Query 021442
Match_columns 312
No_of_seqs 126 out of 1131
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09542 manB phosphomannomuta 100.0 1.4E-53 3.1E-58 419.0 29.3 244 1-293 201-444 (445)
2 cd03089 PMM_PGM The phosphoman 100.0 1.1E-53 2.3E-58 419.8 28.3 241 1-288 200-441 (443)
3 PLN02371 phosphoglucosamine mu 100.0 4.4E-53 9.5E-58 426.9 31.5 281 1-310 301-582 (583)
4 PRK14321 glmM phosphoglucosami 100.0 2.1E-51 4.6E-56 404.0 27.6 242 2-293 203-444 (449)
5 cd05800 PGM_like2 This PGM-lik 100.0 4.6E-51 1E-55 402.9 27.9 248 1-288 210-459 (461)
6 cd05803 PGM_like4 This PGM-lik 100.0 1.3E-50 2.7E-55 398.2 28.1 234 1-286 210-444 (445)
7 cd03087 PGM_like1 This archaea 100.0 1.2E-50 2.6E-55 397.8 27.4 237 1-288 201-437 (439)
8 PRK15414 phosphomannomutase Cp 100.0 2.3E-50 5E-55 397.3 27.1 241 1-291 212-454 (456)
9 cd05805 MPG1_transferase GTP-m 100.0 3.2E-50 6.9E-55 395.0 27.0 231 6-288 209-439 (441)
10 cd03085 PGM1 Phosphoglucomutas 100.0 5.4E-49 1.2E-53 394.3 27.0 279 1-310 246-540 (548)
11 cd05801 PGM_like3 This bacteri 100.0 9.7E-48 2.1E-52 384.2 26.9 255 1-288 247-520 (522)
12 PTZ00150 phosphoglucomutase-2- 100.0 1.7E-47 3.8E-52 386.7 28.9 261 1-274 268-548 (584)
13 PRK07564 phosphoglucomutase; V 100.0 9.6E-48 2.1E-52 385.8 26.8 256 2-293 272-539 (543)
14 COG1109 {ManB} Phosphomannomut 100.0 2.7E-47 5.8E-52 376.2 28.2 243 1-293 215-459 (464)
15 PLN02307 phosphoglucomutase 100.0 1.1E-46 2.4E-51 378.7 29.0 281 1-311 263-572 (579)
16 TIGR01132 pgm phosphoglucomuta 100.0 9.4E-47 2E-51 378.6 27.4 257 1-293 264-540 (543)
17 cd05799 PGM2 This CD includes 100.0 4.8E-46 1E-50 369.6 28.1 232 1-276 226-472 (487)
18 PRK10887 glmM phosphoglucosami 100.0 5.4E-46 1.2E-50 365.2 25.8 225 12-293 216-441 (443)
19 cd03088 ManB ManB is a bacteri 100.0 5.4E-46 1.2E-50 366.6 24.0 245 1-285 200-457 (459)
20 PRK14315 glmM phosphoglucosami 100.0 2.7E-46 5.8E-51 367.8 21.5 223 12-293 221-445 (448)
21 cd03084 phosphohexomutase The 100.0 2.8E-45 6.1E-50 350.6 24.7 204 1-288 149-353 (355)
22 PRK14324 glmM phosphoglucosami 100.0 4.1E-45 9E-50 359.1 26.0 220 13-293 221-442 (446)
23 PRK14317 glmM phosphoglucosami 100.0 9.8E-45 2.1E-49 358.2 27.1 229 7-293 229-462 (465)
24 PRK14316 glmM phosphoglucosami 100.0 3.3E-45 7.1E-50 360.1 23.2 223 13-293 219-443 (448)
25 cd05802 GlmM GlmM is a bacteri 100.0 3E-45 6.5E-50 359.1 22.5 218 12-286 214-433 (434)
26 TIGR01455 glmM phosphoglucosam 100.0 9.8E-45 2.1E-49 356.3 25.4 224 12-292 217-442 (443)
27 PRK14314 glmM phosphoglucosami 100.0 4.7E-45 1E-49 359.2 22.8 224 12-293 222-447 (450)
28 PRK14323 glmM phosphoglucosami 100.0 5.3E-45 1.2E-49 357.9 22.9 223 12-296 218-440 (440)
29 PRK14322 glmM phosphoglucosami 100.0 3.6E-44 7.9E-49 350.9 25.9 217 12-292 210-428 (429)
30 PRK14320 glmM phosphoglucosami 100.0 1.6E-44 3.4E-49 354.8 23.3 223 12-292 217-439 (443)
31 PRK14318 glmM phosphoglucosami 100.0 2.4E-43 5.2E-48 346.9 24.9 223 12-292 220-444 (448)
32 PRK14319 glmM phosphoglucosami 100.0 3.7E-43 8E-48 343.9 25.1 216 12-293 207-424 (430)
33 cd03086 PGM3 PGM3 (phosphogluc 100.0 2.6E-42 5.7E-47 342.9 21.7 235 5-288 228-511 (513)
34 KOG1220 Phosphoglucomutase/pho 100.0 2.1E-39 4.6E-44 314.1 18.2 268 1-281 287-576 (607)
35 PTZ00302 N-acetylglucosamine-p 100.0 2.4E-37 5.1E-42 309.6 24.0 234 5-293 287-580 (585)
36 PLN02895 phosphoacetylglucosam 100.0 3.9E-37 8.5E-42 306.1 21.8 234 5-293 252-553 (562)
37 KOG0625 Phosphoglucomutase [Ca 100.0 5.3E-30 1.1E-34 239.6 20.1 282 1-310 252-550 (558)
38 COG0033 Pgm Phosphoglucomutase 100.0 6.4E-30 1.4E-34 241.2 13.3 258 1-291 243-516 (524)
39 PF02880 PGM_PMM_III: Phosphog 99.9 5.3E-26 1.2E-30 183.5 10.4 112 51-172 1-113 (113)
40 KOG2537 Phosphoglucomutase/pho 99.7 1E-16 2.2E-21 154.3 13.6 215 29-293 279-537 (539)
41 PF00408 PGM_PMM_IV: Phosphogl 99.4 1.7E-13 3.7E-18 101.9 6.0 48 237-291 24-72 (73)
42 PF02879 PGM_PMM_II: Phosphogl 99.1 1.4E-10 2.9E-15 91.9 5.1 46 1-47 58-104 (104)
43 PF09981 DUF2218: Uncharacteri 73.7 29 0.00063 26.5 8.0 54 240-302 33-86 (89)
44 COG1979 Uncharacterized oxidor 72.7 5.4 0.00012 38.1 4.4 49 2-62 62-110 (384)
45 PF15585 Imm46: Immunity prote 63.0 9.3 0.0002 31.4 3.4 42 253-303 5-46 (129)
46 COG0124 HisS Histidyl-tRNA syn 55.8 5.9 0.00013 39.2 1.3 31 238-273 64-94 (429)
47 PRK01964 4-oxalocrotonate taut 47.2 35 0.00077 23.8 3.9 34 265-298 2-36 (64)
48 PF06029 AlkA_N: AlkA N-termin 46.3 56 0.0012 26.2 5.4 49 253-307 45-93 (116)
49 TIGR01006 polys_exp_MPA1 polys 44.6 38 0.00083 30.0 4.7 38 256-294 110-147 (226)
50 cd00491 4Oxalocrotonate_Tautom 44.3 38 0.00082 22.8 3.6 34 265-298 1-35 (58)
51 TIGR01123 ilvE_II branched-cha 43.1 89 0.0019 29.2 7.1 73 19-106 167-248 (313)
52 PF02700 PurS: Phosphoribosylf 41.8 38 0.00083 25.3 3.5 28 266-293 41-68 (80)
53 PF11576 DUF3236: Protein of u 38.0 33 0.00071 28.7 2.8 51 2-52 68-123 (154)
54 PRK05783 hypothetical protein; 37.6 40 0.00088 25.6 3.1 28 266-293 43-71 (84)
55 PRK00745 4-oxalocrotonate taut 37.5 55 0.0012 22.4 3.7 34 265-298 2-36 (62)
56 PF12909 DUF3832: Protein of u 36.7 1.2E+02 0.0025 23.3 5.5 38 251-293 14-52 (89)
57 PRK08452 flagellar protein Fla 35.4 1.7E+02 0.0037 23.9 6.6 50 13-62 57-112 (124)
58 PF14028 SpaB_C: SpaB C-termin 35.3 73 0.0016 29.0 5.1 39 253-292 37-81 (283)
59 PRK00103 rRNA large subunit me 33.8 86 0.0019 26.6 4.9 28 36-63 66-93 (157)
60 PRK02220 4-oxalocrotonate taut 33.0 72 0.0016 21.8 3.6 33 265-297 2-35 (61)
61 PF03646 FlaG: FlaG protein; 31.3 1.5E+02 0.0032 23.0 5.6 50 13-62 41-96 (107)
62 PRK07738 flagellar protein Fla 31.0 2.2E+02 0.0048 23.0 6.5 50 13-62 50-105 (117)
63 COG0079 HisC Histidinol-phosph 30.8 3.1E+02 0.0066 26.4 8.7 46 53-100 85-130 (356)
64 PRK08868 flagellar protein Fla 29.6 2.3E+02 0.0049 23.8 6.5 50 13-62 75-130 (144)
65 PRK00907 hypothetical protein; 29.4 2.1E+02 0.0047 22.0 6.0 36 253-288 47-84 (92)
66 PF09413 DUF2007: Domain of un 28.4 52 0.0011 23.1 2.3 27 261-287 40-66 (67)
67 PRK14644 hypothetical protein; 27.0 1.3E+02 0.0028 24.9 4.7 34 258-292 20-53 (136)
68 PF13199 Glyco_hydro_66: Glyco 26.9 1.9E+02 0.0042 29.8 6.8 110 15-125 247-366 (559)
69 PRK09860 putative alcohol dehy 26.5 95 0.0021 30.1 4.5 47 2-60 65-111 (383)
70 TIGR00689 rpiB_lacA_lacB sugar 26.3 1.3E+02 0.0028 25.2 4.6 26 12-37 41-66 (144)
71 PF07676 PD40: WD40-like Beta 26.2 23 0.00049 21.9 0.1 23 22-44 5-27 (39)
72 KOG3302 TATA-box binding prote 25.9 1.9E+02 0.0041 25.5 5.7 41 252-298 67-108 (200)
73 PRK15454 ethanol dehydrogenase 25.6 96 0.0021 30.2 4.3 46 2-59 83-128 (395)
74 COG4019 Uncharacterized protei 25.5 1.3E+02 0.0029 24.7 4.3 32 21-52 88-124 (156)
75 PF00352 TBP: Transcription fa 25.4 1.4E+02 0.003 22.3 4.3 49 237-295 37-86 (86)
76 PF14492 EFG_II: Elongation Fa 25.1 1.5E+02 0.0034 21.4 4.4 29 263-292 2-30 (75)
77 PRK02289 4-oxalocrotonate taut 24.9 1.2E+02 0.0026 20.9 3.6 27 265-292 2-29 (60)
78 PF14272 Gly_rich_SFCGS: Glyci 24.3 61 0.0013 25.4 2.1 23 17-39 37-59 (115)
79 COG1254 AcyP Acylphosphatases 24.1 1.5E+02 0.0032 22.8 4.3 31 253-287 33-63 (92)
80 smart00135 LY Low-density lipo 24.1 81 0.0018 19.2 2.4 19 29-47 12-30 (43)
81 TIGR03577 EF_0830 conserved hy 23.7 61 0.0013 25.3 2.0 23 17-39 37-59 (115)
82 cd08179 NADPH_BDH NADPH-depend 23.5 1.2E+02 0.0025 29.3 4.4 47 2-60 58-104 (375)
83 PF00017 SH2: SH2 domain; Int 23.1 51 0.0011 23.6 1.5 14 252-265 20-33 (77)
84 TIGR01120 rpiB ribose 5-phosph 23.0 1.6E+02 0.0034 24.6 4.5 31 7-37 36-67 (143)
85 PRK15138 aldehyde reductase; P 22.8 1.2E+02 0.0026 29.5 4.3 47 2-60 62-108 (387)
86 COG1778 Low specificity phosph 22.7 3.6E+02 0.0077 23.2 6.5 71 31-101 11-84 (170)
87 cd08186 Fe-ADH8 Iron-containin 22.6 1.3E+02 0.0027 29.2 4.5 47 2-60 61-107 (383)
88 cd02395 SF1_like-KH Splicing f 22.5 2.4E+02 0.0051 22.8 5.4 43 267-310 68-114 (120)
89 COG1828 PurS Phosphoribosylfor 22.3 1.3E+02 0.0027 22.9 3.4 28 266-293 42-69 (83)
90 cd08185 Fe-ADH1 Iron-containin 21.8 1.3E+02 0.0027 29.1 4.3 47 2-60 60-106 (380)
91 cd08181 PPD-like 1,3-propanedi 21.6 1.3E+02 0.0029 28.7 4.4 46 2-59 60-105 (357)
92 PRK02991 D-serine dehydratase; 21.5 6.5E+02 0.014 25.0 9.3 40 69-108 182-221 (441)
93 PF03439 Spt5-NGN: Early trans 20.8 45 0.00099 25.0 0.8 36 268-306 46-81 (84)
94 cd08176 LPO Lactadehyde:propan 20.8 1.4E+02 0.0031 28.7 4.5 46 2-59 62-107 (377)
95 PF14207 DpnD-PcfM: DpnD/PcfM- 20.7 1.5E+02 0.0032 20.1 3.2 18 268-285 13-30 (48)
96 PF01361 Tautomerase: Tautomer 20.5 1.7E+02 0.0038 19.8 3.7 32 265-296 1-33 (60)
97 cd08178 AAD_C C-terminal alcoh 20.4 1.4E+02 0.0031 29.0 4.4 46 2-59 55-100 (398)
98 TIGR00013 taut 4-oxalocrotonat 20.2 2E+02 0.0044 19.5 4.0 34 265-298 1-36 (63)
99 PF05991 NYN_YacP: YacP-like N 20.0 5.4E+02 0.012 21.7 8.5 22 15-36 32-53 (166)
No 1
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=1.4e-53 Score=418.97 Aligned_cols=244 Identities=25% Similarity=0.356 Sum_probs=216.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCH
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~ 80 (312)
+||+++|||+.+++|+.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++++++++..||.|++||+
T Consensus 201 ~Fp~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgD~DR~~ivd~~G~~l~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~ 280 (445)
T PRK09542 201 TFPNHEANPLDPANLVDLQAFVRETGADIGLAFDGDADRCFVVDERGQPVSPSAVTALVAARELAREPGATIIHNLITSR 280 (445)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCceEEEECCCCCCccHHHHHHHHHHHHHHHCCCCeEEEeeccch
Confidence 59999999998899999999999999999999999999999999999999999999999999998877778999999999
Q ss_pred HHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCC
Q 021442 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (312)
Q Consensus 81 ~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~ 160 (312)
+++++|+++|+++++|||||+|++++|.+.++ +||||+|||++|+++++++|||+++++++ +|++. ++++
T Consensus 281 ~~~~~a~~~g~~~~~t~vG~~~i~~~m~~~~~-----~~ggE~sgg~~f~~~~~~~Dgi~a~~~ll-e~l~~----~~~~ 350 (445)
T PRK09542 281 AVPELVAERGGTPVRTRVGHSFIKALMAETGA-----IFGGEHSAHYYFRDFWGADSGMLAALHVL-AALGE----QDRP 350 (445)
T ss_pred hHHHHHHHcCCeEEEecCcHHHHHHHHHHhCC-----cEEEeeeccEEecCcCCCCcHHHHHHHHH-HHHHh----cCCC
Confidence 99999999999999999999999999998764 89999999999999999999999999775 99987 6899
Q ss_pred HHHHHHHhhhhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCc
Q 021442 161 IGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARM 240 (312)
Q Consensus 161 lsell~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DG 240 (312)
|+++++.+|++| ...+++|++.. ++++|++|.+.+.+. ..+++++||
T Consensus 351 l~~l~~~~~~~~--~~~~~~~~~~~------~~~~~~~l~~~~~~~-------------------------~~~~~~~DG 397 (445)
T PRK09542 351 LSELMADYQRYA--ASGEINSTVAD------APARMEAVLKAFADR-------------------------IVSVDHLDG 397 (445)
T ss_pred HHHHHHhhhhcC--cccceeecCCC------HHHHHHHHHHHhhhc-------------------------cCCceecce
Confidence 999999998754 22356666532 245888887665420 014568999
Q ss_pred eEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 241 YRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 241 lki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
+|+.| ++++|++||||||||++|||+||+++++++++++++.+ .|+.
