql~~Ai~~Sl~~~~~~----~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (312)
.+.+..+.. ..-+.+|++.++++||+..+-- . ....... ...-+.+.|++-..+-.+..||.||+.
T Consensus 303 ~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~~e~e~~~e~~r~e~er~~~~ee~e~~R~~l~~es~lp~EP~a 378 (460)
T KOG1363|consen 303 MRRSEQDEREARLALEQEQDDEYQASLEADRVREAEAEQAAEEFRLEKERKEEEEERETARQLLALESSLPPEPSA 378 (460)
T ss_pred hcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHhhhccCCCCCCc
Confidence 011110000 1112367899999999854421 0 0000011 111122226666567789999999944
No 14
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.18 E-value=1.1e-11 Score=99.57 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=78.4
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh------------------HHHHHHhcCC
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE------------------GWKVCSFYNM 193 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E------------------G~~~~~~Y~~ 193 (312)
||.++|.++|++.++||..|+.|.+.++.+.++...++++|.++.++.+... ..+++..|++
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 5778999999999999999999999999999999999989999988887654 2468889999
Q ss_pred CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440 194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L 226 (312)
..+|+++++|+ .|+.+.+..|++++++|...|
T Consensus 81 ~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence 99999999995 599998899999999998876
No 15
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.14 E-value=8.6e-11 Score=97.11 Aligned_cols=102 Identities=21% Similarity=0.181 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCC--CCeEEE
Q 021440 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDS--IPAVLV 201 (312)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~--~P~i~I 201 (312)
+|++|++.|++++|++||+++.+||.+|+.|.+.+...+.+.. ++.+||...++.+.. .....|++.. +|++++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~---~~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE---PKDEEFSPDGGYIPRILF 82 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC---chhhhcccCCCccceEEE
Confidence 7999999999999999999999999999999998877777766 677899887765432 1234677754 999999
Q ss_pred EeCCCCeeEEE---ecCCCChHHHHHHHHHHH
Q 021440 202 IDPITGQKICS---WCGMINPQPLGEMLLPFM 230 (312)
Q Consensus 202 IdprTGe~v~~---~~G~~~~~~fl~~L~~fl 230 (312)
++| .|+.+.+ .-|..+.+.|...|....
T Consensus 83 ~~~-~Gk~~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 83 LDP-SGDVHPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred ECC-CCCCchhhccCCCCccccccCCCHHHHH
Confidence 998 5998775 456667777766666554
No 16
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.14 E-value=2e-10 Score=118.32 Aligned_cols=106 Identities=18% Similarity=0.303 Sum_probs=94.3
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--hhHHHHHHhcCCCCCCeE
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--SEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--~EG~~~~~~Y~~~~~P~i 199 (312)
..+|+++++.|+.++|.+||+++.+||..|+.|.+.++.+++|++.++ +|++.++|++. ++...+++.|++..+|++
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~ 538 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTI 538 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEE
Confidence 346889999999999999999999999999999999999999999996 69999999875 456789999999999999
Q ss_pred EEEeCCCCeeE--EEecCCCChHHHHHHHHHH
Q 021440 200 LVIDPITGQKI--CSWCGMINPQPLGEMLLPF 229 (312)
Q Consensus 200 ~IIdprTGe~v--~~~~G~~~~~~fl~~L~~f 229 (312)
.++|+ .|+.+ .++.|..++++|++.|++.
T Consensus 539 ~~~~~-~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 539 LFFDA-QGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEECC-CCCCcccccccCCCCHHHHHHHHHHh
Confidence 99997 58774 5688999999999888764
No 17
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5.7e-10 Score=96.36 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=95.9
Q ss_pred ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------HHH
Q 021440 121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------GWK 186 (312)
Q Consensus 121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------G~~ 186 (312)
.+-+.-++...|...+|++|+-+.+.+|.-|..|.||++..+.+++++.+||.++-++....+ -..
T Consensus 27 s~~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~E 106 (182)
T COG2143 27 SNIDVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEE 106 (182)
T ss_pred hhhhhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHH
Confidence 334456777888999999999999999999999999999999999999999999999876531 236
Q ss_pred HHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440 187 VCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 187 ~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
+++.|+++++|++++.|- +|+.+....|+++|+.|+..|.=.-+.
T Consensus 107 La~kf~vrstPtfvFfdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 107 LAQKFAVRSTPTFVFFDK-TGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred HHHHhccccCceEEEEcC-CCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999995 899999999999999999887544333
No 18
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.02 E-value=3.2e-09 Score=90.51 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=82.5
Q ss_pred HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCee
Q 021440 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK 209 (312)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~ 209 (312)
+.|...+|.+||+|+.+||.+|+.|...+- .+.+-.+.++-|+.++++..+...++..|++..+|+++|+++ .|+.
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~-~G~~ 89 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR-EGNE 89 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC-CCCE
Confidence 445678999999999999999999965431 233333445556667777766678899999999999999996 6999
Q ss_pred EEEecCCCChHHHHHHHHHHHhhCCC
Q 021440 210 ICSWCGMINPQPLGEMLLPFMDRSPR 235 (312)
Q Consensus 210 v~~~~G~~~~~~fl~~L~~fl~~~~~ 235 (312)
+..+.|....++|.+.|...+...++
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGEPL 115 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999987765
No 19
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=98.94 E-value=4.5e-09 Score=102.64 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=103.5
Q ss_pred ccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440 119 VMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPA 198 (312)
Q Consensus 119 l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~ 198 (312)
+-|+|+..+|+..||..++.++|||.+.++ .++.|+|-+|.+..|.+.+...||...++..+....+|+..|++...|.
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~gddE-~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs 80 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISGDDE-ESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPS 80 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEecCch-HhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccc
Confidence 348999999999999999999999999644 8999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440 199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
+.+|+- +|..+++..|++.+++|.+.|++.+-
T Consensus 81 ~ffIg~-sGtpLevitg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 81 IFFIGF-SGTPLEVITGFVTADELASSIEKVWL 112 (506)
T ss_pred eeeecC-CCceeEEeeccccHHHHHHHHHHHHH
Confidence 999994 89999999999999999888877643
No 20
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.74 E-value=7.7e-08 Score=75.19 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeC
Q 021440 125 FEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204 (312)
Q Consensus 125 f~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdp 204 (312)
|++.+. +..+|.+||+++++||.+|+.+...+ ..+.+.+...+.|..++.+. ...+++.|++..+|+++|++
T Consensus 3 f~~~i~--~~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~- 74 (96)
T cd02956 3 FQQVLQ--ESTQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFA- 74 (96)
T ss_pred hHHHHH--hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEe-
Confidence 444443 34589999999999999999997653 45555556678888887665 45789999999999999997
Q ss_pred CCCeeEEEecCCCChHHHHHHH
Q 021440 205 ITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 205 rTGe~v~~~~G~~~~~~fl~~L 226 (312)
.|+.+..+.|..+.+++...|
T Consensus 75 -~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 75 -AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred -CCEEeeeecCCCCHHHHHHHh
Confidence 588888899988888766544
No 21
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.74 E-value=1.1e-07 Score=76.29 Aligned_cols=94 Identities=16% Similarity=0.275 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCCh-hHHHHHHhcCCCCCCeEE
Q 021440 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTS-EGWKVCSFYNMDSIPAVL 200 (312)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~-EG~~~~~~Y~~~~~P~i~ 200 (312)
.|++++..+ .+|++||+++.+||.+|+.|. +.+.++.++ ++.|..++.+.. +...+++.|++..+|++.
T Consensus 5 ~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 76 (103)
T cd02985 5 ELDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFL 76 (103)
T ss_pred HHHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEE
Confidence 456666443 499999999999999999995 455554443 578999988764 346899999999999988
Q ss_pred EEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440 201 VIDPITGQKICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 201 IIdprTGe~v~~~~G~~~~~~fl~~L~~ 228 (312)
++. .|+.+..+.|. .+.++.+.+..
T Consensus 77 ~~~--~G~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 77 FYK--DGEKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred EEe--CCeEEEEEeCC-CHHHHHHHHHh
Confidence 883 69999999994 56677666543
No 22
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=7.4e-08 Score=82.98 Aligned_cols=106 Identities=21% Similarity=0.300 Sum_probs=84.9
Q ss_pred ccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440 119 VMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPA 198 (312)
Q Consensus 119 l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~ 198 (312)
++-..+.++-...=.+.++++||++|++||.+|+.|..-+ ++-+.++ ...|-|+.++. .+-..++..|.+.++|+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l--~~~~~~~-~g~~k~~kvdt--D~~~ela~~Y~I~avPt 118 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPIL--EELVSEY-AGKFKLYKVDT--DEHPELAEDYEISAVPT 118 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHH--HHHHHhh-cCeEEEEEEcc--ccccchHhhcceeeeeE
Confidence 3345567777788899999999999999999999995433 2223333 34688888754 45567899999999999
Q ss_pred EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440 199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
++++. .|+.+..+.|..+.+.+...+++|+.
T Consensus 119 vlvfk--nGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 119 VLVFK--NGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEE--CCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999 59999899999999999999998874
No 23
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.67 E-value=1.8e-07 Score=73.52 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=70.5
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCee
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK 209 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~ 209 (312)
+.++++++||+++++||..|+.+...+ ..+.+.+. ..++|..++.+..+...++..|++..||++.+.. .|+.
T Consensus 13 ~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~--~g~~ 87 (104)
T cd02997 13 FLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE--NGKF 87 (104)
T ss_pred HHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe--CCCe
Confidence 345677999999999999999997665 34444454 5688888888876678899999999999987775 4888
Q ss_pred EEEecCCCChHHHHH
Q 021440 210 ICSWCGMINPQPLGE 224 (312)
Q Consensus 210 v~~~~G~~~~~~fl~ 224 (312)
+..+.|..+++.+++
T Consensus 88 ~~~~~g~~~~~~l~~ 102 (104)
T cd02997 88 VEKYEGERTAEDIIE 102 (104)
T ss_pred eEEeCCCCCHHHHHh
Confidence 888999988887664
No 24
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.66 E-value=2.4e-07 Score=72.32 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=77.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I 201 (312)
.-+|++.+.. .++.+||+++.+||..|+.+...+ ..+.+-...++.|+.++.+ +...+++.|.+..+|++.+
T Consensus 6 ~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 6 DENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp TTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEE
T ss_pred HHHHHHHHHc---cCCCEEEEEeCCCCCcccccccee---cccccccccccccchhhhh--ccchhhhccCCCCCCEEEE
Confidence 3456665554 679999999999999999996543 3444445558899988776 5588999999999999999
Q ss_pred EeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440 202 IDPITGQKICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 202 IdprTGe~v~~~~G~~~~~~fl~~L~~ 228 (312)
+.. |+.+..+.|..+++.+.+.|.+
T Consensus 78 ~~~--g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 78 FKN--GKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EET--TEEEEEEESSSSHHHHHHHHHH
T ss_pred EEC--CcEEEEEECCCCHHHHHHHHHc
Confidence 984 8888899999999987776653
No 25
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=7.2e-08 Score=99.61 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=70.8
Q ss_pred HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hhHH----HHHHhcC-CCCCCeE
Q 021440 126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SEGW----KVCSFYN-MDSIPAV 199 (312)
Q Consensus 126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~EG~----~~~~~Y~-~~~~P~i 199 (312)
++|+.+||+++|+|||.|--++|..||+|.++.+.|++|.++||+|||..+||.+. |+=- ++++... -+.+|.-
T Consensus 33 ~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt 112 (667)
T COG1331 33 EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT 112 (667)
T ss_pred HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence 79999999999999999999999999999999999999999999999999997553 2211 2333333 2779999
Q ss_pred EEEeCCCCeeE
Q 021440 200 LVIDPITGQKI 210 (312)
Q Consensus 200 ~IIdprTGe~v 210 (312)
+|+.| .|+-+
T Consensus 113 VfLTP-d~kPF 122 (667)
T COG1331 113 VFLTP-DGKPF 122 (667)
T ss_pred EEECC-CCcee
Confidence 99999 57766
No 26
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.59 E-value=5.4e-07 Score=71.12 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI 202 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II 202 (312)
|+|.=....++ .+|.+||++.++||..|+.+.+-+ ++|.+-++.++.|+.+|.+.. ..++..|++..+|++.|+
T Consensus 1 ~~~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 1 GSYALRKLYHE-SDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDED--QEIAEAAGIMGTPTVQFF 74 (97)
T ss_pred CchhHHHHHHh-CCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCC--HHHHHHCCCeeccEEEEE
Confidence 55666666666 889999999999999999997754 456666666788888887643 467889999999999999
Q ss_pred eCCCCeeEEEecCCCChHHHHHHH
Q 021440 203 DPITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 203 dprTGe~v~~~~G~~~~~~fl~~L 226 (312)
. .|+.+....|..+.++|.+.|
T Consensus 75 ~--~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 75 K--DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred E--CCeEEEEEeCCccHHHHHHhh
Confidence 6 489998999988888766654
No 27
>PRK10996 thioredoxin 2; Provisional
Probab=98.58 E-value=6.8e-07 Score=75.79 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=72.7
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC 211 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~ 211 (312)
+.+++|.++|+++.+||..|+.|... | ..+.+-.+.++.|..++.+.. ..++..|++..+|+++|++ .|+.+.
T Consensus 48 ~i~~~k~vvv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~V~~~Ptlii~~--~G~~v~ 120 (139)
T PRK10996 48 LLQDDLPVVIDFWAPWCGPCRNFAPI-F--EDVAAERSGKVRFVKVNTEAE--RELSARFRIRSIPTIMIFK--NGQVVD 120 (139)
T ss_pred HHhCCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHhCCCeEEEEEeCCCC--HHHHHhcCCCccCEEEEEE--CCEEEE
Confidence 44668999999999999999999653 3 335555566788888877653 4688999999999999886 699999
Q ss_pred EecCCCChHHHHHHHHHH
Q 021440 212 SWCGMINPQPLGEMLLPF 229 (312)
Q Consensus 212 ~~~G~~~~~~fl~~L~~f 229 (312)
.+.|..+.+.|.+.|.+.
T Consensus 121 ~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 999998888777776653
No 28
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.57 E-value=3.5e-07 Score=73.90 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHH-hcCCCCCCeEE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCS-FYNMDSIPAVL 200 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~-~Y~~~~~P~i~ 200 (312)
.+|+ ++..|++++|.+||+++.+||..|+.|... | ..+.+.++. +|.|..++.+.. ...++. .|++..||++.
T Consensus 9 ~~~~-~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 9 AEIE-ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGE-QREFAKEELQLKSFPTIL 83 (109)
T ss_pred HHHH-HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCCcCCEEE
Confidence 3454 666778899999999999999999999876 3 456666665 599999988763 345565 69999999999
Q ss_pred EEeCCCCeeEEEecCC-CChHHHHH
Q 021440 201 VIDPITGQKICSWCGM-INPQPLGE 224 (312)
Q Consensus 201 IIdprTGe~v~~~~G~-~~~~~fl~ 224 (312)
++++. |..+..+.|. .+.+.++.
T Consensus 84 ~f~~~-~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 84 FFPKN-SRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred EEcCC-CCCceeccCCCCCHHHHHh
Confidence 99874 4456778884 57776543
No 29
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.54 E-value=7.8e-07 Score=72.32 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=74.7
Q ss_pred cccccccHHHHHHHHH--HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhHHHHHHhcCCC
Q 021440 118 HVMFNGSFEKAKDAAL--AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEGWKVCSFYNMD 194 (312)
Q Consensus 118 ~l~~~gsf~~A~~~Ak--~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG~~~~~~Y~~~ 194 (312)
+.-|.-+..+..+.+. ..+|++||+++++||..|+.+.+.+. ++.+-++ .++.|..++.+.. ..++..|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~---~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~ 78 (111)
T cd02963 4 DYKYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWK---EVIQELEPLGVGIATVNAGHE--RRLARKLGAH 78 (111)
T ss_pred chhheeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHH---HHHHHHHhcCceEEEEecccc--HHHHHHcCCc
Confidence 3334445555555554 47899999999999999999987532 4444444 3588888876653 4678999999
Q ss_pred CCCeEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440 195 SIPAVLVIDPITGQKICSWCGMINPQPLGEMLL 227 (312)
Q Consensus 195 ~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~ 227 (312)
++|++.|+. .|+.+....|..+.+.+.+.|.
T Consensus 79 ~~Pt~~i~~--~g~~~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 79 SVPAIVGII--NGQVTFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred cCCEEEEEE--CCEEEEEecCCCCHHHHHHHHh
Confidence 999999996 5887777889887776554443
No 30
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=7.6e-07 Score=72.75 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=77.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc--EEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN--FIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n--FIfwq~~~ds~EG~~~~~~Y~~~~~P~i 199 (312)
..+|+.....+...+|.|+|+++++||.+|..| .|.+.++-.++ -+|+.+|+|. -..+++.|++...|++
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i------~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf 78 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAI------APKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTF 78 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhh------hhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEE
Confidence 456788888888889999999999999999999 57788887764 7999999998 8899999999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHH
Q 021440 200 LVIDPITGQKICSWCGMINPQPLGE 224 (312)
Q Consensus 200 ~IIdprTGe~v~~~~G~~~~~~fl~ 224 (312)
.++- .|+.+....|.- +.++.+
T Consensus 79 ~f~k--~g~~~~~~vGa~-~~~l~~ 100 (106)
T KOG0907|consen 79 VFYK--GGEEVDEVVGAN-KAELEK 100 (106)
T ss_pred EEEE--CCEEEEEEecCC-HHHHHH
Confidence 9995 699999888854 333333
No 31
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.49 E-value=4.8e-07 Score=79.12 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=72.4
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--HH-------------------HHHHh
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--GW-------------------KVCSF 190 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--G~-------------------~~~~~ 190 (312)
+...+|+++|+++.+||..|+.+. +.+.++.+.++.++.++.+... .. ++...
T Consensus 59 ~~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~ 132 (173)
T TIGR00385 59 AFIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLD 132 (173)
T ss_pred HhcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHh
Confidence 344689999999999999999874 4566666667777777654321 11 33456
Q ss_pred cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440 191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
|++..+|+..+||+ .|+.+.++.|..+.+++.+.|.++|.
T Consensus 133 ~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 133 LGVYGAPETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred cCCeeCCeEEEEcC-CceEEEEEeccCCHHHHHHHHHHHhh
Confidence 67778999999997 59999999999999999999998874
No 32
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.48 E-value=1.1e-06 Score=70.01 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=73.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I 201 (312)
..+|++.+. +.+|.+||+++++||..|+.|...+ ..+.+-++..+.|..++.+..+...++..|++..+|++.|
T Consensus 7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~---~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEY---AKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHH---HHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 455666654 4688899999999999999997642 2344455556778888888777788999999999999999
Q ss_pred EeCCC---CeeEEEecCCCChHHHHH
Q 021440 202 IDPIT---GQKICSWCGMINPQPLGE 224 (312)
Q Consensus 202 IdprT---Ge~v~~~~G~~~~~~fl~ 224 (312)
+++.. +.....+.|..+.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~ 106 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVD 106 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHH
Confidence 99732 124556788887776554
No 33
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.45 E-value=1.5e-06 Score=71.98 Aligned_cols=96 Identities=14% Similarity=0.227 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--c-EEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--N-FIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--n-FIfwq~~~ds~EG~~~~~~Y~~~~~P~i 199 (312)
..|++++..| ++|.++|.+..+||.+|+.| +|-+.++-++ + .+|+.+|+| |-..+++.|.+...|+.
T Consensus 3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~m------dp~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~amPtf 72 (114)
T cd02986 3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQL------DDILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHhc--CCCEEEEEEeCCCChhHHHH------HHHHHHHHHHccCceEEEEEecc--ccHHHHHhcCceeCcEE
Confidence 4688888888 89999999999999999999 4555666553 5 789999887 56679999999999999
Q ss_pred EEEeCCCCeeEEE---------ecCCC-ChHHHHHHHHHHH
Q 021440 200 LVIDPITGQKICS---------WCGMI-NPQPLGEMLLPFM 230 (312)
Q Consensus 200 ~IIdprTGe~v~~---------~~G~~-~~~~fl~~L~~fl 230 (312)
+++- .|+-|++ |+|.+ +.++||..+....
T Consensus 73 vffk--ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 73 IFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEEE--CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 9886 3666655 56655 6688988876543
No 34
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.45 E-value=1e-06 Score=72.64 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=74.8
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHH-HhcCCCCCCe
Q 021440 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC-SFYNMDSIPA 198 (312)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~-~~Y~~~~~P~ 198 (312)
+-..+|+++... .++++++||+++.+||.+|+.|.-.+ +++.+.++.+..|.++|.+... .++ ..|++..||+
T Consensus 14 l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~---~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PT 87 (113)
T cd03006 14 FYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEF---EQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPV 87 (113)
T ss_pred echhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCE
Confidence 346678877554 78899999999999999999996422 3455555667888999877544 467 5899999999
Q ss_pred EEEEeCCCCeeEEEecCCCChHHHHH
Q 021440 199 VLVIDPITGQKICSWCGMINPQPLGE 224 (312)
Q Consensus 199 i~IIdprTGe~v~~~~G~~~~~~fl~ 224 (312)
|.+.- .|+....+.|..+.+.++.
T Consensus 88 l~lf~--~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 88 IHLYY--RSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEEE--CCccceEEeCCCCHHHHHh
Confidence 99994 5777778899888887654
No 35
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.43 E-value=5.3e-07 Score=91.99 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=84.6
Q ss_pred HHHHHHHcCC--eEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC--ChhHHHHHHhcCCCCCCeEEEEe
Q 021440 128 AKDAALAQDK--WLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--TSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 128 A~~~Ak~~~K--wLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d--s~EG~~~~~~Y~~~~~P~i~IId 203 (312)
.++.+..++| ++|||++.+||-.|+.+.|-|++++.|..-+. ++|++|.|+. +++-..+.+.|++-.-|++.+.+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 5555555555 99999999999999999999999888877665 8999999866 46666899999999999999999
Q ss_pred CCCCeeEEEecCCCChHHHHHHHHHH
Q 021440 204 PITGQKICSWCGMINPQPLGEMLLPF 229 (312)
Q Consensus 204 prTGe~v~~~~G~~~~~~fl~~L~~f 229 (312)
+. |+......|+++.+.|++.|+++
T Consensus 543 ~~-g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQ-GSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CC-CCcCcCCcceecHHHHHHHHHHh
Confidence 85 55544589999999999999876
No 36
>PHA02278 thioredoxin-like protein
Probab=98.43 E-value=2.2e-06 Score=69.43 Aligned_cols=83 Identities=16% Similarity=0.180 Sum_probs=63.5
Q ss_pred HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCCh--hHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTS--EGWKVCSFYNMDSIPAVLVIDPITGQ 208 (312)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~--EG~~~~~~Y~~~~~P~i~IIdprTGe 208 (312)
++++.++|+++.+||.+|+.|.+ .+.++-.+ ..-|+.+++|.. +...++..|++.+.|+++++. .|+
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p------~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk--~G~ 83 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKS------VIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK--DGQ 83 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHH------HHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE--CCE
Confidence 58999999999999999999964 33333322 223566666653 245689999999999999998 499
Q ss_pred eEEEecCCCChHHHHH
Q 021440 209 KICSWCGMINPQPLGE 224 (312)
Q Consensus 209 ~v~~~~G~~~~~~fl~ 224 (312)
.+....|..+++.+.+
T Consensus 84 ~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 84 LVKKYEDQVTPMQLQE 99 (103)
T ss_pred EEEEEeCCCCHHHHHh
Confidence 9999999887776543
No 37
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.42 E-value=1.7e-06 Score=67.37 Aligned_cols=92 Identities=14% Similarity=0.232 Sum_probs=68.3
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId 203 (312)
+|++++..+. +|.+||+++.+||..|+.|.+.+ +.+.+-+..++.|+.++.+ +-..++..|++..+|++.|+.
T Consensus 4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~l---~~l~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQVF---EELAKEAFPSVLFLSIEAE--ELPEISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHHH---HHHHHHhCCceEEEEEccc--cCHHHHHhcCCccccEEEEEE
Confidence 4666666664 79999999999999999996632 2333333457888888665 345688999999999999997
Q ss_pred CCCCeeEEEecCCCChHHHHHH
Q 021440 204 PITGQKICSWCGMINPQPLGEM 225 (312)
Q Consensus 204 prTGe~v~~~~G~~~~~~fl~~ 225 (312)
.|+.+....|. .++.+.+.
T Consensus 77 --~g~~~~~~~g~-~~~~l~~~ 95 (97)
T cd02984 77 --NGTIVDRVSGA-DPKELAKK 95 (97)
T ss_pred --CCEEEEEEeCC-CHHHHHHh
Confidence 48888888885 45555443
No 38
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.42 E-value=1.7e-06 Score=66.28 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=70.9
Q ss_pred HHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh--hccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCC
Q 021440 128 AKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII--SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPI 205 (312)
Q Consensus 128 A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i--~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdpr 205 (312)
....+.++++.+||++.++||..|+.+...+ ..+.+-+ +.++.|..++.+. ...++..|++..+|++.++++.
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEY---EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHH---HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCC
Confidence 4455666677999999999999999997643 3455556 5778888887665 6688999999999999999973
Q ss_pred CCeeEEEecCCCChHHHHH
Q 021440 206 TGQKICSWCGMINPQPLGE 224 (312)
Q Consensus 206 TGe~v~~~~G~~~~~~fl~ 224 (312)
|..+..+.|..+++++++
T Consensus 82 -~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 82 -SKEPVKYEGPRTLESLVE 99 (101)
T ss_pred -CcccccCCCCcCHHHHHh
Confidence 466777888888877654
No 39
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.41 E-value=3.5e-06 Score=67.32 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=65.8
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI 210 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v 210 (312)
+.+.+|.++|+++++||.+|+.+...+ ..+.+-.+. +..|..++.|. ...++.|++..+|++.|+. .|+.+
T Consensus 13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~l---~~~~~~~~~~~~~~~~vd~d~---~~~~~~~~v~~~Pt~~~~~--~g~~~ 84 (102)
T cd02948 13 LLSNKGLTVVDVYQEWCGPCKAVVSLF---KKIKNELGDDLLHFATAEADT---IDTLKRYRGKCEPTFLFYK--NGELV 84 (102)
T ss_pred HHccCCeEEEEEECCcCHhHHHHhHHH---HHHHHHcCCCcEEEEEEeCCC---HHHHHHcCCCcCcEEEEEE--CCEEE
Confidence 345799999999999999999996543 334443443 35677787773 3578999999999998886 59999
Q ss_pred EEecCCCChHHHHHHHH
Q 021440 211 CSWCGMINPQPLGEMLL 227 (312)
Q Consensus 211 ~~~~G~~~~~~fl~~L~ 227 (312)
....|. +++.+.+.|.
T Consensus 85 ~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 85 AVIRGA-NAPLLNKTIT 100 (102)
T ss_pred EEEecC-ChHHHHHHHh
Confidence 888885 7777666654
No 40
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.41 E-value=2.6e-06 Score=73.11 Aligned_cols=102 Identities=10% Similarity=0.144 Sum_probs=76.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--c-EEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--N-FIFWQEYDDTSEGWKVCSFYNMDSIPA 198 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--n-FIfwq~~~ds~EG~~~~~~Y~~~~~P~ 198 (312)
...|++|+..+ .+|+++|++..+||.+|++| +|-+.++-.+ + ..|+.+|+| +...+++.|.+.+.|.
T Consensus 11 ~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m------~p~l~~la~~~~~~~~~~kVDVD--e~~dla~~y~I~~~~t 80 (142)
T PLN00410 11 GWAVDQAILAE--EERLVVIRFGHDWDETCMQM------DEVLASVAETIKNFAVIYLVDIT--EVPDFNTMYELYDPCT 80 (142)
T ss_pred HHHHHHHHHhc--CCCEEEEEEECCCChhHHHH------HHHHHHHHHHcCCceEEEEEECC--CCHHHHHHcCccCCCc
Confidence 44577777644 78999999999999999999 3445555443 3 556888887 4558999999987766
Q ss_pred EE-EEeCCCCe-eEEEecC--------CCChHHHHHHHHHHHhhCCC
Q 021440 199 VL-VIDPITGQ-KICSWCG--------MINPQPLGEMLLPFMDRSPR 235 (312)
Q Consensus 199 i~-IIdprTGe-~v~~~~G--------~~~~~~fl~~L~~fl~~~~~ 235 (312)
+. +.- .|+ +++...| ..+.++|++.+..++.....
T Consensus 81 ~~~ffk--~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~ 125 (142)
T PLN00410 81 VMFFFR--NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
T ss_pred EEEEEE--CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhc
Confidence 66 554 577 6666677 56889999999999876543
No 41
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.37 E-value=2.6e-06 Score=67.51 Aligned_cols=93 Identities=13% Similarity=0.086 Sum_probs=68.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI 202 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II 202 (312)
.+|++.+ +..++.+||+++++||..|+.|...+ +.+.+-++.++.|..++.+. ...+++.|++..||++.++
T Consensus 9 ~~f~~~i---~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 9 EDFPELV---LNRKEPWLVDFYAPWCGPCQALLPEL---RKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLY 80 (104)
T ss_pred HHHHHHH---hcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEE
Confidence 3565554 34677999999999999999996422 22333334457788887765 4568899999999999999
Q ss_pred eCCCCeeEEEecCCCC-hHHHHH
Q 021440 203 DPITGQKICSWCGMIN-PQPLGE 224 (312)
Q Consensus 203 dprTGe~v~~~~G~~~-~~~fl~ 224 (312)
.. .|+.+..+.|..+ .+++.+
T Consensus 81 ~~-g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 81 PG-NASKYHSYNGWHRDADSILE 102 (104)
T ss_pred cC-CCCCceEccCCCCCHHHHHh
Confidence 85 3477888999876 776543
No 42
>PRK09381 trxA thioredoxin; Provisional
Probab=98.36 E-value=5.2e-06 Score=66.46 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId 203 (312)
+|.+.. .+.+++++|+++++||..|+.+...+ +.+.+-.+.++.|..++.+... .++..|++..+|+++|+.
T Consensus 12 ~~~~~v---~~~~~~vvv~f~~~~C~~C~~~~p~~---~~l~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~ 83 (109)
T PRK09381 12 SFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLFK 83 (109)
T ss_pred hHHHHH---hcCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHhCCCcEEEEEECCCCh--hHHHhCCCCcCCEEEEEe
Confidence 355444 34689999999999999999996433 2333344455777877776543 467889999999999996
Q ss_pred CCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440 204 PITGQKICSWCGMINPQPLGEMLLPFM 230 (312)
Q Consensus 204 prTGe~v~~~~G~~~~~~fl~~L~~fl 230 (312)
.|+.+....|..+.+++.+.|...|
T Consensus 84 --~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 84 --NGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred --CCeEEEEecCCCCHHHHHHHHHHhc
Confidence 5888888899888877666655543
No 43
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.34 E-value=3.5e-06 Score=67.17 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL 200 (312)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~ 200 (312)
+++++.+.+++ ++.+||+++.+||..|+.+... |. .+.+-++ .++.+..++.+. ...+++.|++..+|++.
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEPV-WN--EVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTIK 77 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhChH-HH--HHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEEE
Confidence 56677777654 6788999999999999999864 32 3444443 247777776654 34678899999999999
Q ss_pred EEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440 201 VIDPITGQKICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 201 IIdprTGe~v~~~~G~~~~~~fl~~L~~ 228 (312)
++.. | .+..+.|..+.+++.+.+.+
T Consensus 78 l~~~--~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 78 LLKG--D-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred EEcC--C-CceeecCCCCHHHHHHHHHh
Confidence 9963 4 34567888787776555543
No 44
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.34 E-value=4e-06 Score=65.31 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (312)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I 201 (312)
+|++++ .+++.++|+++++||..|+.|- ..| +.+.+-++. ++.|..++ ..+...++..|++..+|++++
T Consensus 5 ~~~~~~----~~~~~~~i~f~~~~C~~c~~~~-~~~--~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 5 NFDDIV----LSNKDVLVEFYAPWCGHCKNLA-PEY--EKLAKELKGDPDIVLAKVD--ATAEKDLASRFGVSGFPTIKF 75 (102)
T ss_pred hHHHHh----ccCCcEEEEEECCCCHHHHhhC-hHH--HHHHHHhccCCceEEEEEE--ccchHHHHHhCCCCcCCEEEE
Confidence 455554 3799999999999999999984 344 345555555 56666654 445678889999999999999
Q ss_pred EeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440 202 IDPITGQKICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 202 IdprTGe~v~~~~G~~~~~~fl~~L~~ 228 (312)
+++ |+.+..+.|..+.+.+...|.+
T Consensus 76 ~~~--~~~~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 76 FPK--GKKPVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred ecC--CCcceeecCCCCHHHHHHHHHh
Confidence 996 3436778998888876555543
No 45
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.32 E-value=1e-05 Score=62.63 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=68.8
Q ss_pred HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS 212 (312)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~ 212 (312)
+..+|.++|+++++||..|+.+...+ ..+.+-++.++.|+.++.+.. ..+++.|.+..+|+++++. .|+.+..