T Consensus 398 vki~~-----~dg~WvliRpSgTEP~lriy~Ea~~~e~~~~l~~~~~~-~v~~ 444 (445)
T PRK09542 398 VTVDL-----GDGSWFNLRASNTEPLLRLNVEARTEEEVDALVDEVLA-IIRA 444 (445)
T ss_pred EEEEe-----cCCcEEEEEecCCCcEEEEEEEeCCHHHHHHHHHHHHH-Hhhc
Confidence 99998 44569999999999999999999999999999999999 7754
No 2
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=1.1e-53 Score=419.77 Aligned_cols=241 Identities=34% Similarity=0.525 Sum_probs=214.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCH
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~ 80 (312)
+||++.|||+.+++++.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++++.+++..||+|++||.
T Consensus 200 ~F~~~~p~p~~~~~l~~l~~~v~~~~adlgia~D~DaDR~~ivd~~G~~l~~d~~~~lla~~ll~~~~~~~vv~~v~ss~ 279 (443)
T cd03089 200 TFPNHHPDPTDPENLEDLIAAVKENGADLGIAFDGDGDRLGVVDEKGEIIWGDRLLALFARDILKRNPGATIVYDVKCSR 279 (443)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecCCcceeEEECCCCcEeCHHHHHHHHHHHHHHHCCCCeEEEecccch
Confidence 59999999988899999999999999999999999999999999999999999999999999998877668999999999
Q ss_pred HHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCC-CcccCCHHHHHHHHHHHHHHHHhcCCCC
Q 021442 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-NYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (312)
Q Consensus 81 ~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~-~~~~~Dgi~aal~ll~ell~~~~~~~~~ 159 (312)
.++++|+++|+++++|||||+|++++|.+.++ +||||+|||++|++ +.+++|||+++++++ ||++. +++
T Consensus 280 ~~~~ia~~~g~~v~~t~vG~k~v~~~m~~~~~-----~~ggE~sgg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~ 349 (443)
T cd03089 280 NLYDFIEEAGGKPIMWKTGHSFIKAKMKETGA-----LLAGEMSGHIFFKDRWYGFDDGIYAALRLL-ELLSK----SGK 349 (443)
T ss_pred HHHHHHHHcCCeEEEecCcHHHHHHHHHHhCC-----cEEEeccceEEEcCCcCCCccHHHHHHHHH-HHHHh----cCC
Confidence 99999999999999999999999999998774 89999999999999 999999999999765 99997 699
Q ss_pred CHHHHHHHhhhhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcC
Q 021442 160 GIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDAR 239 (312)
Q Consensus 160 ~lsell~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 239 (312)
+|+++++++|++|.....+++|++. . |+++|++|.+..... ..+++++|
T Consensus 350 ~Lsel~~~~p~~~~~~~~~~~~~~~---~---k~~~~~~l~~~~~~~-------------------------~~~~~~~D 398 (443)
T cd03089 350 TLSELLADLPKYFSTPEIRIPVTEE---D---KFAVIERLKEHFEFP-------------------------GAEIIDID 398 (443)
T ss_pred CHHHHHHhccccCCCCceeccCCch---h---HHHHHHHHHHHhccc-------------------------cCCeeeec
Confidence 9999999999855444334445432 1 457999997755420 01466899
Q ss_pred ceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHH
Q 021442 240 MYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (312)
Q Consensus 240 Glki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~ 288 (312)
|+|+.| ++||+|||||||||++|||+||+|+++++++++++.+
T Consensus 399 Giki~~------~~~WvliRpSgtEP~iriy~Ea~~~~~a~~l~~~~~~ 441 (443)
T cd03089 399 GVRVDF------EDGWGLVRASNTEPVLVLRFEADTEEGLEEIKAELRK 441 (443)
T ss_pred CEEEEE------CCeeEEEeecCCCCEEEEEEEeCCHHHHHHHHHHHHh
Confidence 999999 6899999999999999999999999999999998877
No 3
>PLN02371 phosphoglucosamine mutase family protein
Probab=100.00 E-value=4.4e-53 Score=426.94 Aligned_cols=281 Identities=55% Similarity=0.853 Sum_probs=234.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCH
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~ 80 (312)
+||+++|||+.+++|+.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++++.+++..||+|++||+
T Consensus 301 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDaDR~~vvD~~G~~i~gd~l~aLla~~ll~~~~g~~VV~~v~sS~ 380 (583)
T PLN02371 301 MFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDTDVDRSAVVDSSGREINRNRLIALMSAIVLEEHPGTTIVTDSVTSD 380 (583)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCccceeEECCCCEEECHHHHHHHHHHHHHHhCCCCEEEEecccch
Confidence 59999999999999999999999999999999999999999999999999999999999999999877778999999999
Q ss_pred HHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHH-hcCCCC
Q 021442 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMK-LEGSDE 159 (312)
Q Consensus 81 ~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~-~~~~~~ 159 (312)
+++++++++|+++++|||||+|++++|.+.+..+..++||||+|||++|+++++.+||++++++++ ++++.. .+..+.
T Consensus 381 ~l~~ia~~~G~~v~rt~vG~k~v~~~m~~~~~~~~~~~~ggEeSG~~~~~~~~~~dDg~~a~~~il-e~la~~~~~~~~~ 459 (583)
T PLN02371 381 GLTTFIEKKGGKHHRFKRGYKNVIDKGVRLNSDGEETHLMIETSGHGALKENHFLDDGAYLAVKII-IELVRMRAAGAGG 459 (583)
T ss_pred hHHHHHHHcCCeEEEecCchHHHHHHHHHhhccCCceEEEEcccCeEEECCCCCCCcHHHHHHHHH-HHHHHHHhccCCC
Confidence 999999999999999999999999999987654555799999999999999999999999999887 666542 222366
Q ss_pred CHHHHHHHhhhhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcC
Q 021442 160 GIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDAR 239 (312)
Q Consensus 160 ~lsell~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 239 (312)
+|+++++++|++|.....+.+++++.+..+++.+++|++|.+... ..+++ ...+..+|
T Consensus 460 ~Lsel~~~lp~~~~~~~~r~~v~~~~~~~~~kg~~v~~~l~~~~~--~~~~~--------------------~~~~~~~D 517 (583)
T PLN02371 460 GLGDLIEDLEEPLEAVELRLKILDEGKDFKAYGEEVLEHLRNSIE--SDGKL--------------------EGAPVNYE 517 (583)
T ss_pred CHHHHHHhchhccCCceeeecCCccchhHHHHHHHHHHHHHhhhh--ccccc--------------------ccCccccc
Confidence 799999999987766666777655310011112268888875432 11121 12356799
Q ss_pred ceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHhh
Q 021442 240 MYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLASGMDKVLDISQIEKYAE 310 (312)
Q Consensus 240 Glki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
|+|+. +|.+.++||+|||||||||+||||+||.+++.++++++++.+ .|+.. ..||.|-|+||..
T Consensus 518 Gvkv~--~~~~~~~gWvLiRpS~TEP~iri~~Ea~s~e~a~~l~~~~~~-~v~~~---~~~~~~~~~~~~~ 582 (583)
T PLN02371 518 GVRVS--DEGEGFGGWFLLRQSLHDPVIPLNIESSSPGGAQKMALVVLT-WLKEF---AALDASALDKFLD 582 (583)
T ss_pred eEEEE--ecccCCCceEEEEeCCCCceEEEEEeECCHHHHHHHHHHHHH-HHhhh---chhhHHHHHHhhc
Confidence 99998 111127899999999999999999999999999999999999 88765 5699999999864
No 4
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.1e-51 Score=404.05 Aligned_cols=242 Identities=21% Similarity=0.296 Sum_probs=212.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMA 81 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~~ 81 (312)
|| ++|+|. +++++.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++++.+++..||.|++||++
T Consensus 203 f~-~~p~p~-~~~l~~l~~~v~~~~adlGia~DgD~DR~~vvd~~G~~~~~d~~~~l~a~~ll~~~~~~~vV~~v~ss~~ 280 (449)
T PRK14321 203 FV-RELEPN-AKSLSMLAKTVKVLKADVGIAHDGDADRIGVVDDQGNFVEYEVMLSLIAGYMLRKFGKGKIVTTVDAGFA 280 (449)
T ss_pred CC-CCCCCc-hhhHHHHHHHHHHCCCCEEEEecCCCceEEEECCCCCEeChHHHHHHHHHHHHHhCCCCcEEEeccccHH
Confidence 66 479998 7999999999999999999999999999999999999999999999999999987665679999999999
Q ss_pred HHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 021442 82 LTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGI 161 (312)
Q Consensus 82 l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~l 161 (312)
++++|+++|+++++|||||+|++++|.+.++ ++|||+|||++|++|.+++|||+++++++ ++++. ++ +|
T Consensus 281 i~~~a~~~g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sGg~~~~~~~~~~Dgi~a~~~il-e~la~----~~-~L 349 (449)
T PRK14321 281 LDDYIRPLGGEVIRTRVGDVAVAEELAKHGG-----VFGGEPSGTWIIPQWNLTPDGIFAGALVL-EMIDR----LG-PI 349 (449)
T ss_pred HHHHHHHcCCEEEEEecChHHHHHHHHhhCC-----EEEecCCCCEEeCCcCCCCCHHHHHHHHH-HHHHc----CC-CH
Confidence 9999999999999999999999999998774 89999999999999999999999999776 99987 47 99
Q ss_pred HHHHHHhhhhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCce
Q 021442 162 GSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMY 241 (312)
Q Consensus 162 sell~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGl 241 (312)
+++++.+|++|... .+++|++. . |+++|+++.+...+ .+. ..+++++||+
T Consensus 350 s~l~~~~~~~~~~~-~~v~~~~~---~---k~~~~~~l~~~~~~-~~~----------------------~~~v~~~DGv 399 (449)
T PRK14321 350 SELAKEVPRYVTLR-AKIPCPNE---K---KAKAMEIIAKEALK-NFD----------------------YERLIDIDGI 399 (449)
T ss_pred HHHHHhcccccccc-ccccCchh---h---HHHHHHHHHHHhhh-hcc----------------------cCceeecceE
Confidence 99999999765433 35555542 2 46788888665542 111 1246789999
Q ss_pred EEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 242 RAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 242 ki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
|+.+ ++||+|||||||||++|||+||+|+++++++++.+.+ .++.
T Consensus 400 kv~~------~~~WvliRpS~TeP~~riy~Ea~s~e~~~~l~~~~~~-~i~~ 444 (449)
T PRK14321 400 RIEN------DDWWILFRPSGTEPIMRITLEAHTEEKAEELMEKAEK-LVKE 444 (449)
T ss_pred EEec------CCcEEEEecCCCCceEEEEEecCCHHHHHHHHHHHHH-HHHH
Confidence 9988 7899999999999999999999999999999999999 7664
No 5
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=4.6e-51 Score=402.95 Aligned_cols=248 Identities=20% Similarity=0.306 Sum_probs=213.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhC-CCCEEEEcccCC
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH-PGTTIVTDARTS 79 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~-~~~~Vv~~v~sS 79 (312)
+||+++|||+ ++++..+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||+|++||
T Consensus 210 ~F~~~~p~p~-~~~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~~G~~l~~d~~~al~a~~ll~~~~~~~~vv~~v~ss 288 (461)
T cd05800 210 LFGGIPPEPI-EKNLGELAEAVKEGGADLGLATDGDADRIGAVDEKGNFLDPNQILALLLDYLLENKGLRGPVVKTVSTT 288 (461)
T ss_pred CCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEECCCCCeEEEEeCCCceeCHHHHHHHHHHHHHHcCCCCCcEEEEcchH
Confidence 5999999998 79999999999999999999999999999999999999999999999999999873 344799999999
Q ss_pred HHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCC
Q 021442 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (312)
Q Consensus 80 ~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~ 159 (312)
++++++++++|+++++||||+++++++|.+.+ ++||||+|||++|+++++++|||+++++++ ++++. +++
T Consensus 289 ~~~~~~a~~~g~~v~~t~~G~~~v~~~~~~~~-----~~~g~E~sg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~ 358 (461)
T cd05800 289 HLIDRIAEKHGLPVYETPVGFKYIAEKMLEED-----VLIGGEESGGLGIRGHIPERDGILAGLLLL-EAVAK----TGK 358 (461)
T ss_pred HHHHHHHHHhCCeeeeCCCCHHHHHHHHhhCC-----eEEEEcCcCceeCCCCCCCchHHHHHHHHH-HHHHh----hCC
Confidence 99999999999999999999999999999866 499999999999999999999999999876 99987 589
Q ss_pred CHHHHHHHhhhhhc-ceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCc
Q 021442 160 GIGSLIKDLEEPLE-SIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDA 238 (312)
Q Consensus 160 ~lsell~~lp~~~~-~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (312)
+|+++++++|++|. .+..+.++++++ .. ++++|++|.+.... .+.++.+ ..++.+
T Consensus 359 ~L~~l~~~l~~~~g~~~~~~~~i~~~~--~~--~~~v~~~l~~~~~~-~~~~~~~-------------------~~~~~~ 414 (461)
T cd05800 359 PLSELVAELEEEYGPSYYDRIDLRLTP--AQ--KEAILEKLKNEPPL-SIAGGKV-------------------DEVNTI 414 (461)
T ss_pred CHHHHHHHHHHHhCCCceeecCeecCH--HH--HHHHHHHHhccCch-hhCCcee-------------------EEEEec
Confidence 99999999998663 233444444432 11 46799999765432 1222210 246688
Q ss_pred CceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHH
Q 021442 239 RMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (312)
Q Consensus 239 DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~ 288 (312)
||+|+.| ++++|++||||||||++|||+||++++.++++++++.+
T Consensus 415 dGvrv~~-----~d~~wvlvRpS~tep~iriy~Ea~~~~~a~~l~~~~~~ 459 (461)
T cd05800 415 DGVKLVL-----EDGSWLLIRPSGTEPLLRIYAEAPSPEKVEALLDAGKK 459 (461)
T ss_pred CeEEEEE-----cCCcEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHh
Confidence 9999998 45679999999999999999999999999999998887
No 6
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.3e-50 Score=398.20 Aligned_cols=234 Identities=24% Similarity=0.356 Sum_probs=206.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHh-CCCCEEEEcccCC
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE-HPGTTIVTDARTS 79 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~-~~~~~Vv~~v~sS 79 (312)
.|| +.|+|. |++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++. .++..||.|++||
T Consensus 210 ~F~-~~p~p~-~~~l~~l~~~v~~~~adlgi~~D~DgDR~~ivd~~G~~i~~d~~~al~a~~ll~~~~~~~~vv~~v~ss 287 (445)
T cd05803 210 LFP-HTPEPL-PENLTQLCAAVKESGADVGFAVDPDADRLALVDEDGRPIGEEYTLALAVDYVLKYGGRKGPVVVNLSTS 287 (445)