T Consensus 11 ~~~~~~vvi~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~--~g~~~~~ 83 (101)
T TIGR01068 11 ASSDKPVLVDFWAPWCGPCKMIAPIL---EELAKEYEGKVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFK--NGKEVDR 83 (101)
T ss_pred hhcCCcEEEEEECCCCHHHHHhCHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCcCCEEEEEe--CCcEeee
Confidence 34578999999999999999997643 344444566788888877654 3578899999999999995 5887777
Q ss_pred ecCCCChHHHHHHHHH
Q 021440 213 WCGMINPQPLGEMLLP 228 (312)
Q Consensus 213 ~~G~~~~~~fl~~L~~ 228 (312)
..|..+.+++.+.|.+
T Consensus 84 ~~g~~~~~~l~~~l~~ 99 (101)
T TIGR01068 84 SVGALPKAALKQLINK 99 (101)
T ss_pred ecCCCCHHHHHHHHHh
Confidence 8888887776666654
No 46
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.30 E-value=9e-06 Score=67.35 Aligned_cols=85 Identities=11% Similarity=0.151 Sum_probs=65.4
Q ss_pred cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC 211 (312)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~ 211 (312)
.++.++|+++.+||.+|++|. +.+.++..+ ...|+.+|+|. -..++..|++.+.|+++++- .|+.+.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~------P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk--~G~~v~ 82 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMD------EVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFF--RNKHMK 82 (114)
T ss_pred CCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEE--CCEEEE
Confidence 689999999999999999994 555555544 34688888775 45789999999999999998 499887
Q ss_pred EecCC---------C-ChHHHHHHHHHH
Q 021440 212 SWCGM---------I-NPQPLGEMLLPF 229 (312)
Q Consensus 212 ~~~G~---------~-~~~~fl~~L~~f 229 (312)
...|. + +.++||+.+..+
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 83 IDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 76553 2 556777665543
No 47
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.30 E-value=2.9e-06 Score=67.95 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=63.2
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC 211 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~ 211 (312)
|...+|.+||+++.+||.+|+.|...+ +++.+..+ .+.|..++.+. +...++..|++..||++.+++. | .+.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l---~~la~~~~-~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~--g-~~~ 85 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHF---NALSSMFP-QIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNS--T-PRV 85 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHH---HHHHHHhc-cCceEEEECCC-CCHHHHHhcCCeecCEEEEEcC--C-cee
Confidence 457899999999999999999995422 12333333 46777776552 3357889999999999999985 5 677
Q ss_pred EecCCCChHHHHH
Q 021440 212 SWCGMINPQPLGE 224 (312)
Q Consensus 212 ~~~G~~~~~~fl~ 224 (312)
.+.|..+.+.+++
T Consensus 86 ~~~G~~~~~~l~~ 98 (100)
T cd02999 86 RYNGTRTLDSLAA 98 (100)
T ss_pred EecCCCCHHHHHh
Confidence 7899888776554
No 48
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.30 E-value=7.3e-06 Score=61.38 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=65.4
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCee
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK 209 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~ 209 (312)
+-++++.+||++.++||..|+.+.+ .+.++.+ .++.|..++.+. ...++..|++..+|+++++. .|+.
T Consensus 6 ~~~~~~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~--~g~~ 75 (93)
T cd02947 6 LIKSAKPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFK--NGKE 75 (93)
T ss_pred HHhcCCcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEE--CCEE
Confidence 3444499999999999999999965 3344443 678888887665 55688899999999999997 4888
Q ss_pred EEEecCCCChHHHHHHH
Q 021440 210 ICSWCGMINPQPLGEML 226 (312)
Q Consensus 210 v~~~~G~~~~~~fl~~L 226 (312)
+..+.|..+.+.+...|
T Consensus 76 ~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 76 VDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEecCCCHHHHHHHh
Confidence 88899988776655443
No 49
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.30 E-value=4.4e-06 Score=66.05 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=68.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI 202 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II 202 (312)
.+|++.+ .++|.+||+++++||..|+.|...+ ..+.+-++.++.|..++.+.. ..+++.|++..||++.++
T Consensus 9 ~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 9 GDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTW---REFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred hhHHHHh----cCCCeEEEEEECCCChHHHHhHHHH---HHHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCEEEEE
Confidence 3566554 3559999999999999999996532 234445566788888888753 568999999999999998
Q ss_pred eCCCCeeEEEecCCCChHHHH
Q 021440 203 DPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 203 dprTGe~v~~~~G~~~~~~fl 223 (312)
. .|+.+..+.|..+.+.+.
T Consensus 80 ~--~g~~~~~~~G~~~~~~l~ 98 (101)
T cd03003 80 P--SGMNPEKYYGDRSKESLV 98 (101)
T ss_pred c--CCCCcccCCCCCCHHHHH
Confidence 4 588777888988877654
No 50
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.27 E-value=2.2e-06 Score=69.72 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=68.5
Q ss_pred HHHHHHcCCeEEEEeecCCCcccchhhcccC----------------CCHHHHHHhhccEEEEEeccCChhHHHHHHhcC
Q 021440 129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTW----------------GNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYN 192 (312)
Q Consensus 129 ~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw----------------~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~ 192 (312)
...+...+|.++|++..+||..|+.+.+.+= +.+.+.++++++-+-|.+..| +...+++.|+
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~ 90 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND--PDGVISARWG 90 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC--CCcHHHHhCC
Confidence 3344456699999999999999999853331 235566666665444444333 2246888999
Q ss_pred CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440 193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L 226 (312)
+..+|++.|||+ .| ....+.|..+++++.+++
T Consensus 91 i~~~P~~~vid~-~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 91 VSVTPAIVIVDP-GG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred CCcccEEEEEcC-CC-eEEEEeccCCHHHHHhhc
Confidence 999999999997 46 777889999999887764
No 51
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.27 E-value=8e-06 Score=65.43 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=66.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc------cEEEEEeccCChhHHHHHHhcCCCC
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV------NFIFWQEYDDTSEGWKVCSFYNMDS 195 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~------nFIfwq~~~ds~EG~~~~~~Y~~~~ 195 (312)
..+|++++ +.++++||+++++||..|+.|...+ . .+.+.+++ ++.|..++.+.. ..+++.|++.+
T Consensus 8 ~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~-~--~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~ 78 (108)
T cd02996 8 SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIF-E--EAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINK 78 (108)
T ss_pred HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHH-H--HHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCc
Confidence 34566544 5678999999999999999997643 1 22222221 477888887764 46899999999
Q ss_pred CCeEEEEeCCCCee-EEEecCCCChHHHHH
Q 021440 196 IPAVLVIDPITGQK-ICSWCGMINPQPLGE 224 (312)
Q Consensus 196 ~P~i~IIdprTGe~-v~~~~G~~~~~~fl~ 224 (312)
||++.++- .|+. ...+.|..+.+++++
T Consensus 79 ~Ptl~~~~--~g~~~~~~~~g~~~~~~l~~ 106 (108)
T cd02996 79 YPTLKLFR--NGMMMKREYRGQRSVEALAE 106 (108)
T ss_pred CCEEEEEe--CCcCcceecCCCCCHHHHHh
Confidence 99999985 4763 466788777776554
No 52
>PTZ00051 thioredoxin; Provisional
Probab=98.22 E-value=1.2e-05 Score=62.70 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeC
Q 021440 127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204 (312)
Q Consensus 127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdp 204 (312)
+.+....+.+++++|+++.+||..|+.+.. .+.++.++ ++.|..++.+ +...++..|++..+|+++|+.
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~- 79 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAP------FYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFK- 79 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhH------HHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEe-
Confidence 334445678999999999999999999954 33343333 4677777655 456789999999999988774
Q ss_pred CCCeeEEEecCCCChHH
Q 021440 205 ITGQKICSWCGMINPQP 221 (312)
Q Consensus 205 rTGe~v~~~~G~~~~~~ 221 (312)
.|+.+..+.|. .+++
T Consensus 80 -~g~~~~~~~G~-~~~~ 94 (98)
T PTZ00051 80 -NGSVVDTLLGA-NDEA 94 (98)
T ss_pred -CCeEEEEEeCC-CHHH
Confidence 69999889885 4443
No 53
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.22 E-value=5.5e-06 Score=64.85 Aligned_cols=89 Identities=11% Similarity=0.099 Sum_probs=65.8
Q ss_pred HHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440 131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ 208 (312)
Q Consensus 131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe 208 (312)
..+..+|.++|+++++||..|+.+...+ ..+.+.++ .++.|..++.+.+ ...+++.|++..+|++.++++ .|+
T Consensus 13 ~~~~~~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~-~~~ 87 (105)
T cd02998 13 VVGDDKKDVLVEFYAPWCGHCKNLAPEY---EKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPK-GST 87 (105)
T ss_pred HhcCCCCcEEEEEECCCCHHHHhhChHH---HHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeC-CCC
Confidence 3455678999999999999999995432 23333333 4688888876664 567899999999999999986 356
Q ss_pred eEEEecCCCChHHHHH
Q 021440 209 KICSWCGMINPQPLGE 224 (312)
Q Consensus 209 ~v~~~~G~~~~~~fl~ 224 (312)
....+.|..+.+++.+
T Consensus 88 ~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 88 EPVKYEGGRDLEDLVK 103 (105)
T ss_pred CccccCCccCHHHHHh
Confidence 6667888877776654
No 54
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.22 E-value=1e-05 Score=63.76 Aligned_cols=91 Identities=7% Similarity=0.120 Sum_probs=65.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL 200 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~ 200 (312)
..+|++++ +++| ||+++.+||.+|+.+...+ . .+.+..+ .++.|..++.+.. ..++..|++..||++.
T Consensus 8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~~-~--~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPEW-E--EFADWSDDLGINVAKVDVTQE--PGLSGRFFVTALPTIY 76 (101)
T ss_pred hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHHH-H--HHHHhhccCCeEEEEEEccCC--HhHHHHcCCcccCEEE
Confidence 45677654 3556 6999999999999997642 2 3333333 2588888887754 3578999999999999
Q ss_pred EEeCCCCeeEEEecCCCChHHHHHHH
Q 021440 201 VIDPITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 201 IIdprTGe~v~~~~G~~~~~~fl~~L 226 (312)
++. .|+ +..+.|..+.+++.+.|
T Consensus 77 ~~~--~g~-~~~~~G~~~~~~l~~~i 99 (101)
T cd02994 77 HAK--DGV-FRRYQGPRDKEDLISFI 99 (101)
T ss_pred EeC--CCC-EEEecCCCCHHHHHHHH
Confidence 873 576 46788988877665544
No 55
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.21 E-value=7.8e-06 Score=64.00 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=65.1
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe-
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ- 208 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe- 208 (312)
.++.+|.+||+++++||..|+.|...+ ..+.+.++. ++.|..+|.+.. .++..|.+..+|++.++.+ |+
T Consensus 14 i~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~~~~~--~~~ 85 (104)
T cd02995 14 VLDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTILFFPA--GDK 85 (104)
T ss_pred HhCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEEEEcC--CCc
Confidence 345568999999999999999997654 556666655 699999988764 4677888899999999974 44
Q ss_pred -eEEEecCCCChHHHHH
Q 021440 209 -KICSWCGMINPQPLGE 224 (312)
Q Consensus 209 -~v~~~~G~~~~~~fl~ 224 (312)
....+.|..+.+.|++
T Consensus 86 ~~~~~~~g~~~~~~l~~ 102 (104)
T cd02995 86 SNPIKYEGDRTLEDLIK 102 (104)
T ss_pred CCceEccCCcCHHHHHh
Confidence 4556788877776654
No 56
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.19 E-value=1.4e-05 Score=70.69 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=69.3
Q ss_pred HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hh-HHH-------------------HHHhcC
Q 021440 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SE-GWK-------------------VCSFYN 192 (312)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~E-G~~-------------------~~~~Y~ 192 (312)
.++|+++||+..+||.+|+..- +.+.++-+.++.++.++.+. .+ ..+ +...|.
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~------p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 3689999999999999999874 34556655567677776543 22 222 334677
Q ss_pred CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440 193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
+..+|+..|||+ .|+.+.++.|.++.+++-..+...+..
T Consensus 140 v~~~P~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 140 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred CCcCCeEEEECC-CceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 788999999997 599999999999988887777777754
No 57
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.18 E-value=1.7e-05 Score=62.06 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i 199 (312)
.+|++++. .+ ++||+++++||..|+.+...+ . .+.+-.+. ++.|..++.+... .+++.|++..+|++
T Consensus 8 ~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~-~--~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~ 77 (102)
T cd03005 8 DNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTW-E--QLAKKFNNENPSVKIAKVDCTQHR--ELCSEFQVRGYPTL 77 (102)
T ss_pred HHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHH-H--HHHHHHhccCCcEEEEEEECCCCh--hhHhhcCCCcCCEE
Confidence 34666653 23 499999999999999996542 2 23333433 6888888766543 67889999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHH
Q 021440 200 LVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 200 ~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
.++. .|+.+..+.|..+.+++.
T Consensus 78 ~~~~--~g~~~~~~~G~~~~~~l~ 99 (102)
T cd03005 78 LLFK--DGEKVDKYKGTRDLDSLK 99 (102)
T ss_pred EEEe--CCCeeeEeeCCCCHHHHH
Confidence 9995 477777889988876643
No 58
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.16 E-value=2.9e-05 Score=73.22 Aligned_cols=94 Identities=13% Similarity=0.007 Sum_probs=73.0
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChh---------HHHHHHhcCCCCCCeEEE
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSE---------GWKVCSFYNMDSIPAVLV 201 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~E---------G~~~~~~Y~~~~~P~i~I 201 (312)
+.-.+|++||++..+||..|+.+ .+.+.++.++ ++.+..+++|... ...+++.|++..+|++.|
T Consensus 162 ~~l~~k~~Lv~F~AswCp~C~~~------~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 162 KDLAKKSGLFFFFKSDCPYCHQQ------APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHhcCCeEEEEEECCCCccHHHH------hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 44558999999999999999998 4667777765 3666666666421 124678999999999999
Q ss_pred EeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440 202 IDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
+++.+|+...+..|.++.+++.+.+.....
T Consensus 236 v~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 236 ADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 998766665567799999999988887654
No 59
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.11 E-value=3.4e-05 Score=68.18 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=70.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVL 200 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~ 200 (312)
..|.+++..+. .+++++|+|+.+||.+|+.|+. .+.++..+ +..|+.++++.. .++..|++...|+|+
T Consensus 71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~~------~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~vPTll 140 (175)
T cd02987 71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALNS------SLLCLAAEYPAVKFCKIRASAT---GASDEFDTDALPALL 140 (175)
T ss_pred HHHHHHHHhcC-CCcEEEEEEECCCCchHHHHHH------HHHHHHHHCCCeEEEEEeccch---hhHHhCCCCCCCEEE
Confidence 45555553322 2469999999999999999964 45555554 478899988854 788999999999999
Q ss_pred EEeCCCCeeEEEecCCC---ChHHHHHHHHHHHhh
Q 021440 201 VIDPITGQKICSWCGMI---NPQPLGEMLLPFMDR 232 (312)
Q Consensus 201 IIdprTGe~v~~~~G~~---~~~~fl~~L~~fl~~ 232 (312)
|+- .|+.+..+.|.. ..+-..+.|..||.+
T Consensus 141 lyk--~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 141 VYK--GGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEE--CCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 997 499998887753 123335566766654
No 60
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.09 E-value=1.7e-05 Score=68.84 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=65.2
Q ss_pred HHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChh-----------HHHHHHhc---CCCC
Q 021440 131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSE-----------GWKVCSFY---NMDS 195 (312)
Q Consensus 131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~E-----------G~~~~~~Y---~~~~ 195 (312)
......++.||||..+||.+|+.. .+.+.++-++ +|.+..++.|... +.....+| .+..
T Consensus 45 ~~~~l~~~~lvnFWAsWCppCr~e------~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~ 118 (153)
T TIGR02738 45 RHANQDDYALVFFYQSTCPYCHQF------APVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV 118 (153)
T ss_pred hhhhcCCCEEEEEECCCChhHHHH------HHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC
Confidence 334455777999999999999998 4666666655 3555555555321 22223455 7789
Q ss_pred CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440 196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPF 229 (312)
Q Consensus 196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~f 229 (312)
+|+..|||+..|..+.+..|.++.+++.+.+.+.
T Consensus 119 iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 119 TPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 9999999986454555789999988887777654
No 61
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.08 E-value=1.9e-05 Score=64.21 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVL 200 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~ 200 (312)
..|.+.+..+. .+++++|+++++||.+|+.|.. .+.++..+ +..|+.++.+.. .+++.|++..+|+++
T Consensus 12 ~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~~------~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 12 KEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILDS------HLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLPTLL 81 (113)
T ss_pred HHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHHH------HHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCCEEE
Confidence 34555553221 2589999999999999999954 44444443 356777777644 889999999999999
Q ss_pred EEeCCCCeeEEEecCC
Q 021440 201 VIDPITGQKICSWCGM 216 (312)
Q Consensus 201 IIdprTGe~v~~~~G~ 216 (312)
++. .|+.+..+.|.
T Consensus 82 ~f~--~G~~v~~~~G~ 95 (113)
T cd02957 82 VYK--NGELIDNIVGF 95 (113)
T ss_pred EEE--CCEEEEEEecH
Confidence 997 49999888774
No 62
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.06 E-value=4.5e-05 Score=59.73 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=61.9
Q ss_pred HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS 212 (312)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~ 212 (312)
.+.++.+||+++++||..|+.+...+ ..+.+-+...+.|..++.+ +...+++.|++..+|++.++++. ......
T Consensus 15 ~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~-~~~~~~ 88 (103)
T cd03001 15 LNSDDVWLVEFYAPWCGHCKNLAPEW---KKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAG-KNSPQD 88 (103)
T ss_pred hcCCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCC-Ccceee
Confidence 35577899999999999999995432 2333334445666666554 45578899999999999999852 244566
Q ss_pred ecCCCChHHHHH
Q 021440 213 WCGMINPQPLGE 224 (312)
Q Consensus 213 ~~G~~~~~~fl~ 224 (312)
+.|..+.+.+++
T Consensus 89 ~~g~~~~~~l~~ 100 (103)
T cd03001 89 YQGGRTAKAIVS 100 (103)
T ss_pred cCCCCCHHHHHH
Confidence 888887776654
No 63
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.04 E-value=4.6e-05 Score=65.51 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=67.3
Q ss_pred HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------------HHHHHHhcCC
Q 021440 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------GWKVCSFYNM 193 (312)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------------G~~~~~~Y~~ 193 (312)
-++|+++|++.++||..|+...+.+ +....++-+.++.++.++.+... ...+.+.|.+
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l--~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYM--NELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHH--HHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 3579999999999999998864332 22233333445777777765432 2356788999
Q ss_pred CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440 194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~ 228 (312)
..+|++.|||+ .|+.+..+.|..+.+++.+.|.+
T Consensus 137 ~~~P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 137 GPLPTTFLIDK-DGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CCcCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHH
Confidence 99999999997 59999899999888887776654
No 64
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.01 E-value=2.6e-05 Score=63.92 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=58.9
Q ss_pred HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCC---------------------hhHHHH
Q 021440 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDT---------------------SEGWKV 187 (312)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds---------------------~EG~~~ 187 (312)
..+.-++|+++|++.++||..|+.+-. .+.++-++. +.++.++.+. .....+
T Consensus 19 ~~~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 92 (127)
T cd03010 19 TSADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRV 92 (127)
T ss_pred cHHHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchH
Confidence 334446899999999999999998643 233333322 4444443211 123356
Q ss_pred HHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHH
Q 021440 188 CSFYNMDSIPAVLVIDPITGQKICSWCGMINPQP 221 (312)
Q Consensus 188 ~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~ 221 (312)
+..|++..+|+..|||+ .|+.+.+|.|.++.+.
T Consensus 93 ~~~~~v~~~P~~~~ld~-~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 93 GIDLGVYGVPETFLIDG-DGIIRYKHVGPLTPEV 125 (127)
T ss_pred HHhcCCCCCCeEEEECC-CceEEEEEeccCChHh
Confidence 77889999999999997 5999999999887664
No 65
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.99 E-value=6.4e-05 Score=69.17 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=75.3
Q ss_pred ccccHHHHHHHHH-HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440 121 FNGSFEKAKDAAL-AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 121 ~~gsf~~A~~~Ak-~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i 199 (312)
-..+|++.....+ ..++.+||+++.+||..|+.|.... +++.+-++..+.|..+|.+ +...+++.|++..||++
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~---e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAW---ERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPTL 110 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCEE
Confidence 3567887665543 3468889999999999999997753 4555556666667766554 45678999999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFM 230 (312)
Q Consensus 200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl 230 (312)
.+++ .|+.+....|..+.+++.+-+.+-+
T Consensus 111 ~~f~--~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 111 LLFD--KGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred EEEE--CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 9999 4887766678777776655444433
No 66
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.97 E-value=6.6e-05 Score=61.46 Aligned_cols=77 Identities=9% Similarity=0.203 Sum_probs=59.4
Q ss_pred HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCC
Q 021440 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG 207 (312)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTG 207 (312)
..+.+++++++|+++.+||.+|+.|. +.+.++.++ +.-|+.++.+. -..+++.|.+...|+++++. .|
T Consensus 16 ~~~i~~~~~vvV~f~a~~c~~C~~~~------p~l~~la~~~~~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk--~G 85 (113)
T cd02989 16 FEIVKSSERVVCHFYHPEFFRCKIMD------KHLEILAKKHLETKFIKVNAEK--APFLVEKLNIKVLPTVILFK--NG 85 (113)
T ss_pred HHHHhCCCcEEEEEECCCCccHHHHH------HHHHHHHHHcCCCEEEEEEccc--CHHHHHHCCCccCCEEEEEE--CC
Confidence 33345679999999999999999995 445555543 36777776555 44688999999999999998 48
Q ss_pred eeEEEecCC
Q 021440 208 QKICSWCGM 216 (312)
Q Consensus 208 e~v~~~~G~ 216 (312)
+.+..+.|.
T Consensus 86 ~~v~~~~g~ 94 (113)
T cd02989 86 KTVDRIVGF 94 (113)
T ss_pred EEEEEEECc
Confidence 988887775
No 67
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.97 E-value=7.3e-05 Score=62.39 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=73.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcc--cc--hhhcccCCCHHHHHHh-hccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFS--SL--MLNRDTWGNEAVSQII-SVNFIFWQEYDDTSEGWKVCSFYNMDSIP 197 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~--c~--~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P 197 (312)
.+|++. =++.++.++|++...||.+ |+ ++.+.+ .+.-.+++ .....|..+|++. ...+++.|++.++|
T Consensus 17 ~nF~~~---v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~--~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~iP 89 (120)
T cd03065 17 KNYKQV---LKKYDVLCLLYHEPVESDKEAQKQFQMEELV--LELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDEED 89 (120)
T ss_pred hhHHHH---HHhCCceEEEEECCCcCChhhChhhcchhhH--HHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCcccc
Confidence 445544 4566779999999999987 88 553222 22334444 3468899997774 47899999999999
Q ss_pred eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440 198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFM 230 (312)
Q Consensus 198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl 230 (312)
+|.++. .|+.+. +.|..+.+.+++.|.+.+
T Consensus 90 Tl~lfk--~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFK--DDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEEE--CCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999997 598776 999999998888887655
No 68
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.93 E-value=0.00012 Score=59.88 Aligned_cols=92 Identities=10% Similarity=0.078 Sum_probs=66.2
Q ss_pred HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCC
Q 021440 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG 207 (312)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTG 207 (312)
..+.+.++-++|+++.+||.+|+.+.+ -+.++.. ...-|..++.+ +...++..|++...|+++|.+. |
T Consensus 16 ~~~l~~~~~vvv~f~a~wC~~C~~~~~------~l~~la~~~~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~--g 85 (113)
T cd02975 16 FKEMKNPVDLVVFSSKEGCQYCEVTKQ------LLEELSELSDKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQD--G 85 (113)
T ss_pred HHHhCCCeEEEEEeCCCCCCChHHHHH------HHHHHHHhcCceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeC--C
Confidence 344566778999999999999999854 2233332 33456667666 4568999999999999999984 3
Q ss_pred eeEE--EecCCCChHHHHHHHHHHHh
Q 021440 208 QKIC--SWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 208 e~v~--~~~G~~~~~~fl~~L~~fl~ 231 (312)
.... .+.|..+..+|.+.|...++
T Consensus 86 ~~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 86 GKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred eecceEEEEecCchHHHHHHHHHHHh
Confidence 2222 47788888888887777654
No 69
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.89 E-value=0.00019 Score=59.77 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCCh---------hHHHHHHhcCC
Q 021440 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS---------EGWKVCSFYNM 193 (312)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~---------EG~~~~~~Y~~ 193 (312)
+.++..+. -+.++..+|+|..+||.+|++| .|.+.++++++ .-++.++++.. +-..+...|++
T Consensus 12 t~~~~~~~-i~~~~~~iv~f~~~~Cp~C~~~------~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 12 TVVRALEA-LDKKETATFFIGRKTCPYCRKF------SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred CHHHHHHH-HHcCCcEEEEEECCCChhHHHH------hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 34443333 3568889999999999999999 57778888764 44666666632 33456677765
Q ss_pred C----CCCeEEEEeCCCCeeEEEecCC-CChHHHHHHHHHHH
Q 021440 194 D----SIPAVLVIDPITGQKICSWCGM-INPQPLGEMLLPFM 230 (312)
Q Consensus 194 ~----~~P~i~IIdprTGe~v~~~~G~-~~~~~fl~~L~~fl 230 (312)
. ..|+++++. .|+.+.++.|. .+.++ |.+|+
T Consensus 85 ~~~i~~~PT~v~~k--~Gk~v~~~~G~~~~~~~----l~~~~ 120 (122)
T TIGR01295 85 PTSFMGTPTFVHIT--DGKQVSVRCGSSTTAQE----LQDIA 120 (122)
T ss_pred cccCCCCCEEEEEe--CCeEEEEEeCCCCCHHH----HHHHh
Confidence 4 499999998 49999998885 34444 55554
No 70
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.87 E-value=3.7e-05 Score=59.74 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=58.5
Q ss_pred HHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEeccCCh--h-------------------
Q 021440 129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYDDTS--E------------------- 183 (312)
Q Consensus 129 ~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~ds~--E------------------- 183 (312)
...++..+|++||++..+||..|+... +.+.++.+ .++.++.++.+.. +
T Consensus 12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 12 VSLSDLKGKVVLVNFWASWCPPCRAEM------PELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred eehHHcCCCEEEEEeecccChhHHHHh------HHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 344555589999999999999998753 34444433 3566777776652 2
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCeeEEEecC
Q 021440 184 GWKVCSFYNMDSIPAVLVIDPITGQKICSWCG 215 (312)
Q Consensus 184 G~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G 215 (312)
+..+...|++..+|++.|||| .|+.+..+.|
T Consensus 86 ~~~~~~~~~~~~~P~~~l~d~-~g~v~~~~~g 116 (116)
T cd02966 86 DGELAKAYGVRGLPTTFLIDR-DGRIRARHVG 116 (116)
T ss_pred cchHHHhcCcCccceEEEECC-CCcEEEEecC
Confidence 256788889999999999998 5888877765
No 71
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.86 E-value=8.1e-05 Score=61.44 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=52.5
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc------cEEEEEeccCChh----------------------
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV------NFIFWQEYDDTSE---------------------- 183 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~------nFIfwq~~~ds~E---------------------- 183 (312)
+.-++|++||++..+||.+|+.+.. .+.++.++ ++.++.++.|..+
T Consensus 14 ~~~~gk~vll~Fwa~wC~~C~~~~p------~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T cd03009 14 SSLEGKTVGLYFSASWCPPCRAFTP------KLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRER 87 (131)
T ss_pred HHhCCcEEEEEEECCCChHHHHHhH------HHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHH
Confidence 3346899999999999999998753 44443322 4555555555332
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440 184 GWKVCSFYNMDSIPAVLVIDPITGQKICS 212 (312)
Q Consensus 184 G~~~~~~Y~~~~~P~i~IIdprTGe~v~~ 212 (312)
...++..|++..+|++.|||+ .|+.+..
T Consensus 88 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~ 115 (131)
T cd03009 88 RSRLNRTFKIEGIPTLIILDA-DGEVVTT 115 (131)
T ss_pred HHHHHHHcCCCCCCEEEEECC-CCCEEcc
Confidence 235777899999999999997 5886644
No 72
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.80 E-value=9.6e-05 Score=72.76 Aligned_cols=98 Identities=9% Similarity=0.141 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i 199 (312)
.+|++++ +++|.+||+++++||..|+.|...+ ..+.+.++ .++.|..++.+. ...+++.|++..||++
T Consensus 9 ~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 9 DNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSGYPTL 79 (462)
T ss_pred HHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCccccEE
Confidence 3455554 5688999999999999999997643 33444443 237888876654 4689999999999999
Q ss_pred EEEeCCCCee-EEEecCCCChHHHHHHHHHHHh
Q 021440 200 LVIDPITGQK-ICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 200 ~IIdprTGe~-v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
.++. .|+. +..+.|..+.+.+.+-+.+.+.
T Consensus 80 ~~~~--~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 80 KIFR--NGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEEe--CCccceeEecCCCCHHHHHHHHHHhcC
Confidence 9996 3666 7778998888887776666654
No 73
>PTZ00102 disulphide isomerase; Provisional
Probab=97.78 E-value=0.0001 Score=73.50 Aligned_cols=98 Identities=9% Similarity=0.174 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i 199 (312)
.+|++++ ++++.+||+++++||..|+.|...+- .+.+.++ .++.|..++.+ +...++..|++..||++
T Consensus 40 ~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~--~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 40 STFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDAT--EEMELAQEFGVRGYPTI 110 (477)
T ss_pred hhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECC--CCHHHHHhcCCCcccEE
Confidence 3455544 56789999999999999999976631 2333333 34788887654 45679999999999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
.++.. |..+ .+.|..+++.|++-|.+.+..
T Consensus 111 ~~~~~--g~~~-~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 111 KFFNK--GNPV-NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred EEEEC--CceE-EecCCCCHHHHHHHHHHhhCC
Confidence 99985 5555 789999999888877776543
No 74
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.77 E-value=0.00011 Score=57.72 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=62.5
Q ss_pred CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCC--CCCeEEEEeCCCCeeEEEe
Q 021440 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMD--SIPAVLVIDPITGQKICSW 213 (312)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~--~~P~i~IIdprTGe~v~~~ 213 (312)
+++++|.+.++||.+|..+...+ ++|.+-.+..+.|..+|.+. ...++..|.+. .+|++++++..+|.+....
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~---~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERF---KEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHH---HHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence 78999999999999999995433 34444445567888775554 56799999998 9999999997556665444
Q ss_pred cCCCChHHHHHHHHH
Q 021440 214 CGMINPQPLGEMLLP 228 (312)
Q Consensus 214 ~G~~~~~~fl~~L~~ 228 (312)
.|..+.+.+.+-|.+
T Consensus 87 ~~~~~~~~l~~fi~~ 101 (103)
T cd02982 87 EEELTAESLEEFVED 101 (103)
T ss_pred ccccCHHHHHHHHHh
Confidence 454566554444433
No 75
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.76 E-value=0.00015 Score=73.23 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=80.1
Q ss_pred HHhhhcCCCccc-cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHH
Q 021440 108 ILASLYRPPFHV-MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGW 185 (312)
Q Consensus 108 ~La~lfrPP~~l-~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~ 185 (312)
.-+++|-.+..+ +-..+|++.+.. +..+|.+||+++.+||..|+.|...+ +++.+-++. ++.|..++.|..+-.
T Consensus 343 ~~~dl~~~~~Vv~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~---eelA~~~~~~~v~~~kVdvD~~~~~ 418 (463)
T TIGR00424 343 AVADIFDSNNVVSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASY---LELAEKLAGSGVKVAKFRADGDQKE 418 (463)
T ss_pred ccccccCCCCeEECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCcEEEEEECCCCccH
Confidence 466888666544 456678887643 67899999999999999999997653 445444443 367887887765433
Q ss_pred HHHHhcCCCCCCeEEEEeCCCCeeEEEec-CCCChHHHHHHH
Q 021440 186 KVCSFYNMDSIPAVLVIDPITGQKICSWC-GMINPQPLGEML 226 (312)
Q Consensus 186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~-G~~~~~~fl~~L 226 (312)
-.++.|++..||+|.++... +.....+. |.-+.+.|+.-+
T Consensus 419 ~~~~~~~I~~~PTii~Fk~g-~~~~~~Y~~g~R~~e~L~~Fv 459 (463)
T TIGR00424 419 FAKQELQLGSFPTILFFPKH-SSRPIKYPSEKRDVDSLMSFV 459 (463)
T ss_pred HHHHHcCCCccceEEEEECC-CCCceeCCCCCCCHHHHHHHH
Confidence 34578999999999999863 23344565 467787765543
No 76
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.75 E-value=0.0002 Score=62.08 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEeccCChhHHHHHHhcCCCC---
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYDDTSEGWKVCSFYNMDS--- 195 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~ds~EG~~~~~~Y~~~~--- 195 (312)
.+|++.+. ...++.++|+++.+||.+|+.|.. .+.++.+ .++.|..+|.+... .+++.|++..