T ss_pred CCC-CCCCCC-hHHHHHHHHHHHhcCCCEEEeeCCCCceEEEECCCCCCcChHHHHHHHHHHHHHhcCCCCCEEEeccch
Confidence 488 799998 7999999999999999999999999999999999999999999999999999983 3333699999999
Q ss_pred HHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCC
Q 021442 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (312)
Q Consensus 80 ~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~ 159 (312)
.+++++|+++|+++++|||||+|++++|.+.++ +||||+|||++|+++.+++|||+++++++ |+++. +++
T Consensus 288 ~~i~~ia~~~g~~v~~t~vG~~~i~~~~~~~~~-----~~g~E~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~----~~~ 357 (445)
T cd05803 288 RALEDIARKHGVPVFRSAVGEANVVEKMKEVDA-----VIGGEGNGGVILPDVHYGRDSLVGIALVL-QLLAA----SGK 357 (445)
T ss_pred HHHHHHHHHcCCEEEEecccHHHHHHHHHhcCC-----eEEEeccCCeecCCccccccHHHHHHHHH-HHHHh----cCC
Confidence 999999999999999999999999999998764 89999999999999999999999999876 99997 599
Q ss_pred CHHHHHHHhhhhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcC
Q 021442 160 GIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDAR 239 (312)
Q Consensus 160 ~lsell~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 239 (312)
+|+++++++|.+|... .+++|+++ . ++++|++|.+..+. .+++.+|
T Consensus 358 ~L~~l~~~~~~~~~~~-~~v~~~~~---~---~~~i~~~l~~~~~~---------------------------~~v~~~D 403 (445)
T cd05803 358 PLSEIVDELPQYYISK-TKVTIAGE---A---LERLLKKLEAYFKD---------------------------AEASTLD 403 (445)
T ss_pred CHHHHHHhchhhheee-eeeeccHH---h---HHHHHHHHHHhccc---------------------------CCcccCc
Confidence 9999999999765433 45555432 2 46799999765432 2466899
Q ss_pred ceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHH
Q 021442 240 MYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSL 286 (312)
Q Consensus 240 Glki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~ 286 (312)
|+|+.| ++||++||||||||++|||+|+.|++.++++++.+
T Consensus 404 Gik~~~------~~~W~liRpS~teP~~riy~Ea~s~e~a~~l~~~~ 444 (445)
T cd05803 404 GLRLDS------EDSWVHVRPSNTEPIVRIIAEAPTQDEAEALADRF 444 (445)
T ss_pred eEEEec------CCeEEEEeccCCccEEEEEEecCCHHHHHHHHHhh
Confidence 999998 67999999999999999999999999999998865
No 7
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.2e-50 Score=397.79 Aligned_cols=237 Identities=22% Similarity=0.357 Sum_probs=210.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCH
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~ 80 (312)
+||+++|+|. +++++++.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++. ++..||.|++||+
T Consensus 201 ~f~~~~p~p~-~~~l~~l~~~v~~~~adlgia~D~DgDR~~~vd~~G~~l~~d~~~~l~a~~ll~~-~~~~vv~~v~ss~ 278 (439)
T cd03087 201 FFPGRPPEPT-PENLSELMELVRATGADLGIAHDGDADRAVFVDEKGRFIDGDKLLALLAKYLLEE-GGGKVVTPVDASM 278 (439)
T ss_pred CCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEEcCCCceEEEECCCCCEechHHHHHHHHHHHHhc-CCCcEEEeccchH
Confidence 5999999998 8999999999999999999999999999999999999999999999999999987 5558999999999
Q ss_pred HHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCC
Q 021442 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (312)
Q Consensus 81 ~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~ 160 (312)
+++++|+++|+++++|+|||+|++++|.+.+ ++||||+|||++|+++.+++|||+++++++ |+++. . ++
T Consensus 279 ~l~~~a~~~g~~~~~~~~G~k~i~~~m~~~~-----~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ll-e~l~~----~-~~ 347 (439)
T cd03087 279 LVEDVVEEAGGEVIRTPVGDVHVAEEMIENG-----AVFGGEPNGGWIFPDHQLCRDGIMTAALLL-ELLAE----E-KP 347 (439)
T ss_pred HHHHHHHHcCCEEEEEecChHHHHHHHHhcC-----CeEEecCCCCEecCCcCCcCCHHHHHHHHH-HHHhc----C-CC
Confidence 9999999999999999999999999998865 489999999999999999999999999776 99887 6 89
Q ss_pred HHHHHHHhhhhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCc
Q 021442 161 IGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARM 240 (312)
Q Consensus 161 lsell~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DG 240 (312)
|+++++++|++|... .+++|+++ . ++++|++|.+..+.. + ..++.+||
T Consensus 348 l~~~~~~~~~~~~~~-~~v~~~~~---~---~~~i~~~l~~~~~~~---~----------------------~~i~~~DG 395 (439)
T cd03087 348 LSELLDELPKYPLLR-EKVECPDE---K---KEEVMEAVEEELSDA---D----------------------EDVDTIDG 395 (439)
T ss_pred HHHHHHhcccccccc-ccccCChH---h---HHHHHHHHHHhhhhc---c----------------------CCeeecce
Confidence 999999998765433 35555532 2 357999997754310 0 24668999
Q ss_pred eEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHH
Q 021442 241 YRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (312)
Q Consensus 241 lki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~ 288 (312)
+|+.+ ++||++||||||||++|+|+|+.|++.++++++.+.+
T Consensus 396 ~k~~~------~~~WvliRpS~tep~~rvy~Ea~~~~~a~~l~~~~~~ 437 (439)
T cd03087 396 VRIEY------EDGWVLIRPSGTEPKIRITAEAKTEERAKELLEEGRS 437 (439)
T ss_pred EEEec------CCcEEEEeccCCccEEEEEEeeCCHHHHHHHHHHHHh
Confidence 99998 6799999999999999999999999999999998877
No 8
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=100.00 E-value=2.3e-50 Score=397.33 Aligned_cols=241 Identities=24% Similarity=0.334 Sum_probs=206.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCH
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~ 80 (312)
+||+++|||+.+++++.+.++|++.+||+||++||||||++++|++|+++++|++++|+++++++.+++.+||.++.+|.
T Consensus 212 ~F~~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vde~G~~l~~d~~~~l~a~~ll~~~~g~~vv~~~~~s~ 291 (456)
T PRK15414 212 NFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSW 291 (456)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcceEEEECCCCCEecHHHHHHHHHHHHHHhCCCCeeccCchhhh
Confidence 49999999998999999999999999999999999999999999999999999999999999998777767999888888
Q ss_pred HHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCC
Q 021442 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (312)
Q Consensus 81 ~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~ 160 (312)
.++++++++|+++++|||||+|++++|.+.+ ++||||+|||++|++|.+++|||+++++++ |+++. .+++
T Consensus 292 ~l~~~~~~~g~~~~~t~vG~~~i~~~m~~~~-----~~~ggE~sgg~~~~~~~~~~Dgi~a~~~il-e~la~----~~~~ 361 (456)
T PRK15414 292 NTVDVVTAAGGTPVMSKTGHAFIKERMRKED-----AIYGGEMSAHHYFRDFAYCDSGMIPWLLVA-ELVCL----KGKT 361 (456)
T ss_pred HHHHHHHHcCCEEEEecCcHHHHHHHHHhcC-----CeEEEcccceEEeCCCCCCccHHHHHHHHH-HHHHc----cCCC
Confidence 9999999999999999999999999999876 489999999999999999999999999765 99987 6999
Q ss_pred HHHHHHHhhhhhcc-eeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcC
Q 021442 161 IGSLIKDLEEPLES-IELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDAR 239 (312)
Q Consensus 161 lsell~~lp~~~~~-~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 239 (312)
|+++++++++.|+. ...++++++. +. .++++|+++.+.. .+++++|
T Consensus 362 L~~l~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~-----------------------------~~~~~~D 408 (456)
T PRK15414 362 LGELVRDRMAAFPASGEINSKLAQP--VE--AINRVEQHFSREA-----------------------------LAVDRTD 408 (456)
T ss_pred HHHHHHHHHHhcCCCCccccCCCCH--HH--HHHHHHHHhcccc-----------------------------CcEEecc
Confidence 99999987766643 2333444432 21 1344555442211 2466899
Q ss_pred ceEEEEeecccCCceEEEEecCCCCccEEEEEEeC-ChhhHHHHHHHHHHHHh
Q 021442 240 MYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSM-VPGGCRSITKSLRDKFL 291 (312)
Q Consensus 240 Glki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~-~~~~a~~l~~~~~~~~~ 291 (312)
|+|+.| ++||++||||||||++|||+||+ +++.++++++++.. .|
T Consensus 409 Gvki~~------~~~~lllRpSgTEP~iri~~Ea~~~~~~~~~~~~~~~~-~~ 454 (456)
T PRK15414 409 GISMTF------ADWRFNLRSSNTEPVVRLNVESRGDVPLMEARTRTLLT-LL 454 (456)
T ss_pred eeEEEe------CCceEEEecCCCceEEEEEEecCCCHHHHHHHHHHHHH-Hh
Confidence 999998 67889999999999999999998 89999999988877 54
No 9
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=3.2e-50 Score=394.96 Aligned_cols=231 Identities=18% Similarity=0.213 Sum_probs=204.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCHHHHHH
Q 021442 6 IPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKF 85 (312)
Q Consensus 6 ~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~~l~~i 85 (312)
+|+| ++++++.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++++..++..||.|++||.+++++
T Consensus 209 ~~~~-~~~~l~~l~~~v~~~~adlgia~DgDaDR~~vvd~~G~~~~gd~l~~l~a~~ll~~~~~~~vv~~v~ss~~l~~~ 287 (441)
T cd05805 209 TDTE-RQRSLDRLGRIVKALGADFGVIIDPNGERLILVDEAGRVISDDLLTALVSLLVLKSEPGGTVVVPVTAPSVIEQL 287 (441)
T ss_pred CCcc-chhHHHHHHHHHHhCCCCEEEEEcCCCCEEEEECCCCCEEChhHHHHHHHHHHHHhCCCCeEEEEccchHHHHHH
Confidence 4555 589999999999999999999999999999999999999999999999999999865556899999999999999
Q ss_pred HHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 021442 86 ITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLI 165 (312)
Q Consensus 86 a~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell 165 (312)
++++|+++++|+|||+|++++|.+ + ++||||+|||++|+++.+++||++++++++ ||++. ++++|++++
T Consensus 288 a~~~g~~~~~t~vG~~~i~~~m~~-~-----~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~----~~~~l~~l~ 356 (441)
T cd05805 288 AERYGGRVIRTKTSPQALMEAALE-N-----VVLAGDGDGGFIFPEFHPGFDAIAALVKIL-EMLAR----TNISLSQIV 356 (441)
T ss_pred HHHcCCEEEEEeCChHHHHHHHHh-c-----ccccccCCCcEEccccccCchHHHHHHHHH-HHHHh----cCCCHHHHH
Confidence 999999999999999999999998 4 489999999999999999999999999765 99997 699999999
Q ss_pred HHhhhhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEE
Q 021442 166 KDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKV 245 (312)
Q Consensus 166 ~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~ 245 (312)
+++|++|..+ .+++|++. . ++++|++|.+.++. .+++++||+|+.|
T Consensus 357 ~~l~~~~~~~-~~~~~~~~---~---~~~~~~~l~~~~~~---------------------------~~~~~~DGvri~~ 402 (441)
T cd05805 357 DELPRFYVLH-KEVPCPWE---A---KGRVMRRLIEEAPD---------------------------KSIELIDGVKIYE 402 (441)
T ss_pred HhCchhheee-eEEECChH---H---hhHHHHHHHHhcCC---------------------------CCceecceeEEec
Confidence 9999876543 45555532 1 34688888764431 2456899999998
Q ss_pred eecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHH
Q 021442 246 TDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (312)
Q Consensus 246 ~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~ 288 (312)
++||++||||||||+||+|+||++++.++++++++.+
T Consensus 403 ------~~gW~liRpS~TeP~iri~~Ea~~~~~~~~l~~~~~~ 439 (441)
T cd05805 403 ------DDGWVLVLPDADEPLCHIYAEGSDQERAEELTEFYVE 439 (441)
T ss_pred ------CCCEEEEecCCCCCEEEEEEecCCHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999998876
No 10
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=5.4e-49 Score=394.26 Aligned_cols=279 Identities=15% Similarity=0.147 Sum_probs=221.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHh----CCC-CEEEEc
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE----HPG-TTIVTD 75 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~----~~~-~~Vv~~ 75 (312)
+||+++|||+ ++++.+|.+.|++.+||+||++||||||++++|+ |+++++++++++++.+++.. .++ ..||.|
T Consensus 246 ~Fp~~~P~P~-~~~l~~L~~~V~~~~ADlGia~DgDaDRl~vvd~-G~~i~~d~~lall~~~ll~~~~~~~~~~~~VV~t 323 (548)
T cd03085 246 DFGGGHPDPN-LTYAKDLVELMKSGEPDFGAASDGDGDRNMILGK-GFFVTPSDSVAVIAANAKLIPYFYKGGLKGVARS 323 (548)
T ss_pred CCCCCCCCCc-HHHHHHHHHHHhccCCCEEEEECCCCCceEEEec-CEEecCCHHHHHHHHHHHHhhhhhhcCCcEEEEe
Confidence 5999999999 7999999999999999999999999999999999 99999999999999998853 233 379999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhc
Q 021442 76 ARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLE 155 (312)
Q Consensus 76 v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~ 155 (312)
++||++++++|+++|+++++|+|||+||.++|.+.+ ++||||+|||++ +++.+++|||+++++++ ||++.
T Consensus 324 v~sS~~le~ia~~~G~~v~~t~vG~k~I~~~m~~~~-----~~~GgEeSgg~~-~~~~~~kDGi~aal~ll-ella~--- 393 (548)
T cd03085 324 MPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAGK-----LSLCGEESFGTG-SDHIREKDGLWAVLAWL-SILAH--- 393 (548)
T ss_pred CccHHHHHHHHHHcCCcEEEcCchHHHHHHHHhcCC-----ceEEEeccCCcc-CCCccCCcHHHHHHHHH-HHHHH---
Confidence 999999999999999999999999999999999865 489999999996 99999999999999765 99998
Q ss_pred CCCCCHHHHHHHhhhhhccee-EEEEee-cCchhhHhHHHHHHHHHHhhhhh--cc----cCCccccccCcccccccccc
Q 021442 156 GSDEGIGSLIKDLEEPLESIE-LRMNII-SEPRYAKAKGSEAIEEFRKYIEE--GR----LQGWELDSCGDCWVSEGCLV 227 (312)
Q Consensus 156 ~~~~~lsell~~lp~~~~~~~-~~i~~~-~~~~~~~~~~~~~m~~l~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~ 227 (312)
++++|++++++||+.|..+. .+.... +. +.+ ++++|++|++..++ .. +.+.+|+.+-|+.+....