T Consensus 36 ~~f~~~l~--~~~~~~vvV~Fya~wC~~Ck~l~p------~l~~la~~~~~~~v~f~~VDvd~~~--~la~~~~V~~~~~ 105 (152)
T cd02962 36 KTLEEELE--RDKRVTWLVEFFTTWSPECVNFAP------VFAELSLKYNNNNLKFGKIDIGRFP--NVAEKFRVSTSPL 105 (152)
T ss_pred HHHHHHHH--hcCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHcccCCeEEEEEECCCCH--HHHHHcCceecCC
Confidence 34555443 245789999999999999999953 4444443 35889999877653 6788889877
Q ss_pred ---CCeEEEEeCCCCeeEEEecC
Q 021440 196 ---IPAVLVIDPITGQKICSWCG 215 (312)
Q Consensus 196 ---~P~i~IIdprTGe~v~~~~G 215 (312)
+|++.+.. .|+.+....|
T Consensus 106 v~~~PT~ilf~--~Gk~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQ--GGKEVARRPY 126 (152)
T ss_pred cCCCCEEEEEE--CCEEEEEEec
Confidence 99999997 5999888776
No 77
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.74 E-value=0.00013 Score=59.64 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=58.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPA 198 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~ 198 (312)
..+|++... ..+|.+||+++++||..|+.|... |. .+.+-+++ .+.|..++.+......+++.|++..||+
T Consensus 8 ~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~-~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 8 AASFNSALL---GSPSAWLVEFYASWCGHCRAFAPT-WK--KLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHH-HH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 345665554 445899999999999999999653 32 34444443 3667777766666788999999999999
Q ss_pred EEEEeCC
Q 021440 199 VLVIDPI 205 (312)
Q Consensus 199 i~IIdpr 205 (312)
+.++.+.
T Consensus 82 ~~lf~~~ 88 (114)
T cd02992 82 LRYFPPF 88 (114)
T ss_pred EEEECCC
Confidence 9999863
No 78
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.64 E-value=0.0003 Score=58.65 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=54.1
Q ss_pred cCCeEEEEeec-------CCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChh-----HHHHHHhcCCC-CCCe
Q 021440 135 QDKWLLVNLQS-------TKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSE-----GWKVCSFYNMD-SIPA 198 (312)
Q Consensus 135 ~~KwLLVniq~-------~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~E-----G~~~~~~Y~~~-~~P~ 198 (312)
++|+++|++++ +||.+|+++. +.|.++..+ +..|+.++++... ...+...|++. ..|+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~------P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT 93 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAE------PVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPT 93 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhc------hhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCE
Confidence 57999999999 9999999994 555555544 6789999987643 46788899998 9999
Q ss_pred EEEEeCCCCeeE
Q 021440 199 VLVIDPITGQKI 210 (312)
Q Consensus 199 i~IIdprTGe~v 210 (312)
+.++. +|+++
T Consensus 94 ~~~~~--~~~~l 103 (119)
T cd02952 94 LLRWK--TPQRL 103 (119)
T ss_pred EEEEc--CCcee
Confidence 99995 56554
No 79
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.64 E-value=0.00026 Score=72.59 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=62.0
Q ss_pred cCCeEEEEeecCCCcccchhhccc---------------------C----CCHHHHHHhhc-cEEEEEeccCChhHHHHH
Q 021440 135 QDKWLLVNLQSTKEFSSLMLNRDT---------------------W----GNEAVSQIISV-NFIFWQEYDDTSEGWKVC 188 (312)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDv---------------------w----~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~ 188 (312)
++|++||||.++||.+|+.+-..+ + ....+++++++ +|..|.+..|. ...++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~--~~~la 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN--GGTLA 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc--cHHHH
Confidence 689999999999999999862111 0 01223333332 22223333332 44678
Q ss_pred HhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440 189 SFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL 227 (312)
Q Consensus 189 ~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~ 227 (312)
+.|++..+|+++|||+ .|+.+....|.++.+++.+.|+
T Consensus 133 k~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHH
Confidence 8999999999999997 6999999999998877666555
No 80
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.60 E-value=0.0012 Score=54.54 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=77.7
Q ss_pred hHHHhhhcCCCccccccccHHHHHHHHHHcCCeEEEEeecCC--CcccchhhcccCCCHHHHHHhhc---cEEEEEeccC
Q 021440 106 HDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTK--EFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDD 180 (312)
Q Consensus 106 ~~~La~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~--~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~d 180 (312)
..+|.++-+=|- .-..+|++-. +.+..++|.++.+| |.+|..+ .+.+.++.++ .+.|+.++.+
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i------~P~leela~e~~~~v~f~kVdid 70 (111)
T cd02965 3 VARLQTRHGWPR--VDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDV------AVVLPELLKAFPGRFRAAVVGRA 70 (111)
T ss_pred hHHHHHhcCCcc--cccccHHHHH----hCCCCEEEEecCCcccCcchhhh------HhHHHHHHHHCCCcEEEEEEECC
Confidence 356666654332 3566788555 67788899999986 9999999 4666666665 3557788777
Q ss_pred ChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 181 TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 181 s~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
... .++..|++.+.|+++++. .|+.+....|..+.+++.
T Consensus 71 ~~~--~la~~f~V~sIPTli~fk--dGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 71 DEQ--ALAARFGVLRTPALLFFR--DGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CCH--HHHHHcCCCcCCEEEEEE--CCEEEEEEeCccCHHHHh
Confidence 654 899999999999999998 499999999988877764
No 81
>PTZ00102 disulphide isomerase; Provisional
Probab=97.56 E-value=0.00018 Score=71.63 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=73.6
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIP 197 (312)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P 197 (312)
+-..+|+++. .+.+|.+||+++++||..|+.|.. +|. .+.+..+ .+++|..++.+..+ ..+..|.+..+|
T Consensus 362 l~~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~P 433 (477)
T PTZ00102 362 VVGNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFP 433 (477)
T ss_pred ecccchHHHH---hcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccC
Confidence 3345676653 567899999999999999999954 333 2233333 35788888766533 457788899999
Q ss_pred eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440 198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
++.++++ .|+....+.|..+.+.+.+.|.+....
T Consensus 434 t~~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 434 TILFVKA-GERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred eEEEEEC-CCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 9999986 344445689999988877766665543
No 82
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.52 E-value=0.00045 Score=57.37 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh---hc---cEEEEEeccCCh------------------
Q 021440 127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII---SV---NFIFWQEYDDTS------------------ 182 (312)
Q Consensus 127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i---~~---nFIfwq~~~ds~------------------ 182 (312)
+-+..+.-++|.+||++..+||.+|+.+- +.+.++. ++ ++.++.++.+..
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 34445566789999999999999999863 2333222 22 343443433321
Q ss_pred -----hHHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440 183 -----EGWKVCSFYNMDSIPAVLVIDPITGQKICS 212 (312)
Q Consensus 183 -----EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~ 212 (312)
....+.+.|++..+|++.|||+ .|+.+..
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~-~G~iv~~ 115 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKP-DGDVVTT 115 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECC-CCCEEch
Confidence 2235667899999999999997 5876644
No 83
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.51 E-value=0.00027 Score=60.97 Aligned_cols=80 Identities=11% Similarity=0.187 Sum_probs=52.7
Q ss_pred HHHcCCeEEEEeecCCCcccchhhccc------C--------------------CC-HHHHHHhhccEEEE-EeccCChh
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDT------W--------------------GN-EAVSQIISVNFIFW-QEYDDTSE 183 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDv------w--------------------~~-~~V~~~i~~nFIfw-q~~~ds~E 183 (312)
+.=++|+++||+.++||.+|..+.-.+ + .+ +.+++|++++=+-| .+......
T Consensus 21 s~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~ 100 (146)
T cd03008 21 ARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEF 100 (146)
T ss_pred HHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchH
Confidence 344689999999999999999864222 0 11 23556665542222 11112223
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440 184 GWKVCSFYNMDSIPAVLVIDPITGQKICS 212 (312)
Q Consensus 184 G~~~~~~Y~~~~~P~i~IIdprTGe~v~~ 212 (312)
+..+...|.+..+|+..|||+ .|+.+..
T Consensus 101 ~~~l~~~y~v~~iPt~vlId~-~G~Vv~~ 128 (146)
T cd03008 101 RRELEAQFSVEELPTVVVLKP-DGDVLAA 128 (146)
T ss_pred HHHHHHHcCCCCCCEEEEECC-CCcEEee
Confidence 346778899999999999998 5888755
No 84
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.51 E-value=0.00078 Score=60.16 Aligned_cols=86 Identities=8% Similarity=0.037 Sum_probs=67.8
Q ss_pred EEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCCh-----------hHHHHHHhcCC--CCCCeEEEEeCC
Q 021440 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTS-----------EGWKVCSFYNM--DSIPAVLVIDPI 205 (312)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~-----------EG~~~~~~Y~~--~~~P~i~IIdpr 205 (312)
||+|..+||..|+.. .+.++++-++ .|.++.++.|.. .+..+..+|.+ ..+|+..|||+.
T Consensus 73 lV~FwaswCp~C~~e------~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~ 146 (181)
T PRK13728 73 VVLFMQGHCPYCHQF------DPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN 146 (181)
T ss_pred EEEEECCCCHhHHHH------HHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC
Confidence 788999999999998 4667777666 588888877733 23346668884 699999999974
Q ss_pred CCeeE-EEecCCCChHHHHHHHHHHHhh
Q 021440 206 TGQKI-CSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 206 TGe~v-~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
|+.+ .++.|.++.+++.+++.+.+..
T Consensus 147 -G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 147 -TLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred -CcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 7764 5789999999998888888765
No 85
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.46 E-value=0.0017 Score=58.39 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=58.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc--EEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN--FIFWQEYDDTSEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n--FIfwq~~~ds~EG~~~~~~Y~~~~~P~i 199 (312)
..+|.+....|. .++|++|.|+.+||.+|+.|+ +.+.++..++ .-|+.++++. .+..|++...|+|
T Consensus 89 ~~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m~------~~l~~LA~k~~~vkFvkI~ad~-----~~~~~~i~~lPTl 156 (192)
T cd02988 89 KPDYVREVTEAS-KDTWVVVHLYKDGIPLCRLLN------QHLSELARKFPDTKFVKIISTQ-----CIPNYPDKNLPTI 156 (192)
T ss_pred HHHHHHHHHhcC-CCCEEEEEEECCCCchHHHHH------HHHHHHHHHCCCCEEEEEEhHH-----hHhhCCCCCCCEE
Confidence 334554443322 346999999999999999995 4455555443 5677777653 3678999999999
Q ss_pred EEEeCCCCeeEEEecCC
Q 021440 200 LVIDPITGQKICSWCGM 216 (312)
Q Consensus 200 ~IIdprTGe~v~~~~G~ 216 (312)
+|.- .|+.+..+.|+
T Consensus 157 liyk--~G~~v~~ivG~ 171 (192)
T cd02988 157 LVYR--NGDIVKQFIGL 171 (192)
T ss_pred EEEE--CCEEEEEEeCc
Confidence 9997 59999887774
No 86
>PLN02309 5'-adenylylsulfate reductase
Probab=97.42 E-value=0.00089 Score=67.70 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=74.0
Q ss_pred hhhcCCCccc-cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhHHHH
Q 021440 110 ASLYRPPFHV-MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEGWKV 187 (312)
Q Consensus 110 a~lfrPP~~l-~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG~~~ 187 (312)
+++|.-+..+ +-..+|++.+. .+..+|.+||+++.+||..|+.|.... +.+.+-++ .++.|..++.+..+ ..+
T Consensus 339 ~dl~~~~~Vv~Lt~~nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~~---e~LA~~~~~~~V~f~kVD~d~~~-~~l 413 (457)
T PLN02309 339 ADIFNSQNVVALSRAGIENLLK-LENRKEPWLVVLYAPWCPFCQAMEASY---EELAEKLAGSGVKVAKFRADGDQ-KEF 413 (457)
T ss_pred ccccCCCCcEECCHHHHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCeEEEEEECCCcc-hHH
Confidence 5677433322 22334554333 357899999999999999999997652 23444343 45999999888332 356
Q ss_pred HH-hcCCCCCCeEEEEeCCCCeeEEEecC-CCChHHHHHHHHH
Q 021440 188 CS-FYNMDSIPAVLVIDPITGQKICSWCG-MINPQPLGEMLLP 228 (312)
Q Consensus 188 ~~-~Y~~~~~P~i~IIdprTGe~v~~~~G-~~~~~~fl~~L~~ 228 (312)
+. .|++..||+|.++.+.. .....+.| .-+.+.|+.-+..
T Consensus 414 a~~~~~I~~~PTil~f~~g~-~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 414 AKQELQLGSFPTILLFPKNS-SRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred HHhhCCCceeeEEEEEeCCC-CCeeecCCCCcCHHHHHHHHHH
Confidence 65 69999999999997632 23344654 5677776655543
No 87
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=97.41 E-value=0.00033 Score=52.13 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=41.8
Q ss_pred CCchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440 3 SESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (312)
Q Consensus 3 ~~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~ 49 (312)
..+..+.++|..|+.. ||-+.+=++.+|+.+|||++.|+..|-+..
T Consensus 7 ~~~~~q~~~v~~~~~~-Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk 52 (63)
T smart00804 7 TLSPEQQEMVQAFSAQ-TGMNAEYSQMCLEDNNWDYERALKNFTELK 52 (63)
T ss_pred CCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3466789999999999 999999999999999999999999998743
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.40 E-value=0.00084 Score=74.25 Aligned_cols=93 Identities=12% Similarity=0.142 Sum_probs=68.5
Q ss_pred cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc----cEEEEEecc---CC---h-------------------hHH
Q 021440 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEYD---DT---S-------------------EGW 185 (312)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~----nFIfwq~~~---ds---~-------------------EG~ 185 (312)
++|++|||+..+||.+|+... |.+.++.++ +|+++.+.. |. . ...
T Consensus 419 kGK~vll~FWAsWC~pC~~e~------P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVL------PDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHh------HHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 689999999999999999864 444444332 377776632 11 0 122
Q ss_pred HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440 186 KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP 234 (312)
Q Consensus 186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~ 234 (312)
.+...|.+..+|++.|||+ .|+.+.++.|....+++.+.|...+.-+.
T Consensus 493 ~~~~~~~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~~~~ 540 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQYYG 540 (1057)
T ss_pred HHHHhcCCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHHhhc
Confidence 4567888999999999997 59999999998888888777777776543
No 89
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.35 E-value=0.0019 Score=55.93 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=64.7
Q ss_pred cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCCh---------h------------------HHHH
Q 021440 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS---------E------------------GWKV 187 (312)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~---------E------------------G~~~ 187 (312)
.+||+||++..+||..|...-+.+ ++...+|-+.++.|+.++.+.. + ...+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l--~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRL--NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHH--HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 689999999999999997543222 1222223235677888776542 1 1134
Q ss_pred HHhcCCCCCCeEEEEeCCCCeeEEEe------c---CCCChHHHHHHHHHHHhhCCCC
Q 021440 188 CSFYNMDSIPAVLVIDPITGQKICSW------C---GMINPQPLGEMLLPFMDRSPRK 236 (312)
Q Consensus 188 ~~~Y~~~~~P~i~IIdprTGe~v~~~------~---G~~~~~~fl~~L~~fl~~~~~~ 236 (312)
++.|++...|++.|||+ .|+.+..+ . +..+.+++.+.|...|...+..
T Consensus 102 ~~~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 102 AKAYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HHHcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 45667778899999997 58877553 1 1245677888888877776654
No 90
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.33 E-value=0.00073 Score=62.69 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=60.5
Q ss_pred HHHcCCeEEEEeecCCCcccchhh-------cc----------cC----------CCHHHHHHhh-ccEEEEEecc-CCh
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLN-------RD----------TW----------GNEAVSQIIS-VNFIFWQEYD-DTS 182 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~ln-------RD----------vw----------~~~~V~~~i~-~nFIfwq~~~-ds~ 182 (312)
+.-++|++||++..+||..|...- ++ |- ..+++++|+. +.=+-|.+-. ...
T Consensus 95 sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~ 174 (236)
T PLN02399 95 SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDV 174 (236)
T ss_pred HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 444689999999999999996521 10 11 2246666663 2111122211 112
Q ss_pred hHHHHHHhcC-------------CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440 183 EGWKVCSFYN-------------MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 183 EG~~~~~~Y~-------------~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
.|...+..|+ +...|+..|||+ .|+.++++.|.++++++...|++.|.
T Consensus 175 ~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk-~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 175 NGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDK-NGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CcchhhHHHHHHHHhcCCccCCccccCceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 2322211111 233689999996 69999999999999988888887763
No 91
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.33 E-value=0.0015 Score=59.17 Aligned_cols=90 Identities=10% Similarity=0.123 Sum_probs=64.6
Q ss_pred cCCeEEEEee--cCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440 135 QDKWLLVNLQ--STKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI 210 (312)
Q Consensus 135 ~~KwLLVniq--~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v 210 (312)
.++-|++... .+||.+|+.|. +.+.++..+ +.-+.-+++|..+...++..|++..+|+++|++. |+.+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~------p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~--g~~~ 90 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETE------QLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE--GKDG 90 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHH------HHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeC--Ceee
Confidence 3455555444 28999999995 344444333 2334445667778999999999999999999984 7776
Q ss_pred E-EecCCCChHHHHHHHHHHHhh
Q 021440 211 C-SWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 211 ~-~~~G~~~~~~fl~~L~~fl~~ 232 (312)
. ++.|..+.++|.+.|...+..
T Consensus 91 ~~~~~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 91 GIRYTGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred EEEEeecCCHHHHHHHHHHHHHh
Confidence 4 789988888887777777644
No 92
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.32 E-value=0.002 Score=60.21 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=76.8
Q ss_pred CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCCh---h------HHHHHHhcCCCCCCeEEEEeCC
Q 021440 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS---E------GWKVCSFYNMDSIPAVLVIDPI 205 (312)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~---E------G~~~~~~Y~~~~~P~i~IIdpr 205 (312)
++|=||+++...|.-|+.+ .+-|+.|-+++ |-.+.+++|-. + ....+...++..+|.+.+|+|.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~------aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~ 216 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQL------AQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK 216 (248)
T ss_pred hcceEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence 4799999999999999999 57888888775 88888887741 1 1123367888899999999999
Q ss_pred CCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440 206 TGQKICSWCGMINPQPLGEMLLPFMDRSP 234 (312)
Q Consensus 206 TGe~v~~~~G~~~~~~fl~~L~~fl~~~~ 234 (312)
||+..-+-.|.++.+++.+++......+.
T Consensus 217 t~~~~pv~~G~iS~deL~~Ri~~v~t~~~ 245 (248)
T PRK13703 217 SGSVRPLSYGFITQDDLAKRFLNVSTDFK 245 (248)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHhccC
Confidence 99988788899999999999999887764
No 93
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.30 E-value=0.0029 Score=59.42 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=77.9
Q ss_pred CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCCh--hH-------HHHHHhcCCCCCCeEEEEeCC
Q 021440 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS--EG-------WKVCSFYNMDSIPAVLVIDPI 205 (312)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~--EG-------~~~~~~Y~~~~~P~i~IIdpr 205 (312)
++|=||+++...|.-|+.+ .+-|+.|-+++ |-...+++|-. .| ...++.+++..+|.+.+|+|.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~------apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKM------APVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred hceeEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 4799999999999999999 57788888775 77888887753 11 335677888999999999999
Q ss_pred CCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440 206 TGQKICSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 206 TGe~v~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
|++..-+-.|.++.+++++++...+..|
T Consensus 224 t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 9988777889999999999999998877
No 94
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.29 E-value=0.0014 Score=50.83 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=44.0
Q ss_pred CCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCC-----------------------hhHHHHHHh
Q 021440 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDT-----------------------SEGWKVCSF 190 (312)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds-----------------------~EG~~~~~~ 190 (312)
+|.++|++.++||.+|...-..+ .++.+-++ .+|.|..++.|. .....+.+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l---~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKL---KELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 68999999999999998865433 12223333 344444444332 223467788
Q ss_pred cCCCCCCeEEEEeCCCCe
Q 021440 191 YNMDSIPAVLVIDPITGQ 208 (312)
Q Consensus 191 Y~~~~~P~i~IIdprTGe 208 (312)
|.+..+|+++|||+ .|+
T Consensus 78 ~~i~~iP~~~lld~-~G~ 94 (95)
T PF13905_consen 78 YGINGIPTLVLLDP-DGK 94 (95)
T ss_dssp TT-TSSSEEEEEET-TSB
T ss_pred CCCCcCCEEEEECC-CCC
Confidence 88999999999997 575
No 95
>PTZ00062 glutaredoxin; Provisional
Probab=97.26 E-value=0.0028 Score=57.62 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440 126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId 203 (312)
++-.+..+.....++++++++||.+|+.|+ +.+.++..+ ++.|+.++.+ |.+...|+++++.
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~------~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLM------DVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQ 70 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHH------HHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEE
Confidence 333333343447799999999999999994 455555554 6899999877 9999999999997
Q ss_pred CCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440 204 PITGQKICSWCGMINPQPLGEMLLPFM 230 (312)
Q Consensus 204 prTGe~v~~~~G~~~~~~fl~~L~~fl 230 (312)
.|+.+.++.|. +|.++...|....
T Consensus 71 --~g~~i~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 71 --NSQLINSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred --CCEEEeeeeCC-CHHHHHHHHHHHc
Confidence 59999998885 4555555554443
No 96
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.21 E-value=0.0038 Score=56.15 Aligned_cols=93 Identities=10% Similarity=0.118 Sum_probs=60.2
Q ss_pred HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEecc--------CC-hhHHHHHHhcCC------
Q 021440 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYD--------DT-SEGWKVCSFYNM------ 193 (312)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~--------ds-~EG~~~~~~Y~~------ 193 (312)
.-++|.+||++..+||.+|..-. +.+.++.+ .+|.++.++. ++ .+..+++..|.+
T Consensus 36 ~~kGkvvlv~fwAswC~~C~~e~------p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~ 109 (199)
T PTZ00056 36 SLKNKVLMITNSASKCGLTKKHV------DQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFE 109 (199)
T ss_pred HhCCCEEEEEEECCCCCChHHHH------HHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeee
Confidence 33689999999999999998521 22222222 3466666653 22 234455544432
Q ss_pred ------------------------------CCCC---eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440 194 ------------------------------DSIP---AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 194 ------------------------------~~~P---~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
..+| +..|||+ .|+.+..+.|..+++++...|...|.+
T Consensus 110 d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~-~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 110 PIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK-SGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred eeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1122 4678895 699998899988888888888777755
No 97
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0021 Score=59.98 Aligned_cols=95 Identities=15% Similarity=0.189 Sum_probs=77.2
Q ss_pred HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCC
Q 021440 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG 207 (312)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTG 207 (312)
+.++.-.|.++|++...||.+|++. .|-+.++-+. .+||+.+|+|. -+.-+..|.+...|++++.- +|
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~I------aP~Fs~lankYp~aVFlkVdVd~--c~~taa~~gV~amPTFiff~--ng 84 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRI------APIFSDLANKYPGAVFLKVDVDE--CRGTAATNGVNAMPTFIFFR--NG 84 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhh------hhHHHHhhhhCcccEEEEEeHHH--hhchhhhcCcccCceEEEEe--cC
Confidence 4467778999999999999999998 5777777776 49999997764 44567889999999998886 58
Q ss_pred eeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021440 208 QKICSWCGMINPQPLGEMLLPFMDRSPR 235 (312)
Q Consensus 208 e~v~~~~G~~~~~~fl~~L~~fl~~~~~ 235 (312)
.++.++.|. ++..+-+.+.++++.-.-
T Consensus 85 ~kid~~qGA-d~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 85 VKIDQIQGA-DASGLEEKVAKYASTSAA 111 (288)
T ss_pred eEeeeecCC-CHHHHHHHHHHHhccCcc
Confidence 999999985 777788888888766543
No 98
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.13 E-value=0.0035 Score=51.76 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=55.6
Q ss_pred HcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-------------------HHHHHHhcCC
Q 021440 134 AQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-------------------GWKVCSFYNM 193 (312)
Q Consensus 134 ~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-------------------G~~~~~~Y~~ 193 (312)
-.+|++||++. ..||..|...-+.+ ++...++-..++.++.+..++.+ ...+...|.+
T Consensus 21 ~~gk~~ll~f~~~~~cp~C~~~~~~l--~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 98 (140)
T cd03017 21 LRGKPVVLYFYPKDDTPGCTKEACDF--RDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGV 98 (140)
T ss_pred hCCCcEEEEEeCCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCC
Confidence 35899999998 57888897643332 11222222334444544444332 1245556666
Q ss_pred CCC---------CeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440 194 DSI---------PAVLVIDPITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 194 ~~~---------P~i~IIdprTGe~v~~~~G~~~~~~fl~~L 226 (312)
..+ |++.|||+ +|+.+.+|.|......+-+.|
T Consensus 99 ~~~~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 99 WGEKKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccccccCCcceeEEEECC-CCEEEEEEecCCccchHHHHh
Confidence 655 89999997 699999999987555554443
No 99
>PHA02125 thioredoxin-like protein
Probab=97.11 E-value=0.0024 Score=48.19 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=50.6
Q ss_pred EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCC-C
Q 021440 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI-N 218 (312)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~-~ 218 (312)
+|+++.+||.+|+.+.+-+ .+ + .|.+..++ ..+...++..|++..+|++. .|+.+..+.|.. +
T Consensus 2 iv~f~a~wC~~Ck~~~~~l------~~-~--~~~~~~vd--~~~~~~l~~~~~v~~~PT~~-----~g~~~~~~~G~~~~ 65 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPML------AN-V--EYTYVDVD--TDEGVELTAKHHIRSLPTLV-----NTSTLDRFTGVPRN 65 (75)
T ss_pred EEEEECCCCHhHHHHHHHH------HH-H--hheEEeee--CCCCHHHHHHcCCceeCeEE-----CCEEEEEEeCCCCc
Confidence 7899999999999997642 11 1 25555554 44567899999999999986 377777788862 3
Q ss_pred hHHHHHHH
Q 021440 219 PQPLGEML 226 (312)
Q Consensus 219 ~~~fl~~L 226 (312)
..++.+.|
T Consensus 66 ~~~l~~~~ 73 (75)
T PHA02125 66 VAELKEKL 73 (75)
T ss_pred HHHHHHHh
Confidence 35555444
No 100
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.11 E-value=0.00082 Score=57.29 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=21.3
Q ss_pred eEEEEeCCCCeeEEEecCCCChHHHHH
Q 021440 198 AVLVIDPITGQKICSWCGMINPQPLGE 224 (312)
Q Consensus 198 ~i~IIdprTGe~v~~~~G~~~~~~fl~ 224 (312)
+..|||+ .|+.+++|.|.++++++..
T Consensus 125 ttflId~-~G~i~~~~~G~~~~~~l~~ 150 (152)
T cd00340 125 TKFLVDR-DGEVVKRFAPTTDPEELEK 150 (152)
T ss_pred EEEEECC-CCcEEEEECCCCCHHHHHh
Confidence 6899996 6999999999988876543
No 101
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.10 E-value=0.0045 Score=56.58 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=70.9
Q ss_pred cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCCh---------hHHHHHHhcCCCCCCeEEEEeC
Q 021440 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS---------EGWKVCSFYNMDSIPAVLVIDP 204 (312)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~---------EG~~~~~~Y~~~~~P~i~IIdp 204 (312)
.++|=||++..++|.-|+.+ .+-|+.|.+++ |-...++.|.. .....+..+++..+|.+.+|+|
T Consensus 119 a~~~gL~~F~~~~C~~C~~~------~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~ 192 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQ------APILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNP 192 (215)
T ss_pred hhCeEEEEEEcCCCchhHHH------HHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEEC
Confidence 46999999999999999999 47778888764 77888877731 1234667889999999999999
Q ss_pred CCCeeEEEecCCCChHHHHHHH
Q 021440 205 ITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 205 rTGe~v~~~~G~~~~~~fl~~L 226 (312)
.|++.+-+-.|.++.+++++++
T Consensus 193 ~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 193 NTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCCeEEEEeeecCCHHHHHHhh
Confidence 9888877789999999998875
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.07 E-value=0.0048 Score=54.80 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=55.3
Q ss_pred HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCCh------------------hHHHHHHhcC
Q 021440 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTS------------------EGWKVCSFYN 192 (312)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~------------------EG~~~~~~Y~ 192 (312)
.++|.++|++.++||..|+..-. .+.++.++ ++|+.. .++. ....+...|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp------~l~~~~~~~~~~vv~Is--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~ 143 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFP------IIKSIARAEETDVVMIS--DGTPAEHRRFLKDHELGGERYVVSAEIGMAFQ 143 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHH------HHHHHHHhcCCcEEEEe--CCCHHHHHHHHHhcCCCcceeechhHHHHhcc
Confidence 36799999999999999987632 22222221 233332 1111 1235667788
Q ss_pred CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440 193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
+...|+..|||+ .|+.+. .|.+...+-++.+.+.++.
T Consensus 144 v~~~P~~~lID~-~G~I~~--~g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 144 VGKIPYGVLLDQ-DGKIRA--KGLTNTREHLESLLEADRE 180 (189)
T ss_pred CCccceEEEECC-CCeEEE--ccCCCCHHHHHHHHHHHHc
Confidence 899999999997 587764 4655554556665555544
No 103
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.06 E-value=0.0046 Score=46.29 Aligned_cols=75 Identities=15% Similarity=0.090 Sum_probs=53.8
Q ss_pred EEeecCCCcccchhhcccCCCHHHHHHh---hccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCC
Q 021440 141 VNLQSTKEFSSLMLNRDTWGNEAVSQII---SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI 217 (312)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i---~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~ 217 (312)
+-++.+||..|+.+.. .+.++. +.++-+..++.+ +....++.|++..+|++.+ + |+ ..+.|..
T Consensus 4 ~~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~-~---g~--~~~~G~~ 69 (82)
T TIGR00411 4 ELFTSPTCPYCPAAKR------VVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI-N---GD--VEFIGAP 69 (82)
T ss_pred EEEECCCCcchHHHHH------HHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE-C---CE--EEEecCC
Confidence 3456789999999954 333333 344667777765 3456778899999999975 4 54 2688988
Q ss_pred ChHHHHHHHHHH
Q 021440 218 NPQPLGEMLLPF 229 (312)
Q Consensus 218 ~~~~fl~~L~~f 229 (312)
+++++.+.|...
T Consensus 70 ~~~~l~~~l~~~ 81 (82)
T TIGR00411 70 TKEELVEAIKKR 81 (82)
T ss_pred CHHHHHHHHHhh
Confidence 999888877764
No 104
>PLN02412 probable glutathione peroxidase
Probab=97.03 E-value=0.0031 Score=54.99 Aligned_cols=95 Identities=11% Similarity=0.097 Sum_probs=58.0
Q ss_pred cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--------h-hHHHH-HHhcC------------
Q 021440 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--------S-EGWKV-CSFYN------------ 192 (312)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--------~-EG~~~-~~~Y~------------ 192 (312)
.+|.+||++..+||.+|..--..+ ++--.+|=..+|.++.++.++ . +-.++ +..|+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l--~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~ 105 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKEL--NVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN 105 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHH--HHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence 579999999999999998521111 112222223346666665431 1 11111 12211
Q ss_pred ----------------------CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440 193 ----------------------MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 193 ----------------------~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
+...|+..|||+ .|+.++.|.|.++++++...|...|++
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 222478888886 588888888888888887777777653
No 105
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=96.99 E-value=0.0005 Score=48.99 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=36.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE 50 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~ 50 (312)
+++|.+|+.. ||-+.+-|+++|+.++||++.|+..|.....
T Consensus 1 q~mv~~~s~~-Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~ 41 (51)
T PF03943_consen 1 QEMVQQFSQQ-TGMNLEWSQKCLEENNWDYERALQNFEELKA 41 (51)
T ss_dssp HHHHHHHHHH-CSS-CCHHHHHHHHTTT-CCHHHHHHHHCCC
T ss_pred CHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4689999999 9999999999999999999999999998654
No 106
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.96 E-value=0.0031 Score=62.07 Aligned_cols=98 Identities=12% Similarity=0.174 Sum_probs=70.9
Q ss_pred ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440 121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIP 197 (312)
Q Consensus 121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P 197 (312)
...+|++.. ...+|-+||+++.+||..|+.|...+ ..+.+.++. ++.|..++.+..+.. . |.+..+|
T Consensus 352 ~~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~i~~~~id~~~n~~~---~-~~i~~~P 421 (462)
T TIGR01130 352 VGKNFDEIV---LDETKDVLVEFYAPWCGHCKNLAPIY---EELAEKYKDAESDVVIAKMDATANDVP---P-FEVEGFP 421 (462)
T ss_pred eCcCHHHHh---ccCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhhcCCCcEEEEEEECCCCccC---C-CCccccC
Confidence 345676654 45689999999999999999997644 456666665 788999988765533 3 8899999
Q ss_pred eEEEEeCCCCee--EEEecCCCChHHHHHHHHHHHhhCC
Q 021440 198 AVLVIDPITGQK--ICSWCGMINPQPLGEMLLPFMDRSP 234 (312)
Q Consensus 198 ~i~IIdprTGe~--v~~~~G~~~~~~fl~~L~~fl~~~~ 234 (312)
++.+... |.+ ...+.|..+.+.++ +||+++.