T Consensus 394 -~g~tLsell~~i~~~~G~~~~~~~~~~~~~--~~~--k~~im~~l~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~-- 466 (548)
T cd03085 394 -RNVSVEDIVKEHWQKYGRNFYTRYDYEEVD--SEA--ANKMMDHLRALVSDLPGVGKSGDKGYKVAKADDFSYTDPV-- 466 (548)
T ss_pred -HCcCHHHHHHHHHHHhCcceeecccccCCC--HHH--HHHHHHHHHhccccCccccccccCCceEEEEecceeccCC--
Confidence 59999999999998775432 333322 22 222 57899999753211 12 567777666666522110
Q ss_pred CCCCCCcccCcCceEEEEeecccCCceEEEEecCCCC---ccEEEEEEeCChhhHHHHHHHHHHHHhhhcccccccchhh
Q 021442 228 DSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHN---PNIAVNVQSMVPGGCRSITKSLRDKFLLASGMDKVLDISQ 304 (312)
Q Consensus 228 ~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTE---P~iriy~Ea~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (312)
+..+.+.||+|+.| ++++|+++|||||| |+||+|+|+.+++-.+--+ +... .|+.+ ++.-|++|+
T Consensus 467 ----~~~~~~~dglk~~~-----~~g~wi~iRpSGTE~~~Pkir~Y~E~~~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~ 534 (548)
T cd03085 467 ----DGSVSKKQGLRIIF-----EDGSRIIFRLSGTGSSGATIRLYIESYEKDPSKYGL-DAQV-ALKPL-IEIALKLSK 534 (548)
T ss_pred ----CCCcChhceEEEEE-----CCCeEEEEECCCCCCCCceEEEEEEEecCChhhccc-CHHH-HHHHH-HHHHHHHhC
Confidence 12356799999999 66789999999999 8999999998766522111 1112 23333 566789999
Q ss_pred HHHHhh
Q 021442 305 IEKYAE 310 (312)
Q Consensus 305 ~~~~~~ 310 (312)
|.+||-
T Consensus 535 ~~~~~~ 540 (548)
T cd03085 535 LKEFTG 540 (548)
T ss_pred hHHHhC
Confidence 999984
No 11
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=9.7e-48 Score=384.23 Aligned_cols=255 Identities=15% Similarity=0.164 Sum_probs=202.0
Q ss_pred CCCCCCC--------CCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCC----
Q 021442 1 MFPNHIP--------NPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP---- 68 (312)
Q Consensus 1 ~Fp~~~P--------~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~---- 68 (312)
+||+++| ||+.+++++.+.+. ..+||+||++||||||++++|++|+++++|++++|+++++++.++
T Consensus 247 ~f~~~~p~~~~~~~~~p~~~~~l~~l~~~--~~~adlGia~DgDaDRl~vvd~~G~~l~gd~~~aLla~~ll~~~~~~~~ 324 (522)
T cd05801 247 TFRFMTLDHDGKIRMDCSSPYAMAGLLKL--KDKFDLAFANDPDADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPLWNK 324 (522)
T ss_pred CCCCCCCCcccCCCCCCCCHHHHHHHHHh--hcCCCEEEEECCCccceeEEecCCeEECHHHHHHHHHHHHHHhCcccCC
Confidence 4776665 45557888888876 348999999999999999999999999999999999999998754
Q ss_pred CCEEEEcccCCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCC-----CcccCCHHHHHH
Q 021442 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVV 143 (312)
Q Consensus 69 ~~~Vv~~v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~-----~~~~~Dgi~aal 143 (312)
+..||.+++||++++++|+++|+++++|+|||+||.++|++.+ ++||||+|||++|++ +.+++|||++++
T Consensus 325 ~~~vv~tv~sS~~l~~ia~~~g~~~~~t~vG~k~i~~~m~~~~-----~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l 399 (522)
T cd05801 325 SAGVGKTLVSSSMIDRVAAALGRKLYEVPVGFKWFVDGLLDGS-----LGFGGEESAGASFLRRDGTVWTTDKDGIIMCL 399 (522)
T ss_pred CceEEEEcchHHHHHHHHHHcCCeeeecCccHHHHHHHHhcCC-----eEEEEeccCceEeccCCCCCcccCchHHHHHH
Confidence 4589999999999999999999999999999999999999865 489999999999988 889999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhhhhh-cceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccc
Q 021442 144 KIIIQMVRMKLEGSDEGIGSLIKDLEEPL-ESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVS 222 (312)
Q Consensus 144 ~ll~ell~~~~~~~~~~lsell~~lp~~~-~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~ 222 (312)
+++ |+++. ++++|+++++++|++| .....++++++. +.. ++.+++.+.+......+.+.++..+-++
T Consensus 400 ~~l-e~la~----~~~~L~~~l~~l~~~~g~~~~~~~~v~~~--~~~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 467 (522)
T cd05801 400 LAA-EILAV----TGKDPGQLYQELTERFGEPYYARIDAPAT--PEQ--KARLKKLSPEQVTATELAGDPILAKLTR--- 467 (522)
T ss_pred HHH-HHHHH----hCCCHHHHHHHHHHHHCcCeeeccCCCCh--HHH--HHHHHHHhccCCCchHhCCCceEEEEec---
Confidence 765 99987 5999999999999877 555556666553 221 2344433322111112333322111000
Q ss_pred cccccCCCCCCcccCcCceEEEEeecccCCceEEEEecCCCCccEEEEEEe-CChhhHHHHHHHHHH
Q 021442 223 EGCLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQS-MVPGGCRSITKSLRD 288 (312)
Q Consensus 223 ~~~~~~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea-~~~~~a~~l~~~~~~ 288 (312)
.. ..+.++||+|+.| ++||++||||||||+||||+|| .+++.++++++.+.+
T Consensus 468 -----~~---~~~~~~DGvk~~~------~~gWvliRpSgTEP~iriy~Ea~~~~~~~~~l~~~~~~ 520 (522)
T cd05801 468 -----AP---GNGASIGGLKVTT------ANGWFAARPSGTEDVYKIYAESFLSEEHLKKIQKEAQE 520 (522)
T ss_pred -----cc---CCCccCceEEEEE------cCeEEEEEccCCCceEEEEEEecCCHHHHHHHHHHHHH
Confidence 00 1244799999999 6789999999999999999999 699999999888776
No 12
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=386.71 Aligned_cols=261 Identities=17% Similarity=0.166 Sum_probs=209.2
Q ss_pred CCCCC-CCCCCC-hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCC---cccChhHHHHHHHHHHHHhCC-------
Q 021442 1 MFPNH-IPNPED-KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKG---NPINGDKLIALMSAIVLKEHP------- 68 (312)
Q Consensus 1 ~Fp~~-~P~P~~-~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G---~~l~~d~~~~Ll~~~ll~~~~------- 68 (312)
+||++ +|||++ +++++.+.+.+++.+||+||++||||||++++|+.| +++++|++++|+++++++.++
T Consensus 268 ~Fp~~~~PnPe~~~~~l~~~~~~v~~~~adlgia~DpDaDR~~vvd~~g~~~~~l~gd~l~aLla~~ll~~~~~~g~~~~ 347 (584)
T PTZ00150 268 EFPTVTFPNPEEGKGALKLSMETAEAHGSTVVLANDPDADRLAVAEKLNNGWKIFTGNELGALLAWWAMKRYRRQGIDKS 347 (584)
T ss_pred CCCCCCCcChhhhHHHHHHHHHHHHHhCCCEEEEeCCCCCceEEEEEcCCceEEcChhHHHHHHHHHHHHhhhhcCCCCC
Confidence 58987 799997 899999999999999999999999999999998765 899999999999999998642
Q ss_pred CCEEEEcccCCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCc-ceeEEeecccCccCCCCcccCCHHHHHHHHHH
Q 021442 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGI-ETHLMMETSGHGALKENYFLDDGAYMVVKIII 147 (312)
Q Consensus 69 ~~~Vv~~v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~-~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ 147 (312)
+..||.|++||.+++++|+++|+++++|+|||+||+++|.+.+..+. +++||||||||++|+++.+++|||+++++++
T Consensus 348 ~~~Vv~tv~sS~~l~~ia~~~g~~v~~t~tGfk~I~~~m~~~~~~~~~~~~~ggEeSgG~~~~~~~~~kDgi~aal~il- 426 (584)
T PTZ00150 348 KCFFICTVVSSRMLKKMAEKEGFQYDETLTGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVA- 426 (584)
T ss_pred CcEEEEehhhhHHHHHHHHHcCCEEEECCCChHHHHHHHHHHHhcCCceEEEEEeccCcccCCCCCCCcHHHHHHHHHH-
Confidence 23599999999999999999999999999999999999986332221 3699999999999999999999999999765
Q ss_pred HHHHHHhcCCCCCHHHHHHHhhhhhccee-EEEE-eecCchhhHhHHHHHHHHHHh--hhhhcccCCccccccCcccccc
Q 021442 148 QMVRMKLEGSDEGIGSLIKDLEEPLESIE-LRMN-IISEPRYAKAKGSEAIEEFRK--YIEEGRLQGWELDSCGDCWVSE 223 (312)
Q Consensus 148 ell~~~~~~~~~~lsell~~lp~~~~~~~-~~i~-~~~~~~~~~~~~~~~m~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 223 (312)
||++. ++.+|++|++++++||..|..+. .+.. +... .+++.++|..|++ ..+ ..++|.+|+.+.+|+...
T Consensus 427 e~~~~-l~~~g~sL~e~l~~l~~~~G~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-~~~~g~~v~~~~d~~~~~ 500 (584)
T PTZ00150 427 EMALY-LYERGKTLVEHLESLYKQYGYHFTNNSYYICYD----PSRIVSIFNDIRNNGSYP-TKLGGYPVTRIRDLTTGY 500 (584)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHCCCccceeeEecCC----HHHHHHHHHHHhccCCcc-hhhCCeeEEEEEeccccc
Confidence 99542 22369999999999999986433 1221 3321 1123467777876 333 578888888888886544
Q ss_pred ccccCCCCCCccc---CcCceEEEEeecccCCceEEEEecCCCCccEEEEEEeC
Q 021442 224 GCLVDSNESPAAI---DARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSM 274 (312)
Q Consensus 224 ~~~~~~~~~~~~~---~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~ 274 (312)
......+.. ... ..||+|+.| ++++|+++|||||||+||+|+|+.
T Consensus 501 ~~~~~~~~~-~lp~~~~~~~lk~~~-----~~g~~~~~RpSGTEPkik~Y~e~~ 548 (584)
T PTZ00150 501 DTATPDGKP-LLPVSASTQMITFYF-----ENGAIITIRGSGTEPKLKWYAELS 548 (584)
T ss_pred ccccCCCcc-cCCCcccCCeEEEEE-----cCCeEEEEEcCCCCCeEEEEEEec
Confidence 443322221 112 479999999 666799999999999999999993
No 13
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=9.6e-48 Score=385.77 Aligned_cols=256 Identities=16% Similarity=0.169 Sum_probs=203.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCC----CCEEEEccc
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP----GTTIVTDAR 77 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~----~~~Vv~~v~ 77 (312)
||+|+|||+.+++|..+.+ ++.+||+||++||||||++++|+ |+++++|++++|++.+++++.+ +..||.|++
T Consensus 272 ~~~~~p~P~~~~~L~~l~~--~~~~adlGia~DgDgDRl~vvd~-G~~i~~d~~~alla~~ll~~~~~~~~~~~Vv~~v~ 348 (543)
T PRK07564 272 DGKIRMDCSSPYAMAGLLA--LKDAFDLAFANDPDGDRHGIVTP-GGLMNPNHYLAVAIAYLFHHRPGWRAGAGVGKTLV 348 (543)
T ss_pred cCCcCCCCChHHHHHHHHh--hccCCCEEEEECCCCCceeEEec-CeeechhHHHHHHHHHHHHhCcCCCCCceEEEEec
Confidence 5688999998777766655 57899999999999999999999 9999999999999999987532 337999999
Q ss_pred CCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCC-----CcccCCHHHHHHHHHHHHHHH
Q 021442 78 TSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVVKIIIQMVRM 152 (312)
Q Consensus 78 sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~-----~~~~~Dgi~aal~ll~ell~~ 152 (312)
||.+++++|+++|+++++|+|||+|++++|.+.+ ++||||+|||++|.. +.+++|||+++++++ ||++.
T Consensus 349 sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~~-----~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~il-e~la~ 422 (543)
T PRK07564 349 SSAMIDRVAAKLGRKLYEVPVGFKWFVNGLDDGS-----LGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAA-EILAV 422 (543)
T ss_pred chHHHHHHHHHhCCeeeecchHHHHHHHHHhcCc-----eEEEecCcCCeeecccCCCCccccchHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999865 599999999996643 688999999999765 99987
Q ss_pred HhcCCCCCHHHHHHHhhhhhcc-eeEEEEeecCchhhHhHHHHHHHHHHhhhhh-cccCCccccccCccccccccccCCC
Q 021442 153 KLEGSDEGIGSLIKDLEEPLES-IELRMNIISEPRYAKAKGSEAIEEFRKYIEE-GRLQGWELDSCGDCWVSEGCLVDSN 230 (312)
Q Consensus 153 ~~~~~~~~lsell~~lp~~~~~-~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (312)
++++|+++++++|+.|.. ++.++++++. +.. |+ .|++|.+...+ ..+++.++.. ..+ +.
T Consensus 423 ----~~~~L~ell~~l~~~~g~~~~~~~~~~~~--~~~--k~-~~~~l~~~~~~~~~~~~~~~~~--------~~~-~~- 483 (543)
T PRK07564 423 ----TGKSPSEIYRELWARFGRPYYSRHDAPAT--PEQ--KA-ALRKLSPELVGATELAGDPIDA--------SLT-EA- 483 (543)
T ss_pred ----hCCCHHHHHHHHHHHhCCceEEEecCCcc--HHH--HH-HHHHHhccCCCchhhCCcceEE--------EEe-cC-
Confidence 599999999999987643 3455665543 221 22 47888654321 2344432110 000 00
Q ss_pred CCCcccCcCceEEEEeecccCCceEEEEecCCCCccEEEEEEe-CChhhHHHHHHHHHHHHhhh
Q 021442 231 ESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQS-MVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 231 ~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea-~~~~~a~~l~~~~~~~~~~~ 293 (312)
+...+.+||+|+.| ++||++||||||||+||||+|+ .+++.++++++++.+ +|+.
T Consensus 484 -~~~~~~~DGlki~~------~~gWvlvRpSgTEP~iriy~Ea~~~~~~~~~l~~~~~~-~~~~ 539 (543)
T PRK07564 484 -PGNGAAIGGLKVVT------ENGWFAARPSGTETTYKIYAESFEGDEHLHQIQKEAQE-IVAD 539 (543)
T ss_pred -cCCcccCCeEEEEE------cCCEEEEEccCCCCeEEEEEEecCCHHHHHHHHHHHHH-HHHH
Confidence 00013589999998 6789999999999999999999 689999999999998 7764
No 14
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-47 Score=376.20 Aligned_cols=243 Identities=26% Similarity=0.384 Sum_probs=208.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCH
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~ 80 (312)
+||+++|||+++..+ .+.+.+++.+||+|||+||||||++++|++|++++||++++|++.+++.......||.|++||.
T Consensus 215 ~fp~~~p~p~~~~~~-~l~~~v~~~~aDlgia~DgDaDR~~~vd~~G~~~~Gd~i~~lla~~l~~~~~~~~vV~tv~ss~ 293 (464)
T COG1109 215 LFPNINPNPGETELL-DLAKAVKEHGADLGIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLEKGKLPTVVTTVMSSL 293 (464)
T ss_pred CCCCCCCCCCCccHH-HHHHHHHhcCCCEEEEecCCCceEEEEcCCCCEeCccHHHHHHHHHHHhcCCCCeEEEecccch
Confidence 599999999975544 8899999999999999999999999999999999999999999999998643337999999999
Q ss_pred HHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCC
Q 021442 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (312)
Q Consensus 81 ~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~ 160 (312)
.++.+++.+|+++++|+|||+||+++|++.++ +||||+|||++|+++.+++||++++++++ +|++. .+++
T Consensus 294 ~~~~i~~~~g~~~~~t~vG~~~i~~~~~~~~~-----~~g~E~sg~~~~~~~~~~~Dgi~aal~il-el~~~----~~~~ 363 (464)
T COG1109 294 ALEKIAKKLGGKVVRTKVGDKYIAEKMRENGA-----VFGGEESGHIIFPDHVRTGDGLLAALLVL-ELLAE----SGKS 363 (464)
T ss_pred hHHHHHHHcCCeEEEecCchHHHHHHHHhcCC-----eEEEcccCCEEECCCCcCCcHHHHHHHHH-HHHHH----hCCC
Confidence 99999999999999999999999999999885 89999999999999999999999999765 99987 4779
Q ss_pred HHHHHHH-hhhhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcC
Q 021442 161 IGSLIKD-LEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDAR 239 (312)
Q Consensus 161 lsell~~-lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 239 (312)
+++++.. +|++|.+...+++|..+. + ..+|+++.+..+.. ..+..+|
T Consensus 364 lsel~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~--------------------------~~~~~id 411 (464)
T COG1109 364 LSELLAELLPKYPQSVEINVRVTDEG---K---AEVLEKLLEELREA--------------------------KKVDTID 411 (464)
T ss_pred HHHHHHhhccccCCcceEeEEEccch---h---hhHHHHHHHhCccc--------------------------ceeeeee
Confidence 9999999 887765455566665431 1 14566665554420 1355789
Q ss_pred ceEEEEeecccCCceEE-EEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 240 MYRAKVTDEEHGQYGWI-HLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 240 Glki~~~~~~~~~~~wv-liRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
|+|+.+ ++||. +||||||||++|+|+|+.+++.++++.+++.+ +++.
T Consensus 412 gv~~~~------~~g~~~lvRpSGTEP~lrvy~Ea~~~~~~~~~~~~~~~-~v~~ 459 (464)
T COG1109 412 GVKVEL------EDGGRVLVRPSGTEPLIRVYVEAKDEELAEELAEEIAE-LVRE 459 (464)
T ss_pred eEEEEe------CCCcEEEEEeCCCceEEEEEEEECCHHHHHHHHHHHHH-HHHh
Confidence 999999 56655 99999999999999999999999999999988 7765
No 15
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=1.1e-46 Score=378.68 Aligned_cols=281 Identities=13% Similarity=0.111 Sum_probs=220.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHH-------HhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhC----CC
Q 021442 1 MFPNHIPNPEDKTAMALTRAAV-------LENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH----PG 69 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v-------~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~----~~ 69 (312)
+||+++|||+. ..+.++...+ .+.+||+|||+||||||++++ ++|+++.++.++++++.+++... ++
T Consensus 263 ~Fp~~~PnP~~-~~l~~lv~~~~~~~~~~~~~~aDlgiA~DgDaDR~~vv-~~g~~i~~d~~l~ll~~~~l~~~~~~~~g 340 (579)
T PLN02307 263 DFGGGHPDPNL-TYAKELVKRMGLGKTSYGDEPPEFGAASDGDGDRNMIL-GKRFFVTPSDSVAIIAANAQEAIPYFSGG 340 (579)
T ss_pred CCCCCCCCCCH-HHHHHHHHHhhhccccccccCCCEEEEeCCCCCeEEEE-ecCcEEcCChHHHHHHHHHHHhhhhhhcC
Confidence 59999999974 5555555444 344699999999999999999 78999999999999999987652 23
Q ss_pred C-EEEEcccCCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHH
Q 021442 70 T-TIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQ 148 (312)
Q Consensus 70 ~-~Vv~~v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~e 148 (312)
. .||.|++||.+++++|+++|+++++|+|||+||.++|.+.+ ++||||||||++ +++.+++||+++++++ +|
T Consensus 341 ~~~VV~tv~sS~~l~~ia~~~G~~~~~t~vGfk~I~~~m~e~~-----~~~GgEeSgG~~-~~~~~dkDGi~aalll-le 413 (579)
T PLN02307 341 LKGVARSMPTSAALDVVAKKLNLPFFEVPTGWKFFGNLMDAGK-----LSICGEESFGTG-SDHIREKDGIWAVLAW-LS 413 (579)
T ss_pred CcEEEEeChhhHHHHHHHHHcCCeEEEcCchHHHHHHHHHhCC-----cEEEEcccCCCC-CCCCCCCcHHHHHHHH-HH
Confidence 2 69999999999999999999999999999999999999865 599999999995 9999999999999965 59
Q ss_pred HHHHHhcCC----CC--CHHHHHHHhhhhhc-ceeEEEEeecCchhhHhHHHHHHHHHHhh----hhhcccCCccccccC
Q 021442 149 MVRMKLEGS----DE--GIGSLIKDLEEPLE-SIELRMNIISEPRYAKAKGSEAIEEFRKY----IEEGRLQGWELDSCG 217 (312)
Q Consensus 149 ll~~~~~~~----~~--~lsell~~lp~~~~-~~~~~i~~~~~~~~~~~~~~~~m~~l~~~----~~~~~~~~~~~~~~~ 217 (312)
|++.. ..+ ++ ||.+++++|+..|. +.+.++++.... .+++.++|.+|++. .....+.+.+++.+.
T Consensus 414 l~a~~-~~~~~~~~~~~tl~~~l~el~~~~G~~~~~~~~~~~~~---~~~~~~~~~~lr~~~~~~~~~~~~~~~~v~~~~ 489 (579)
T PLN02307 414 ILAHK-NKDVLPGGKLVTVEDIVREHWATYGRNFYSRYDYENVD---SEAANKMMDHLRDLVNKSKKGIKYGVYTLAFAD 489 (579)
T ss_pred HHHHh-CCCcccccCcCCHHHHHHHHHHHhCCCeeeecceecCC---HHHHHHHHHHHhcccccccCCCEecceEEEEEe
Confidence 99873 222 33 78999999998884 345566654332 11234677777763 222345566666666
Q ss_pred ccccccccccCCCCCCcccCcCceEEEEeecccCCceEEEEecCCCC---ccEEEEEEe-CCh--hhHHHHHHHHHHHHh
Q 021442 218 DCWVSEGCLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHN---PNIAVNVQS-MVP--GGCRSITKSLRDKFL 291 (312)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTE---P~iriy~Ea-~~~--~~a~~l~~~~~~~~~ 291 (312)
||+++ +.. +..+...||+|+.| ++++|+++|||||| |+||+|+|+ .++ +++.++++..+. ++
T Consensus 490 d~~~~---~~~---~~~~~~~dglk~~~-----~dg~wi~~RpSGTE~~~PkiK~Y~e~~~~~~~~~~~~~~~~~~~-~~ 557 (579)
T PLN02307 490 DFEYT---DPV---DGSVSSKQGIRFLF-----TDGSRIIFRLSGTGSAGATIRLYIEQYEKDPSKHGRDAQEALKP-LI 557 (579)
T ss_pred eceee---cCC---CCCCCccCeEEEEE-----cCCeEEEEEcCCCCCCCCeEEEEEEEecCCHHHHHHHHHHHHHH-HH
Confidence 66631 111 12455689999999 56679999999999 999999999 677 899999998888 66
Q ss_pred hhcccccccchhhHHHHhhc
Q 021442 292 LASGMDKVLDISQIEKYAES 311 (312)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~ 311 (312)
.. .|.++.|++|+-.
T Consensus 558 ~~-----~~~~~~~~~~~~~ 572 (579)
T PLN02307 558 DV-----ALKLSKLKEFTGR 572 (579)
T ss_pred HH-----HHHHhChhHHhCC
Confidence 53 5999999999864
No 16
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=100.00 E-value=9.4e-47 Score=378.61 Aligned_cols=257 Identities=16% Similarity=0.189 Sum_probs=202.6
Q ss_pred CCCCCCCCCC--------ChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCC---C
Q 021442 1 MFPNHIPNPE--------DKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP---G 69 (312)
Q Consensus 1 ~Fp~~~P~P~--------~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~---~ 69 (312)
+||+++|+|+ .++++..+.+ ++.+||+||++||||||++++|++| ++++|++++|+++++++.++ +
T Consensus 264 ~f~~~~pd~~~~~~~~~~~~e~l~~l~~--~~~~aDlGia~DgDaDR~~vvd~~g-~i~gd~~~aLla~~ll~~~~~~~~ 340 (543)
T TIGR01132 264 TFRFMTLDKDGKIRMDCSSPYAMAGLLA--LRDKYDLAFGNDPDYDRHGIVTPAG-LMNPNHYLAVAINYLFQHRPQWGG 340 (543)
T ss_pred CCCCCCCCcccccCCCCCCHHHHHHHhh--cccCCCEEEEeCCCCCCeeEEecCc-eeCHHHHHHHHHHHHHHhCcccCC
Confidence 4787776432 2466666655 5889999999999999999999995 69999999999999998753 3
Q ss_pred -CEEEEcccCCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCC-----CcccCCHHHHHH
Q 021442 70 -TTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVV 143 (312)
Q Consensus 70 -~~Vv~~v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~-----~~~~~Dgi~aal 143 (312)
..|+.|++||++++++|+++|+++++|||||+|++++|.+.+ ++||||+|||++|+. +.+++|||++++
T Consensus 341 ~~~Vv~tv~sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~~-----~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l 415 (543)
T TIGR01132 341 DVAVGKTLVSSAMIDRVVADLGRQLVEVPVGFKWFVDGLFDGS-----FGFGGEESAGASFLRFDGTPWSTDKDGIIMCL 415 (543)
T ss_pred CceEEEEeccHHHHHHHHHHcCCceeecCccHHHHHHHHhcCC-----eEEEEeccCceEecccCCCCcccCcHHHHHHH
Confidence 368889999999999999999999999999999999999865 589999999999965 789999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhhhhhcce-eEEEEeecCchhhHhHHHHHHHHHHhhhh-hcccCCccccccCcccc
Q 021442 144 KIIIQMVRMKLEGSDEGIGSLIKDLEEPLESI-ELRMNIISEPRYAKAKGSEAIEEFRKYIE-EGRLQGWELDSCGDCWV 221 (312)
Q Consensus 144 ~ll~ell~~~~~~~~~~lsell~~lp~~~~~~-~~~i~~~~~~~~~~~~~~~~m~~l~~~~~-~~~~~~~~~~~~~~~~~ 221 (312)
+++ |+++. ++++|+++++++|..|... ..+++++|.+ .. ++ .|++|.+... ...+++.++..+ +
T Consensus 416 ~il-e~la~----~~~~L~~ll~~lp~~~~~~~~~~~~~~~~~--~~--k~-~~~~l~~~~~~~~~~~~~~~~~~--~-- 481 (543)
T TIGR01132 416 LAA-EITAV----TGKNPQQHYNELAAKFGAPSYNRIQAPATS--AQ--KA-RLKKLSPEMVSATTLAGDPITAR--L-- 481 (543)
T ss_pred HHH-HHHHH----hCCCHHHHHHHHHHHhCCceEEEEecCChH--HH--HH-HHHHHhccCCChHHhCCceeEEE--E--
Confidence 765 99997 5999999999999877433 3355555432 21 22 3477764221 123444433211 0
Q ss_pred ccccccCCCCCCcccCcCceEEEEeecccCCceEEEEecCCCCccEEEEEEe-CChhhHHHHHHHHHHHHhhh
Q 021442 222 SEGCLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQS-MVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 222 ~~~~~~~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea-~~~~~a~~l~~~~~~~~~~~ 293 (312)
. .+ ...++++||+|+.| ++||++||||||||+||||+|| +|+++++++++++.+ +|+.
T Consensus 482 ~-----~~--~~~~~~~DGvki~~------~~gWvliRpSgTEP~irvy~Ea~~~~~~~~~l~~~~~~-~v~~ 540 (543)
T TIGR01132 482 T-----AA--PGNGAAIGGLKVTT------DNGWFAARPSGTEDVYKIYCESFKGEEHLKQIEKEAVE-IVSE 540 (543)
T ss_pred e-----cc--CCCCccCCeEEEEE------cCcEEEEecCCCCceEEEEEEecCCHHHHHHHHHHHHH-HHHH
Confidence 0 00 12355799999999 7889999999999999999999 699999999999999 7754
No 17
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=4.8e-46 Score=369.58 Aligned_cols=232 Identities=19% Similarity=0.214 Sum_probs=191.3
Q ss_pred CCCC-CCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcC----CCcccChhHHHHHHHHHHHHhC-------C
Q 021442 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDN----KGNPINGDKLIALMSAIVLKEH-------P 68 (312)
Q Consensus 1 ~Fp~-~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~----~G~~l~~d~~~~Ll~~~ll~~~-------~ 68 (312)
+||+ ++|||+.+++|+++.++|++.+||+|+++||||||++++|+ +|+++++|++++|+++++++.+ +
T Consensus 226 ~F~~~~~p~p~~~~~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~~~~~~g~~~~~d~l~aL~a~~ll~~~~~~~~~~~ 305 (487)
T cd05799 226 DFPTVKFPNPEEPGALDLAIELAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQRKEKGKLPK 305 (487)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCCeEEEEEEcCCCCEEEECHHHHHHHHHHHHHHhHhhccCCCC
Confidence 5897 48999989999999999999999999999999999999995 4899999999999999998875 4
Q ss_pred CCEEEEcccCCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHH
Q 021442 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQ 148 (312)
Q Consensus 69 ~~~Vv~~v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~e 148 (312)
+..||+|++||++++++|+++|+++++||||++|++++|.+.+..+.+++||||+|||++|+++.+++||++++++++ |
T Consensus 306 ~~~vV~~v~sS~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~~~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ll-e 384 (487)
T cd05799 306 NPVIVKTIVSSELLRKIAKKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLA-E 384 (487)
T ss_pred CcEEEEeehhHHHHHHHHHHcCCeEEECCCCchHHHHHHHHHhccCceEEEEEeccceeeeCCCCCCchHHHHHHHHH-H
Confidence 447999999999999999999999999999999999999976433445799999999999999999999999999765 9
Q ss_pred HHHHHhcCCCCCHHHHHHHhhhhhcce-e--EEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCcccccccc
Q 021442 149 MVRMKLEGSDEGIGSLIKDLEEPLESI-E--LRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGC 225 (312)
Q Consensus 149 ll~~~~~~~~~~lsell~~lp~~~~~~-~--~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (312)
|++.+ +.++++|+++++++|+.|..+ . ..++|+.+. +.. +.+++|++|. +
T Consensus 385 ~la~~-~~~~~~Ls~l~~~l~~~y~~~~~~~~~i~~~~~~-~~~-~~~~v~~~l~----~-------------------- 437 (487)
T cd05799 385 MAAYL-KAQGKTLLDRLDELYEKYGYYKEKTISITFEGKE-GPE-KIKAIMDRLR----N-------------------- 437 (487)
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHhCceEEeeeeEEEeCCC-CHH-HHHHHHHHHh----c--------------------
Confidence 99851 115899999999999876332 2 234553211 211 1134554442 1
Q ss_pred ccCCCCCCcccCcCceEEEEeecccCCceEEEEecCCCCccEEEEEEeCCh
Q 021442 226 LVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVP 276 (312)
Q Consensus 226 ~~~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~ 276 (312)
. .||+|+.| ++++|++||||||||++|||+||.+.
T Consensus 438 --------~---~DGvki~~-----~dg~WvliRpS~teP~~riy~Ea~~~ 472 (487)
T cd05799 438 --------N---PNVLTFYL-----EDGSRVTVRPSGTEPKIKFYIEVVGK 472 (487)
T ss_pred --------c---CCEEEEEE-----cCCEEEEEEcCCCCceEEEEEEeecc
Confidence 0 19999999 34479999999999999999999883
No 18
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=5.4e-46 Score=365.16 Aligned_cols=225 Identities=24% Similarity=0.274 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCC-CCEEEEcccCCHHHHHHHHHcC
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP-GTTIVTDARTSMALTKFITDRG 90 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~-~~~Vv~~v~sS~~l~~ia~~~G 90 (312)
+.+++++.+.|++.+||+|+++||||||++++|++|+++++|++++|++.++++.++ ...||.|++||.+++++|+++|
T Consensus 216 ~~~l~~l~~~v~~~~adlGia~D~DgDRl~~vd~~G~~i~~d~l~~l~~~~ll~~~~~~~~vv~~v~ss~~~~~~a~~~g 295 (443)
T PRK10887 216 ATDPEALQAAVLAEKADLGIAFDGDGDRVIMVDHLGNLVDGDQLLYIIARDRLRRGQLRGGVVGTLMSNMGLELALKQLG 295 (443)
T ss_pred CCCHHHHHHHHHhcCCCeeeEECCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhCCCCCcEEEEeccchHHHHHHHHcC
Confidence 468999999999999999999999999999999999999999999999999998764 3479999999999999999999
Q ss_pred CcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhhh
Q 021442 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEE 170 (312)
Q Consensus 91 ~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp~ 170 (312)
+++++||||++|++++|.+.+ ++||||+|||++|++|++++|||+++++++ |+++. .+++|+++++++|.
T Consensus 296 ~~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~Ls~l~~~~~~ 365 (443)
T PRK10887 296 IPFVRAKVGDRYVLEKLQEKG-----WRLGGENSGHILCLDKTTTGDGIVAALQVL-AAMVR----SGMSLADLCSGMKL 365 (443)
T ss_pred CcEEEcCCchHHHHHHHHhcC-----cEEEEecccceeccCccccCcHHHHHHHHH-HHHHH----hCCCHHHHHhhccc
Confidence 999999999999999998876 489999999999999999999999999776 99987 58999999999996
Q ss_pred hhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeeccc
Q 021442 171 PLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEH 250 (312)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~~ 250 (312)
+|. ...+++|+....+. .+++.|++..+.. + ++ +
T Consensus 366 ~~~-~~~~v~~~~~~~~~--~~~~~~~~~~~~~-----------------------------------~-~~--~----- 399 (443)
T PRK10887 366 FPQ-VLINVRFKPGADDP--LESEAVKAALAEV-----------------------------------E-AE--L----- 399 (443)
T ss_pred ccc-eEEEEEeccccccc--cchHHHHHHHHHH-----------------------------------H-HH--h-----
Confidence 543 33566666321111 1234444432211 0 01 2
Q ss_pred CCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 251 GQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 251 ~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
+++||+|||||||||++|||+||+|++.++++++++.+ .|+.
T Consensus 400 ~~dgWvLiRpS~tEP~iri~~Ea~s~e~a~~l~~~~~~-~v~~ 441 (443)
T PRK10887 400 GGRGRVLLRKSGTEPLIRVMVEGEDEAQVTALAERIAD-AVKA 441 (443)
T ss_pred CCCeEEEEecCCCCeEEEEEEeeCCHHHHHHHHHHHHH-HHHh
Confidence 26799999999999999999999999999999999999 6653
No 19
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00 E-value=5.4e-46 Score=366.62 Aligned_cols=245 Identities=19% Similarity=0.145 Sum_probs=198.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCH
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~ 80 (312)
+|++++|+|..+++++.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++. ...||.|++||.