T Consensus 422 t~~~~~~--~~~~~~~~~~g~~~~~~l~----~~l~~~~ 454 (462)
T TIGR01130 422 TIKFVPA--GKKSEPVPYDGDRTLEDFS----KFIAKHA 454 (462)
T ss_pred EEEEEeC--CCCcCceEecCcCCHHHHH----HHHHhcC
Confidence 9999974 433 24577877766644 5555544
No 107
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.95 E-value=0.0045 Score=49.34 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=43.9
Q ss_pred cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hhHHHHH-----------------HhcCCCCC
Q 021440 135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SEGWKVC-----------------SFYNMDSI 196 (312)
Q Consensus 135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~EG~~~~-----------------~~Y~~~~~ 196 (312)
++|+++|++.++||..|+.....+ ..+.+.....+.++.+..++ .+..+++ ..|.+...
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l---~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVI---RSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHH---HHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 589999999999999999885432 12222223345444443222 2333343 45555667
Q ss_pred CeEEEEeCCCCeeE
Q 021440 197 PAVLVIDPITGQKI 210 (312)
Q Consensus 197 P~i~IIdprTGe~v 210 (312)
|+..|||+ .|+.+
T Consensus 97 P~~~vid~-~G~v~ 109 (114)
T cd02967 97 PYAVLLDE-AGVIA 109 (114)
T ss_pred CeEEEECC-CCeEE
Confidence 88888886 47654
No 108
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.91 E-value=0.0047 Score=51.34 Aligned_cols=92 Identities=15% Similarity=0.226 Sum_probs=64.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEeec--CCCc---ccchhhcccCCCHHHHHHhhccEEEEEeccCC---hhHHHHHHhcCC
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQS--TKEF---SSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT---SEGWKVCSFYNM 193 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~--~~~f---~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds---~EG~~~~~~Y~~ 193 (312)
..+|++++ ++++.+||-++. +||. .|..|-... ..- ....++-+++.+. .+...+++.|.+
T Consensus 8 ~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~------~~a-a~~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 8 TVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESS------ASA-TDDLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred hhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHH------Hhh-cCceEEEEEecccccchhhHHHHHHhCC
Confidence 34566644 678999999999 7776 566663211 111 1248899998875 556889999999
Q ss_pred C--CCCeEEEEeCCCCe--eEEEecCC-CChHHHHHHH
Q 021440 194 D--SIPAVLVIDPITGQ--KICSWCGM-INPQPLGEML 226 (312)
Q Consensus 194 ~--~~P~i~IIdprTGe--~v~~~~G~-~~~~~fl~~L 226 (312)
. .||+|.+... |+ ....+.|. .+.+.++.-|
T Consensus 77 ~~~gyPTl~lF~~--g~~~~~~~Y~G~~r~~~~lv~~v 112 (116)
T cd03007 77 DKESYPVIYLFHG--GDFENPVPYSGADVTVDALQRFL 112 (116)
T ss_pred CcCCCCEEEEEeC--CCcCCCccCCCCcccHHHHHHHH
Confidence 8 9999999984 53 33568886 8888766544
No 109
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.84 E-value=0.0048 Score=50.67 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=52.5
Q ss_pred HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEecc------CChh-------------------H
Q 021440 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYD------DTSE-------------------G 184 (312)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~------ds~E-------------------G 184 (312)
..+.-++|+++|++.++||..|+..-..+ ++-..++-..++.++.++. ++.+ .
T Consensus 17 ~l~~~~gk~vvl~F~a~~C~~C~~~~p~l--~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~ 94 (126)
T cd03012 17 SLAQLRGKVVLLDFWTYCCINCLHTLPYL--TDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDND 94 (126)
T ss_pred CHHHhCCCEEEEEEECCCCccHHHHHHHH--HHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCc
Confidence 33444789999999999999998763322 1111111123455555543 1111 1
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCCeeEEEecCC
Q 021440 185 WKVCSFYNMDSIPAVLVIDPITGQKICSWCGM 216 (312)
Q Consensus 185 ~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~ 216 (312)
..+...|.+..+|+..|||+ .|+.+..+.|.
T Consensus 95 ~~~~~~~~v~~~P~~~vid~-~G~v~~~~~G~ 125 (126)
T cd03012 95 YATWRAYGNQYWPALYLIDP-TGNVRHVHFGE 125 (126)
T ss_pred hHHHHHhCCCcCCeEEEECC-CCcEEEEEecC
Confidence 23445677788999999997 59988887763
No 110
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0082 Score=57.33 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=72.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI 202 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II 202 (312)
-+|++.+.++. ..+++||+|..+||.+|..|--++ +.+..=.+..|++-.+|.|.. ..++..+++.+.|++..+
T Consensus 31 anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~L---ekla~~~~G~f~LakvN~D~~--p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 31 ANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTL---EKLAAEYKGKFKLAKVNCDAE--PMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred hHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHH---HHHHHHhCCceEEEEecCCcc--hhHHHHhCcCcCCeEEEe
Confidence 35677666543 346999999999999999996443 334444456799999987764 457888999999988777
Q ss_pred eCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440 203 DPITGQKICSWCGMINPQPLGEMLLPFM 230 (312)
Q Consensus 203 dprTGe~v~~~~G~~~~~~fl~~L~~fl 230 (312)
- .|+-|-.+.|...-+.+.+.|.+++
T Consensus 105 ~--dGqpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 105 K--DGQPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred e--CCcCccccCCCCcHHHHHHHHHHhc
Confidence 5 4888888888765555444444444
No 111
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.62 E-value=0.0099 Score=51.70 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=59.1
Q ss_pred HHHcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH--------------------------
Q 021440 132 ALAQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------- 184 (312)
Q Consensus 132 Ak~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------------- 184 (312)
+.-++||++|++. ..||..|..-.+.+ +....+|-+.++.++.++.|..+.
T Consensus 25 ~~~~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 102 (173)
T cd03015 25 SDYKGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPK 102 (173)
T ss_pred HHhCCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCc
Confidence 3345799999999 78999999864443 233344444567777776665421
Q ss_pred HHHHHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHH
Q 021440 185 WKVCSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLP 228 (312)
Q Consensus 185 ~~~~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~ 228 (312)
..+++.|.+. ..|+++|||+ .|..+.++.+.. +.++++..|..
T Consensus 103 ~~~~~~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 103 KKISRDYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred hhHHHHhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 1233455543 4689999997 588888875543 34555555543
No 112
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.59 E-value=0.024 Score=48.01 Aligned_cols=94 Identities=11% Similarity=0.138 Sum_probs=52.6
Q ss_pred HcCCeEEEEeecC-CCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------------------HHHHHhcCC
Q 021440 134 AQDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------WKVCSFYNM 193 (312)
Q Consensus 134 ~~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------~~~~~~Y~~ 193 (312)
-++|.+||++... +|..|....+.+ +....++-++++.++.++.|+.+. ..+++.|.+
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l--~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 105 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGL--RDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGV 105 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCC
Confidence 3567888888865 567786543221 222222333345555555544321 224445554
Q ss_pred CC------------CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440 194 DS------------IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 194 ~~------------~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
.. .|+..|||+ .|..++.|.|+... +.++.+..++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~-~~~~~~~~~~~ 153 (154)
T PRK09437 106 WGEKKFMGKTYDGIHRISFLIDA-DGKIEHVFDKFKTS-NHHDVVLDYLK 153 (154)
T ss_pred CcccccccccccCcceEEEEECC-CCEEEEEEcCCCcc-hhHHHHHHHHh
Confidence 22 277889997 59999999987544 34555655553
No 113
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.00011 Score=70.84 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=80.1
Q ss_pred HHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC-----C-hhHHHHHHhcCCC--CCCeEEEE
Q 021440 131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD-----T-SEGWKVCSFYNMD--SIPAVLVI 202 (312)
Q Consensus 131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d-----s-~EG~~~~~~Y~~~--~~P~i~II 202 (312)
.++-..+|+.|.++.+-++.|++|++..|..+.++.++.+++.+|+++.. + -++++...+|... ..++..|+
T Consensus 6 ~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~~~~a~sp~~~~re~l~~~~~~~d~~~~s~~ 85 (356)
T KOG1364|consen 6 QRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSSSSAAPSPIEPQREVLFDPLGIMDQSTSSIL 85 (356)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCCcccCCCcccccceeeeccccccccCccccc
Confidence 45667899999999999999999999999999999999999999999884 3 3566777777776 89999999
Q ss_pred eCCCCeeEEEec--CCCChHHHHHHHHHHHhhCCCC
Q 021440 203 DPITGQKICSWC--GMINPQPLGEMLLPFMDRSPRK 236 (312)
Q Consensus 203 dprTGe~v~~~~--G~~~~~~fl~~L~~fl~~~~~~ 236 (312)
+|++|..-..|. +......|+.--...+.+++++
T Consensus 86 ~p~~~~~~~s~~~~~~srL~slfrpp~~i~~~gsld 121 (356)
T KOG1364|consen 86 DPSENQDDESEHASSQSRLASLFRPPTDILSHGSLD 121 (356)
T ss_pred CcccccchhhhhccccchhhhhcCCCcchhhcCChh
Confidence 999987655443 2222333333333344555555
No 114
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.48 E-value=0.032 Score=47.46 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=59.9
Q ss_pred HHHHHcCCeEEEEeecCCCcccchhhc------------c--cC-------------CCHHHHHHhhc----cEEEEE-e
Q 021440 130 DAALAQDKWLLVNLQSTKEFSSLMLNR------------D--TW-------------GNEAVSQIISV----NFIFWQ-E 177 (312)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnR------------D--vw-------------~~~~V~~~i~~----nFIfwq-~ 177 (312)
..+.-++|++||++..+||..|..--. + ++ +.+.+++|+++ +|-++. .
T Consensus 16 ~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~ 95 (153)
T TIGR02540 16 SLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKI 95 (153)
T ss_pred cHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceE
Confidence 344557899999999999999965211 0 00 11456777753 232221 0
Q ss_pred cc---CChhHHHHHHhcCCCCCCe----EEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440 178 YD---DTSEGWKVCSFYNMDSIPA----VLVIDPITGQKICSWCGMINPQPLGEMLLPF 229 (312)
Q Consensus 178 ~~---ds~EG~~~~~~Y~~~~~P~----i~IIdprTGe~v~~~~G~~~~~~fl~~L~~f 229 (312)
++ +...+..+.. .+...+|. ..|||+ .|+.+..|.|.++++++...|.+.
T Consensus 96 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~tflID~-~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 96 KILGSEAEPAFRFLV-DSSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred ecCCCCCCcHHHHHH-hcCCCCCCCccEEEEEcC-CCcEEEEECCCCCHHHHHHHHHHh
Confidence 00 1111222221 12245787 999996 799999999999999888777654
No 115
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.48 E-value=0.013 Score=52.00 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=62.4
Q ss_pred HcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-----------------------HHHHH
Q 021440 134 AQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-----------------------WKVCS 189 (312)
Q Consensus 134 ~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-----------------------~~~~~ 189 (312)
-.+||++|+++ ..||+.|..--..+ ++...+|-+.++.++.++.|+++. ..++.
T Consensus 29 ~~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~ 106 (187)
T TIGR03137 29 VKGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTR 106 (187)
T ss_pred HCCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHH
Confidence 36899999999 89999998754433 233344545677777777776432 13445
Q ss_pred hcCCC------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHH--HHHHhhC
Q 021440 190 FYNMD------SIPAVLVIDPITGQKICSWCGM----INPQPLGEML--LPFMDRS 233 (312)
Q Consensus 190 ~Y~~~------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L--~~fl~~~ 233 (312)
.|.+. ..|+..|||+ .|.....|.+. ...+++++.| .+|.+++
T Consensus 107 ~~gv~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 161 (187)
T TIGR03137 107 NFGVLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKIKAAQYVAAH 161 (187)
T ss_pred HhCCcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhc
Confidence 56553 3589999997 58887776432 2566666655 3344444
No 116
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.48 E-value=0.015 Score=44.10 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=48.0
Q ss_pred EEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCC
Q 021440 141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI 217 (312)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~ 217 (312)
|.|+++||..|+.+. +.+.+++.+ .+.|..++ ..+ -+..|++...|+|+| .|+.+ +.|..
T Consensus 3 i~~~a~~C~~C~~~~------~~~~~~~~e~~~~~~~~~v~--~~~---~a~~~~v~~vPti~i----~G~~~--~~G~~ 65 (76)
T TIGR00412 3 IQIYGTGCANCQMTE------KNVKKAVEELGIDAEFEKVT--DMN---EILEAGVTATPGVAV----DGELV--IMGKI 65 (76)
T ss_pred EEEECCCCcCHHHHH------HHHHHHHHHcCCCeEEEEeC--CHH---HHHHcCCCcCCEEEE----CCEEE--EEecc
Confidence 778899999999994 456666654 36676665 222 256799999999998 47766 77854
Q ss_pred -ChHHHHHHH
Q 021440 218 -NPQPLGEML 226 (312)
Q Consensus 218 -~~~~fl~~L 226 (312)
+.+++.+.|
T Consensus 66 ~~~~~l~~~l 75 (76)
T TIGR00412 66 PSKEEIKEIL 75 (76)
T ss_pred CCHHHHHHHh
Confidence 445554443
No 117
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.46 E-value=0.0062 Score=40.12 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=31.0
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 021440 8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILL 44 (312)
Q Consensus 8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~l 44 (312)
.+++|.+.+++ |-+.+.|++.|.+++||++.|++.
T Consensus 2 ~~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 2 DEEKVQQLMEM--GFSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHh
Confidence 35789999999 899999999999999999999974
No 118
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.44 E-value=0.0099 Score=49.64 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=52.0
Q ss_pred HcCCeEEEEeecC-CCcccchhhcccCCCHHHHHHh-hccEEEEEeccCCh-------------------hHHHHHHhcC
Q 021440 134 AQDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTS-------------------EGWKVCSFYN 192 (312)
Q Consensus 134 ~~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~-------------------EG~~~~~~Y~ 192 (312)
-.+|+++|++..+ ||.+|+.--..+ ..+.+.. ..++.+..+..+.. ....+...|.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l---~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 102 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYL---NELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALG 102 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHH---HHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTT
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhH---HhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhC
Confidence 5789999999999 999998654210 1112222 22243333333321 2335666777
Q ss_pred CC---------CCCeEEEEeCCCCeeEEEecCCCC
Q 021440 193 MD---------SIPAVLVIDPITGQKICSWCGMIN 218 (312)
Q Consensus 193 ~~---------~~P~i~IIdprTGe~v~~~~G~~~ 218 (312)
+. .+|+++|||+ .|+.+....|..+
T Consensus 103 ~~~~~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 103 VTIMEDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP 136 (146)
T ss_dssp CEEECCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred CccccccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence 66 8999999996 6999888887654
No 119
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=96.42 E-value=0.005 Score=62.88 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hhHHH-HH----HhcCCCCCCeE
Q 021440 126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SEGWK-VC----SFYNMDSIPAV 199 (312)
Q Consensus 126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~EG~~-~~----~~Y~~~~~P~i 199 (312)
.+|.++|+.++|.|++.+--+.|..|++|.+.-|-|++..+++++|||-..+|-+. |+--+ |. ..+.-+.+|--
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPms 181 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMS 181 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCcee
Confidence 78999999999999999999999999999999999999999999999998886443 33322 22 23444779999
Q ss_pred EEEeCC
Q 021440 200 LVIDPI 205 (312)
Q Consensus 200 ~IIdpr 205 (312)
+.|.|.
T Consensus 182 V~LTPd 187 (786)
T KOG2244|consen 182 VFLTPD 187 (786)
T ss_pred EEeCCC
Confidence 999874
No 120
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.40 E-value=0.0084 Score=39.35 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=32.6
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF 46 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff 46 (312)
++.|.+++++ |-+.+.|+.-|+.++||++.|++..|
T Consensus 2 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEM--GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 4688999998 88899999999999999999998766
No 121
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.36 E-value=0.022 Score=49.75 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChh-------------------
Q 021440 126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSE------------------- 183 (312)
Q Consensus 126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~E------------------- 183 (312)
........=++|.|.+|+...||.+|+.| ||.=..|-+-|+++ |-..-++.|..+
T Consensus 23 ~~~~~~~~l~gKvV~lyFsA~wC~pCR~F---TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf 99 (157)
T KOG2501|consen 23 TEVLASEALQGKVVGLYFSAHWCPPCRDF---TPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPF 99 (157)
T ss_pred ccchHhHhhCCcEEEEEEEEEECCchhhC---CchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecC
Confidence 44445555678999999999999999999 66777777777788 654445555322
Q ss_pred ----HHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440 184 ----GWKVCSFYNMDSIPAVLVIDPITGQKICS 212 (312)
Q Consensus 184 ----G~~~~~~Y~~~~~P~i~IIdprTGe~v~~ 212 (312)
-+++..+|.+...|.+.||.| .|..+..
T Consensus 100 ~d~~~~~l~~ky~v~~iP~l~i~~~-dG~~v~~ 131 (157)
T KOG2501|consen 100 GDDLIQKLSEKYEVKGIPALVILKP-DGTVVTE 131 (157)
T ss_pred CCHHHHHHHHhcccCcCceeEEecC-CCCEehH
Confidence 224667999999999999998 6876644
No 122
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.31 E-value=0.0088 Score=39.05 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=32.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF 46 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff 46 (312)
.+.|.+++++ |-+.+.|++-|+.++||++.|++-.|
T Consensus 2 ~~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEM--GFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999 89999999999999999999987643
No 123
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.23 E-value=0.052 Score=48.55 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=70.2
Q ss_pred CCcccc--ccccHHHHHHHHHHcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------
Q 021440 115 PPFHVM--FNGSFEKAKDAALAQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG------- 184 (312)
Q Consensus 115 PP~~l~--~~gsf~~A~~~Ak~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG------- 184 (312)
|+|... +.|++.+... +.-.+||++|+++ ..||+.|..--..+ ++...+|-+.++.++.++.|+++.
T Consensus 9 p~f~~~~~~~g~~~~v~L-~d~~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~ 85 (187)
T PRK10382 9 KPFKNQAFKNGEFIEVTE-KDTEGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSS 85 (187)
T ss_pred CCcEEEEEeCCcceEEEH-HHhCCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHh
Confidence 566552 2355533322 2336789999999 88999998743332 344455556677788887776543
Q ss_pred ----------------HHHHHhcCC----CCC--CeEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021440 185 ----------------WKVCSFYNM----DSI--PAVLVIDPITGQKICSWCGM----INPQPLGEMLLP 228 (312)
Q Consensus 185 ----------------~~~~~~Y~~----~~~--P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~ 228 (312)
..++..|.+ ..+ |...|||| .|.....|... .+.+++++.|..
T Consensus 86 ~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 86 SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred hccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 245567776 234 99999997 58877665321 367777776643
No 124
>PRK15000 peroxidase; Provisional
Probab=96.15 E-value=0.03 Score=50.46 Aligned_cols=91 Identities=10% Similarity=0.007 Sum_probs=62.9
Q ss_pred cCCeEEEEeecC-CCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HH
Q 021440 135 QDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV 187 (312)
Q Consensus 135 ~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~ 187 (312)
.+||++|+++.. +|+.|..--..+ +....+|-+.++.++.++.|+.+.. .+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 689999999995 899998754332 3445556566788888888865421 33
Q ss_pred HHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHH
Q 021440 188 CSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLP 228 (312)
Q Consensus 188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~ 228 (312)
++.|.+. .+|...|||| .|.....+.|.. +.+++++.|..
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4456654 5899999998 588877765532 56777766644
No 125
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.15 E-value=0.044 Score=49.53 Aligned_cols=87 Identities=9% Similarity=0.059 Sum_probs=59.8
Q ss_pred HHHHHHcCCeEEEE-eecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCC
Q 021440 129 KDAALAQDKWLLVN-LQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPI 205 (312)
Q Consensus 129 ~~~Ak~~~KwLLVn-iq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdpr 205 (312)
++.-+..++.+.|. +.++||..|..+. +.+.++..+ +..+..++.+ +...++..|++.++|++.|.+
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~-- 194 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEAN--ENPDLAEKYGVMSVPKIVINK-- 194 (215)
T ss_pred HHHHHhcCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeCC--CCHHHHHHhCCccCCEEEEec--
Confidence 33334456666555 7899999999885 344445443 3556655544 456788899999999999865
Q ss_pred CCeeEEEecCCCChHHHHHHHHH
Q 021440 206 TGQKICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 206 TGe~v~~~~G~~~~~~fl~~L~~ 228 (312)
.|+. +.|....++|.+.|..
T Consensus 195 ~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 195 GVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred CCEE---EECCCCHHHHHHHHHh
Confidence 3543 7788888887776653
No 126
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.93 E-value=0.056 Score=45.95 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=51.0
Q ss_pred cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440 171 NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 171 nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
.+.|..++.|. ...++..|++.++|+++++. .|+.+..+.|..+.+++++.|.+++++-
T Consensus 69 ~v~~akVDiD~--~~~LA~~fgV~siPTLl~Fk--dGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 69 TWQVAIADLEQ--SEAIGDRFGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred ceEEEEEECCC--CHHHHHHcCCccCCEEEEEE--CCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 36788776664 47799999999999999998 4999999999999999999999998764
No 127
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.79 E-value=0.057 Score=46.90 Aligned_cols=74 Identities=16% Similarity=0.057 Sum_probs=44.3
Q ss_pred HcCCeEEEEeecCC-CcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChh---------------------HHHHHH
Q 021440 134 AQDKWLLVNLQSTK-EFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSE---------------------GWKVCS 189 (312)
Q Consensus 134 ~~~KwLLVniq~~~-~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~E---------------------G~~~~~ 189 (312)
-++||++|+++..| |+.|..--+. +.++.+ .++.++.++.|+++ +..++.
T Consensus 42 ~~Gk~vvl~f~~s~~cp~C~~e~~~------l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~ 115 (167)
T PRK00522 42 FAGKRKVLNIFPSIDTGVCATSVRK------FNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGK 115 (167)
T ss_pred hCCCEEEEEEEcCCCCCccHHHHHH------HHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHH
Confidence 36899999999998 8999874221 222222 24566666655432 224444
Q ss_pred hcCCCCCC---------eEEEEeCCCCeeEEEec
Q 021440 190 FYNMDSIP---------AVLVIDPITGQKICSWC 214 (312)
Q Consensus 190 ~Y~~~~~P---------~i~IIdprTGe~v~~~~ 214 (312)
.|.+...| +..|||+ .|..+..|.
T Consensus 116 ~~gv~~~~~~~~g~~~r~tfvId~-~G~I~~~~~ 148 (167)
T PRK00522 116 AYGVAIAEGPLKGLLARAVFVLDE-NNKVVYSEL 148 (167)
T ss_pred HhCCeecccccCCceeeEEEEECC-CCeEEEEEE
Confidence 55554344 6777775 577666653
No 128
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=95.78 E-value=0.055 Score=48.37 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=58.5
Q ss_pred HcCCeEEEEeec-CCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH--------------------------HH
Q 021440 134 AQDKWLLVNLQS-TKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG--------------------------WK 186 (312)
Q Consensus 134 ~~~KwLLVniq~-~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG--------------------------~~ 186 (312)
-.+||++|+++. .+|+.|..--..+ +....+|-+.++-++.++.|+.+. ..
T Consensus 34 ~~Gk~~lL~F~p~~~~~~C~~e~~~l--~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 34 YKGKWVVLFFYPLDFTFVCPTEIIQF--SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred HCCCEEEEEEEcCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 358999999995 6788888644322 344555555677777777775431 24
Q ss_pred HHHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHH
Q 021440 187 VCSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEML 226 (312)
Q Consensus 187 ~~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L 226 (312)
+++.|.+- .||...|||| .|.....+.+.. +.++++..|
T Consensus 112 ia~~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~~~~~~r~~~e~l~~l 160 (199)
T PTZ00253 112 IARSYGVLEEEQGVAYRGLFIIDP-KGMLRQITVNDMPVGRNVEEVLRLL 160 (199)
T ss_pred HHHHcCCcccCCCceEEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHH
Confidence 55677762 4799999998 588777665533 344444444
No 129
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.72 E-value=0.033 Score=44.70 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=49.2
Q ss_pred cCCeEEEEeecC-CCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-------------------HHHHHHhcCCC
Q 021440 135 QDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-------------------GWKVCSFYNMD 194 (312)
Q Consensus 135 ~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-------------------G~~~~~~Y~~~ 194 (312)
.+||+||++... ||..|+.....+ +....+|=..++-++.+..+..+ +..++..|.+.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l--~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPEL--NELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHH--HHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred CCCcEEEEEeCccCccccccchhHH--HHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 679999999998 999998775442 12222222346777777777654 22344556555
Q ss_pred ------CCCeEEEEeCCCCeeEE
Q 021440 195 ------SIPAVLVIDPITGQKIC 211 (312)
Q Consensus 195 ------~~P~i~IIdprTGe~v~ 211 (312)
.+|++.|||+ .|..++
T Consensus 102 ~~~~~~~~p~~~lid~-~g~I~~ 123 (124)
T PF00578_consen 102 DEKDTLALPAVFLIDP-DGKIRY 123 (124)
T ss_dssp ETTTSEESEEEEEEET-TSBEEE
T ss_pred cccCCceEeEEEEECC-CCEEEe
Confidence 7899999997 476553
No 130
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.077 Score=52.14 Aligned_cols=97 Identities=22% Similarity=0.249 Sum_probs=74.8
Q ss_pred HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCee
Q 021440 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK 209 (312)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~ 209 (312)
......++..+|.+.++||..|+.|-.... .+...++. +..-..+|-.+-..+++.|++..||++.+..| |..
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~~~~---~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~--~~~ 113 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAPTYK---KLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRP--GKK 113 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhchHHH---HHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcC--CCc
Confidence 346677888999999999999999965443 55566666 55556778899999999999999999999997 444
Q ss_pred EEEecCCCChHHHHHHHHHHHhhC
Q 021440 210 ICSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 210 v~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
.....|..+.+.+.+.+...++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 114 PIDYSGPRNAESLAEFLIKELEPS 137 (383)
T ss_pred eeeccCcccHHHHHHHHHHhhccc
Confidence 555777777777776666666553
No 131
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.36 E-value=0.12 Score=48.83 Aligned_cols=92 Identities=11% Similarity=-0.029 Sum_probs=60.1
Q ss_pred cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------------------HHHH
Q 021440 135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------------GWKV 187 (312)
Q Consensus 135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------------------G~~~ 187 (312)
.+||++++++ ..||+.|..--..+ ++...+|-+.++.++.++.|+++ ...+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 5789999999 78999998733222 23334444455666666666542 1345
Q ss_pred HHhcCCC-----CCCeEEEEeCCCCeeEEEecC----CCChHHHHHHHHHH
Q 021440 188 CSFYNMD-----SIPAVLVIDPITGQKICSWCG----MINPQPLGEMLLPF 229 (312)
Q Consensus 188 ~~~Y~~~-----~~P~i~IIdprTGe~v~~~~G----~~~~~~fl~~L~~f 229 (312)
++.|.+. ..|.+.|||| .|.....+.. ..+.+++++.|..+
T Consensus 175 akayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHHcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 6677763 5899999998 5887776521 13677777766543
No 132
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.21 E-value=0.17 Score=45.47 Aligned_cols=96 Identities=11% Similarity=0.038 Sum_probs=59.3
Q ss_pred HHHcCCeEEE-EeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------------------------H
Q 021440 132 ALAQDKWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------W 185 (312)
Q Consensus 132 Ak~~~KwLLV-niq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------------~ 185 (312)
+.-++||++| ++-..||+.|..--..+ .+...+|-+.++.++.++.|+.+. .
T Consensus 23 ~d~~gk~vvL~~~p~~~cp~C~~El~~l--~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~ 100 (202)
T PRK13190 23 SKYKGKWVLLFSHPADFTPVCTTEFIAF--SRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDK 100 (202)
T ss_pred HHhCCCEEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCCh
Confidence 3336899877 56788999997543221 222233434566666666665321 2
Q ss_pred HHHHhcCCC------CCCeEEEEeCCCCeeEEEe----cCCCChHHHHHHHHHHH
Q 021440 186 KVCSFYNMD------SIPAVLVIDPITGQKICSW----CGMINPQPLGEMLLPFM 230 (312)
Q Consensus 186 ~~~~~Y~~~------~~P~i~IIdprTGe~v~~~----~G~~~~~~fl~~L~~fl 230 (312)
.++..|.+. .+|++.|||| .|.....+ .+..+.++++..|....
T Consensus 101 ~ia~~ygv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 101 ELAREYNLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HHHHHcCCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 455666652 4899999998 58765554 23357888887776654
No 133
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.068 Score=54.57 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=68.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPA 198 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~ 198 (312)
..+|++.+ ..+.++||-++.+||.-|+.|--+. ..-.+.+++ .--+-++ |-++...+|+.|.+..||+
T Consensus 32 ~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey---~kAA~~Lke~~s~i~LakV--Dat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 32 KDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEY---EKAATELKEEGSPVKLAKV--DATEESDLASKYEVRGYPT 102 (493)
T ss_pred cccHHHHh----ccCceEEEEEEchhhhhhhhhCcHH---HHHHHHhhccCCCceeEEe--ecchhhhhHhhhcCCCCCe
Confidence 45566554 4689999999999999999995332 222334444 3445555 5555599999999999999
Q ss_pred EEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440 199 VLVIDPITGQKICSWCGMINPQPLGEMLL 227 (312)
Q Consensus 199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~ 227 (312)
+-|.- +|.....++|.-+.+..+.-|+
T Consensus 103 lkiFr--nG~~~~~Y~G~r~adgIv~wl~ 129 (493)
T KOG0190|consen 103 LKIFR--NGRSAQDYNGPREADGIVKWLK 129 (493)
T ss_pred EEEEe--cCCcceeccCcccHHHHHHHHH
Confidence 99985 6887667889887777554443
No 134
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.82 E-value=0.28 Score=43.25 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=29.7
Q ss_pred CCCCCe---EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440 193 MDSIPA---VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 193 ~~~~P~---i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
+..+|+ ..|||+ .|..+..+.|.++++.+.+.|.+.|.
T Consensus 142 ~~~iP~~~~tflID~-~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 142 ARQIPWNFAKFLIDG-QGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CcccCcceEEEEECC-CCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 446784 589996 59999999998888888777777653
No 135
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=94.82 E-value=0.33 Score=43.47 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=58.9
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEE------EEeccCC------------------------
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIF------WQEYDDT------------------------ 181 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIf------wq~~~ds------------------------ 181 (312)
+.-.+|-.|||+...||.+|.+= .|.+.++=.++|-+ ..++.|.
T Consensus 55 ~~l~GKV~lvn~~Aswc~~c~~e------~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~ 128 (184)
T TIGR01626 55 AELAGKVRVVHHIAGRTSAKEXN------ASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQ 128 (184)
T ss_pred HHcCCCEEEEEEEecCCChhhcc------chHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcce
Confidence 44558999999999999999752 23333332234444 3333332
Q ss_pred ----hhHHHHHHhcCCCCCCeE-EEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440 182 ----SEGWKVCSFYNMDSIPAV-LVIDPITGQKICSWCGMINPQPLGEMLLPFM 230 (312)
Q Consensus 182 ----~EG~~~~~~Y~~~~~P~i-~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl 230 (312)
.+| .+...|.+..+|.. .|||+ .|+.+.+..|.++.+++-+ +...+
T Consensus 129 vllD~~g-~v~~~~gv~~~P~T~fVIDk-~GkVv~~~~G~l~~ee~e~-~~~li 179 (184)
T TIGR01626 129 VVLDDKG-AVKNAWQLNSEDSAIIVLDK-TGKVKFVKEGALSDSDIQT-VISLV 179 (184)
T ss_pred EEECCcc-hHHHhcCCCCCCceEEEECC-CCcEEEEEeCCCCHHHHHH-HHHHH
Confidence 122 24457788889877 89996 6999999999988876643 44433
No 136
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.72 E-value=0.18 Score=41.31 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=48.9
Q ss_pred cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-HH-------------------HHHhcCC
Q 021440 135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-WK-------------------VCSFYNM 193 (312)
Q Consensus 135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-~~-------------------~~~~Y~~ 193 (312)
.+|+++|++. +.||..|...-+.+ +....+|=..++.|+.+..++++. .+ +...|++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAF--RDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 6888888887 78999998764443 222223323456666666665432 23 3334444
Q ss_pred CCC---------CeEEEEeCCCCeeEEEecCCC
Q 021440 194 DSI---------PAVLVIDPITGQKICSWCGMI 217 (312)
Q Consensus 194 ~~~---------P~i~IIdprTGe~v~~~~G~~ 217 (312)
... |++.|||+ +|+.+..|.|..