T Consensus 200 ~~~~~~~~~~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~i~~d~l~~l~~~~~~----~~~Vv~~v~ss~ 275 (459)
T cd03088 200 TFIPVDTEAVRPEDRALAAAWAAEHGLDAIVSTDGDGDRPLVADETGEWLRGDILGLLTARFLG----ADTVVTPVSSNS 275 (459)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCceeECCCCCEECchHHHHHHHHHhC----CCEEEEccCCcH
Confidence 3665667776568999999999999999999999999999999999999999999999998873 247999999999
Q ss_pred HHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCC----------CcccCCHHHHHHHHHHHHH
Q 021442 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE----------NYFLDDGAYMVVKIIIQMV 150 (312)
Q Consensus 81 ~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~----------~~~~~Dgi~aal~ll~ell 150 (312)
.+++++. ++++++|||||+|++++|++.+..|..+++|+|+|||++|++ |.+++|||+++++++ +++
T Consensus 276 ~i~~~~~--~~~~~~t~vG~~~i~~~m~~~~~~~~~~~~g~E~sg~~~~~~~~~~~~~~~~~~~~~Dgi~a~l~il-e~l 352 (459)
T cd03088 276 AIELSGF--FKRVVRTRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVL-AAA 352 (459)
T ss_pred HHHHcCC--ceeEEECCCccHHHHHHHHHHHhcCCceEEEEecccceeccchhhccccccccCCCccHHHHHHHHH-HHH
Confidence 9988775 589999999999999999875433334689999999999996 567999999999766 998
Q ss_pred HHHhcCCCCCHHHHHHHhhhhhcceeEEEE-eecCchhhHhHHHHHHHHHHhhhhhc-c-cCCccccccCcccccccccc
Q 021442 151 RMKLEGSDEGIGSLIKDLEEPLESIELRMN-IISEPRYAKAKGSEAIEEFRKYIEEG-R-LQGWELDSCGDCWVSEGCLV 227 (312)
Q Consensus 151 ~~~~~~~~~~lsell~~lp~~~~~~~~~i~-~~~~~~~~~~~~~~~m~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 227 (312)
+. ++++|+++++++|++|... .+++ |+++ . ++++|++|.+..... . +...
T Consensus 353 ~~----~~~~Ls~ll~~l~~~~~~~-~~i~~~~~~---~---~~~~m~~l~~~~~~~~~~~~~~---------------- 405 (459)
T cd03088 353 KE----AGIPLSELVASLPARFTAS-DRLQNFPTE---K---SQALIARLSADPEARAAFFFAL---------------- 405 (459)
T ss_pred Hh----cCCCHHHHHHHHhhcceEh-hccccCCHH---H---HHHHHHHHHhChHhhhhhhhcc----------------
Confidence 87 6999999999999887643 3444 4421 1 457999997643210 0 0000
Q ss_pred CCCCCCcccCcCceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHH
Q 021442 228 DSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKS 285 (312)
Q Consensus 228 ~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~ 285 (312)
-....+++++||+|+.| ++++|++||||||||++|||+|++|+++++++++.
T Consensus 406 -~~~~~~v~~~DGvk~~~-----~dg~W~liRpSgTEP~~riy~Ea~~~~~~~~l~~~ 457 (459)
T cd03088 406 -GGEVASIDTTDGLRMTF-----ANGDIVHLRPSGNAPELRCYVEADSEERARELLAR 457 (459)
T ss_pred -CCcccccCCCCeEEEEE-----CCCCEEEEECCCCCceEEEEEecCCHHHHHHHHHh
Confidence 00013577899999998 45579999999999999999999999999988764
No 20
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.7e-46 Score=367.83 Aligned_cols=223 Identities=23% Similarity=0.286 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhC--CCCEEEEcccCCHHHHHHHHHc
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~--~~~~Vv~~v~sS~~l~~ia~~~ 89 (312)
+++++.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||..++++|+++
T Consensus 221 ~~~l~~l~~~v~~~~adlGia~DgDgDR~~ivd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vV~~v~ss~~i~~~a~~~ 300 (448)
T PRK14315 221 STHPEALAKKVREVRADIGIALDGDADRVIIVDEKGHVVDGDQLMALIAESWAEDGRLRGGGIVATVMSNLGLERFLADR 300 (448)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCceEEEEcCCCcEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCChHHHHHHHHc
Confidence 35789999999999999999999999999999999999999999999999999865 4558999999999999999999
Q ss_pred CCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Q 021442 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (312)
Q Consensus 90 G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp 169 (312)
|+++++||||++|++++|++.+ ++||||+|||++|++|.+++|||+++++++ ++++. ++++|+++++++|
T Consensus 301 g~~v~~t~vG~~~i~~~m~~~~-----~~~ggE~sg~~~f~~~~~~~Dgi~a~l~ll-e~la~----~~~~L~~l~~~~~ 370 (448)
T PRK14315 301 GLTLERTAVGDRYVVEHMREGG-----FNLGGEQSGHIVLSDYATTGDGLVAALQVL-AVVVR----SGRPASEVCRRFE 370 (448)
T ss_pred CCeEEEeCChHHHHHHHHHhCC-----CceeecccccEeecccCCCCcHHHHHHHHH-HHHHH----hCCCHHHHhhhcC
Confidence 9999999999999999999866 489999999999999999999999999776 99987 5899999999999
Q ss_pred hhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecc
Q 021442 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (312)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~ 249 (312)
.++... .+++|+.. .++. .+.. ...+||+++.+
T Consensus 371 ~~~~~~-~~~~~~~~---------~~~~--~~~~-------------------------------~~~~~~~~~~~---- 403 (448)
T PRK14315 371 PVPQLL-KNVRYSGG---------KPLE--DASV-------------------------------KSAIADAEARL---- 403 (448)
T ss_pred cCCeee-eEEecCCc---------ccCC--CHHH-------------------------------HHHHHHHHHHh----
Confidence 654322 45555421 1110 0111 11345666554
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 250 ~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
+++||+|||||||||++|||+||+|++.++++++++.+ .+.+
T Consensus 404 -~~~gWvLiRpS~teP~iri~~Ea~s~~~~~~l~~~~~~-~i~~ 445 (448)
T PRK14315 404 -NGSGRLLIRPSGTEPLIRVMAEGDDRALVEEVVDEIVD-AVSA 445 (448)
T ss_pred -cCCcEEEEecCCCCcEEEEEEeeCCHHHHHHHHHHHHH-HHHH
Confidence 35799999999999999999999999999999999999 6653
No 21
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=2.8e-45 Score=350.57 Aligned_cols=204 Identities=26% Similarity=0.337 Sum_probs=185.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHh-CCCCEEEEcccCC
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE-HPGTTIVTDARTS 79 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~-~~~~~Vv~~v~sS 79 (312)
.||+++|||..+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++. +++..||.|++||
T Consensus 149 ~F~~~~p~p~~~~~l~~l~~~v~~~~adlG~a~DgDgDRl~~vd~~G~~l~~d~~~al~~~~l~~~~~~~~~vv~~v~ss 228 (355)
T cd03084 149 NFGNINPDPGSETNLKQLLAVVKAEKADFGVAFDGDADRLIVVDENGGFLDGDELLALLAVELFLTFNPRGGVVKTVVSS 228 (355)
T ss_pred CCCCCCCCCCchhhHHHHHHHHHhcCCCEEEEEcCCCceeEEECCCCceeCHhHHHHHHHHHHHHhcCCCCCEEEEccch
Confidence 489999999988999999999999999999999999999999999999999999999999999865 4556799999999
Q ss_pred HHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCC
Q 021442 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (312)
Q Consensus 80 ~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~ 159 (312)
++++++++++|+++++||||++|++++|.+.+ +++|||+|||++|+++.+++|||+++++++ +|++. .++
T Consensus 229 ~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~-----~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~----~~~ 298 (355)
T cd03084 229 GALDKVAKKLGIKVIRTKTGFKWVGEAMQEGD-----VVLGGEESGGVIFPEFHPGRDGISAALLLL-EILAN----LGK 298 (355)
T ss_pred HHHHHHHHHcCCcEEEecCcHHHHHHHHHhcC-----ceEEecCcCCEEECCcCCCCCHHHHHHHHH-HHHHH----hCC
Confidence 99999999999999999999999999999866 489999999999999999999999999876 99987 589
Q ss_pred CHHHHHHHhhhhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcC
Q 021442 160 GIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDAR 239 (312)
Q Consensus 160 ~lsell~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 239 (312)
+|+++++++|.+|.. + ..
T Consensus 299 ~Ls~l~~~~p~~~~~-----------------------------~----------------------------~~----- 316 (355)
T cd03084 299 SLSELFSELPRYYYI-----------------------------R----------------------------LK----- 316 (355)
T ss_pred CHHHHHHHhhHhccc-----------------------------c----------------------------cc-----
Confidence 999999999854310 0 00
Q ss_pred ceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHH
Q 021442 240 MYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRD 288 (312)
Q Consensus 240 Glki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~ 288 (312)
. . ||+|||||||||++|||+||.|+++++++++.+.+
T Consensus 317 -----v------~-gW~lirps~tep~~ri~~Ea~~~e~a~~l~~~~~~ 353 (355)
T cd03084 317 -----V------R-GWVLVRASGTEPAIRIYAEADTQEDVEQIKKEARE 353 (355)
T ss_pred -----c------c-eEEEEecCCCCcEEEEEEeeCCHHHHHHHHHHHHh
Confidence 1 1 79999999999999999999999999999998877
No 22
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=4.1e-45 Score=359.10 Aligned_cols=220 Identities=18% Similarity=0.227 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhC--CCCEEEEcccCCHHHHHHHHHcC
Q 021442 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDRG 90 (312)
Q Consensus 13 ~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~--~~~~Vv~~v~sS~~l~~ia~~~G 90 (312)
.+++.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||+.++++++++|
T Consensus 221 ~~~e~l~~~v~~~~adlGia~DgDgDR~~vvd~~G~~l~~d~~~~l~a~~ll~~~~~~~~~VV~~v~ss~~l~~ia~~~g 300 (446)
T PRK14324 221 LHPENLAQEVKRYRADIGFAFDGDADRLVVVDEKGEIVHGDKLLGVLAVYLKEKGALKSQAIVATVMSNLALEEYLKKHG 300 (446)
T ss_pred CCHHHHHHHHHhCCCCEEEEECCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCChHHHHHHHHcC
Confidence 4677789999999999999999999999999999999999999999999999875 45589999999999999999999
Q ss_pred CcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhhh
Q 021442 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEE 170 (312)
Q Consensus 91 ~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp~ 170 (312)
+++++|||||+|++++|.+.++ +||||+|||++|++|.+++|||+++++++ ++++. ++++|+++++++|.
T Consensus 301 ~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~----~~~~ls~l~~~~~~ 370 (446)
T PRK14324 301 IELKRCNVGDKYVLECMKENGI-----NFGGEQSGHIIFSDYAKTGDGLVSALQVS-ALMLE----SKKKASEALNPFEL 370 (446)
T ss_pred CeEEEeCChHHHHHHHHHhcCC-----EEEEcCcccEEecCcCCCCcHHHHHHHHH-HHHHH----cCCCHHHHHHhhhh
Confidence 9999999999999999998774 89999999999999999999999999776 99987 69999999999986
Q ss_pred hhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeeccc
Q 021442 171 PLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEH 250 (312)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~~ 250 (312)
|++...++++.... .. ..++.+.+... .+|
T Consensus 371 -~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~--------------------------------~~~----------- 400 (446)
T PRK14324 371 -YPQLLVNLKVQEKK-PL-----EKIKGLKELLK--------------------------------ELE----------- 400 (446)
T ss_pred -cCceeEEEeeCCcc-cc-----ccCHHHHHHHH--------------------------------HHh-----------
Confidence 44444455554211 00 11122211110 001
Q ss_pred CCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 251 GQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 251 ~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
++++|+|||||||||+||+|+||+|++.++++++++.+ +|+.
T Consensus 401 ~dg~~~lvR~SgTEp~irv~~Ea~~~~~~~~l~~~~~~-~~~~ 442 (446)
T PRK14324 401 KLGIRHLIRYSGTENKLRILLEGKDEKLLEKKMQELVE-FFKK 442 (446)
T ss_pred cCCcEEEEecCCCCceEEEEEEECCHHHHHHHHHHHHH-HHHH
Confidence 14469999999999999999999999999999999999 7653
No 23
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=9.8e-45 Score=358.22 Aligned_cols=229 Identities=21% Similarity=0.274 Sum_probs=191.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhC--CCCEEEEcccCCHHHHH
Q 021442 7 PNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTK 84 (312)
Q Consensus 7 P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~--~~~~Vv~~v~sS~~l~~ 84 (312)
|+|. +++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|++++++++. ++..||.|++||..+++
T Consensus 229 ~~~~-~~~l~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~l~~l~a~~ll~~~~~~~~~VV~~v~ss~~~~~ 307 (465)
T PRK14317 229 VNCG-STHLEPLQAAVLEHGADMGFAFDGDADRVLAVDGQGRVVDGDHILYLWGSHLQEQNQLPDNLLVATVMSNLGFER 307 (465)
T ss_pred CCCc-hHhHHHHHHHHHhcCCCEEEEECCCCcEEEEECCCCCEEChhHHHHHHHHHHHHhcCCCCCeEEEeeecchHHHH
Confidence 4443 57899999999999999999999999999999999999999999999999999863 44589999999999999
Q ss_pred HHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 021442 85 FITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSL 164 (312)
Q Consensus 85 ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsel 164 (312)
+++++|+++++||||++|++++|.+.++ +||||+|||++|+++.+++|||+++++++ ++++. ++++|+++
T Consensus 308 ~~~~~g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~lsel 377 (465)
T PRK14317 308 AWQQRGGQLERTAVGDQHVHAAMLETGA-----MLGGEQSGHILCHHHGLSGDGLLTALHLA-TLVHQ----SGVSLAEL 377 (465)
T ss_pred HHHHcCCeEEEcCCchHHHHHHHHHcCc-----EeeccccceEEEeccccCCcHHHHHHHHH-HHHHH----hCCCHHHH
Confidence 9999999999999999999999998774 89999999999999999999999999775 99987 59999999
Q ss_pred HHHhhhhhcceeEEEEeecC---chhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCce
Q 021442 165 IKDLEEPLESIELRMNIISE---PRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMY 241 (312)
Q Consensus 165 l~~lp~~~~~~~~~i~~~~~---~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGl 241 (312)
+++++..|++...++.+... +++.+ ++.+++.+.+ . | +
T Consensus 378 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~-~-----------------------------------~-~ 418 (465)
T PRK14317 378 VDQSFQTYPQKLRNVRVEDRDRRLNWQE--CEPLQQAIAQ-A-----------------------------------E-A 418 (465)
T ss_pred HHhHHHhCCceEEEeeccccchhhhhhc--ChhHHHHHHH-H-----------------------------------H-H
Confidence 99975556544445554332 11111 2344443321 0 1 1
Q ss_pred EEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 242 RAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 242 ki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
+ + .++||+|||||||||+||||+||.|++.++++++++.+ .|+.
T Consensus 419 ~--~-----~~~gW~liRpS~TEP~irv~~Ea~~~~~~~~l~~~~~~-~v~~ 462 (465)
T PRK14317 419 A--M-----GDTGRVLVRASGTEPLIRVMVEAEDAELVNHWTNHLVA-VVQQ 462 (465)
T ss_pred h--h-----cCCceEEEecCCCCCEEEEEEEeCCHHHHHHHHHHHHH-HHHH
Confidence 1 2 25789999999999999999999999999999999999 7654
No 24
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.3e-45 Score=360.12 Aligned_cols=223 Identities=22% Similarity=0.300 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhC--CCCEEEEcccCCHHHHHHHHHcC
Q 021442 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDRG 90 (312)
Q Consensus 13 ~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~--~~~~Vv~~v~sS~~l~~ia~~~G 90 (312)
++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||..++++++++|
T Consensus 219 ~~~~~l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vv~~v~ss~~~~~~~~~~g 298 (448)
T PRK14316 219 THPEALQELVVEKGADLGLAFDGDADRLIAVDENGNIVDGDKIMFICGKYLKEKGRLKKNTIVTTVMSNLGFYKALEEEG 298 (448)
T ss_pred CCHHHHHHHHhhcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEeccCchHHHHHHHHcC
Confidence 4677889999999999999999999999999999999999999999999999875 44579999999999999999999
Q ss_pred CcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhhh
Q 021442 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEE 170 (312)
Q Consensus 91 ~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp~ 170 (312)
+++++||||++|++++|.+.++ +||||+|||++|++|.+++|||+++++++ ++++. .+++|+++++++|.