T Consensus 99 ~~~~~~~~~~~~p~~~lid~-~g~i~~~~~~~~ 130 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDP-DGKIRYVEVEPL 130 (140)
T ss_pred ccccccccCceeEEEEEECC-CCcEEEEEecCC
Confidence 333 47888896 688888887754
No 137
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.70 E-value=0.055 Score=52.07 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=66.2
Q ss_pred CCeEEEEeecCCCcccchhhcccC-CCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEE-e
Q 021440 136 DKWLLVNLQSTKEFSSLMLNRDTW-GNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS-W 213 (312)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw-~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~-~ 213 (312)
+..++|+++..||.-+++|.--.- +...+++-.-++=|.|+ .+|..---.++++|++..||++=|+- .|+++++ +
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg-~VDcd~e~~ia~ky~I~KyPTlKvfr--nG~~~~rEY 89 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG-KVDCDKEDDIADKYHINKYPTLKVFR--NGEMMKREY 89 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE-EcccchhhHHhhhhccccCceeeeee--ccchhhhhh
Confidence 678999999999999999954321 11222332223456674 34544445688999999999999986 5999985 8
Q ss_pred cCCCChHHHHHHHHHHHh
Q 021440 214 CGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 214 ~G~~~~~~fl~~L~~fl~ 231 (312)
.|..+++.|++-+.+-++
T Consensus 90 Rg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 90 RGQRSVEALIEFIEKQLS 107 (375)
T ss_pred ccchhHHHHHHHHHHHhc
Confidence 898888888777665543
No 138
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.37 E-value=0.34 Score=37.97 Aligned_cols=83 Identities=8% Similarity=-0.011 Sum_probs=52.8
Q ss_pred HHHHHcCCeE-EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440 130 DAALAQDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ 208 (312)
Q Consensus 130 ~~Ak~~~KwL-LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe 208 (312)
+.+++-++.+ +.-+.++||..|..+.+-+ +++.+. ..++-|..++.+ +-..++..|++.+.|+++| | |+
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~---~~l~~~-~~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi-d---G~ 74 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQAL---NLMAVL-NPNIEHEMIDGA--LFQDEVEERGIMSVPAIFL-N---GE 74 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHH---HHHHHH-CCCceEEEEEhH--hCHHHHHHcCCccCCEEEE-C---CE
Confidence 3444445553 4444568999999885433 333322 224666666555 4457888999999999964 4 77
Q ss_pred eEEEecCCCChHHHHH
Q 021440 209 KICSWCGMINPQPLGE 224 (312)
Q Consensus 209 ~v~~~~G~~~~~~fl~ 224 (312)
.+ +.|..+.+++++
T Consensus 75 ~~--~~G~~~~~e~~~ 88 (89)
T cd03026 75 LF--GFGRMTLEEILA 88 (89)
T ss_pred EE--EeCCCCHHHHhh
Confidence 65 458777777654
No 139
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=94.02 E-value=0.11 Score=42.72 Aligned_cols=22 Identities=18% Similarity=-0.070 Sum_probs=18.5
Q ss_pred HcCCeEEEEeecCCCcc-cchhh
Q 021440 134 AQDKWLLVNLQSTKEFS-SLMLN 155 (312)
Q Consensus 134 ~~~KwLLVniq~~~~f~-c~~ln 155 (312)
-.+||++|++..+||.. |...-
T Consensus 20 ~~gk~~vl~f~~~~C~~~C~~~l 42 (142)
T cd02968 20 LKGKPVLVYFGYTHCPDVCPTTL 42 (142)
T ss_pred hCCCEEEEEEEcCCCcccCHHHH
Confidence 36899999999999997 98543
No 140
>PRK13189 peroxiredoxin; Provisional
Probab=93.82 E-value=0.29 Score=44.79 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=56.9
Q ss_pred cCCeEEE-EeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------------------------HHHH
Q 021440 135 QDKWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKVC 188 (312)
Q Consensus 135 ~~KwLLV-niq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------------~~~~ 188 (312)
.+||++| ++-..||+.|..--..+ +....+|-+.|+.++.++.|+... ..++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l--~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAF--QKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 6788876 55688999998643322 333445555566667776665431 2345
Q ss_pred HhcCCC-------CCCeEEEEeCCCCeeEEEecC----CCChHHHHHHHHHH
Q 021440 189 SFYNMD-------SIPAVLVIDPITGQKICSWCG----MINPQPLGEMLLPF 229 (312)
Q Consensus 189 ~~Y~~~-------~~P~i~IIdprTGe~v~~~~G----~~~~~~fl~~L~~f 229 (312)
+.|.+. ..|.+.|||| .|.....+.+ ..+.++++..|..+
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHhCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 566652 4689999998 5877655432 23567777666543
No 141
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.56 E-value=0.11 Score=34.49 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=45.0
Q ss_pred EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHH-HHhcCCCCCCeEEEEeCC
Q 021440 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKV-CSFYNMDSIPAVLVIDPI 205 (312)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~-~~~Y~~~~~P~i~IIdpr 205 (312)
|+.++..+|..|+.+...+-. - .+.+.++.+..++.+....... ...+++..+|.+.++++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAE-L---ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHH-H---HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 466778899999998653311 1 4567788888888777665443 357888999999999963
No 142
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=93.56 E-value=0.39 Score=39.84 Aligned_cols=75 Identities=15% Similarity=0.043 Sum_probs=48.2
Q ss_pred cCCeEEEEeecCC-CcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhH---------------------HHHHHh
Q 021440 135 QDKWLLVNLQSTK-EFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEG---------------------WKVCSF 190 (312)
Q Consensus 135 ~~KwLLVniq~~~-~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG---------------------~~~~~~ 190 (312)
.+|+++|++...| |..|..--.. +.++.. .++.++.++.|..+. ..++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~------l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 98 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKR------FNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA 98 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHH------HHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence 5899999999988 5888875333 333322 267888887775431 234444
Q ss_pred cCCC------CCCeEEEEeCCCCeeEEEecCC
Q 021440 191 YNMD------SIPAVLVIDPITGQKICSWCGM 216 (312)
Q Consensus 191 Y~~~------~~P~i~IIdprTGe~v~~~~G~ 216 (312)
|.+. ..|...|||+ .|..+..+.|.
T Consensus 99 ~gv~~~~~~~~~~~~~iid~-~G~I~~~~~~~ 129 (143)
T cd03014 99 YGVLIKDLGLLARAVFVIDE-NGKVIYVELVP 129 (143)
T ss_pred hCCeeccCCccceEEEEEcC-CCeEEEEEECC
Confidence 5442 1578888886 58877776653
No 143
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.48 E-value=0.38 Score=41.13 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=48.9
Q ss_pred CeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCC--CCCeEEEEeCCCCeeEEEec
Q 021440 137 KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMD--SIPAVLVIDPITGQKICSWC 214 (312)
Q Consensus 137 KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~--~~P~i~IIdprTGe~v~~~~ 214 (312)
+.+++.+..........+...+ ..+..-.+.+++|.-++.+ ...+++..|.+. .+|.++|+++.+++.-....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~ 170 (184)
T PF13848_consen 96 PPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPE 170 (184)
T ss_dssp EEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--S
T ss_pred ceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCC
Confidence 3355555443333343332221 3333333566777777666 445688889886 89999999998877433347
Q ss_pred CCCChHHHH
Q 021440 215 GMINPQPLG 223 (312)
Q Consensus 215 G~~~~~~fl 223 (312)
|.++++.+.
T Consensus 171 ~~~~~~~i~ 179 (184)
T PF13848_consen 171 GEITPESIE 179 (184)
T ss_dssp SCGCHHHHH
T ss_pred CCCCHHHHH
Confidence 777775533
No 144
>PRK13191 putative peroxiredoxin; Provisional
Probab=93.43 E-value=0.44 Score=43.41 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=60.4
Q ss_pred cCCeEEE-EeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-------------------------HHH
Q 021440 135 QDKWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-------------------------KVC 188 (312)
Q Consensus 135 ~~KwLLV-niq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-------------------------~~~ 188 (312)
.+||++| ++-..||+.|..--..+ ++...+|-+.++.++.++.|+.... .++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l--~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSF--AKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 6789887 66788999998854442 3444566667788888887765431 344
Q ss_pred HhcCCC-------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021440 189 SFYNMD-------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLP 228 (312)
Q Consensus 189 ~~Y~~~-------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~ 228 (312)
..|.+- ..|.+.|||| .|.....+.+. .+.+++|..|..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred HHcCCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 556641 3689999998 58776654322 267777776654
No 145
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=93.25 E-value=0.64 Score=38.57 Aligned_cols=82 Identities=13% Similarity=0.012 Sum_probs=43.9
Q ss_pred HHHcC-CeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH---------------------HHHH
Q 021440 132 ALAQD-KWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG---------------------WKVC 188 (312)
Q Consensus 132 Ak~~~-KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG---------------------~~~~ 188 (312)
+.-.+ |+++|++. .+||..|..--..+ .....+|-+.++.++.++.++++. .+++
T Consensus 23 ~~~~g~k~~vl~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 100 (149)
T cd03018 23 SEFRGRKPVVLVFFPLAFTPVCTKELCAL--RDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVA 100 (149)
T ss_pred HHHcCCCeEEEEEeCCCCCccHHHHHHHH--HHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHH
Confidence 44345 88887776 78999997543222 111222222345555554444321 2344
Q ss_pred HhcCCC----C--CCeEEEEeCCCCeeEEEecCC
Q 021440 189 SFYNMD----S--IPAVLVIDPITGQKICSWCGM 216 (312)
Q Consensus 189 ~~Y~~~----~--~P~i~IIdprTGe~v~~~~G~ 216 (312)
..|.+. . .|+..|||+ .|+.++.+.|.
T Consensus 101 ~~~g~~~~~~~~~~~~~~lid~-~G~v~~~~~~~ 133 (149)
T cd03018 101 KAYGVFDEDLGVAERAVFVIDR-DGIIRYAWVSD 133 (149)
T ss_pred HHhCCccccCCCccceEEEECC-CCEEEEEEecC
Confidence 445543 1 237788886 57777776654
No 146
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.08 E-value=0.56 Score=42.07 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=52.9
Q ss_pred CeEEE-EeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------------------------HHHHHh
Q 021440 137 KWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKVCSF 190 (312)
Q Consensus 137 KwLLV-niq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------------~~~~~~ 190 (312)
||++| ++-..||+.|..--..+ .....+|-+.++.++.++.|+.+. ..++..
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l--~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~ 103 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAF--AKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL 103 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence 78755 66688999998754332 223334445567777777776432 244556
Q ss_pred cCCC--------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHH
Q 021440 191 YNMD--------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLL 227 (312)
Q Consensus 191 Y~~~--------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~ 227 (312)
|.+. ..|.+.|||| .|.....+.+.. +.++++..|.
T Consensus 104 yg~~~~~~~~~~~~r~~fiID~-~G~I~~~~~~~~~~gr~~~ell~~l~ 151 (203)
T cd03016 104 LGMIDPDAGSTLTVRAVFIIDP-DKKIRLILYYPATTGRNFDEILRVVD 151 (203)
T ss_pred cCCccccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 6652 2356899998 477766654432 4455555553
No 147
>PRK13599 putative peroxiredoxin; Provisional
Probab=92.88 E-value=0.48 Score=43.25 Aligned_cols=91 Identities=15% Similarity=0.054 Sum_probs=53.8
Q ss_pred cCCeE-EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------------------------HHHH
Q 021440 135 QDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKVC 188 (312)
Q Consensus 135 ~~KwL-LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------------~~~~ 188 (312)
.+||+ |+++-..||+.|..--..+ ...-.+|-+.++.++.++.|+.+. ..++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l--~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEF--ARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 57896 6788889999998732221 122233444456666666665422 2455
Q ss_pred HhcCCC-------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021440 189 SFYNMD-------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLP 228 (312)
Q Consensus 189 ~~Y~~~-------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~ 228 (312)
..|.+. ..|++.|||| .|+....+... ...+++++.|..
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 666652 5799999998 58776554211 245666655543
No 148
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=92.84 E-value=0.82 Score=37.63 Aligned_cols=48 Identities=6% Similarity=-0.071 Sum_probs=30.5
Q ss_pred CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH
Q 021440 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW 185 (312)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~ 185 (312)
++.||+++-..||..|+.--+.+ ++-..++-..++.++.+..++.+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l--~~~~~~~~~~~v~vv~V~~~~~~~~ 71 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRAL--SKLLPELDALGVELVAVGPESPEKL 71 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHH--HHHHHHHHhcCeEEEEEeCCCHHHH
Confidence 44555556689999999765443 2223333345788888888776544
No 149
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=92.61 E-value=0.31 Score=32.84 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=34.4
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~ 48 (312)
++.|.+..++--.-+.+.-+..|++++||+|.||+..++.
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4678888888788899999999999999999999988763
No 150
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=92.33 E-value=1.3 Score=39.50 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh----hccEEEEEeccC--------C-hhHHHHHH-hcCCCC
Q 021440 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII----SVNFIFWQEYDD--------T-SEGWKVCS-FYNMDS 195 (312)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i----~~nFIfwq~~~d--------s-~EG~~~~~-~Y~~~~ 195 (312)
..+.=.+|.+||++.++||..|..+. .+.++. ...|.++.+..+ + .+-..+++ .|.+ .
T Consensus 19 ~Ls~~~GKvvLVvf~AS~C~~~~q~~-------~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~ 90 (183)
T PRK10606 19 TLEKYAGNVLLIVNVASKCGLTPQYE-------QLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-T 90 (183)
T ss_pred eHHHhCCCEEEEEEEeCCCCCcHHHH-------HHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-C
Confidence 34555689999999999999887653 344443 346888888653 2 34556776 5765 5
Q ss_pred CCeEEEEeCCCCee
Q 021440 196 IPAVLVIDPITGQK 209 (312)
Q Consensus 196 ~P~i~IIdprTGe~ 209 (312)
||.+.=+|. +|+.
T Consensus 91 Fpv~~k~dv-nG~~ 103 (183)
T PRK10606 91 FPMFSKIEV-NGEG 103 (183)
T ss_pred ceeEEEEcc-CCCC
Confidence 998888885 5664
No 151
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=92.18 E-value=0.45 Score=32.13 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=33.8
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~ 48 (312)
.+.|.+..++=-..+.+..+..|+.++||+|.||+..++.
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4566677777678899999999999999999999988763
No 152
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=91.92 E-value=0.71 Score=34.72 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=41.0
Q ss_pred ecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecC-CCChHHH
Q 021440 144 QSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCG-MINPQPL 222 (312)
Q Consensus 144 q~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G-~~~~~~f 222 (312)
.+++|..|..+-. .+.+.+.++=+-+.+..- .+..++ ..|++.+.|++ +|| |+.+ |.| ..+.+++
T Consensus 6 ~~~~C~~C~~~~~------~~~~~~~~~~i~~ei~~~-~~~~~~-~~ygv~~vPal-vIn---g~~~--~~G~~p~~~el 71 (76)
T PF13192_consen 6 FSPGCPYCPELVQ------LLKEAAEELGIEVEIIDI-EDFEEI-EKYGVMSVPAL-VIN---GKVV--FVGRVPSKEEL 71 (76)
T ss_dssp ECSSCTTHHHHHH------HHHHHHHHTTEEEEEEET-TTHHHH-HHTT-SSSSEE-EET---TEEE--EESS--HHHHH
T ss_pred eCCCCCCcHHHHH------HHHHHHHhcCCeEEEEEc-cCHHHH-HHcCCCCCCEE-EEC---CEEE--EEecCCCHHHH
Confidence 4667999997743 344444433233344322 444444 99999999999 666 6644 788 5566666
Q ss_pred HHHH
Q 021440 223 GEML 226 (312)
Q Consensus 223 l~~L 226 (312)
.+.|
T Consensus 72 ~~~l 75 (76)
T PF13192_consen 72 KELL 75 (76)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 153
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=91.51 E-value=0.8 Score=32.92 Aligned_cols=56 Identities=11% Similarity=0.021 Sum_probs=37.2
Q ss_pred EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (312)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I 201 (312)
++.++.+||..|+.+.+-+ +++.+ ...++-|..++.+.. ..++..|.+.+.|+|+|
T Consensus 3 v~~f~~~~C~~C~~~~~~l---~~l~~-~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAA---NRIAA-LNPNISAEMIDAAEF--PDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHH---HHHHH-hCCceEEEEEEcccC--HhHHHHcCCcccCEEEE
Confidence 3456788999999885422 12211 123577777776654 35788999999999865
No 154
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.22 E-value=0.046 Score=50.38 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=38.6
Q ss_pred chhhHHHHHhhhccccCC-CH-HHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440 5 SIDKESRISSFLEIAVGA-SG-VTAIECLQATSWKLDEAILLFFAVNE 50 (312)
Q Consensus 5 s~~~~~~i~~F~~iTt~~-~~-~~A~~~Le~~~wdLe~Av~lff~~~~ 50 (312)
+.++..+|.+|..++..+ .+ .-|+.||++.||||..|++.||+.+.
T Consensus 20 t~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t 67 (244)
T KOG4351|consen 20 TTDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDT 67 (244)
T ss_pred CCCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCC
Confidence 446889999999995433 34 78999999999999999999999764
No 155
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=90.10 E-value=0.11 Score=51.25 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=38.4
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440 8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (312)
Q Consensus 8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~ 49 (312)
..+.|.+|+++ ||.++..|+.||+.++||++.|...++...
T Consensus 4 p~~~ls~f~~~-t~~se~~~~~~l~s~~~d~~~a~~~~~~~~ 44 (380)
T KOG2086|consen 4 PLDSLSEFRAV-TGPSESRARFYLESIYWDREAAHRSELEAF 44 (380)
T ss_pred chhHHHHHhcc-CCCCccccccccccCCCchhhhhhhhcccc
Confidence 56789999999 999999999999999999999999999864
No 156
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=89.54 E-value=1.6 Score=32.50 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=44.6
Q ss_pred CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcC--CCCCCeEEEEe
Q 021440 136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYN--MDSIPAVLVID 203 (312)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~--~~~~P~i~IId 203 (312)
++.++|++.++||..|+.+ .+.+.++.++ ...|..++..+ ........|. +..+|.+.+..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDD-ENPDLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCC-CChHHHHHHhhhhccCCeEEEEe
Confidence 8899999889999999999 5556666554 35666666542 5566677777 78889887554
No 157
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=89.48 E-value=0.53 Score=39.17 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHH
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAIL 43 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~ 43 (312)
.+.|.-.++= +|++.+.|+.-|+.|||||-.||-
T Consensus 79 ~eDI~lV~eq-~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 79 EDDIELVMKQ-CNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred HHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHH
Confidence 4566667777 899999999999999999999986
No 158
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=89.28 E-value=1.4 Score=41.07 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-----cEEEEEecc-CC-------------------
Q 021440 127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-----NFIFWQEYD-DT------------------- 181 (312)
Q Consensus 127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-----nFIfwq~~~-ds------------------- 181 (312)
.++.......|-.++.|.|+.|..|++|..+ +..+++. .++.+.+-. ++
T Consensus 108 ~~i~~g~~~ak~~I~vFtDp~CpyC~kl~~~------l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~ 181 (251)
T PRK11657 108 HWILDGKADAPRIVYVFADPNCPYCKQFWQQ------ARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQE 181 (251)
T ss_pred CCccccCCCCCeEEEEEECCCChhHHHHHHH------HHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHH
Confidence 3455566677888999999999999999654 3334332 233332211 10
Q ss_pred -----------------h-------hHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440 182 -----------------S-------EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL 227 (312)
Q Consensus 182 -----------------~-------EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~ 227 (312)
. +..++.+.+.+...|+|++.|. +|+ +.+..|+.++++|.+.|.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~-~G~-~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 182 YEASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK-DGT-LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CCC-EEEecCCCCHHHHHHHhC
Confidence 0 0112445566789999999996 464 455789999998877663
No 159
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=89.24 E-value=1 Score=37.60 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCeEEEEeec-------CCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHH-----HHHH
Q 021440 125 FEKAKDAALAQDKWLLVNLQS-------TKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGW-----KVCS 189 (312)
Q Consensus 125 f~~A~~~Ak~~~KwLLVniq~-------~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~-----~~~~ 189 (312)
|.++++.....++.|+|.+.+ +||.+|..- .+-|.+.++ ++.+|..+.+.+.... .|-+
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~a------ep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAA------EPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHH------HHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHH------HHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 555566656677899999886 478888765 466666655 3677777766554322 3444
Q ss_pred --hcCCCCCCeEEEEeCCCCeeE
Q 021440 190 --FYNMDSIPAVLVIDPITGQKI 210 (312)
Q Consensus 190 --~Y~~~~~P~i~IIdprTGe~v 210 (312)
.+++...|+|+-.. +++++
T Consensus 82 ~p~~~l~~IPTLi~~~--~~~rL 102 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWE--TGERL 102 (119)
T ss_dssp --CC---SSSEEEECT--SS-EE
T ss_pred cceeeeeecceEEEEC--CCCcc
Confidence 68899999999887 34443
No 160
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=88.67 E-value=0.65 Score=38.64 Aligned_cols=36 Identities=33% Similarity=0.304 Sum_probs=31.3
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 021440 8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILL 44 (312)
Q Consensus 8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~l 44 (312)
.++.|.-.++= +|++.+.|+.-|+.|||||-.||-.
T Consensus 76 ~~edI~lv~~q-~gvs~~~A~~AL~~~~gDl~~AI~~ 111 (115)
T PRK06369 76 PEEDIELVAEQ-TGVSEEEARKALEEANGDLAEAILK 111 (115)
T ss_pred CHHHHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHH
Confidence 35667777787 8999999999999999999999864
No 161
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=88.62 E-value=2.2 Score=35.78 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=56.5
Q ss_pred CCeEEEEeecCCCcccchhhcccCCC--HHHHHHhhcc-EEEEEeccCChhHHHHHHhcCC--CCCCeEEEEeCCCCeeE
Q 021440 136 DKWLLVNLQSTKEFSSLMLNRDTWGN--EAVSQIISVN-FIFWQEYDDTSEGWKVCSFYNM--DSIPAVLVIDPITGQKI 210 (312)
Q Consensus 136 ~KwLLVniq~~~~f~c~~lnRDvw~~--~~V~~~i~~n-FIfwq~~~ds~EG~~~~~~Y~~--~~~P~i~IIdprTGe~v 210 (312)
+.|=+|-|-.. ..+|..=.|+-|.+ ..|.+-.+.. +.|.-++.+.... +..++.+ ..||.++|+++..| +-
T Consensus 20 ~~~C~i~~l~~-~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~--~~~~fgl~~~~~P~v~i~~~~~~-KY 95 (130)
T cd02983 20 KQLCIIAFLPH-ILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD--LEEALNIGGFGYPAMVAINFRKM-KF 95 (130)
T ss_pred CCeEEEEEcCc-cccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH--HHHHcCCCccCCCEEEEEecccC-cc
Confidence 45666666442 22333322222211 2444444556 6666565555444 8888888 35999999999655 43
Q ss_pred EEecCCCChHHHHHHHHHHHhhC
Q 021440 211 CSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 211 ~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
....|.++.+.+.+-|..|++..
T Consensus 96 ~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 96 ATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred ccccCccCHHHHHHHHHHHHcCC
Confidence 33678888888777777777654
No 162
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=87.92 E-value=2.6 Score=39.84 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440 124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId 203 (312)
.|-++...+ ...-|++|.|+.+.+..|..||.-+ ..-..+|..-.||=..+..- + ++..|+....|+|+|.-
T Consensus 135 ~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L--~~LA~kyp~vKFvkI~a~~~---~--~~~~f~~~~LPtllvYk 206 (265)
T PF02114_consen 135 EFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCL--ECLARKYPEVKFVKIRASKC---P--ASENFPDKNLPTLLVYK 206 (265)
T ss_dssp HHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHH--HHHHHH-TTSEEEEEEECGC---C--TTTTS-TTC-SEEEEEE
T ss_pred hHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHH--HHHHHhCCceEEEEEehhcc---C--cccCCcccCCCEEEEEE
Confidence 355555432 2356999999999999999998765 34455666666765544221 1 56678889999999997
Q ss_pred CCCCeeEEEecCCC---ChHHHHHHHHHHHhhCCC
Q 021440 204 PITGQKICSWCGMI---NPQPLGEMLLPFMDRSPR 235 (312)
Q Consensus 204 prTGe~v~~~~G~~---~~~~fl~~L~~fl~~~~~ 235 (312)
.|..+..+.|.. .-+-+...|..||.++..
T Consensus 207 --~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 207 --NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp --TTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred --CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 599998877642 345567889999988764
No 163
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=87.57 E-value=1.6 Score=40.28 Aligned_cols=88 Identities=11% Similarity=0.200 Sum_probs=57.0
Q ss_pred HHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc----EEEEEeccCCh----------------------
Q 021440 129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN----FIFWQEYDDTS---------------------- 182 (312)
Q Consensus 129 ~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n----FIfwq~~~ds~---------------------- 182 (312)
........|-.++.|.|+.|..|++|.++ +.++.+.+ |+.|...-..+
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~------l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~ 173 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHEQ------MKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDA 173 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHHH------HHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHH
Confidence 33345567889999999999999999644 56665432 33343310111
Q ss_pred ----------------hHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440 183 ----------------EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 183 ----------------EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~ 228 (312)
+-.++++.+++...|+|++-| |+.+ .|+.++++|.+.|.+
T Consensus 174 ~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~~---G~~~---~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 174 MKGKDVSPASCDVDIADHYALGVQFGVQGTPAIVLSN---GTLV---PGYQGPKEMKAFLDE 229 (232)
T ss_pred HcCCCCCcccccchHHHhHHHHHHcCCccccEEEEcC---CeEe---eCCCCHHHHHHHHHH
Confidence 122345666778899998655 6654 899999987766653
No 164
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=87.32 E-value=1.2 Score=37.50 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=42.8
Q ss_pred HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCChhHHHHHHhc---CCCCCCeEEEEeCC
Q 021440 130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTSEGWKVCSFY---NMDSIPAVLVIDPI 205 (312)
Q Consensus 130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~EG~~~~~~Y---~~~~~P~i~IIdpr 205 (312)
..+...+++-++-|..+||++|... -|.+.++...+ -|=+.+- ...+...+...| ...+.|+++|+|.
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~------vP~l~kiae~~p~i~~~~i-~rd~~~el~~~~lt~g~~~IP~~I~~d~- 106 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARN------VPVLAKIAEANPNIEVRII-LRDENKELMDQYLTNGGRSIPTFIFLDK- 106 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHH------HHHHHHHHHH-TTEEEEEE--HHHHHHHTTTTTT-SS--SSEEEEE-T-
T ss_pred HHHhcCCCcEEEEEECCCchhHHHH------HHHHHHHHHhCCCCeEEEE-EecCChhHHHHHHhCCCeecCEEEEEcC-
Confidence 3344556677778889999999987 37777777765 3322221 223344444433 3478999999996
Q ss_pred CCeeEEEecCC
Q 021440 206 TGQKICSWCGM 216 (312)
Q Consensus 206 TGe~v~~~~G~ 216 (312)
.|+.+.+|...
T Consensus 107 ~~~~lg~wger 117 (129)
T PF14595_consen 107 DGKELGRWGER 117 (129)
T ss_dssp T--EEEEEESS
T ss_pred CCCEeEEEcCC
Confidence 48999999753
No 165
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=86.42 E-value=4.5 Score=28.57 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=41.7
Q ss_pred EEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCC--hhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCC
Q 021440 141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDT--SEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI 217 (312)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds--~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~ 217 (312)
.-++.+||..|+.+.+ ++++ +.-+..++++. .....+...++...+|++.+ + |+. +.|+
T Consensus 3 ~lf~~~~C~~C~~~~~----------~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~---~~~---~~g~- 64 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKE----------YLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-G---HKI---IVGF- 64 (74)
T ss_pred EEEcCCCChhHHHHHH----------HHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-C---CEE---EeeC-
Confidence 4456689999998742 2332 34455556554 33556788899999999876 3 543 5664
Q ss_pred ChHHHHH
Q 021440 218 NPQPLGE 224 (312)
Q Consensus 218 ~~~~fl~ 224 (312)
+++.+.+
T Consensus 65 ~~~~i~~ 71 (74)
T TIGR02196 65 DPEKLDQ 71 (74)
T ss_pred CHHHHHH
Confidence 6655443
No 166
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.31 E-value=1.6 Score=42.96 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=68.4
Q ss_pred HHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh--hccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCC
Q 021440 129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII--SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPIT 206 (312)
Q Consensus 129 ~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i--~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprT 206 (312)
....+..++-.||-++.+||..|+.|-. .| ..+...+ ..+.-++.++.+ -...+++.+.+..||++.+.-+
T Consensus 155 ~~~~~~~~~~~lv~f~aPwc~~ck~l~~-~~--~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~-- 227 (383)
T KOG0191|consen 155 DETVKDSDADWLVEFYAPWCGHCKKLAP-EW--EKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPP-- 227 (383)
T ss_pred hhhhhccCcceEEEEeccccHHhhhcCh-HH--HHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecC--
Confidence 3446667787888889999999999932 22 2222233 356666666655 6678889999999999977765
Q ss_pred Cee-EEEecCCCChHHHHHHHHHHHhhC
Q 021440 207 GQK-ICSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 207 Ge~-v~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
|.. .....|..+.+.++.-+.......
T Consensus 228 ~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 228 GEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred CCcccccccccccHHHHHHHHHhhcCCC
Confidence 444 445667778888777777776664
No 167
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.30 E-value=11 Score=33.11 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=63.0
Q ss_pred HHHHHHcCCeEEEEeecC-CCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-------------------HHH
Q 021440 129 KDAALAQDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-------------------KVC 188 (312)
Q Consensus 129 ~~~Ak~~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-------------------~~~ 188 (312)
+..+.-.+||+++|++-- +.+-|..=-++. ++...+|=+-+.+.++++.|+++.. +++
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~F--rd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~ 100 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACDF--RDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVA 100 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHH
Confidence 445666788999999953 344443322111 2344455566899999999976533 456
Q ss_pred HhcCC------------CCCCeEEEEeCCCCeeEEEecCC---CChHHHHHHHHHH
Q 021440 189 SFYNM------------DSIPAVLVIDPITGQKICSWCGM---INPQPLGEMLLPF 229 (312)
Q Consensus 189 ~~Y~~------------~~~P~i~IIdprTGe~v~~~~G~---~~~~~fl~~L~~f 229 (312)
..|.+ ..-+...|||+ .|.....|... -.+++.++.|.+.
T Consensus 101 ~~ygv~~~k~~~gk~~~~~~R~TfvId~-dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 101 EAYGVWGEKKMYGKEYMGIERSTFVIDP-DGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred HHhCcccccccCccccccccceEEEECC-CCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 66665 14578899997 69999999543 2456777766653
No 168
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=83.38 E-value=0.91 Score=25.50 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHhhHh
Q 021440 255 NIKDCCSALAASMET 269 (312)
Q Consensus 255 ~~eql~~Ai~~Sl~~ 269 (312)
++++|++||+.||++
T Consensus 3 Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 3 EDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhcc
Confidence 568999999999986
No 169
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=83.09 E-value=1.1 Score=27.48 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhhHhhcCC
Q 021440 255 NIKDCCSALAASMETIKDT 273 (312)
Q Consensus 255 ~~eql~~Ai~~Sl~~~~~~ 273 (312)
++++|++||+.||.+.+..
T Consensus 2 EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 2 EDEDLQLALELSLQEAEES 20 (26)
T ss_pred hHHHHHHHHHHhHHHhhhc
Confidence 4689999999999987754
No 170
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=82.70 E-value=2.5 Score=43.42 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=69.5
Q ss_pred cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIP 197 (312)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P 197 (312)
+..-+|++ .+-.++|=+||-++.+||.-|+.|.-- =+++.+.++ ++-|+-.+|+...|-.. ..++.||
T Consensus 371 vVgknfd~---iv~de~KdVLvEfyAPWCgHCk~laP~---~eeLAe~~~~~~~vviAKmDaTaNd~~~----~~~~~fP 440 (493)
T KOG0190|consen 371 VVGKNFDD---IVLDEGKDVLVEFYAPWCGHCKALAPI---YEELAEKYKDDENVVIAKMDATANDVPS----LKVDGFP 440 (493)
T ss_pred EeecCHHH---HhhccccceEEEEcCcccchhhhhhhH---HHHHHHHhcCCCCcEEEEeccccccCcc----ccccccc
Confidence 34445654 577899999999999999999999421 245555554 36788888877666332 2346699
Q ss_pred eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021440 198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK 236 (312)
Q Consensus 198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~~ 236 (312)
+|.+.-.-..+....++|..+ ++.|..|++.+...
T Consensus 441 TI~~~pag~k~~pv~y~g~R~----le~~~~fi~~~a~~ 475 (493)
T KOG0190|consen 441 TILFFPAGHKSNPVIYNGDRT----LEDLKKFIKKSATE 475 (493)
T ss_pred eEEEecCCCCCCCcccCCCcc----hHHHHhhhccCCCc
Confidence 999886422234555666554 55577788877664
No 171
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=81.55 E-value=3.8 Score=39.78 Aligned_cols=98 Identities=11% Similarity=0.146 Sum_probs=63.3
Q ss_pred ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEe-ccCChhHHHHHHhcCCCCCCeE
Q 021440 121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQE-YDDTSEGWKVCSFYNMDSIPAV 199 (312)
Q Consensus 121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~-~~ds~EG~~~~~~Y~~~~~P~i 199 (312)
+-.++++-...-|.++-| ||.++.+||.-|++|. -||. +|.--++.-=.-..+ -.|-+.=..+++.+.+..||+|
T Consensus 29 ~VeDLddkFkdnkdddiW-~VdFYAPWC~HCKkLe-PiWd--eVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI 104 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIW-FVDFYAPWCAHCKKLE-PIWD--EVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI 104 (468)
T ss_pred hhhhhhHHhhhcccCCeE-EEEeechhhhhccccc-chhH--HhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence 445666666667777777 6899999999999995 3552 343333322111111 2233344467788899999999
Q ss_pred EEEeCCCCeeEEEecCCCChHHHHHH
Q 021440 200 LVIDPITGQKICSWCGMINPQPLGEM 225 (312)
Q Consensus 200 ~IIdprTGe~v~~~~G~~~~~~fl~~ 225 (312)
.++- |-....+.|....+.+++-
T Consensus 105 k~~k---gd~a~dYRG~R~Kd~iieF 127 (468)
T KOG4277|consen 105 KFFK---GDHAIDYRGGREKDAIIEF 127 (468)
T ss_pred EEec---CCeeeecCCCccHHHHHHH
Confidence 9986 4455567777777766554
No 172
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=81.04 E-value=10 Score=27.37 Aligned_cols=70 Identities=9% Similarity=-0.109 Sum_probs=37.9
Q ss_pred EEeecCCCcccchhhcccCCCHHHHHHhhccEE-EEEeccCCh-hHHHHHHh--cCCCCCCeEEEEeCCCCeeEEEecCC
Q 021440 141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFI-FWQEYDDTS-EGWKVCSF--YNMDSIPAVLVIDPITGQKICSWCGM 216 (312)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFI-fwq~~~ds~-EG~~~~~~--Y~~~~~P~i~IIdprTGe~v~~~~G~ 216 (312)
+-+..+||..|+.+. .++.++-+ |..++.+.. +....... +.....|+| +++ .|+.+. .
T Consensus 3 ~ly~~~~C~~C~~~~----------~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~--~g~~l~----~ 65 (77)
T TIGR02200 3 TVYGTTWCGYCAQLM----------RTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFA--DGSFLT----N 65 (77)
T ss_pred EEEECCCChhHHHHH----------HHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EEC--CCeEec----C
Confidence 345567999999873 45555422 334455433 22223222 367889997 455 365432 2
Q ss_pred CChHHHHHHHH
Q 021440 217 INPQPLGEMLL 227 (312)
Q Consensus 217 ~~~~~fl~~L~ 227 (312)
.+..++.+.|+
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 35556665554
No 173
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=80.10 E-value=2.8 Score=35.14 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=29.4
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILL 44 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~l 44 (312)
.+.|.-.|+= +|.+.+.|+.-|+.+|+||-.||-.
T Consensus 85 eeDIkLV~eQ-a~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 85 EEDIKLVMEQ-AGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3456666677 8999999999999999999999854
No 174
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=79.80 E-value=5.9 Score=27.87 Aligned_cols=50 Identities=6% Similarity=0.028 Sum_probs=34.4
Q ss_pred EeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440 142 NLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (312)
Q Consensus 142 niq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I 201 (312)
-+..++|..|... ++++++ .|..+-++.+...-..+...+...++|.|.|
T Consensus 3 vy~~~~C~~C~~~----------~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 3 VYTKPGCPYCKKA----------KEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEESTTSHHHHHH----------HHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred EEEcCCCcCHHHH----------HHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 3455789999887 455554 4666666655544455666668899999986
No 175
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=79.58 E-value=6.9 Score=27.49 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHc--CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC---hhHHHHHHhcCCCCCC
Q 021440 123 GSFEKAKDAALAQ--DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT---SEGWKVCSFYNMDSIP 197 (312)
Q Consensus 123 gsf~~A~~~Ak~~--~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds---~EG~~~~~~Y~~~~~P 197 (312)
-|.++|++.|++. ++.+.+.+.... +.-..|++.+.. ++|. -
T Consensus 2 is~~~A~~~A~~~~~~~~~~~~~~~~~----------------------~~~~~Y~v~~~~~~~~~~~-----------~ 48 (64)
T PF03413_consen 2 ISEEQAVEIALKQYPGKVISVELEEDE----------------------NGRLVYEVEVVSDDDPDGG-----------E 48 (64)
T ss_dssp --HHHHHHHHHCCCCCEEEEEEEECC-----------------------TCEEEEEEEEEBTTSTTTE-----------E
T ss_pred cCHHHHHHHHHHHCCCCEEEEEEcccc----------------------CCcEEEEEEEEEEecCCCC-----------E
Confidence 4678999999998 444444444321 345567766554 2222 2
Q ss_pred eEEEEeCCCCeeEEEe
Q 021440 198 AVLVIDPITGQKICSW 213 (312)
Q Consensus 198 ~i~IIdprTGe~v~~~ 213 (312)
+-+.||+.||+.+..|
T Consensus 49 ~~v~VDa~tG~Il~~~ 64 (64)
T PF03413_consen 49 YEVYVDAYTGEILSSY 64 (64)
T ss_dssp EEEEEETTT--EEEEE
T ss_pred EEEEEECCCCeEEEeC
Confidence 6677999999998765
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=78.49 E-value=11 Score=39.07 Aligned_cols=86 Identities=17% Similarity=0.109 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCeEEEEe-ecCCCcccchhhcccCCCHHHHHHhhcc--EEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440 127 KAKDAALAQDKWLLVNL-QSTKEFSSLMLNRDTWGNEAVSQIISVN--FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 127 ~A~~~Ak~~~KwLLVni-q~~~~f~c~~lnRDvw~~~~V~~~i~~n--FIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId 203 (312)
+.++.-++-+|.+-|-+ .+++|..|....+- +.++..+| .-..-+ +..+-..++..|++-+.|+++|
T Consensus 466 ~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~------~~~~~~~~~~i~~~~i--~~~~~~~~~~~~~v~~vP~~~i-- 535 (555)
T TIGR03143 466 ELLEKIKKITKPVNIKIGVSLSCTLCPDVVLA------AQRIASLNPNVEAEMI--DVSHFPDLKDEYGIMSVPAIVV-- 535 (555)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCCcHHHHHH------HHHHHHhCCCceEEEE--ECcccHHHHHhCCceecCEEEE--
Confidence 33444455567776666 68899999987543 35555554 433333 4445568888999999999986
Q ss_pred CCCCeeEEEecCCCChHHHHHHH
Q 021440 204 PITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 204 prTGe~v~~~~G~~~~~~fl~~L 226 (312)
.|+.+ +.|.++.+++++.|
T Consensus 536 --~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 536 --DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred --CCEEE--EeeCCCHHHHHHhh
Confidence 35544 67988999988865
No 177
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=75.96 E-value=8.2 Score=28.44 Aligned_cols=57 Identities=7% Similarity=-0.038 Sum_probs=35.1
Q ss_pred EEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCCh--hHH-HHHHhcCCCCCCeEEEEe
Q 021440 141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS--EGW-KVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~--EG~-~~~~~Y~~~~~P~i~IId 203 (312)
+-+..+||+.|+.+.+-+ ..-. ++..|.++.++.+.. +-. .+.+.+....+|.| +|+
T Consensus 2 ~~f~~~~Cp~C~~~~~~L-~~~~----i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v-~i~ 61 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEIL-AKLN----VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI-FIN 61 (84)
T ss_pred EEEECCCChhHHHHHHHH-HHcC----CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE-EEC
Confidence 455678999999985321 1111 222377887776532 222 35667888899998 455
No 178
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=75.70 E-value=8 Score=31.38 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=34.4
Q ss_pred EEEEEeccCChhHHHHHHhcCCC--CCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440 172 FIFWQEYDDTSEGWKVCSFYNMD--SIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 172 FIfwq~~~ds~EG~~~~~~Y~~~--~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
..|.-+|.+...+ .+.++.+. .+|.|+|++-..+.+-.-..+.++++.+.+-+.+|++
T Consensus 50 i~Fv~~d~~~~~~--~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 50 INFLTADGDKFRH--PLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEEechHhhh--HHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 4444343333333 77778885 4999999997322222113466778777666666665
No 179
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=75.06 E-value=27 Score=29.76 Aligned_cols=96 Identities=9% Similarity=0.123 Sum_probs=65.7
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeC-------
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP------- 204 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdp------- 204 (312)
-..+.|.+.|-+-..|...|..|.- ++ ..+.+-+++.-+.|-++.+ +-..|.+.|.+...|++.+.=.
T Consensus 19 ~~t~~rlvViRFGr~~Dp~C~~mD~-~L--~~i~~~vsnfa~Iylvdid--eV~~~~~~~~l~~p~tvmfFfn~kHmkiD 93 (142)
T KOG3414|consen 19 LSTEERLVVIRFGRDWDPTCMKMDE-LL--SSIAEDVSNFAVIYLVDID--EVPDFVKMYELYDPPTVMFFFNNKHMKID 93 (142)
T ss_pred hcccceEEEEEecCCCCchHhhHHH-HH--HHHHHHHhhceEEEEEecc--hhhhhhhhhcccCCceEEEEEcCceEEEe
Confidence 4567899999999999999999942 11 1233344444467777666 6778889999999998876542
Q ss_pred -CCCeeEEEecCCC-ChHHHHHHHHHHHhhC
Q 021440 205 -ITGQKICSWCGMI-NPQPLGEMLLPFMDRS 233 (312)
Q Consensus 205 -rTGe~v~~~~G~~-~~~~fl~~L~~fl~~~ 233 (312)
-||.- ..|+|++ +.++||+.+.......
T Consensus 94 ~gtgdn-~Kin~~~~~kq~~Idiie~iyRga 123 (142)
T KOG3414|consen 94 LGTGDN-NKINFAFEDKQEFIDIIETIYRGA 123 (142)
T ss_pred eCCCCC-ceEEEEeccHHHHHHHHHHHHHhh
Confidence 22221 1256655 7889999888776543
No 180
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=70.50 E-value=43 Score=28.58 Aligned_cols=93 Identities=10% Similarity=0.074 Sum_probs=61.1
Q ss_pred HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE-EE--------e
Q 021440 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL-VI--------D 203 (312)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~-II--------d 203 (312)
.+++|.|+|-+-..|...|..|..-+ ..+..-+++..++|-++.+ +-..|.+.|.+. -|.-+ +. |
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~mDeiL---~~~a~~v~~~a~IY~vDi~--~Vpdfn~~yel~-dP~tvmFF~rnkhm~vD 90 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQMDEIL---YKIAEKVKNFAVIYLVDID--EVPDFNQMYELY-DPCTVMFFFRNKHMMVD 90 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETT--TTHCCHHHTTS--SSEEEEEEETTEEEEEE
T ss_pred ccCceEEEEEeCCCCCccHHHHHHHH---HHHHHHhhcceEEEEEEcc--cchhhhcccccC-CCeEEEEEecCeEEEEE
Confidence 57799999999999999999996433 2345566777899988777 445577888886 56433 22 3
Q ss_pred CCCCeeEEEecCCC-ChHHHHHHHHHHHhh
Q 021440 204 PITGQKICSWCGMI-NPQPLGEMLLPFMDR 232 (312)
Q Consensus 204 prTGe~v~~~~G~~-~~~~fl~~L~~fl~~ 232 (312)
--||..-+ |.+.+ +.++||..+..+...
T Consensus 91 ~GtgnnnK-in~~~~~kqe~iDiie~iyrg 119 (133)
T PF02966_consen 91 FGTGNNNK-INWAFEDKQEFIDIIETIYRG 119 (133)
T ss_dssp SSSSSSSS-BCS--SCHHHHHHHHHHHHHH
T ss_pred ecCCCccE-EEEEcCcHHHHHHHHHHHHHH
Confidence 33443321 55655 689999988877543
No 181
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=70.45 E-value=15 Score=25.97 Aligned_cols=45 Identities=22% Similarity=0.146 Sum_probs=36.8
Q ss_pred chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440 5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (312)
Q Consensus 5 s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~ 49 (312)
+.-.+++|.+-..+-.|.+.++-++=|+++|-|+..||+..+...
T Consensus 6 ~~vPedlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T PF11547_consen 6 SQVPEDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp GGS-HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhccc
Confidence 334678999999988999999999999999999999999887643
No 182
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=70.41 E-value=12 Score=32.02 Aligned_cols=67 Identities=6% Similarity=-0.172 Sum_probs=45.4
Q ss_pred cCCeEEEEee-cCCCcccchh-hcccCCCHHHHHHhhccE-EEEEeccCChhHHH-HHHhcCCCCCCeEEEEeC
Q 021440 135 QDKWLLVNLQ-STKEFSSLML-NRDTWGNEAVSQIISVNF-IFWQEYDDTSEGWK-VCSFYNMDSIPAVLVIDP 204 (312)
Q Consensus 135 ~~KwLLVniq-~~~~f~c~~l-nRDvw~~~~V~~~i~~nF-Ifwq~~~ds~EG~~-~~~~Y~~~~~P~i~IIdp 204 (312)
.+||++|+++ ..+|+.|..= -+.. ++...+|-+.+. .++.++.|+++..+ ++..+++. .|+-++-|+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~--~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~-~~f~lLsD~ 98 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGY--VENADELKAKGVDEVICVSVNDPFVMKAWGKALGAK-DKIRFLADG 98 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHH--HHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCC-CcEEEEECC
Confidence 5678777777 4688988863 3332 344566777788 59999999988775 77777662 234455565
No 183
>CHL00098 tsf elongation factor Ts
Probab=70.25 E-value=6.2 Score=35.89 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=34.8
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440 10 SRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (312)
Q Consensus 10 ~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~ 49 (312)
++|.+.-+. ||+..-.|++-|+.++||++.|++..-..+
T Consensus 3 ~~ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g 41 (200)
T CHL00098 3 ELVKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKG 41 (200)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 578888899 999999999999999999999998876644
No 184
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=69.88 E-value=17 Score=26.71 Aligned_cols=55 Identities=9% Similarity=0.004 Sum_probs=34.3
Q ss_pred EEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCCh-hHH--HHHHhcCCCCCCeEEEEe
Q 021440 141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS-EGW--KVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~-EG~--~~~~~Y~~~~~P~i~IId 203 (312)
+-+..++|+.|..+.+ +.+-++..|-++.++.+.. +.. .+.+.+...++|.| +++
T Consensus 3 ~~y~~~~Cp~C~~~~~-------~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v-~~~ 60 (82)
T cd03419 3 VVFSKSYCPYCKRAKS-------LLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNV-FIG 60 (82)
T ss_pred EEEEcCCCHHHHHHHH-------HHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE-EEC
Confidence 4455679999998832 2222233577777776643 222 35567788899998 455
No 185
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=69.06 E-value=6.4 Score=37.80 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=35.9
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~ 49 (312)
.++|.+..+. ||+..-.|++-|+.++||+|.|+..-=..|
T Consensus 5 a~~IK~LRe~-Tgagm~dCKkAL~e~~gDiekAi~~LRkkG 44 (290)
T TIGR00116 5 AQLVKELRER-TGAGMMDCKKALTEANGDFEKAIKNLRESG 44 (290)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 3578999999 999999999999999999999999886654
No 186
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=68.03 E-value=7.4 Score=35.29 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=35.8
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~ 49 (312)
.++|.+..+. ||+..-.|++-|+.++||++.|+...-..+
T Consensus 5 a~~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g 44 (198)
T PRK12332 5 AKLVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKG 44 (198)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 3678899999 999999999999999999999999887654
No 187
>PRK09377 tsf elongation factor Ts; Provisional
Probab=66.88 E-value=8.1 Score=37.10 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~ 49 (312)
.++|.+..+. ||+..-.|++-|+.+|||+|.|+..--..|
T Consensus 6 ~~~IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G 45 (290)
T PRK09377 6 AALVKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKKG 45 (290)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 4688899999 999999999999999999999999887654
No 188
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=65.95 E-value=5.7 Score=41.42 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=70.9
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-----c-EEEEEeccCChhHHHHHHhcCCCC
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-----N-FIFWQEYDDTSEGWKVCSFYNMDS 195 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-----n-FIfwq~~~ds~EG~~~~~~Y~~~~ 195 (312)
..+|..|+..++ |--||-+.++||..|+.|- |..++|-+. . ..+..+|--..+...+|+.+++..
T Consensus 46 ~~tf~~~v~~~~---~~~lVEFy~swCGhCr~FA------Ptfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 46 VDTFNAAVFGSR---KAKLVEFYNSWCGHCRAFA------PTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred hhhhHHHhcccc---hhHHHHHHHhhhhhhhhcc------hHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 445666666555 4558999999999999983 555555442 2 346677888899999999999999
Q ss_pred CCeEEEEeCCCCee--EEEecCCCChHHHHHHHHHHHhh
Q 021440 196 IPAVLVIDPITGQK--ICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 196 ~P~i~IIdprTGe~--v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
||+|-..-|.+... =..+.|...+.+..+.|..-|.+
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~ 155 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAE 155 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHH
Confidence 99999997742110 01245666677777776666543
No 189
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=65.92 E-value=39 Score=34.47 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCeE-EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeC
Q 021440 126 EKAKDAALAQDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204 (312)
Q Consensus 126 ~~A~~~Ak~~~KwL-LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdp 204 (312)
++.++..++-+|.+ +.-+.+++|+.|...-+-. .-....+.|..+.-+ |..+-..++..|++.+.|++.| +
T Consensus 105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~----~~~a~~~~~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i-~- 176 (517)
T PRK15317 105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVVQAL----NLMAVLNPNITHTMI--DGALFQDEVEARNIMAVPTVFL-N- 176 (517)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHH----HHHHHhCCCceEEEE--EchhCHhHHHhcCCcccCEEEE-C-
Confidence 34455555555555 5555677899998653322 111223444444443 6777778999999999999965 4
Q ss_pred CCCeeEEEecCCCChHHHHHHHHH
Q 021440 205 ITGQKICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 205 rTGe~v~~~~G~~~~~~fl~~L~~ 228 (312)
|+.+ +.|..+.++|++.|..
T Consensus 177 --~~~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 177 --GEEF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred --CcEE--EecCCCHHHHHHHHhc
Confidence 4443 7788888888888765
No 190
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=65.33 E-value=11 Score=26.45 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=21.8
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021440 20 VGASGVTAIECLQATSWKLDEAILLFF 46 (312)
Q Consensus 20 t~~~~~~A~~~Le~~~wdLe~Av~lff 46 (312)
...+...-.+||.+.+||++.|+.++-
T Consensus 27 ~~~~d~~llRFLRARkf~v~~A~~mL~ 53 (55)
T PF03765_consen 27 EDHDDNFLLRFLRARKFDVEKAFKMLK 53 (55)
T ss_dssp SS-SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 455779999999999999999998763
No 191
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=63.97 E-value=4.5 Score=38.68 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=34.3
Q ss_pred HHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440 11 RISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (312)
Q Consensus 11 ~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~ 49 (312)
.+-.|.++|+.+++..|..+|.-..|+++.|+..||...
T Consensus 27 ~ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~se 65 (349)
T KOG2756|consen 27 LLCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEPE 65 (349)
T ss_pred HHHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCce
Confidence 445667777999999999999999999999999999853
No 192
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=62.14 E-value=31 Score=26.54 Aligned_cols=98 Identities=10% Similarity=0.081 Sum_probs=58.1
Q ss_pred cccccHHHHHHHHHHcC--CeEEEEeecCCCccc----ch--------hhcccCCCHHHHHHhhccEEEEEeccCChhHH
Q 021440 120 MFNGSFEKAKDAALAQD--KWLLVNLQSTKEFSS----LM--------LNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW 185 (312)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~--KwLLVniq~~~~f~c----~~--------lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~ 185 (312)
-...+..+|+..-+..+ .+++|- .+ ..+-- .. +.+.++.+..|.++++.+++....+..-.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~Vv-d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 84 (119)
T cd04598 7 SPDTTVNDVLERFERDPDLSALAVV-DD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPLEEVS 84 (119)
T ss_pred CCCCcHHHHHHHHHhCCCccEEEEE-EC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCHHHHH
Confidence 34556888887766554 344332 12 32210 01 12233456678999998888887766667777
Q ss_pred HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHH
Q 021440 186 KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGE 224 (312)
Q Consensus 186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~ 224 (312)
.+...+.....+.+.+|+. .|+. -|.++..+++.
T Consensus 85 ~~~~~~~~~~~~~~~vv~~-~~~~----~Gvvs~~di~~ 118 (119)
T cd04598 85 RLATGRDSQNLYDGFIVTE-EGRY----LGIGTVKDLLR 118 (119)
T ss_pred HHHHcCCcccccccEEEee-CCeE----EEEEEHHHHhc
Confidence 7777776655555567774 3654 46677766653
No 193
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=62.10 E-value=13 Score=35.81 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=35.8
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~ 49 (312)
-++|....+. ||+..-.|++-|+.+++|+|.||...=..|
T Consensus 6 a~~VKeLRe~-TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG 45 (296)
T COG0264 6 AALVKELREK-TGAGMMDCKKALEEANGDIEKAIEWLREKG 45 (296)
T ss_pred HHHHHHHHHH-hCCcHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 4678888899 999999999999999999999999887654
No 194
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=61.66 E-value=29 Score=26.76 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=32.8
Q ss_pred CeEEEEeec----CCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChhHH-HHHHhcCCCCCCeEEEEe
Q 021440 137 KWLLVNLQS----TKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGW-KVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 137 KwLLVniq~----~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~EG~-~~~~~Y~~~~~P~i~IId 203 (312)
+.++|+..+ ++|..|... +++++++ |...-+..+ ++.+ .+.......++|.| +|+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~a----------k~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~v-fi~ 70 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKV----------VQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQL-YVN 70 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHH----------HHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEE-EEC
Confidence 456666665 688888876 4555543 444443333 3333 34455667889998 556
No 195
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.54 E-value=4.7 Score=38.06 Aligned_cols=42 Identities=19% Similarity=0.459 Sum_probs=36.1
Q ss_pred CchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHH-HHHHH
Q 021440 4 ESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEA-ILLFF 46 (312)
Q Consensus 4 ~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~A-v~lff 46 (312)
+...+.+++.+||.. |..+..+++.+|.+++|+++.| ...||
T Consensus 4 lk~~~~d~~~~~~~~-~~~~~~~s~~~~~~~dw~~~~~~~~s~~ 46 (260)
T KOG3077|consen 4 LKSSQKDKFEQFMSF-TASRKKTSLSCLAACDWNLKYAFNDSYY 46 (260)
T ss_pred cchhHHHHHHhhccc-ccccchhhhhhhcccccccchhcccchh
Confidence 334488999999999 9999999999999999999999 44444
No 196
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=59.89 E-value=35 Score=23.81 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=29.4
Q ss_pred EEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCC-hh-HHHHHHhcCCCCCCeEEE
Q 021440 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDT-SE-GWKVCSFYNMDSIPAVLV 201 (312)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds-~E-G~~~~~~Y~~~~~P~i~I 201 (312)
++-++.+||..|+.+ +.++++ ++-+-.++.+. .+ ...+........+|.|.+
T Consensus 2 v~l~~~~~c~~c~~~----------~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKAT----------KRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHH----------HHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 455677899999875 333333 23333344443 22 234444446789998864
No 197
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=58.47 E-value=13 Score=36.16 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=35.2
Q ss_pred hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440 7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA 47 (312)
Q Consensus 7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~ 47 (312)
.+.++|.+.-+= ||.+...|++-|+.|||||..|..---.
T Consensus 45 ~~~allk~LR~k-Tgas~~ncKkALee~~gDl~~A~~~L~k 84 (340)
T KOG1071|consen 45 SSKALLKKLREK-TGASMVNCKKALEECGGDLVLAEEWLHK 84 (340)
T ss_pred ccHHHHHHHHHH-cCCcHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 578899999999 9999999999999999999998764433
No 198
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=57.14 E-value=37 Score=25.88 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=28.0
Q ss_pred eecCCCcccchhhcccCCCHHHHHHhhcc------EEEEEeccCC--hhHHHHHHhcCC--CCCCeEEEEe
Q 021440 143 LQSTKEFSSLMLNRDTWGNEAVSQIISVN------FIFWQEYDDT--SEGWKVCSFYNM--DSIPAVLVID 203 (312)
Q Consensus 143 iq~~~~f~c~~lnRDvw~~~~V~~~i~~n------FIfwq~~~ds--~EG~~~~~~Y~~--~~~P~i~IId 203 (312)
++.++|..|.... +++.+. +-+.-++++. .+-..+...+.. .+.|.|. ||
T Consensus 5 ys~~~Cp~C~~ak----------~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if-i~ 64 (86)
T TIGR02183 5 FGRPGCPYCVRAK----------QLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF-VD 64 (86)
T ss_pred EeCCCCccHHHHH----------HHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE-EC
Confidence 4456899998874 444432 2333334432 122335556654 6899995 55
No 199
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=54.48 E-value=52 Score=24.54 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=52.8
Q ss_pred CccccccccHHHHHHHHHHcC-CeEEEEeecCCCcccchhhccc---CCCHHHHHHhhccEEEEEeccCChhHHHHHHhc
Q 021440 116 PFHVMFNGSFEKAKDAALAQD-KWLLVNLQSTKEFSSLMLNRDT---WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFY 191 (312)
Q Consensus 116 P~~l~~~gsf~~A~~~Ak~~~-KwLLVniq~~~~f~c~~lnRDv---w~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y 191 (312)
++.+-...+..+|++.-++.+ ++++|. . ...+-.-.--+++ +.+..+.++++.+++.+..+..-.+..+....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 80 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVV-E-DGKLVGIITSRDVRRAHPNRLVADAMTREVVTISPEASLLEAKRLMEEK 80 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEE-E-CCEEEEEEehHHhhcccccCCHHHHccCCCEEECCCCCHHHHHHHHHHc
Confidence 333334556888887765544 566553 2 2333211111111 124457888888887776555445555555444
Q ss_pred CCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 192 NMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 192 ~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
.++++.|+|. |+. .|.++..+++
T Consensus 81 ---~~~~~~Vv~~--~~~----~G~it~~~l~ 103 (105)
T cd04599 81 ---KIERLPVLRE--RKL----VGIITKGTIA 103 (105)
T ss_pred ---CCCEeeEEEC--CEE----EEEEEHHHhc
Confidence 4677888884 653 4555555543
No 200
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=54.37 E-value=81 Score=32.20 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCeE-EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeC
Q 021440 126 EKAKDAALAQDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204 (312)
Q Consensus 126 ~~A~~~Ak~~~KwL-LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdp 204 (312)
++.++..++-+|.+ +--+.++.|+.|...-+-. .-....+.|..+. + +|..+-..++..|++.+.|++.| +
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~----~~~a~~~p~i~~~-~-id~~~~~~~~~~~~v~~VP~~~i-~- 177 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQAL----NQMALLNPNISHT-M-IDGALFQDEVEALGIQGVPAVFL-N- 177 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHH----HHHHHhCCCceEE-E-EEchhCHHHHHhcCCcccCEEEE-C-
Confidence 44455555555554 4445566899997642211 1112223333333 2 57777788999999999999975 4
Q ss_pred CCCeeEEEecCCCChHHHHHHHHHH
Q 021440 205 ITGQKICSWCGMINPQPLGEMLLPF 229 (312)
Q Consensus 205 rTGe~v~~~~G~~~~~~fl~~L~~f 229 (312)
|+.+ +.|..+.++|++.|...
T Consensus 178 --~~~~--~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 178 --GEEF--HNGRMDLAELLEKLEET 198 (515)
T ss_pred --CcEE--EecCCCHHHHHHHHhhc
Confidence 4433 77988889998888765
No 201
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=53.95 E-value=44 Score=24.05 Aligned_cols=50 Identities=6% Similarity=0.016 Sum_probs=28.7
Q ss_pred eecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCC-CCCeEEEEe
Q 021440 143 LQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMD-SIPAVLVID 203 (312)
Q Consensus 143 iq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~-~~P~i~IId 203 (312)
+..++|..|+.. ++++++ .|....++.+...-..+...+... .+|.| +|+
T Consensus 5 y~~~~Cp~C~~a----------k~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v-~i~ 58 (75)
T cd03418 5 YTKPNCPYCVRA----------KALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQI-FIG 58 (75)
T ss_pred EeCCCChHHHHH----------HHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEE-EEC
Confidence 445689999876 444444 355554443322333455556655 89977 455
No 202
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=52.56 E-value=58 Score=28.68 Aligned_cols=24 Identities=13% Similarity=0.402 Sum_probs=13.1
Q ss_pred cccchhh-cccCCCHHHHHHhhccE
Q 021440 149 FSSLMLN-RDTWGNEAVSQIISVNF 172 (312)
Q Consensus 149 f~c~~ln-RDvw~~~~V~~~i~~nF 172 (312)
|+|..|. .+-=+++++++|-..||
T Consensus 63 FPcNQF~~QEPg~~eEI~~fC~~~Y 87 (162)
T COG0386 63 FPCNQFGGQEPGSDEEIAKFCQLNY 87 (162)
T ss_pred ccccccccCCCCCHHHHHHHHHhcc
Confidence 4555543 44445666666666554
No 203
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=51.49 E-value=84 Score=24.67 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=32.4
Q ss_pred CCeEEEEeec----CCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccC-ChhHHH-HHHhcCCCCCCeEEEEe
Q 021440 136 DKWLLVNLQS----TKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDD-TSEGWK-VCSFYNMDSIPAVLVID 203 (312)
Q Consensus 136 ~KwLLVniq~----~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~d-s~EG~~-~~~~Y~~~~~P~i~IId 203 (312)
.+-|+|+..+ ++|+.|+.. +++++++ .=|.-++++ .++.+. +.......++|.|. |+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~a----------k~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf-i~ 74 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARA----------VQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY-VK 74 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHH----------HHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE-EC
Confidence 3456777664 789999877 4555443 223334443 244443 33444557899985 55
No 204
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=51.03 E-value=43 Score=25.28 Aligned_cols=79 Identities=13% Similarity=-0.000 Sum_probs=47.6
Q ss_pred EEEeecCCCcccchhhcccCCCHHHHHHh-hccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCC
Q 021440 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN 218 (312)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~ 218 (312)
|+.+..++|.-|.... +.+..+. ...|-+-.+|.+ +...+...|.. ..|.+.+-++++........+.++
T Consensus 2 l~l~~k~~C~LC~~a~------~~L~~~~~~~~~~l~~vDI~--~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAK------EILEEVAAEFPFELEEVDID--EDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHH------HHHHHCCTTSTCEEEEEETT--TTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHH------HHHHHHHhhcCceEEEEECC--CCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 4556778888887662 1222222 344778888888 44447888985 799999888643222233455678
Q ss_pred hHHHHHHHH
Q 021440 219 PQPLGEMLL 227 (312)
Q Consensus 219 ~~~fl~~L~ 227 (312)
.+.+.+.|+
T Consensus 73 ~~~L~~~L~ 81 (81)
T PF05768_consen 73 EEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 887766653
No 205
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=50.16 E-value=21 Score=24.28 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=16.7
Q ss_pred EEEeCCCCeeEEE----ecCCCChHHH
Q 021440 200 LVIDPITGQKICS----WCGMINPQPL 222 (312)
Q Consensus 200 ~IIdprTGe~v~~----~~G~~~~~~f 222 (312)
.||||.||+++.+ -.|.++++-.
T Consensus 12 Giidp~tg~~lsv~~A~~~glId~~~~ 38 (45)
T PF00681_consen 12 GIIDPETGERLSVEEAIQRGLIDSDTA 38 (45)
T ss_dssp SEEETTTTEEEEHHHHHHTTSS-HHHH
T ss_pred eEEeCCCCeEEcHHHHHHCCCcCHHHH
Confidence 4899999999876 3577777643
No 206
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=50.11 E-value=67 Score=22.05 Aligned_cols=48 Identities=4% Similarity=-0.033 Sum_probs=27.7
Q ss_pred ecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCChh--HHHHHHhcCCCCCCeEEE
Q 021440 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTSE--GWKVCSFYNMDSIPAVLV 201 (312)
Q Consensus 144 q~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~E--G~~~~~~Y~~~~~P~i~I 201 (312)
..++|..|+.. +.+++++ .-+..++.+... ...+.......++|++.+
T Consensus 6 ~~~~Cp~C~~~----------~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 6 SKSTCPYCKRA----------KRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred ECCCCHHHHHH----------HHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 45689999877 3444432 223344444432 344555667788998853
No 207
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=50.01 E-value=58 Score=24.46 Aligned_cols=69 Identities=7% Similarity=0.123 Sum_probs=37.0
Q ss_pred EEEeecCCCcccchhhcccCCCHHHHHHhhc------c--EEEEEeccCChhHHHHHHhcC--CCCCCeEEEEeCCCCee
Q 021440 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISV------N--FIFWQEYDDTSEGWKVCSFYN--MDSIPAVLVIDPITGQK 209 (312)
Q Consensus 140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~------n--FIfwq~~~ds~EG~~~~~~Y~--~~~~P~i~IIdprTGe~ 209 (312)
++-+..++|..|... ++++.+ + |.+..++.+..+...+...+. ...+|.|. || |+.