T Consensus 299 ~~v~~~~vG~~~i~~~m~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~il-e~l~~----~~~~ls~l~~~~~~ 368 (448)
T PRK14316 299 INSVKTKVGDRYVVEEMRKGGY-----NLGGEQSGHIIFLDYNTTGDGLLTALQLA-KVMKE----TGKKLSELAAEMKK 368 (448)
T ss_pred CeEEEeCChHHHHHHHHHhcCC-----eEEEcCcccEEecccCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhhhh
Confidence 9999999999999999998764 89999999999999999999999999876 99987 59999999999974
Q ss_pred hhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeeccc
Q 021442 171 PLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEH 250 (312)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~~ 250 (312)
|+....++++... +++|+. +.+. ..++++++.+
T Consensus 369 -~p~~~~~~~v~~k--------~~~~~~--~~~~-------------------------------~~i~~i~~~~----- 401 (448)
T PRK14316 369 -YPQKLVNVRVTDK--------KKAMEN--PEIK-------------------------------EIIEKVEEEM----- 401 (448)
T ss_pred -cCcceEEeEeCCc--------cccccC--HHHH-------------------------------HHHHHHHHHh-----
Confidence 3333345555321 234331 1111 1233444433
Q ss_pred CCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 251 GQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 251 ~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
+++||+|||||||||++|||+||.+++.++++++++.+ .|+.
T Consensus 402 ~~~gw~liRpS~TEP~irvy~Ea~~~e~~~~l~~~~~~-~i~~ 443 (448)
T PRK14316 402 AGNGRVLVRPSGTEPLVRVMAEAPTQEEVDKYVDRIAD-VVEA 443 (448)
T ss_pred CCCceEEEecCCCCcEEEEEEEeCCHHHHHHHHHHHHH-HHHH
Confidence 35799999999999999999999999999999999999 6654
No 25
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=3e-45 Score=359.07 Aligned_cols=218 Identities=24% Similarity=0.345 Sum_probs=183.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhC--CCCEEEEcccCCHHHHHHHHHc
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~--~~~~Vv~~v~sS~~l~~ia~~~ 89 (312)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||++++++++++
T Consensus 214 ~~~~~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~~l~a~~l~~~~~~~~~~vv~~v~ss~~~~~~~~~~ 293 (434)
T cd05802 214 STHPESLQKAVLENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGNTVVGTVMSNLGLEKALKEL 293 (434)
T ss_pred ccCHHHHHHHHHhcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEecCCcHHHHHHHHHc
Confidence 36789999999999999999999999999999999999999999999999999875 4458999999999999999999
Q ss_pred CCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Q 021442 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (312)
Q Consensus 90 G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp 169 (312)
|+++++||||++|++++|.+.++ ++|||+|||++|++|++++|||+++++++ ++++. ++++|+++++++|
T Consensus 294 g~~v~~~~~G~~~i~~~~~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~ll-e~la~----~~~~ls~l~~~l~ 363 (434)
T cd05802 294 GIKLVRTKVGDRYVLEEMLKHGA-----NLGGEQSGHIIFLDHSTTGDGLLTALQLL-AIMKR----SGKSLSELASDMK 363 (434)
T ss_pred CCeEEEEcChHHHHHHHHHhcCC-----EEEEecCCCEEecCcCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhcc
Confidence 99999999999999999998774 89999999999999999999999999876 99987 5999999999998
Q ss_pred hhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecc
Q 021442 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (312)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~ 249 (312)
.++. ...++++... +++|. .. .+. ..+||+++.+
T Consensus 364 ~~~~-~~~~v~~~~~--------~~~~~-~~-~~~-------------------------------~~~~~~~~~~---- 397 (434)
T cd05802 364 LYPQ-VLVNVRVKDK--------KALLE-NP-RVQ-------------------------------AAIAEAEKEL---- 397 (434)
T ss_pred ccCe-eeEEEEeCCc--------ccccc-CH-HHH-------------------------------HHHHHHHHhh----
Confidence 6543 3234443321 12221 11 111 1244555544
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHH
Q 021442 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSL 286 (312)
Q Consensus 250 ~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~ 286 (312)
+++||+|||||||||++|||+||+|+++++++++++
T Consensus 398 -~~~gW~liRpS~tep~irv~~Ea~s~~~~~~l~~~~ 433 (434)
T cd05802 398 -GGEGRVLVRPSGTEPLIRVMVEGEDEELVEKLAEEL 433 (434)
T ss_pred -CCCeEEEEecCCCCcEEEEEEeeCCHHHHHHHHHhh
Confidence 357999999999999999999999999999998864
No 26
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=100.00 E-value=9.8e-45 Score=356.29 Aligned_cols=224 Identities=25% Similarity=0.331 Sum_probs=186.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhC--CCCEEEEcccCCHHHHHHHHHc
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~--~~~~Vv~~v~sS~~l~~ia~~~ 89 (312)
++++..+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||.+++++|+++
T Consensus 217 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~al~a~~ll~~~~~~~~~vv~~v~ss~~l~~~a~~~ 296 (443)
T TIGR01455 217 STHLDALQKAVREHGADLGIAFDGDADRVLAVDANGRIVDGDQILYIIARALKESGELAGNTVVATVMSNLGLERALEKL 296 (443)
T ss_pred CCCHHHHHHHHhhcCCCEEEEEcCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhcCCCCCcEEEEccCCHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999999999999999873 3447999999999999999999
Q ss_pred CCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Q 021442 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (312)
Q Consensus 90 G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp 169 (312)
|+++++||||++|++++|.+.++ +||||+|||++|++|.+++|||+++++++ ++++. ++++|+++++++|
T Consensus 297 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~l~~l~~~~~ 366 (443)
T TIGR01455 297 GLTLIRTAVGDRYVLEEMRESGY-----NLGGEQSGHIILLDYSTTGDGIVSALQVL-TIMKK----SGSTLSELAAEFV 366 (443)
T ss_pred CCeEEEeCChHHHHHHHHHhcCC-----EEEEcCcceEEecCCCcCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhcc
Confidence 99999999999999999998764 89999999999999999999999999876 99987 5899999999999
Q ss_pred hhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecc
Q 021442 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (312)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~ 249 (312)
.+| ..+++|++..+ +. +...++.++..+.. .+ .+ .
T Consensus 367 ~~~---~~~~~~~~~~~--~~-~~~~~~~~~~~~~~--------------------------------~~-~~--~---- 401 (443)
T TIGR01455 367 PYP---QTLVNVRVADR--KL-AAAEAPAVKAAIED--------------------------------AE-AE--L---- 401 (443)
T ss_pred ccC---eeeeeEEeccc--cc-ccccCHHHHHHHHH--------------------------------HH-HH--h----
Confidence 654 24556665421 10 01111222111110 11 11 2
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhh
Q 021442 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLL 292 (312)
Q Consensus 250 ~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~ 292 (312)
+++||+|||||||||+||||+||+|+++++++++++.+ .|.
T Consensus 402 -~~~gW~LiRpS~teP~irv~~Ea~~~e~~~~l~~~~~~-~v~ 442 (443)
T TIGR01455 402 -GGTGRILLRPSGTEPLIRVMVEAADEELVQQLADTLAD-VVS 442 (443)
T ss_pred -CCCcEEEEecCCCCceEEEEEEECCHHHHHHHHHHHHH-HHh
Confidence 25799999999999999999999999999999999998 654
No 27
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=4.7e-45 Score=359.18 Aligned_cols=224 Identities=25% Similarity=0.314 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhC--CCCEEEEcccCCHHHHHHHHHc
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~--~~~~Vv~~v~sS~~l~~ia~~~ 89 (312)
+.+++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||+.++++++++
T Consensus 222 ~~~~~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~al~~~~ll~~~~~~~~~vv~~v~ss~~~~~ia~~~ 301 (450)
T PRK14314 222 SLHPEVIAKAVIEHGADLGIALDGDADRLIVVDEKGHIVDGDQIMAICATDLKKRGALPKNTLVATVMSNMGLEVAMKEL 301 (450)
T ss_pred CCCHHHHHHHHHhcCCCeEEEEcCCCceEEEECCCCcCcCHHHHHHHHHHHHHHhcCCCCCEEEEeccCChHHHHHHHHc
Confidence 35677889999999999999999999999999999999999999999999999873 4558999999999999999999
Q ss_pred CCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Q 021442 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (312)
Q Consensus 90 G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp 169 (312)
|+++++||||++|++++|.+.++ +||||+|||++|++|.+++|||+++++++ ++++. ++++|+++++++|
T Consensus 302 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~----~~~~Ls~l~~~~~ 371 (450)
T PRK14314 302 GGQVLRTPVGDRYVVEEMRRGGA-----NLGGEQSGHLIFLDHNTTGDGILSALQVL-RIMIE----SGKPLSELAGLLE 371 (450)
T ss_pred CCEEEEeCChHHHHHHHHHhcCC-----EEEEeCcccEEEeCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhhh
Confidence 99999999999999999998774 89999999999999999999999999776 99997 5999999999776
Q ss_pred hhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecc
Q 021442 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (312)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~ 249 (312)
.+ +.. +.+|++..+ .+ .+.+.++.+ .+||+++.+
T Consensus 372 ~~-p~~--~~~~~~~~k-~~---~~~~~~~~~-----------------------------------~i~~v~~~~---- 405 (450)
T PRK14314 372 PF-PQA--LINVRVKEK-IP---LETLPEVAK-----------------------------------AIKDVEEAL---- 405 (450)
T ss_pred hc-Ccc--ceEeEeCCc-Cc---cccHHHHHH-----------------------------------HHHHHHhhh----
Confidence 43 222 235555321 11 011122211 244555544
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 250 ~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
+++||+|||||+|||++|||+||+|++.++++++++.+ .|+.
T Consensus 406 -~~~gWvLiRpS~tEP~iri~~Ea~~~~~a~~l~~~~~~-~v~~ 447 (450)
T PRK14314 406 -GDSGRVLLRYSGTENLCRVMVEGEDKHQVDSLAKEIAD-VVEK 447 (450)
T ss_pred -CCCcEEEEecCCCCcEEEEEEeeCCHHHHHHHHHHHHH-HHHH
Confidence 35799999999999999999999999999999999999 6643
No 28
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=5.3e-45 Score=357.87 Aligned_cols=223 Identities=22% Similarity=0.259 Sum_probs=187.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCHHHHHHHHHcCC
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~~l~~ia~~~G~ 91 (312)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|++.+.. ++ .||.|++||.+++++++++|+
T Consensus 218 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vD~~G~~i~~d~~~~l~a~~~~---~~-~vV~~v~ss~~~~~~~~~~g~ 293 (440)
T PRK14323 218 STHPEALQRFVVEGGLDLGVAFDGDADRALFVDRRGRLFHGDHMLYLNALARG---EK-AVVGTVMSNMALEVKLREAGI 293 (440)
T ss_pred CCCHHHHHHHHhccCCCEEEEeCCCcceeEEECCCCcEeCHHHHHHHHHHHhc---CC-cEEEEeCCChHHHHHHHHcCC
Confidence 46899999999999999999999999999999999999999999999997642 33 799999999999999999999
Q ss_pred cEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhhhh
Q 021442 92 NHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEP 171 (312)
Q Consensus 92 ~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp~~ 171 (312)
++++||||+++++++|.+.++ +||||+|||++|+++.+++|||+++++++ ++++. ++++|+++++++|.+
T Consensus 294 ~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~~l-e~la~----~~~~ls~l~~~~~~~ 363 (440)
T PRK14323 294 AFHRTAVGDRYVHEKLHAKGL-----TLGGEQSGHVLFLDHAPTGDGVLTALLTL-AAMKA----LGTDLDAWYDALPMY 363 (440)
T ss_pred eEEEeCChHHHHHHHHHhcCC-----eEEEcCcccEEeCCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHHhhhhc
Confidence 999999999999999998774 89999999999999999999999999776 99987 599999999999965
Q ss_pred hcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecccC
Q 021442 172 LESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEHG 251 (312)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~~~ 251 (312)
+. ...+++|.. + +++|+.. .+.. + ++++.+.+ +
T Consensus 364 ~~-~~~~v~~~~--k------~~~~~~~--~~~~----~---------------------------i~~~~~~~-----~ 396 (440)
T PRK14323 364 PQ-TLLNVRVSD--K------AKVAADP--RVQE----A---------------------------VREAEARL-----G 396 (440)
T ss_pred Cc-eeEEEEeCC--c------cchhcCH--HHHH----H---------------------------HHHHHhhc-----C
Confidence 43 334566632 1 2344431 1111 0 01111223 3
Q ss_pred CceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhhccc
Q 021442 252 QYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLASGM 296 (312)
Q Consensus 252 ~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~~~~ 296 (312)
++||+|||||||||++|||+||.|++.++++++++.+ .|..+|+
T Consensus 397 ~~gW~LvRpS~TEP~irv~~Ea~s~~~~~~l~~~~~~-~v~~~~~ 440 (440)
T PRK14323 397 GRGRVNLRPSGTEPLVRVMVEGPDEAEIEEVARELAG-VVERLGQ 440 (440)
T ss_pred CCeEEEEecCCCccEeEEEEeeCCHHHHHHHHHHHHH-HHHHhcC
Confidence 5799999999999999999999999999999999999 8887763
No 29
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.6e-44 Score=350.91 Aligned_cols=217 Identities=20% Similarity=0.279 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhC--CCCEEEEcccCCHHHHHHHHHc
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~--~~~~Vv~~v~sS~~l~~ia~~~ 89 (312)
+++++.+.+.|+ ++|+||++||||||++++|++|+++++|++++|++.++++.+ ++..||.|++||++++++++++
T Consensus 210 ~~~l~~l~~~v~--~~dlGia~DgD~DR~~~vd~~G~~i~~d~~~~l~a~~l~~~~~~~~~~vV~~v~ss~~l~~~a~~~ 287 (429)
T PRK14322 210 ATHPRFLAEEMK--NGKVGFTFDGDGDRVIAVDEERNVVNGDRIIGILAVGLKEEGRLNSDTVVGTVMTNGGLEDFLKER 287 (429)
T ss_pred cCCHHHHHHHHH--hcCEEEEEcCCCceEEEECCCCcEEChHHHHHHHHHHHHHhcCCCCCeEEEeecCchHHHHHHHHc
Confidence 467888888887 469999999999999999999999999999999999999875 2238999999999999999999
Q ss_pred CCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Q 021442 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (312)
Q Consensus 90 G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp 169 (312)
|+++++||||++|++++|.+.++ +||||+|||++|+++++++|||+++++++ ++++. ++++|+++++++|
T Consensus 288 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~----~~~~Ls~l~~~lp 357 (429)
T PRK14322 288 GIKLLRTKVGDKYVLEKMLESGA-----NLGGERSGHIIILDRSTTGDGLITALELM-RVLKR----SGRNLSDFAKEIP 357 (429)
T ss_pred CCeEEEeCCccHHHHHHHhhcCc-----ceeccCCceEEecCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhch
Confidence 99999999999999999998764 89999999999999999999999999876 99987 5999999999999
Q ss_pred hhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecc
Q 021442 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (312)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~ 249 (312)
.++. ...+++|++.. .. +++.|+++.+.. .