T Consensus 3 v~iy~~~~C~~C~~a----------~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if-i~---g~~ 68 (85)
T PRK11200 3 VVIFGRPGCPYCVRA----------KELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF-VD---QKH 68 (85)
T ss_pred EEEEeCCCChhHHHH----------HHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE-EC---CEE
Confidence 344556789999887 344444 3 333333333223334554444 37899986 45 554
Q ss_pred EEEecCCCChHHHHHHHHH
Q 021440 210 ICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 210 v~~~~G~~~~~~fl~~L~~ 228 (312)
+ .| -+++.+.+.+
T Consensus 69 i---gg---~~~~~~~~~~ 81 (85)
T PRK11200 69 I---GG---CTDFEAYVKE 81 (85)
T ss_pred E---cC---HHHHHHHHHH
Confidence 3 33 3455555443
No 208
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=49.77 E-value=42 Score=24.65 Aligned_cols=49 Identities=10% Similarity=0.016 Sum_probs=29.6
Q ss_pred ecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 144 q~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId 203 (312)
..++|..|... +++++++ |-...++.+...-.++...+...++|.| +|+
T Consensus 5 ~~~~Cp~C~~a----------~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i-~i~ 56 (79)
T TIGR02181 5 TKPYCPYCTRA----------KALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQI-FIG 56 (79)
T ss_pred ecCCChhHHHH----------HHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEE-EEC
Confidence 34689999876 3444443 4444444333334456666677889998 444
No 209
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=49.01 E-value=55 Score=26.55 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=34.0
Q ss_pred HHHHHhh-ccEEEEEeccCChhHHHHHHhcCCC--C--CCeEEEEeCCCCeeEEEecCCC-ChHHHHHHHH
Q 021440 163 AVSQIIS-VNFIFWQEYDDTSEGWKVCSFYNMD--S--IPAVLVIDPITGQKICSWCGMI-NPQPLGEMLL 227 (312)
Q Consensus 163 ~V~~~i~-~nFIfwq~~~ds~EG~~~~~~Y~~~--~--~P~i~IIdprTGe~v~~~~G~~-~~~~fl~~L~ 227 (312)
+|.+-.+ ..++|.-++.+ +-.....++.+. . +|.++|++. .+.+- ...+-+ +++.+.+-++
T Consensus 42 ~vAk~fk~gki~Fv~~D~~--~~~~~l~~fgl~~~~~~~P~~~i~~~-~~~KY-~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 42 KVAKDFPDRKLNFAVADKE--DFSHELEEFGLDFSGGEKPVVAIRTA-KGKKY-VMEEEFSDVDALEEFLE 108 (111)
T ss_pred HHHHHCcCCeEEEEEEcHH--HHHHHHHHcCCCcccCCCCEEEEEeC-CCCcc-CCCcccCCHHHHHHHHH
Confidence 4444455 45555555444 333477888885 4 999999995 34222 134445 5555443333
No 210
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=48.70 E-value=63 Score=23.43 Aligned_cols=49 Identities=2% Similarity=-0.081 Sum_probs=29.9
Q ss_pred ecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 144 q~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId 203 (312)
+.++|..|++. +++++++ |...-+..+...-..+...+....+|.| +++
T Consensus 7 ~~~~C~~C~ka----------~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v-~i~ 58 (73)
T cd03027 7 SRLGCEDCTAV----------RLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQI-FFN 58 (73)
T ss_pred ecCCChhHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEE-EEC
Confidence 34679888876 4555554 5555444333333456666677889998 455
No 211
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.43 E-value=43 Score=30.66 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=37.2
Q ss_pred hHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecC--CCChHHHHHHHHHHHh
Q 021440 183 EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCG--MINPQPLGEMLLPFMD 231 (312)
Q Consensus 183 EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G--~~~~~~fl~~L~~fl~ 231 (312)
+++++++...+..||++++.+ .|++-..=.| +.+++.++..|.+-+.
T Consensus 162 ~~r~l~~rlg~~GfPTl~le~--ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 162 DSRRLMQRLGAAGFPTLALER--NGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHHHhccCCCCeeeeee--CCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 457899999999999999999 4665444466 4689999999987653
No 212
>PRK10329 glutaredoxin-like protein; Provisional
Probab=48.09 E-value=1.2e+02 Score=22.98 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=38.0
Q ss_pred ecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccC-ChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHH
Q 021440 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDD-TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQP 221 (312)
Q Consensus 144 q~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~d-s~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~ 221 (312)
..++|..|+.. ++++.++ .-|--++++ .++.............|.|.+ + + ..|.|+ +++.
T Consensus 7 t~~~Cp~C~~a----------k~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~---~---~~~~Gf-~~~~ 68 (81)
T PRK10329 7 TRNDCVQCHAT----------KRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA-G---D---LSWSGF-RPDM 68 (81)
T ss_pred eCCCCHhHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE-C---C---EEEecC-CHHH
Confidence 44689999876 4555543 333344544 344555455556678999964 3 2 236664 6666
Q ss_pred HHHHH
Q 021440 222 LGEML 226 (312)
Q Consensus 222 fl~~L 226 (312)
+.+..
T Consensus 69 l~~~~ 73 (81)
T PRK10329 69 INRLH 73 (81)
T ss_pred HHHHH
Confidence 65544
No 213
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=47.76 E-value=61 Score=23.94 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=36.5
Q ss_pred hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440 7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN 49 (312)
Q Consensus 7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~ 49 (312)
.-...|+..-+||++.+++.---.|..||-|-+.|++..+...
T Consensus 4 ~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~qD 46 (60)
T PF06972_consen 4 ASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQD 46 (60)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 4567899999995555999999999999999999999888753
No 214
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=47.47 E-value=22 Score=31.26 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHH
Q 021440 184 GWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEM 225 (312)
Q Consensus 184 G~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~ 225 (312)
...++..+.+...|+|++-| |.+ ..|+.++++|.+.
T Consensus 161 ~~~l~~~~gi~gtPtii~~~---G~~---~~G~~~~~~l~~~ 196 (197)
T cd03020 161 NLALGRQLGVNGTPTIVLAD---GRV---VPGAPPAAQLEAL 196 (197)
T ss_pred HHHHHHHcCCCcccEEEECC---CeE---ecCCCCHHHHHhh
Confidence 34566778889999997434 654 4788887776554
No 215
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=46.55 E-value=40 Score=31.37 Aligned_cols=114 Identities=14% Similarity=0.236 Sum_probs=66.2
Q ss_pred cCCCccccccc----cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHH
Q 021440 113 YRPPFHVMFNG----SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188 (312)
Q Consensus 113 frPP~~l~~~g----sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~ 188 (312)
|+|-|...|.. .|-+++..-. .--.|+|-|+-+...-|..||+-+-|-.. ++=.-.| ..+-.... -..
T Consensus 133 ~gp~~~~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAA--eyP~vKF--ckikss~~---gas 204 (273)
T KOG3171|consen 133 FGPRYGFVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAA--EYPIVKF--CKIKSSNT---GAS 204 (273)
T ss_pred cCCccceEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhc--cCCceeE--EEeeeccc---cch
Confidence 57887665533 3555554321 12357788888899999999987643211 1111112 22211111 123
Q ss_pred HhcCCCCCCeEEEEeCCCCeeEEEecCC---CChHHHHHHHHHHHhhCCCC
Q 021440 189 SFYNMDSIPAVLVIDPITGQKICSWCGM---INPQPLGEMLLPFMDRSPRK 236 (312)
Q Consensus 189 ~~Y~~~~~P~i~IIdprTGe~v~~~~G~---~~~~~fl~~L~~fl~~~~~~ 236 (312)
..+..+..|+++|.. .|+.+..+... ..-+=|.-.|..||.++.+.
T Consensus 205 ~~F~~n~lP~LliYk--gGeLIgNFv~va~qlgedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 205 DRFSLNVLPTLLIYK--GGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred hhhcccCCceEEEee--CCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence 445678899999998 48876553211 12233567799999999886
No 216
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=45.69 E-value=89 Score=27.14 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=12.1
Q ss_pred CeEEEEeCCCCeeEEEecC
Q 021440 197 PAVLVIDPITGQKICSWCG 215 (312)
Q Consensus 197 P~i~IIdprTGe~v~~~~G 215 (312)
..+.+||| .|+.+..+++
T Consensus 156 ~~~~Lidp-~G~i~~~y~~ 173 (174)
T PF02630_consen 156 AFIYLIDP-DGRIRAIYNL 173 (174)
T ss_dssp SEEEEE-T-TSEEEEEECS
T ss_pred cEEEEEcC-CCcEEEEEcc
Confidence 57788888 5887776654
No 217
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=45.29 E-value=41 Score=22.75 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=40.7
Q ss_pred HHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440 164 VSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL 227 (312)
Q Consensus 164 V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~ 227 (312)
|++++..+++...-+..-.+..+....++ +.++.|+|. .|+. .|.++..+++..|.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~---~~~~~V~d~-~~~~----~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNG---ISRLPVVDE-DGKL----VGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHT---SSEEEEEST-TSBE----EEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcC---CcEEEEEec-CCEE----EEEEEHHHHHhhhh
Confidence 56778888888887766677777777665 778888985 3664 46677888777664
No 218
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=45.20 E-value=34 Score=32.76 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440 9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (312)
Q Consensus 9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~ 48 (312)
+..+.-.+++ ||++.++|.++|+.+++++-.||-+.+..
T Consensus 234 dRa~RIv~~a-T~~~~~~A~~~L~~~~~~vK~AIvm~~~~ 272 (298)
T COG2103 234 DRAVRIVMEA-TGCSAEEAEALLEEAGGNVKLAIVMLLTG 272 (298)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCccHhHHHHHHhC
Confidence 4456677888 99999999999999999999999998764
No 219
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=45.01 E-value=35 Score=26.96 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=30.5
Q ss_pred EEEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChhHHHHHH----hcCCCCCCeEEEEe
Q 021440 139 LLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCS----FYNMDSIPAVLVID 203 (312)
Q Consensus 139 LLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~EG~~~~~----~Y~~~~~P~i~IId 203 (312)
|.||- .++|+.|....+ +++++ |-.+.++. .+++..+.. .....++|.| +|+
T Consensus 10 Vvvys-k~~Cp~C~~ak~----------~L~~~~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~V-fi~ 68 (99)
T TIGR02189 10 VVIFS-RSSCCMCHVVKR----------LLLTLGVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAV-FVG 68 (99)
T ss_pred EEEEE-CCCCHHHHHHHH----------HHHHcCCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeE-EEC
Confidence 44444 468999998854 55544 44444432 455554433 3346789998 555
No 220
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=44.29 E-value=97 Score=23.34 Aligned_cols=96 Identities=19% Similarity=0.172 Sum_probs=52.6
Q ss_pred CccccccccHHHHHHHHHHcCC-eEEEEeecCCCcc-------cc-hhhcccCCCHHHHHHhhccEEEEEeccCChhHHH
Q 021440 116 PFHVMFNGSFEKAKDAALAQDK-WLLVNLQSTKEFS-------SL-MLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWK 186 (312)
Q Consensus 116 P~~l~~~gsf~~A~~~Ak~~~K-wLLVniq~~~~f~-------c~-~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~ 186 (312)
+..+-...++.+|....++.+. +++|. .. ..+- .. .++++ |.+..+.+++..+++++..+..-.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~-~~~~G~v~~~dl~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~l~~~~~ 80 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVV-EG-GRVVGIISRRDVEKALRHG-LGHAPVKDYMSTDVVTVPPDTPLSEVQE 80 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEe-eC-CEEEEEEEHHHHHHHHhcc-cccCcHHHHhcCCCEEECCCCcHHHHHH
Confidence 3334445578899888776654 33332 22 2221 00 11121 2345688888888887765555556666
Q ss_pred HHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 187 VCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 187 ~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
....++ ..++.|++ .|+.+ |.++..+++
T Consensus 81 ~~~~~~---~~~~~V~~--~~~~~----Gvvt~~di~ 108 (110)
T cd04595 81 LMVEHD---IGRVPVVE--DGRLV----GIVTRTDLL 108 (110)
T ss_pred HHHHcC---CCeeEEEe--CCEEE----EEEEhHHhh
Confidence 666554 45667777 46644 445555543
No 221
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=42.83 E-value=1e+02 Score=23.26 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=51.2
Q ss_pred cccHHHHHHHHHHcC------CeEEEEeecCCCcccchhhcccC---CCHHHHHHhhccEEEEEeccCChhHHHHHHhcC
Q 021440 122 NGSFEKAKDAALAQD------KWLLVNLQSTKEFSSLMLNRDTW---GNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYN 192 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~------KwLLVniq~~~~f~c~~lnRDvw---~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~ 192 (312)
.-++.+|++..++.+ .+++| +.+...+---.-.+++. .+..+.++++.+++....+..-.+..+.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v-vd~~~~~~G~v~~~~l~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~- 82 (109)
T cd04606 5 DWTVGEALEYLRRNADDPETIYYIYV-VDEEGRLLGVVSLRDLLLADPDTPVSDIMDTDVISVSADDDQEEVARLFEKY- 82 (109)
T ss_pred cCcHHHHHHHHHhccCcccceeEEEE-ECCCCCEEEEEEHHHHhcCCCcchHHHHhCCCCeEEcCCCCHHHHHHHHHHc-
Confidence 346788887766555 33332 22223332111123322 23468888888877776544445555555444
Q ss_pred CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHH
Q 021440 193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEM 225 (312)
Q Consensus 193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~ 225 (312)
..+++.|+|. .|+. .|.++..++++.
T Consensus 83 --~~~~~~Vv~~-~~~~----~Gvit~~dll~~ 108 (109)
T cd04606 83 --DLLALPVVDE-EGRL----VGIITVDDVIDV 108 (109)
T ss_pred --CCceeeeECC-CCcE----EEEEEhHHhhhh
Confidence 3466777874 3553 455666666653
No 222
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=13 Score=34.34 Aligned_cols=98 Identities=14% Similarity=0.226 Sum_probs=62.9
Q ss_pred CccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCC
Q 021440 116 PFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDS 195 (312)
Q Consensus 116 P~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~ 195 (312)
+-.|.+++.| +.. .+|.++++++..|+-+|..|+- |+ ..+..++ .|..|...+.+ +-...++.|.+..
T Consensus 3 v~~i~~~~~f---~~~---~~~~~~~~f~a~wa~~~~q~~~-v~--~~~~~~~-~~~~~~k~~a~--~~~eis~~~~v~~ 70 (227)
T KOG0911|consen 3 VQFIVFQEQF---LDQ---KGKLLVLHFWAIWAVVQKQMDQ-VF--DHLAEYF-KNAQFLKLEAE--EFPEISNLIAVEA 70 (227)
T ss_pred ceeehhHHHH---HHh---ccchhhhhhhhhhhhhhhhHHH-HH--HHHHHhh-hhheeeeehhh--hhhHHHHHHHHhc
Confidence 3345666666 333 8899999999999999999952 21 2233333 45555554333 2335677888999
Q ss_pred CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440 196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~ 228 (312)
-||+.++. .|+.+....|...+ .+...+..
T Consensus 71 vp~~~~~~--~~~~v~~l~~~~~~-~~~~~~~~ 100 (227)
T KOG0911|consen 71 VPYFVFFF--LGEKVDRLSGADPP-FLVSKVEK 100 (227)
T ss_pred Cceeeeee--cchhhhhhhccCcH-HHHHHHHH
Confidence 99999986 37777777775433 33333333
No 223
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=41.77 E-value=85 Score=23.31 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=34.0
Q ss_pred HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId 203 (312)
|+.+++ ++-+..++|..|... ++++.++ |...-++.+ .++..+...+....+|.|. |+
T Consensus 4 ~~~~~~--V~ly~~~~Cp~C~~a----------k~~L~~~gi~y~~idi~~~-~~~~~~~~~~g~~~vP~i~-i~ 64 (79)
T TIGR02190 4 ARKPES--VVVFTKPGCPFCAKA----------KATLKEKGYDFEEIPLGND-ARGRSLRAVTGATTVPQVF-IG 64 (79)
T ss_pred cCCCCC--EEEEECCCCHhHHHH----------HHHHHHcCCCcEEEECCCC-hHHHHHHHHHCCCCcCeEE-EC
Confidence 334444 333445789999887 3444443 444333322 4555666667778999996 45
No 224
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=41.73 E-value=1.9e+02 Score=23.57 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=49.8
Q ss_pred HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-----EEEEEeccCChhHHHHHHhcCC-CCCCeEEEEeCCCC
Q 021440 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-----FIFWQEYDDTSEGWKVCSFYNM-DSIPAVLVIDPITG 207 (312)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-----FIfwq~~~ds~EG~~~~~~Y~~-~~~P~i~IIdprTG 207 (312)
...|.++|+=|++.|+-+.+-- .++.++++++ +.++.+-...+---+++..|++ ..=|-+++|. .|
T Consensus 17 S~~~~~~iFKHSt~C~IS~~a~------~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~--~g 88 (105)
T PF11009_consen 17 SKEKPVLIFKHSTRCPISAMAL------REFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIK--NG 88 (105)
T ss_dssp ---SEEEEEEE-TT-HHHHHHH------HHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEE--TT
T ss_pred cccCcEEEEEeCCCChhhHHHH------HHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEE--CC
Confidence 3488999999999999887764 3566666532 4555444444555578888998 5689999998 48
Q ss_pred eeEEEe-cCCCChHHH
Q 021440 208 QKICSW-CGMINPQPL 222 (312)
Q Consensus 208 e~v~~~-~G~~~~~~f 222 (312)
+.++.- .+.|+++.+
T Consensus 89 ~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 89 KVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEEEGGG-SHHHH
T ss_pred EEEEECccccCCHHhc
Confidence 988652 234666553
No 225
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=41.70 E-value=24 Score=28.74 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=35.5
Q ss_pred eecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcC----CCCCCeEEE
Q 021440 143 LQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYN----MDSIPAVLV 201 (312)
Q Consensus 143 iq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~----~~~~P~i~I 201 (312)
+..++|..|+.+ +.+|.+ ++-++.++..|.+ ++|.++-..+. ..+.|.|.|
T Consensus 19 fSKs~C~~c~~~-k~ll~~------~~v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 19 FSKSSCPYCHRA-KELLSD------LGVNPKVVELDED-EDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred EECCcCchHHHH-HHHHHh------CCCCCEEEEccCC-CCcHHHHHHHHHhcCCCCCCEEEE
Confidence 344789999996 445554 6667888888776 77776655443 258999884
No 226
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=41.34 E-value=33 Score=32.84 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=32.5
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440 10 SRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (312)
Q Consensus 10 ~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~ 48 (312)
..+.-.+.+ ||++.++|.+.|+.++|++-.||-+....
T Consensus 237 ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 237 RAVRIVMEA-TGVSREEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHHHH-HCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 344557888 99999999999999999999999988654
No 227
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=40.11 E-value=1.3e+02 Score=22.56 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=51.2
Q ss_pred cccccHHHHHHHHHHcC-CeEEEEeecCCCc-------cc-chhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHh
Q 021440 120 MFNGSFEKAKDAALAQD-KWLLVNLQSTKEF-------SS-LMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSF 190 (312)
Q Consensus 120 ~~~gsf~~A~~~Ak~~~-KwLLVniq~~~~f-------~c-~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~ 190 (312)
-...+..+|++...+.+ .++.| +.+...+ ++ ..+....|.+..+.++++.+++....+..-.+..+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~v-~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~ 85 (112)
T cd04624 7 DPDTSIREAAKLMAEENVGSVVV-VDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRK 85 (112)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEE-ECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHHHHHHH
Confidence 34557888888776554 34444 3332221 11 112222345556888888888776554333444443332
Q ss_pred cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
...+.+.|++. .|.. .|.++..+++
T Consensus 86 ---~~~~~~~Vv~~-~g~~----~Gilt~~dl~ 110 (112)
T cd04624 86 ---NNIRHHLVVDK-GGEL----VGVISIRDLV 110 (112)
T ss_pred ---cCccEEEEEcC-CCcE----EEEEEHHHhc
Confidence 34578888885 4654 3555555544
No 228
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=39.94 E-value=9.1 Score=32.20 Aligned_cols=80 Identities=26% Similarity=0.348 Sum_probs=54.6
Q ss_pred hc-CCCccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHh
Q 021440 112 LY-RPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSF 190 (312)
Q Consensus 112 lf-rPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~ 190 (312)
.| .|+-.+...|+ .|-+++|+.+ -|..|||+- +-|.+|+.
T Consensus 16 R~kmP~~~v~~eG~-----------~KTvi~Nf~d----I~~~L~R~p---~~~~ky~~--------------------- 56 (125)
T PF01873_consen 16 RYKMPPPQVKIEGK-----------KKTVIVNFVD----ICKALNRDP---EHVLKYFG--------------------- 56 (125)
T ss_dssp S-CCCT--EEEETS-----------TEEEETTHHH----HHHHHTSSH---HHHHHHHH---------------------
T ss_pred ceecCCCeEEEEcc-----------ceeeeecHHH----HHHHHCCCH---HHHHHHHH---------------------
Confidence 44 46666777776 7999999987 599999863 44555543
Q ss_pred cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021440 191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK 236 (312)
Q Consensus 191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~~ 236 (312)
..+=+-.-||.. |..+ +.|..+++.+-+.|..|++.|=+-
T Consensus 57 ---~ELgt~~~id~~-~~li--i~G~~~~~~i~~~L~~fI~~yVlC 96 (125)
T PF01873_consen 57 ---KELGTQGSIDGK-GRLI--INGRFSSKQIQDLLDKFIKEYVLC 96 (125)
T ss_dssp ---HHSSSEEEEETT-TEEE--EESSSSCCHHHHHHHHHHCHHSSC
T ss_pred ---HHHCCceEECCC-CEEE--EEEecCHHHHHHHHHHHHHHEEEc
Confidence 223334556643 4544 679999999999999999998553
No 229
>PRK13669 hypothetical protein; Provisional
Probab=39.18 E-value=54 Score=25.45 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHHhhCCC
Q 021440 217 INPQPLGEMLLPFMDRSPR 235 (312)
Q Consensus 217 ~~~~~fl~~L~~fl~~~~~ 235 (312)
.+++++++.+.++|+++++
T Consensus 59 ~t~eeL~~kI~~~i~e~~~ 77 (78)
T PRK13669 59 ETPEELVENIYAHLEENPM 77 (78)
T ss_pred CCHHHHHHHHHHHHhhcCC
Confidence 5899999999999999764
No 230
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=38.28 E-value=16 Score=28.90 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=17.6
Q ss_pred ccchhhcccCCCHHHHHHhhcc
Q 021440 150 SSLMLNRDTWGNEAVSQIISVN 171 (312)
Q Consensus 150 ~c~~lnRDvw~~~~V~~~i~~n 171 (312)
.-+.+-+.|++||+|++||++|
T Consensus 20 ~~~~l~~~vl~dp~V~~Fl~~h 41 (94)
T PF07319_consen 20 RYEQLKQEVLSDPEVQAFLQEH 41 (94)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHS
T ss_pred HHHHHHHHHHcCHHHHHHHHHh
Confidence 3456778999999999999976
No 231
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=37.57 E-value=1.2e+02 Score=21.74 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=30.7
Q ss_pred eecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440 143 LQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 143 iq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId 203 (312)
+..++|..|... ++++++ .|..+.++.+. ++..+...+....+|.| +|+
T Consensus 6 ys~~~Cp~C~~a----------k~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~~~vP~i-fi~ 57 (72)
T cd03029 6 FTKPGCPFCARA----------KAALQENGISYEEIPLGKDI-TGRSLRAVTGAMTVPQV-FID 57 (72)
T ss_pred EECCCCHHHHHH----------HHHHHHcCCCcEEEECCCCh-hHHHHHHHhCCCCcCeE-EEC
Confidence 344689999877 444444 35555444333 45556666677899998 566
No 232
>PTZ00062 glutaredoxin; Provisional
Probab=37.43 E-value=1.5e+02 Score=26.94 Aligned_cols=81 Identities=7% Similarity=0.092 Sum_probs=44.1
Q ss_pred hhHHHhhhcCCCccccccccHHHHHHHHHHcCCeEEEEeec----CCCcccchhhcccCCCHHHHHHhhcc---EEEEEe
Q 021440 105 SHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQS----TKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQE 177 (312)
Q Consensus 105 ~~~~La~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~----~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~ 177 (312)
....+..++.++- .....+-+.. .-..+.|+|+..+ ++|..|+.+ +++++++ |..+-+
T Consensus 86 ~~~~~~~~~~~~~----~~~~~~~v~~-li~~~~Vvvf~Kg~~~~p~C~~C~~~----------k~~L~~~~i~y~~~DI 150 (204)
T PTZ00062 86 LVSFIRGWAQKGS----SEDTVEKIER-LIRNHKILLFMKGSKTFPFCRFSNAV----------VNMLNSSGVKYETYNI 150 (204)
T ss_pred HHHHHHHHcCCCC----HHHHHHHHHH-HHhcCCEEEEEccCCCCCCChhHHHH----------HHHHHHcCCCEEEEEc
Confidence 3455566665432 1123333333 3344677888775 578888766 5666653 444433
Q ss_pred ccCChhHHHHH-HhcCCCCCCeEEE
Q 021440 178 YDDTSEGWKVC-SFYNMDSIPAVLV 201 (312)
Q Consensus 178 ~~ds~EG~~~~-~~Y~~~~~P~i~I 201 (312)
.. ..+++... .+....++|.|.|
T Consensus 151 ~~-d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 151 FE-DPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred CC-CHHHHHHHHHHhCCCCCCeEEE
Confidence 32 34554443 4445578898883
No 233
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=37.25 E-value=1.1e+02 Score=23.95 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=53.3
Q ss_pred ccccHHHHHHHHHHcCCeEEEEeecCCCcc----cchhhc-----------ccCCCHHHHHHhhccEEEEEecc---CCh
Q 021440 121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFS----SLMLNR-----------DTWGNEAVSQIISVNFIFWQEYD---DTS 182 (312)
Q Consensus 121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~----c~~lnR-----------Dvw~~~~V~~~i~~nFIfwq~~~---ds~ 182 (312)
...+..+|++.-.+.+.+.++-+.+...+- -.-+.+ ..|.+..|.++++++++...... ...
T Consensus 8 ~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~ 87 (126)
T cd04640 8 ADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLEELENA 87 (126)
T ss_pred CCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHHHhccC
Confidence 345788888777666655555454433321 111211 24555668899988875543321 112
Q ss_pred hHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHH
Q 021440 183 EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGE 224 (312)
Q Consensus 183 EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~ 224 (312)
..........-..++++.|+|-..|.. .|.++..+++.
T Consensus 88 ~l~~~l~~m~~~~~~~lpVvd~~~~~~----~G~it~~di~~ 125 (126)
T cd04640 88 SVGDVVETLKASGRQHALVVDREHHQI----RGIISTSDIAR 125 (126)
T ss_pred cHHHHHHHHHHCCCceEEEEECCCCEE----EEEEeHHHHhh
Confidence 222233333345678888998521342 36677666653
No 234
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=37.09 E-value=43 Score=32.03 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=32.3
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440 10 SRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (312)
Q Consensus 10 ~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~ 48 (312)
..+.-.+.+ ||++.++|++.|+.++|++-.||-+....
T Consensus 232 Ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 232 RAVRIVRQA-TDCNKELAEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHHHH-hCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 345557788 89999999999999999999999987653
No 235
>smart00250 PLEC Plectin repeat.
Probab=37.07 E-value=15 Score=24.08 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=13.9
Q ss_pred CCeEEEEeCCCCeeEEE
Q 021440 196 IPAVLVIDPITGQKICS 212 (312)
Q Consensus 196 ~P~i~IIdprTGe~v~~ 212 (312)
...-.||||.||+++.+
T Consensus 8 ~~~~Giidp~t~~~lsv 24 (38)
T smart00250 8 SAIGGIIDPETGQKLSV 24 (38)
T ss_pred hheeEEEcCCCCCCcCH
Confidence 45678999999998855
No 236
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=35.05 E-value=90 Score=25.16 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=28.2
Q ss_pred HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc----cEEEEEec
Q 021440 134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEY 178 (312)
Q Consensus 134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~----nFIfwq~~ 178 (312)
.+.|..++.+.+..|..|..+. +.+++++.+ ++++..+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~------~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLA------PELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhh------HHHHHHHHHCCCceEEEEeCC
Confidence 3568889999999999999995 556665543 46655443
No 237
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=34.49 E-value=1.9e+02 Score=21.44 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=50.9
Q ss_pred CccccccccHHHHHHHHHHcCC-eEEEEeecCCCcccchh-hcccC----CCHHHHHHhhccEEEEEe-ccCChhHHHHH
Q 021440 116 PFHVMFNGSFEKAKDAALAQDK-WLLVNLQSTKEFSSLML-NRDTW----GNEAVSQIISVNFIFWQE-YDDTSEGWKVC 188 (312)
Q Consensus 116 P~~l~~~gsf~~A~~~Ak~~~K-wLLVniq~~~~f~c~~l-nRDvw----~~~~V~~~i~~nFIfwq~-~~ds~EG~~~~ 188 (312)
+..+-...+..+|.....+.+. +++|- .....+ .-.+ -++++ .+..+.++++..+++... +..-.+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~~~~-~G~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVV-DDDGKL-VGIVTNRDLRFETDLDKPVSEVMTPENLLTTVEGTSLEEALELL 81 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEE-cCCCEE-EEEEEhhHeeecccCCCCHHHhcccCceEEecCCCCHHHHHHHH
Confidence 3334445678888887765553 44332 221121 1111 11211 134677888877777655 33335555555
Q ss_pred HhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 189 SFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 189 ~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
..++ ++.+.|+|. .|+.+ |.++..+++
T Consensus 82 ~~~~---~~~~~Vv~~-~~~~~----Gvi~~~dil 108 (110)
T cd04601 82 HEHK---IEKLPVVDD-EGKLK----GLITVKDIE 108 (110)
T ss_pred HHhC---CCeeeEEcC-CCCEE----EEEEhhhhh
Confidence 5543 667778884 46544 445555544
No 238
>PHA03050 glutaredoxin; Provisional
Probab=34.36 E-value=1.1e+02 Score=24.65 Aligned_cols=55 Identities=5% Similarity=-0.091 Sum_probs=31.6
Q ss_pred CeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc------EEEEEeccC--ChhHH-HHHHhcCCCCCCeEEEEe
Q 021440 137 KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN------FIFWQEYDD--TSEGW-KVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 137 KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n------FIfwq~~~d--s~EG~-~~~~~Y~~~~~P~i~IId 203 (312)
+-|.||- .+||+.|.+. +++++++ |-.+.++.. ..+.+ .+.+...-.+.|.| +|+
T Consensus 13 ~~V~vys-~~~CPyC~~a----------k~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I-fI~ 76 (108)
T PHA03050 13 NKVTIFV-KFTCPFCRNA----------LDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI-FFG 76 (108)
T ss_pred CCEEEEE-CCCChHHHHH----------HHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE-EEC
Confidence 3355554 4589999877 4566653 444444431 22323 34455566789999 455
No 239
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=33.24 E-value=1.4e+02 Score=26.90 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=29.4
Q ss_pred CCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440 195 SIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 195 ~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
.-..+.+|||+ |+.+..+.+.-.|+++++.|+..+..
T Consensus 170 Hs~~~~lid~~-G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 170 HSAGFYLIDAD-GRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred eeeEEEEECCC-CeEEEEecCCCChHHHHHHHHHHhhc
Confidence 34678889984 99888877666699999999988754
No 240
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=33.14 E-value=71 Score=21.57 Aligned_cols=26 Identities=19% Similarity=-0.004 Sum_probs=21.3
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHH
Q 021440 20 VGASGVTAIECLQATSWKLDEAILLF 45 (312)
Q Consensus 20 t~~~~~~A~~~Le~~~wdLe~Av~lf 45 (312)
-....++=...|+.|+||+=.||..+
T Consensus 13 P~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 13 PHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred CCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 34556677789999999999999876
No 241
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=33.00 E-value=52 Score=21.16 Aligned_cols=17 Identities=18% Similarity=0.342 Sum_probs=14.4
Q ss_pred eEEEEeCCCCeeEEEec
Q 021440 198 AVLVIDPITGQKICSWC 214 (312)
Q Consensus 198 ~i~IIdprTGe~v~~~~ 214 (312)
+|.-||.+||+.++.+.
T Consensus 11 ~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 11 YLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEEETTTTSEEEEEE
T ss_pred EEEEEECCCCCEEEeee
Confidence 68889999999998753
No 242
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=32.56 E-value=53 Score=31.45 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.3
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440 10 SRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV 48 (312)
Q Consensus 10 ~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~ 48 (312)
..+.-.+.+ ||+|.+.|...|+.++|++-.||-+....
T Consensus 233 Ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~ai~~~~~~ 270 (296)
T PRK12570 233 RAVRIVMQA-TGCSEDEAKELLKESDNDVKLAILMILTG 270 (296)
T ss_pred HHHHHHHHH-HCcCHHHHHHHHHHhCCccHHHHHHHHhC
Confidence 345557788 89999999999999999999999987653
No 243
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=32.08 E-value=77 Score=25.24 Aligned_cols=30 Identities=30% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440 196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPF 229 (312)
Q Consensus 196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~f 229 (312)
-..|-|||..||+.+..+ .|+++|+.....
T Consensus 67 ~~vVkViD~~T~eVIRqI----P~Ee~l~l~~~l 96 (107)
T PF03646_consen 67 RVVVKVIDKETGEVIRQI----PPEELLDLAKRL 96 (107)
T ss_dssp EEEEEEEETTT-SEEEEE-----HHHHHHHHHHH
T ss_pred cEEEEEEECCCCcEEEeC----CcHHHHHHHHHH
Confidence 367889999999999885 578777665443
No 244
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=31.58 E-value=2.3e+02 Score=28.46 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccC---C---hhHHHHHHhcCCCC
Q 021440 125 FEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDD---T---SEGWKVCSFYNMDS 195 (312)
Q Consensus 125 f~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~d---s---~EG~~~~~~Y~~~~ 195 (312)
.-+++++||.++|...|=+...+ +-+.|+++|+.+ ||-.|++.- . .+|.+++......
T Consensus 132 ~~df~~kak~eGkIr~~GFSfHg------------s~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~g- 198 (391)
T COG1453 132 VFDFLEKAKAEGKIRNAGFSFHG------------STEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLG- 198 (391)
T ss_pred hHHHHHHHHhcCcEEEeeecCCC------------CHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCc-
Confidence 56889999999987777665432 455667777764 444444322 1 4888999888764
Q ss_pred CCeEEEEeCCC-CeeE
Q 021440 196 IPAVLVIDPIT-GQKI 210 (312)
Q Consensus 196 ~P~i~IIdprT-Ge~v 210 (312)
|.|+.|.. |.++
T Consensus 199 ---I~IMeP~~gG~l~ 211 (391)
T COG1453 199 ---IFIMEPLDGGGLL 211 (391)
T ss_pred ---EEEEeeCCCCCcc
Confidence 66777754 4443
No 245
>PRK10638 glutaredoxin 3; Provisional
Probab=31.49 E-value=1.5e+02 Score=22.06 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=27.5
Q ss_pred ecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID 203 (312)
Q Consensus 144 q~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId 203 (312)
..++|..|+.. +++++++ |...-++.+...-..+.+......+|.| +++
T Consensus 8 ~~~~Cp~C~~a----------~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i-~~~ 59 (83)
T PRK10638 8 TKATCPFCHRA----------KALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQI-FID 59 (83)
T ss_pred ECCCChhHHHH----------HHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEE-EEC
Confidence 35689988876 4555544 4443332222122345566666889988 445
No 246
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=30.28 E-value=88 Score=24.21 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=22.6
Q ss_pred EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021440 199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR 235 (312)
Q Consensus 199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~ 235 (312)
+|+|| |+.+. ..+++++++.+.++++++++
T Consensus 48 FAlVn---G~~V~----A~t~eeL~~kI~~~i~e~~~ 77 (78)
T PF07293_consen 48 FALVN---GEIVA----AETAEELLEKIKEKIEENPM 77 (78)
T ss_pred cEEEC---CEEEe----cCCHHHHHHHHHHHHhcccC
Confidence 45555 66542 36899999999999998874
No 247
>PRK10824 glutaredoxin-4; Provisional
Probab=30.11 E-value=2.9e+02 Score=22.76 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCeEEEEeec----CCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHH-HHHhcCCCCCCeEEE
Q 021440 127 KAKDAALAQDKWLLVNLQS----TKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWK-VCSFYNMDSIPAVLV 201 (312)
Q Consensus 127 ~A~~~Ak~~~KwLLVniq~----~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~-~~~~Y~~~~~P~i~I 201 (312)
+.++..-++ .-|+|+..+ ++|+.|+...+ +.+-++-.|-.+-++.+ ++-+. +.+.-...++|-|.|
T Consensus 6 ~~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~-------lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 6 EKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQ-------ALSACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHHhc-CCEEEEECCCCCCCCCchHHHHHH-------HHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE
Confidence 344444444 456666766 68999988743 11112223444444333 33333 333445578999884
No 248
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=30.03 E-value=1.8e+02 Score=21.83 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=53.0
Q ss_pred CCccccccccHHHHHHHHHHcCCeEEEEeecCCCc----ccc-----hhhcccCCCHHHHHHhhccEEEEEeccCChhHH
Q 021440 115 PPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEF----SSL-----MLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW 185 (312)
Q Consensus 115 PP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f----~c~-----~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~ 185 (312)
+|..+--.-+..+|++.-.+.+...++-+.+...+ .-. .+.+..|.+..+.+++..++++...+..-.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 34444445567888776665543333323222232 111 123344555678888888877765433333333
Q ss_pred HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 186 KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
+.. .-...+.+.|+|. .|+. .|.++..+++
T Consensus 82 ~~~---~~~~~~~~~Vvd~-~g~~----~Gvvt~~dl~ 111 (113)
T cd04615 82 WLM---SNNNISRLPVLDD-KGKV----GGIVTEDDIL 111 (113)
T ss_pred HHH---HHcCCCeeeEECC-CCeE----EEEEEHHHhh
Confidence 333 3345577888884 4653 4555555554
No 249
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=29.91 E-value=43 Score=28.51 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=51.9
Q ss_pred hc-CCCccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHh
Q 021440 112 LY-RPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSF 190 (312)
Q Consensus 112 lf-rPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~ 190 (312)
.| .||-.++..|. |-+++|+.+ -|..|||+- +.|.+|+-..+
T Consensus 22 R~~mP~~~v~~eG~------------kTvi~Nf~~----Ia~~L~R~~---~~v~ky~~~EL------------------ 64 (133)
T TIGR00311 22 RFEVPKAYIVIEGN------------RTIIQNFRE----VAKALNRDE---QHLLKYLLKEL------------------ 64 (133)
T ss_pred cccCCCceEEEEcC------------cEEEecHHH----HHHHHCCCH---HHHHHHHHHHh------------------
Confidence 34 35566666663 899999987 599999963 55555554221
Q ss_pred cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021440 191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK 236 (312)
Q Consensus 191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~~ 236 (312)
=+-.-|| +|..+ +.|..++..+-+.|..|+++|=+-
T Consensus 65 ------gt~g~i~--~~rli--i~G~~~~~~i~~~L~~yI~~yVlC 100 (133)
T TIGR00311 65 ------GTAGNLE--GGRLI--LQGKFTHFLLNERIEDYVRKYVIC 100 (133)
T ss_pred ------CCCceec--CCEEE--EEeecCHHHHHHHHHHHHhheEEC
Confidence 1111134 35433 679999999999999999998553
No 250
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=29.84 E-value=46 Score=27.35 Aligned_cols=66 Identities=23% Similarity=0.295 Sum_probs=46.0
Q ss_pred CeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCC
Q 021440 137 KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGM 216 (312)
Q Consensus 137 KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~ 216 (312)
|-+++|+.+ -|..|||+ .+.|.+|+-.. +=+-.-||.. |..+ +.|.
T Consensus 18 kTvi~Nf~~----I~~~L~R~---p~hv~kyl~~E------------------------Lgt~g~id~~-~rli--i~G~ 63 (110)
T smart00653 18 KTVIVNFAD----IAKALNRP---PDHVLKFLLAE------------------------LGTQGSIDGK-GRLI--VNGR 63 (110)
T ss_pred eEEEEcHHH----HHHHHCCC---HHHHHHHHHHH------------------------hCCceeECCC-CeEE--EEEe
Confidence 889999988 59999996 35555555422 1222334432 4433 6788
Q ss_pred CChHHHHHHHHHHHhhCCCC
Q 021440 217 INPQPLGEMLLPFMDRSPRK 236 (312)
Q Consensus 217 ~~~~~fl~~L~~fl~~~~~~ 236 (312)
.++..+-+.|..|+++|=+-
T Consensus 64 ~~~~~i~~~l~~yI~~yVlC 83 (110)
T smart00653 64 FTPKKLQDLLRRYIKEYVLC 83 (110)
T ss_pred eCHHHHHHHHHHHHHhcEEC
Confidence 99999999999999998553
No 251
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=29.43 E-value=1.7e+02 Score=21.85 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=52.0
Q ss_pred ccccHHHHHHHHHHcC-CeEEEEeecCCCc----ccchhhc-----ccCCCHHHHHHhhccEEEEEeccCChhHHHHHHh
Q 021440 121 FNGSFEKAKDAALAQD-KWLLVNLQSTKEF----SSLMLNR-----DTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSF 190 (312)
Q Consensus 121 ~~gsf~~A~~~Ak~~~-KwLLVniq~~~~f----~c~~lnR-----Dvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~ 190 (312)
..-++.+|++...+.+ ++++|.=. ..+ ....+.+ +...+..+.++++.++++...+..-.+..+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~ 85 (111)
T cd04800 8 PDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEALLLMLE 85 (111)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHHHHHHH
Confidence 3456888887765544 56655322 222 1112111 1112345888888898888765555566666655
Q ss_pred cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
++ .+++.|++. |+. .|.++..+++
T Consensus 86 ~~---~~~~~Vv~~--~~~----~Giit~~di~ 109 (111)
T cd04800 86 RG---IHHLPVVDD--GRL----VGVISATDLL 109 (111)
T ss_pred cC---CCeeeEeEC--CEE----EEEEEHHHhh
Confidence 54 566777774 553 4656666554
No 252
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=29.15 E-value=1.6e+02 Score=22.19 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=35.6
Q ss_pred CHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 161 NEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 161 ~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
+..|.++++.++++...+..-.+..+....++... +.|++. |+. -|.++..+++
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~---~~Vv~~--~~~----~Gvit~~di~ 112 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKR---YPVVDD--GKL----VGQISRRDVL 112 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCc---cCEEEC--CEE----EEEEEHHHHh
Confidence 45688888888887766555577777777776654 556773 543 4556666554
No 253
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=29.02 E-value=82 Score=31.98 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=41.3
Q ss_pred hhhcCCCccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh
Q 021440 110 ASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS 169 (312)
Q Consensus 110 a~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~ 169 (312)
++.|+|-.+|+---++++|++.=.++.|+|..|+-+. +...|+++++
T Consensus 334 eEIFGPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~-------------n~~~vkr~l~ 380 (477)
T KOG2456|consen 334 EEIFGPILPIITVQSLDEAINFINEREKPLALYIFSN-------------NEKLVKRFLT 380 (477)
T ss_pred hhhccCccceeEhhhHHHHHHHHhcCCCceEEEEecC-------------CHHHHHHHHH
Confidence 5789999999999999999999999999999999886 4456677776
No 254
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=28.94 E-value=1.4e+02 Score=28.49 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=52.3
Q ss_pred cCCeEEEEeecCCCcc-cc-hhhcccCCCHHHHHHhhccE------EEEEecc--CCh----------------------
Q 021440 135 QDKWLLVNLQSTKEFS-SL-MLNRDTWGNEAVSQIISVNF------IFWQEYD--DTS---------------------- 182 (312)
Q Consensus 135 ~~KwLLVniq~~~~f~-c~-~lnRDvw~~~~V~~~i~~nF------Ifwq~~~--ds~---------------------- 182 (312)
.+||+|+|+-=+.|++ |. .|. +--.|++.|+++- ||.-+|= |++
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELe----Km~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~e 213 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELE----KMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTE 213 (280)
T ss_pred ccceEEEEecccCCCCcChHHHH----HHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHH
Confidence 5699999998876652 21 111 1123444444331 4444442 222
Q ss_pred hHHHHHHhcCC--C--------CC-----CeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440 183 EGWKVCSFYNM--D--------SI-----PAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 183 EG~~~~~~Y~~--~--------~~-----P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
+-.++|+.|+| . +| =.+-+||| .|+.+..+----+++++.+.+.+-+..+
T Consensus 214 qvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidP-eg~Fvd~~GrN~~~~~~~~~I~~~v~~y 278 (280)
T KOG2792|consen 214 QVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDP-EGEFVDYYGRNYDADELADSILKHVASY 278 (280)
T ss_pred HHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECC-CcceehhhcccCCHHHHHHHHHHHHHhc
Confidence 33467788886 1 11 23456788 4776655433358888888877665543
No 255
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=28.85 E-value=1.5e+02 Score=28.24 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=64.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I 201 (312)
..|.+..+.-++...-+.+-+.++.|..+.. ..++++++.++ .+++.-....|.+..++.+.-+-..-|++.|
T Consensus 168 ~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~------RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~I 241 (281)
T PF02401_consen 168 EKFEEIVEALKKRFPELEGPVFNTICYATQN------RQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHI 241 (281)
T ss_dssp HHHHHHHHHHHHHSTCEE-SCC-S--CHHHH------HHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHhCccccCCCCCCCCHhHHH------HHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEe
Confidence 3466777777777777666566666654432 24678888776 4788888899999888765433323366666
Q ss_pred EeCC--------CCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440 202 IDPI--------TGQKICSWCGMINPQPLGEMLLPFMDR 232 (312)
Q Consensus 202 Idpr--------TGe~v~~~~G~~~~~~fl~~L~~fl~~ 232 (312)
=++. ..+.+..-.|..+|+.+++.+..+|++
T Consensus 242 e~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 242 ETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp SSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred CCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 4431 123566678899999999999999875
No 256
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=27.77 E-value=2.8e+02 Score=22.66 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCC-CCeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440 184 GWKVCSFYNMDS-IPAVLVIDPITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 184 G~~~~~~Y~~~~-~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L 226 (312)
...+.+.|++.. .-.+++|+. .|..-..|...++++++...+
T Consensus 66 ~~~lr~~l~~~~~~f~~vLiGK-DG~vK~r~~~p~~~~~lf~~I 108 (118)
T PF13778_consen 66 IQALRKRLRIPPGGFTVVLIGK-DGGVKLRWPEPIDPEELFDTI 108 (118)
T ss_pred HHHHHHHhCCCCCceEEEEEeC-CCcEEEecCCCCCHHHHHHHH
Confidence 347888999754 345555664 566544578888888755544
No 257
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=26.63 E-value=74 Score=34.14 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=36.6
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440 8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE 50 (312)
Q Consensus 8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~ 50 (312)
..+.|...+++ |-+..+|++-|.+.|+|+|.|++=+|.+.+
T Consensus 635 ~e~~v~si~sm--Gf~~~qa~~aL~~~n~nveravDWif~h~d 675 (763)
T KOG0944|consen 635 DEESVASIVSM--GFSRNQAIKALKATNNNVERAVDWIFSHMD 675 (763)
T ss_pred ChhHheeeeee--cCcHHHHHHHHHhcCccHHHHHHHHHhccc
Confidence 45677788888 999999999999999999999999999865
No 258
>PRK08452 flagellar protein FlaG; Provisional
Probab=26.20 E-value=1.2e+02 Score=25.54 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=25.5
Q ss_pred CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440 196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
-++|-|+|..||+.++. +.|+++++.+..+-+
T Consensus 83 ~~vVkVvD~~T~eVIRq----IP~Ee~L~l~~~m~e 114 (124)
T PRK08452 83 GLVVSVKEANGGKVIRE----IPSKEAIELMEYMRD 114 (124)
T ss_pred cEEEEEEECCCCceeee----CCCHHHHHHHHHHHH
Confidence 47899999999999987 568888877666543
No 259
>PRK07738 flagellar protein FlaG; Provisional
Probab=25.75 E-value=1.3e+02 Score=25.13 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=26.1
Q ss_pred CCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440 195 SIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD 231 (312)
Q Consensus 195 ~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~ 231 (312)
.-+.|=|||..||+.++. +.|+++++.+...-+
T Consensus 75 ~~~vVkVvD~~T~EVIRQ----IPpEe~L~l~~~m~e 107 (117)
T PRK07738 75 NEYYVQVVDERTNEVIRE----IPPKKLLDMYAAMME 107 (117)
T ss_pred CcEEEEEEECCCCeeeee----CCCHHHHHHHHHHHH
Confidence 357889999999999988 568888877766544
No 260
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=25.65 E-value=1.8e+02 Score=20.98 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=33.9
Q ss_pred ecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCC-hhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHH
Q 021440 144 QSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDT-SEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQP 221 (312)
Q Consensus 144 q~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds-~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~ 221 (312)
..++|..|+.. ++++.++ .=|-.++++. ++.............|.|. ++ |.. .|.| .+|+.
T Consensus 5 ~~~~Cp~C~~a----------k~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~-~~---g~~--~~~G-~~~~~ 67 (72)
T TIGR02194 5 SKNNCVQCKMT----------KKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIV-AD---GDL--SWSG-FRPDK 67 (72)
T ss_pred eCCCCHHHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEE-EC---CCc--EEec-cCHHH
Confidence 34578888876 4555553 2233334442 3344433334667899974 44 332 3666 45665
Q ss_pred HH
Q 021440 222 LG 223 (312)
Q Consensus 222 fl 223 (312)
+.
T Consensus 68 ~~ 69 (72)
T TIGR02194 68 LK 69 (72)
T ss_pred HH
Confidence 53
No 261
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=1.1e+02 Score=29.90 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=39.1
Q ss_pred ccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEE--ec-CCCChHHHHHHHHHHHhhCC
Q 021440 178 YDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS--WC-GMINPQPLGEMLLPFMDRSP 234 (312)
Q Consensus 178 ~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~--~~-G~~~~~~fl~~L~~fl~~~~ 234 (312)
-+|..|+.++-+..++++.||+.+..|.+|...+. +. +....+ .|.+-+|++...
T Consensus 109 ~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~--Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 109 MVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFE--AEQIAQFVADRT 166 (331)
T ss_pred EEeccccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchh--HHHHHHHHHHhh
Confidence 46777899999999999999999999988876522 11 122333 666777776543
No 262
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=24.66 E-value=2.1e+02 Score=24.24 Aligned_cols=58 Identities=10% Similarity=0.220 Sum_probs=34.8
Q ss_pred cEEEEEecc---CChhHHHHHHhcCC--CCCCeEEEEeCCCCeeEEEe--cCCCChHHHHHHHHHHHhhC
Q 021440 171 NFIFWQEYD---DTSEGWKVCSFYNM--DSIPAVLVIDPITGQKICSW--CGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 171 nFIfwq~~~---ds~EG~~~~~~Y~~--~~~P~i~IIdprTGe~v~~~--~G~~~~~~fl~~L~~fl~~~ 233 (312)
+.++-.+.+ ...+...++.+|++ ..||.|.+.- -..+.-..+ .|.++.+ .|+.|+..+
T Consensus 54 dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~-~~~~~pv~~p~~~~~t~~----~l~~fvk~~ 118 (126)
T PF07912_consen 54 DLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFV-GDKEEPVRYPFDGDVTAD----NLQRFVKSN 118 (126)
T ss_dssp SEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEE-SSTTSEEEE-TCS-S-HH----HHHHHHHHT
T ss_pred ceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEec-CCCCCCccCCccCCccHH----HHHHHHHhC
Confidence 355555533 34577899999999 6799998887 233444445 6666654 577788766
No 263
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=24.19 E-value=96 Score=23.75 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440 24 GVTAIECLQATSWKLDEAILLFFAV 48 (312)
Q Consensus 24 ~~~A~~~Le~~~wdLe~Av~lff~~ 48 (312)
-+.|...|+..|-++..||.+||..
T Consensus 13 K~~a~~il~~~Glt~s~ai~~fl~q 37 (83)
T PF04221_consen 13 KEEAEAILEELGLTLSDAINMFLKQ 37 (83)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4689999999999999999999985
No 264
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=24.17 E-value=3e+02 Score=20.31 Aligned_cols=92 Identities=11% Similarity=0.059 Sum_probs=45.6
Q ss_pred cccHHHHHHHHHHcC-CeEEEEeecCCCcccchhh-cccCC--CHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440 122 NGSFEKAKDAALAQD-KWLLVNLQSTKEFSSLMLN-RDTWG--NEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIP 197 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~-KwLLVniq~~~~f~c~~ln-RDvw~--~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P 197 (312)
..+..+|+...++.+ +++.|- .....+ .-.+. +|+.. ...+.+++..++++...+..-.+..+... -..++
T Consensus 9 ~~~~~~a~~~~~~~~~~~~~v~-d~~g~~-~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 83 (106)
T cd04582 9 DDPLSDALGLMDDSDLRALTVV-DADGQP-LGFVTRREAARASGGCCGDHAEPFKVTVSVDDDLRIVLSRMF---AHDMS 83 (106)
T ss_pred CCcHHHHHHHHHhcCCCEEEEE-CCCCCE-EEEEeHHHHHHhcccchhhhcccCCEEECCCCCHHHHHHHHH---HCCCC
Confidence 456888887766554 344433 222222 11111 11111 12377777777655433222234444333 35678
Q ss_pred eEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 198 AVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 198 ~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
.+.|+|. .|+.+ |.++..+++
T Consensus 84 ~~~Vv~~-~~~~~----Gvi~~~~l~ 104 (106)
T cd04582 84 WLPCVDE-DGRYV----GEVTQRSIA 104 (106)
T ss_pred eeeEECC-CCcEE----EEEEHHHhh
Confidence 8889985 45544 445555543
No 265
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=23.81 E-value=71 Score=27.34 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=50.6
Q ss_pred CCccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCC
Q 021440 115 PPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMD 194 (312)
Q Consensus 115 PP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~ 194 (312)
|+-.+...|. |-+++|+.+ -|..|||+- +.|.+|+-..+
T Consensus 31 p~~~v~~eG~------------kTvi~Nf~~----I~~~L~R~~---~hv~ky~~~EL---------------------- 69 (138)
T PRK03988 31 PKPDVRIEGN------------RTIIRNFKE----IADRLNRDP---KHVAKFLLKEL---------------------- 69 (138)
T ss_pred CCCeEEEEcC------------cEEEecHHH----HHHHHCCCH---HHHHHHHHHHh----------------------
Confidence 6666666663 789999887 599999863 55555554221
Q ss_pred CCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021440 195 SIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK 236 (312)
Q Consensus 195 ~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~~ 236 (312)
=+-.-|+ +|..+ +.|..++..+-+.|..|+++|=+.
T Consensus 70 --gt~g~i~--~~~li--i~G~~~~~~i~~~L~~yI~~yVlC 105 (138)
T PRK03988 70 --GTAGNIE--GGRLI--LQGKFSPRVINEKIDRYVKEYVIC 105 (138)
T ss_pred --CCceeec--CCEEE--EEEeeCHHHHHHHHHHHHHhcEEC
Confidence 1111123 34444 678899999999999999998543
No 266
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=23.73 E-value=4.3e+02 Score=21.96 Aligned_cols=62 Identities=15% Similarity=0.351 Sum_probs=41.1
Q ss_pred HHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCC-CChHHHHHHHHHHHhhCCC
Q 021440 163 AVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGM-INPQPLGEMLLPFMDRSPR 235 (312)
Q Consensus 163 ~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~-~~~~~fl~~L~~fl~~~~~ 235 (312)
.+.+-++.++.|+.+. ...++..|++.. |.|++.-+. ++....+.|. ++.++ |..|+..+.+
T Consensus 14 ~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~-~~~~~~y~~~~~~~~~----l~~fI~~~~~ 76 (184)
T PF13848_consen 14 EAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKF-DEKPVVYDGDKFTPEE----LKKFIKKNSF 76 (184)
T ss_dssp HHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECT-TTSEEEESSSTTSHHH----HHHHHHHHSS
T ss_pred HHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccC-CCCceecccccCCHHH----HHHHHHHhcc
Confidence 3455566667777663 233777788887 999999863 4455667886 56665 6677766544
No 267
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=22.80 E-value=1.9e+02 Score=23.60 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440 184 GWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP 228 (312)
Q Consensus 184 G~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~ 228 (312)
..+.+..+++...|+|.| .|+.+ .|..+.++|.+.|.+
T Consensus 125 ~~~~~~~~~i~~tPt~~i----nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFI----NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHHT-SSSSEEEE----TTCEE---ETTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCccccEEEE----CCEEe---CCCCCHHHHHHHHcC
Confidence 345678889999999998 47764 677888888777653
No 268
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.48 E-value=7.5e+02 Score=25.51 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=33.9
Q ss_pred hHHHHHHhcCCCCCCeEEEEeCCCCeeE-EEecCCCChHHHHHHHHHHHhhC
Q 021440 183 EGWKVCSFYNMDSIPAVLVIDPITGQKI-CSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 183 EG~~~~~~Y~~~~~P~i~IIdprTGe~v-~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
+-.+.+..|.++..|.+.|++. .|+.. .+|.|...-.+|-.-|...+.-.
T Consensus 407 ~~~~~~~~~~v~~~P~~~i~~~-~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 407 EEPESETLPKITKLPTVALLDD-DGNYTGLKFHGVPSGHELNSFILALYNAA 457 (555)
T ss_pred cchhhHhhcCCCcCCEEEEEeC-CCcccceEEEecCccHhHHHHHHHHHHhc
Confidence 3456777899999999999973 34433 34778776666666666665544
No 269
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=21.36 E-value=3.9e+02 Score=25.78 Aligned_cols=106 Identities=11% Similarity=0.059 Sum_probs=64.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440 122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVL 200 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~ 200 (312)
...|.+..+..++...=+-|...++.|..++. ..+++.++.++ ..++.-....|.+..++.+.-+-..-|++.
T Consensus 168 ~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~------RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~ 241 (298)
T PRK01045 168 VDDTAEIIAALKERFPEIQGPPKDDICYATQN------RQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYL 241 (298)
T ss_pred HHHHHHHHHHHHHhCcCcccCCCCCcchhhHH------HHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEE
Confidence 34466666666654433333224444432221 34678888875 478888888898888766533322234444
Q ss_pred EEeC--------CCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440 201 VIDP--------ITGQKICSWCGMINPQPLGEMLLPFMDRS 233 (312)
Q Consensus 201 IIdp--------rTGe~v~~~~G~~~~~~fl~~L~~fl~~~ 233 (312)
|=++ ..-+.+..-.|..+|+.+++.+..+|...
T Consensus 242 Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~~ 282 (298)
T PRK01045 242 IDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKEL 282 (298)
T ss_pred ECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 4322 11234556678899999999999999876
No 270
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.22 E-value=2.8e+02 Score=20.73 Aligned_cols=92 Identities=10% Similarity=0.138 Sum_probs=51.3
Q ss_pred cccHHHHHHHHHHcCC-eEEEEeecCCCcccchhh-ccc---CCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCC
Q 021440 122 NGSFEKAKDAALAQDK-WLLVNLQSTKEFSSLMLN-RDT---WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSI 196 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~~K-wLLVniq~~~~f~c~~ln-RDv---w~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~ 196 (312)
..+..+|+....+.+. +++| +.....+ +-.+. +++ -.+..+.+++..++++...+..-.+..+....++..
T Consensus 10 ~~~~~~a~~~~~~~~~~~~~V-~d~~~~~-~G~v~~~~l~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~-- 85 (108)
T cd04596 10 TDTVKDWHELNKETGHSRFPV-VDEKNKV-VGIVTSKDVAGKDPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIE-- 85 (108)
T ss_pred CCCHHHHHHHHHHcCCCceeE-ECCCCeE-EEEecHHHHhcccccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCC--
Confidence 4567888877766654 3333 3222221 11111 111 124568899988888877666666676666666654
Q ss_pred CeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440 197 PAVLVIDPITGQKICSWCGMINPQPLG 223 (312)
Q Consensus 197 P~i~IIdprTGe~v~~~~G~~~~~~fl 223 (312)
.+.|+|. .|+. -|.++..+++
T Consensus 86 -~~~Vv~~-~~~~----~G~it~~di~ 106 (108)
T cd04596 86 -MLPVVDD-NKKL----LGIISRQDVL 106 (108)
T ss_pred -eeeEEcC-CCCE----EEEEEHHHhh
Confidence 4556774 4653 3555555544
No 271
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.09 E-value=2.7e+02 Score=20.71 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=50.2
Q ss_pred cCCCccccccccHHHHHHHHHHcC-CeEEEEeecCCCcccchhh-ccc-----CCCHHHHHHhhccEEEEEeccCChhHH
Q 021440 113 YRPPFHVMFNGSFEKAKDAALAQD-KWLLVNLQSTKEFSSLMLN-RDT-----WGNEAVSQIISVNFIFWQEYDDTSEGW 185 (312)
Q Consensus 113 frPP~~l~~~gsf~~A~~~Ak~~~-KwLLVniq~~~~f~c~~ln-RDv-----w~~~~V~~~i~~nFIfwq~~~ds~EG~ 185 (312)
|+++..+-..-+..+|++..++.+ .+++|- .+...+ +-.+. +++ .....+.+++..+++....+..-.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~~~~-~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 78 (110)
T cd04605 1 SRPVVTISEDASIKEAAKLMIEENINHLPVV-DEDGRL-VGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAA 78 (110)
T ss_pred CCCCEEECCCCCHHHHHHHHHhCCCceEEEE-CCCCcE-EEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHH
Confidence 345555556678999998876655 344432 222222 11111 010 011237777777776655443334455
Q ss_pred HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHH
Q 021440 186 KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPL 222 (312)
Q Consensus 186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~f 222 (312)
++.... ....+.|++. .|+.+ |.++..++
T Consensus 79 ~~~~~~---~~~~~~Vv~~-~~~~~----G~v~~~di 107 (110)
T cd04605 79 RKMERH---NISALPVVDA-ENRVI----GIITSEDI 107 (110)
T ss_pred HHHHHh---CCCEEeEECC-CCcEE----EEEEHHHh
Confidence 544433 3456667774 35543 44555444
No 272
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=21.02 E-value=3.8e+02 Score=26.98 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=60.9
Q ss_pred cccHHHHHHHHHHc----CCeEEEEeecC-CCcccchhhccc---CCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCC
Q 021440 122 NGSFEKAKDAALAQ----DKWLLVNLQST-KEFSSLMLNRDT---WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNM 193 (312)
Q Consensus 122 ~gsf~~A~~~Ak~~----~KwLLVniq~~-~~f~c~~lnRDv---w~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~ 193 (312)
.-+..+|++.-++. ...--+++.+. ..+---.--||+ ..+..|.++++.+++....+.+-.+..+....|+
T Consensus 147 ~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~- 225 (449)
T TIGR00400 147 DYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAKPEEILSSIMRSSVFSIVGVNDQEEVARLIQKYD- 225 (449)
T ss_pred CCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCCCCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcC-
Confidence 45788888877641 22223444333 222111111333 2455699999988887766666677777777764
Q ss_pred CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440 194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPF 229 (312)
Q Consensus 194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~f 229 (312)
+..+.|+|. .|+ ..|.++.+++++.+.+-
T Consensus 226 --~~~lpVVD~-~g~----lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 226 --FLAVPVVDN-EGR----LVGIVTVDDIIDVIQSE 254 (449)
T ss_pred --CCEEeEEcC-CCe----EEEEEEHHHHHHHHHhh
Confidence 556667885 465 34778888888777653
No 273
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=20.97 E-value=3.3e+02 Score=22.21 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=35.1
Q ss_pred HHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCC
Q 021440 164 VSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN 218 (312)
Q Consensus 164 V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~ 218 (312)
+.+-....+-.+-+ .......+...|++..+|.++++- .|+.+...+|..+
T Consensus 53 L~~af~~~~~~avv--~~~~e~~L~~r~gv~~~PaLvf~R--~g~~lG~i~gi~d 103 (107)
T PF07449_consen 53 LVKAFPGRFRGAVV--ARAAERALAARFGVRRWPALVFFR--DGRYLGAIEGIRD 103 (107)
T ss_dssp HHCTSTTSEEEEEE--EHHHHHHHHHHHT-TSSSEEEEEE--TTEEEEEEESSST
T ss_pred HHHhhhCccceEEE--CchhHHHHHHHhCCccCCeEEEEE--CCEEEEEecCeec
Confidence 33333444544433 456667889999999999999997 4898888887544
No 274
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.75 E-value=92 Score=26.36 Aligned_cols=54 Identities=11% Similarity=0.133 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEeec--------CCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChh
Q 021440 123 GSFEKAKDAALAQDKWLLVNLQS--------TKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSE 183 (312)
Q Consensus 123 gsf~~A~~~Ak~~~KwLLVniq~--------~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~E 183 (312)
.+|++.++.=.+..+ |+|++.+ +||++|..= -|-|-+-++ ++..|..+++...+
T Consensus 13 e~~~~~~~~~~n~~~-ifvlF~gskd~~tGqSWCPdCV~A------EPvi~~alk~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 13 ESFEETLKNVENGKT-IFVLFLGSKDDTTGQSWCPDCVAA------EPVINEALKHAPEDVHFVHVYVGNRP 77 (128)
T ss_pred HHHHHHHHHHhCCce-EEEEEecccCCCCCCcCCchHHHh------hHHHHHHHHhCCCceEEEEEEecCCC
Confidence 467777776666666 9999887 478888764 345555555 55666666665543
No 275
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=20.32 E-value=2.2e+02 Score=22.80 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=26.3
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440 185 WKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEML 226 (312)
Q Consensus 185 ~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L 226 (312)
.+++..+++..+|++.| + |+ .+.|..+.+.+.+.|
T Consensus 119 ~~~~~~~gi~gtPt~~v-~---g~---~~~G~~~~~~l~~~i 153 (154)
T cd03023 119 RQLARALGITGTPAFII-G---DT---VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHcCCCcCCeEEE-C---CE---EecCCCCHHHHHHHh
Confidence 35667889999999775 3 54 478888888877665
No 276
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=20.01 E-value=79 Score=26.03 Aligned_cols=43 Identities=7% Similarity=0.053 Sum_probs=31.5
Q ss_pred HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEe
Q 021440 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQE 177 (312)
Q Consensus 133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~ 177 (312)
....++.++-+.+..|+.|..+.+.+- +-+.++|..+ |+|..+
T Consensus 9 ~~~a~~~v~~f~d~~Cp~C~~~~~~~~--~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 9 NPDAPITVTEFFDFQCPHCAKFHEELE--KLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp -TTTSEEEEEEE-TTSHHHHHHHHHHH--HHHHHHTTTTTEEEEEEES
T ss_pred CCCCCeEEEEEECCCCHhHHHHHHHHh--hhhhhccCCCceEEEEEEc
Confidence 345688899999999999999999885 7777776543 555544
Done!