T Consensus 358 ~~~~-~~~~v~~~~~~-~~---~~~~~~~~~~~~-----------------------------------------~---- 387 (429)
T PRK14322 358 DYPQ-ITKNVRRTERM-SL---ENENLRKIVEES-----------------------------------------T---- 387 (429)
T ss_pred hcCe-eeeEeeecccc-cc---chHHHHHHHHHh-----------------------------------------c----
Confidence 7644 33477776521 11 235565542211 0
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhh
Q 021442 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLL 292 (312)
Q Consensus 250 ~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~ 292 (312)
++++|+|||||||||++|||+||+|++.++++++++.+ .|+
T Consensus 388 -~~g~w~lvRpS~teP~irv~~Ea~~~~~a~~l~~~~~~-~l~ 428 (429)
T PRK14322 388 -SRGYRVVIRPSGTEPVVRITVEGKDREEIEKIVEEISR-VLE 428 (429)
T ss_pred -CCCcEEEEccCCCCcEEEEEEEECCHHHHHHHHHHHHH-HHh
Confidence 14579999999999999999999999999999999998 653
No 30
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.6e-44 Score=354.82 Aligned_cols=223 Identities=21% Similarity=0.254 Sum_probs=186.4
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCHHHHHHHHHcCC
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~~l~~ia~~~G~ 91 (312)
+++++.+.+.|++.+||+||++||||||++++|++|+++++|++++|++++++..++...||.++.||..++++++++|+
T Consensus 217 ~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~l~gd~~~al~a~~l~~~~~~~~vV~~~~~s~~~~~~~~~~g~ 296 (443)
T PRK14320 217 ATCVSNIKKAVKEQKADLGISLDGDADRIIIVDENGQEIDGDGILNILAQYSDICGGTNGIVGTQMTNMSYENHYRANKI 296 (443)
T ss_pred hHhHHHHHHHHHHcCCCEEEEECCCCceEEEECCCCcccCHHHHHHHHHHHHHHhCCCCCEEEecCCcHHHHHHHHHCCC
Confidence 57899999999999999999999999999999999999999999999999998754323689999999999999999999
Q ss_pred cEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhhhh
Q 021442 92 NHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEP 171 (312)
Q Consensus 92 ~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp~~ 171 (312)
++++||||+++++++|.+.++ +||||+|||++|++|.+++|||++++++| ++++. ++++|++++...+ +
T Consensus 297 ~~~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~~~ll-e~la~----~~~~ls~l~~~~~-~ 365 (443)
T PRK14320 297 PFIRSKVGDRYVLEDLVKYGY-----KIGGESSGHVINLNFGTTGDGLFTAIQLL-AIFSQ----ADKPVSEFKLQGE-L 365 (443)
T ss_pred CEEEecCchHHHHHHHHhCCC-----cEeecCCccEEccCCCCcCCHHHHHHHHH-HHHHH----cCCCHHHHhcccc-c
Confidence 999999999999999998774 89999999999999999999999999876 99997 5999999995422 2
Q ss_pred hcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecccC
Q 021442 172 LESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEHG 251 (312)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~~~ 251 (312)
| ++.+++|++..+ .+ + +.++++.+ .++++++.+ +
T Consensus 366 ~--~~~~~~~~~~~~-~~--~-~~~~~~~~-----------------------------------~~~~~~~~~-----~ 399 (443)
T PRK14320 366 M--QQTLINVPLTKK-VA--R-EDLQKVAS-----------------------------------DVNDVEKRL-----G 399 (443)
T ss_pred C--ceEEEEEEecCC-CC--c-chhHHHHH-----------------------------------HHHHHHhhh-----C
Confidence 2 334666665431 11 1 12222211 234555443 2
Q ss_pred CceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhh
Q 021442 252 QYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLL 292 (312)
Q Consensus 252 ~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~ 292 (312)
++||+|||||||||++|||+||+|+++++++++.+.+ .|+
T Consensus 400 ~~gW~LiRpS~teP~~rv~~Ea~s~e~a~~l~~~~~~-~i~ 439 (443)
T PRK14320 400 NRGRVLLRPSGTEPVLRVMVEADDKSLATNEAEYLVE-KVK 439 (443)
T ss_pred CCceEEEecCCCCceEEEEEecCCHHHHHHHHHHHHH-HHH
Confidence 5789999999999999999999999999999999998 554
No 31
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.4e-43 Score=346.87 Aligned_cols=223 Identities=22% Similarity=0.315 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCC--CCEEEEcccCCHHHHHHHHHc
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP--GTTIVTDARTSMALTKFITDR 89 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~--~~~Vv~~v~sS~~l~~ia~~~ 89 (312)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|++.++++.++ +..||.|++||+.++++++++
T Consensus 220 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~~l~a~~l~~~~~~~~~~vV~~v~ss~~~~~~~~~~ 299 (448)
T PRK14318 220 STHLEQLQAAVVAHGADLGLAHDGDADRCLAVDANGNVVDGDQIMAILALAMKEAGELASDTLVATVMSNLGLKLAMREA 299 (448)
T ss_pred CCCHHHHHHHHHhcCCCEEEEecCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhcCCCCCcEEEEecCchHHHHHHHHc
Confidence 478999999999999999999999999999999999999999999999988877642 347999999999999999999
Q ss_pred CCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Q 021442 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (312)
Q Consensus 90 G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp 169 (312)
|+++++||||++|++++|.+.+ ++||||+|||++|+++.+++|||+++++++ ++++. ++++|+++++++|
T Consensus 300 g~~v~~t~vG~~~i~~~~~~~~-----~~~ggE~sG~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~ls~l~~~~~ 369 (448)
T PRK14318 300 GITVVTTAVGDRYVLEEMRAGG-----YSLGGEQSGHIVMPDHATTGDGILTGLRLM-ARMAQ----TGKSLAELASAMT 369 (448)
T ss_pred CCcEEEeCChHHHHHHHHHhcC-----cEEEEcCcCcEEecCCCCCCCHHHHHHHHH-HHHHH----hCCCHHHHHhhhh
Confidence 9999999999999999999776 489999999999999999999999999776 88887 5999999999877
Q ss_pred hhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecc
Q 021442 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (312)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~ 249 (312)
.++. . ..+|++..+ +++|+. +.+.. +. ..+| +.+
T Consensus 370 ~~p~-~--~~~~~~~~~------~~~~~~--~~~~~----~i------------------------~~~~---~~~---- 403 (448)
T PRK14318 370 VLPQ-V--LINVPVVDK------TTAATA--PSVRA----AV------------------------ARAE---AEL---- 403 (448)
T ss_pred hcCc-c--eeeeecCCc------cchhcc--HHHHH----HH------------------------HHHH---hhh----
Confidence 5422 2 336665421 234431 11110 00 0111 122
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhh
Q 021442 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLL 292 (312)
Q Consensus 250 ~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~ 292 (312)
+++||+|||||||||++|||+||+|++.++++++++.+ .|+
T Consensus 404 -~~~gw~lvRpS~teP~irv~~Ea~~~~~a~~l~~~~~~-~v~ 444 (448)
T PRK14318 404 -GDTGRVLLRPSGTEPLVRVMVEAADEETARRVAGRLAD-VVA 444 (448)
T ss_pred -cCCeEEEEeeCCCCcEEEEEEeECCHHHHHHHHHHHHH-HHH
Confidence 25799999999999999999999999999999999999 554
No 32
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.7e-43 Score=343.91 Aligned_cols=216 Identities=20% Similarity=0.281 Sum_probs=180.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCC--CCEEEEcccCCHHHHHHHHHc
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP--GTTIVTDARTSMALTKFITDR 89 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~--~~~Vv~~v~sS~~l~~ia~~~ 89 (312)
+++++.+.+.+. ++|+|+++||||||++++|++|+++++|++++|++.++++.++ +..||.|++||.+++++++++
T Consensus 207 ~~~~~~l~~~v~--~~dlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vV~~v~ss~~~~~~~~~~ 284 (430)
T PRK14319 207 STHPENAKEKIT--NHKIAILHDGDGDRCIFLDEKGQEFHGDKIIGLTAKHLKKEGRLKNDVVVGTILSNMGLEVFLKNN 284 (430)
T ss_pred CCCHHHHHHHHH--hcCEEEEEcCCCceEEEECCCCCEeChhHHHHHHHHHHHHhCCCCCCeEEEeecCchHHHHHHHHC
Confidence 356777777774 5699999999999999999999999999999999999988642 346999999999999999999
Q ss_pred CCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Q 021442 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (312)
Q Consensus 90 G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp 169 (312)
|+++++||||++|++++|.+.++ +||||+|||++|++|++++|||+++++++ ++++. ++++|+++++++|
T Consensus 285 g~~v~~t~~G~~~i~~~m~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~ll-e~l~~----~~~~ls~l~~~~p 354 (430)
T PRK14319 285 GIKVVRTKVGDRYVLEEMLKLNA-----TLGGERSGHIIYLDKSTTGDGLITALETL-SVMVK----SGKKLSDLSNEIP 354 (430)
T ss_pred CCcEEEeCCchHHHHHHHHHcCC-----EEEEcccceEEEhhccCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhcc
Confidence 99999999999999999998774 89999999999999999999999999876 99987 5999999999999
Q ss_pred hhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecc
Q 021442 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEE 249 (312)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~ 249 (312)
.++. ...++.+... .++ +. +.... .+|| +
T Consensus 355 ~~~~-~~~~v~~k~~---------~~~-~~-~~~~~-------------------------------~~~~----~---- 383 (430)
T PRK14319 355 DYPQ-VMINVKVKNK---------EVY-KH-KEVFK-------------------------------LIKS----I---- 383 (430)
T ss_pred ccce-eeEEEEeCCc---------ccc-cc-HHHHH-------------------------------HHhC----C----
Confidence 6543 3345544321 011 10 11110 1333 3
Q ss_pred cCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 250 HGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 250 ~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
++||+|||||||||++|||+||+|++.++++++++.+ .|+.
T Consensus 384 --~~gw~LiRpS~TeP~irv~~Ea~~~~~a~~l~~~~~~-~v~~ 424 (430)
T PRK14319 384 --KDYRVIVRPSGTEPVVRVLVEGPDEEYITNIANDIAG-LIKE 424 (430)
T ss_pred --CCeEEEEecCCCccEEEEEEEeCCHHHHHHHHHHHHH-HHHH
Confidence 4789999999999999999999999999999999999 7765
No 33
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=2.6e-42 Score=342.93 Aligned_cols=235 Identities=13% Similarity=0.120 Sum_probs=193.1
Q ss_pred CCCCCCChHHHHHHHHHHHhcC----CcEEEEecCCCCeeEEEcCCC----cccChhHHHHHHHHHHHHhC----C-C--
Q 021442 5 HIPNPEDKTAMALTRAAVLENN----ADLGVVFDTDVDRSGVVDNKG----NPINGDKLIALMSAIVLKEH----P-G-- 69 (312)
Q Consensus 5 ~~P~P~~~~~l~~l~~~v~~~~----aDlGia~DgDgDR~~ivD~~G----~~l~~d~~~~Ll~~~ll~~~----~-~-- 69 (312)
++|+|..+++++.+++.+++.+ +|+|+++||||||++++|++| ++++||++++|+++++++.. + +
T Consensus 228 ~~n~~~ga~~l~~l~~~v~~~~~~~~adlgiA~DGDADRl~~vd~~g~~~~~~l~GD~i~aL~a~~ll~~~~~~~~~~~~ 307 (513)
T cd03086 228 LLNDGCGADYVKTKQKPPRGFELKPPGVRCCSFDGDADRLVYFYPDSSNKFHLLDGDKIATLFAKFIKELLKKAGEELKL 307 (513)
T ss_pred cCCCCcccccHHHHHHHHHhcCCCCCccEEEEECCCCCcEEEEEecCCCceEEECHHHHHHHHHHHHHHhccccCCCCCC
Confidence 4445555789999999999987 999999999999999999999 99999999999999998742 2 2
Q ss_pred -CEEEEcccCCHHHHHHHHH-cCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccC--ccCCCC-------------
Q 021442 70 -TTIVTDARTSMALTKFITD-RGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKEN------------- 132 (312)
Q Consensus 70 -~~Vv~~v~sS~~l~~ia~~-~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~--~~~~~~------------- 132 (312)
..||.|+.||..+.+++++ +|+++++|+||++|+.++|++.++ .+|||+||| ++|+++
T Consensus 308 ~~~VV~tv~sn~~~~~~l~~~~G~~~~~t~vG~k~v~~~m~e~~~-----~~ggE~sGHgtvif~~~~~~~~~~~~~~~~ 382 (513)
T cd03086 308 TIGVVQTAYANGASTKYLEDVLKVPVVCTPTGVKHLHHAAEEFDI-----GVYFEANGHGTVLFSESALAKIEENSSLSD 382 (513)
T ss_pred CcEEEEEeccchHHHHHHHHHcCceEEEeCCcHHHHHHHHHHhCc-----ceEEeccCCEEEEECchHHhhhhhhccccc
Confidence 2699999999999999999 999999999999999999998874 799999999 999998
Q ss_pred -----------------cccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhhhhhcceeEEEEeecCchhhHhHHHHH
Q 021442 133 -----------------YFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEA 195 (312)
Q Consensus 133 -----------------~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~ 195 (312)
++++|||+++++++ ++++. .+++++++++.++. |++...++++.... + .++
T Consensus 383 ~~~~~~~~l~~~~~~~n~~~gDgi~~al~vl-~~l~~----~~~~lsel~~~y~~-~p~~~~~v~v~~~~---~---~~~ 450 (513)
T cd03086 383 EQEKAAKTLLAFSRLINQTVGDAISDMLAVE-LILAA----LGWSPQDWDNLYTD-LPNRQLKVKVPDRS---V---IKT 450 (513)
T ss_pred hhhhHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHHHH----hCCCHHHHHhhchh-cCeeeeEEEecCcc---c---hhh
Confidence 66899999999765 88887 59999999998874 44455677765421 0 111
Q ss_pred HHHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecccCCceEEEEecCCCCccEEEEEEeCC
Q 021442 196 IEEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMV 275 (312)
Q Consensus 196 m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~ 275 (312)
.+.-...... ...+..+||+++.+ ++||++||||||||+||||+||++
T Consensus 451 ~~~e~~~~~p--------------------------~~l~~~iDG~~~~~------~~gr~lVRpSGTEp~iRvyaEA~t 498 (513)
T cd03086 451 TDAERRLVEP--------------------------KGLQDKIDAIVAKY------NNGRAFVRPSGTEDVVRVYAEAAT 498 (513)
T ss_pred hhHHhhcccc--------------------------HHHHHHHHHHHhcC------CCeeEEEecCCCCcEEEEEEEeCC
Confidence 1110000100 01245789999998 789999999999999999999999
Q ss_pred hhhHHHHHHHHHH
Q 021442 276 PGGCRSITKSLRD 288 (312)
Q Consensus 276 ~~~a~~l~~~~~~ 288 (312)
++.++++.+++.+
T Consensus 499 ~~~~~~l~~~i~~ 511 (513)
T cd03086 499 QEEADELANEVAE 511 (513)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
No 34
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-39 Score=314.08 Aligned_cols=268 Identities=26% Similarity=0.277 Sum_probs=209.1
Q ss_pred CCCCC-CCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcC---CCcccChhHHHHHHHHHHHHhCCCCEE----
Q 021442 1 MFPNH-IPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDN---KGNPINGDKLIALMSAIVLKEHPGTTI---- 72 (312)
Q Consensus 1 ~Fp~~-~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~---~G~~l~~d~~~~Ll~~~ll~~~~~~~V---- 72 (312)
+||++ .|||+++.+|+...+.+.+++||+++|+|||+||+++++. +|+.++||++++|++.+++++|++..+
T Consensus 287 ~FPt~~~PNPEek~aL~ls~~~a~~n~~dlvlanDpDaDR~avaek~~G~wr~fnGNElgALl~~~~le~~k~~~~~~~~ 366 (607)
T KOG1220|consen 287 MFPTVPFPNPEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLSWWVLEEHKGSTPVQDV 366 (607)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHhccCCcEEEecCCCcchhhheeccCCcceeccchHHHHHHHHHHHHhccCCCccchh
Confidence 59994 8999999999999999999999999999999999999977 899999999999999999999986433
Q ss_pred --EEcccCCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHH
Q 021442 73 --VTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMV 150 (312)
Q Consensus 73 --v~~v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell 150 (312)
..+.+||.++..+|+..|.+.++|.|||||+.+++.+.+.+|..++|++|+|+||+|+.+.+.+||++|++.++ +|+
T Consensus 367 ~ml~s~vSs~l~~~ia~~eGf~~~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~a-~~~ 445 (607)
T KOG1220|consen 367 SMLNSTVSSGLTRFIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKFA-SMA 445 (607)
T ss_pred hhhhhHHHHHHHHHHHHHhCceeeeccccchhhhHHHHHHHhcCceeeeeehhhcCcccccCccCcchHHHHHHHH-HHH
Confidence 56778999999999999999999999999999999999988999999999999999999999999999999765 888
Q ss_pred HHHhcCCCCCHHHHHHHhhhhhccee---EEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccC-ccccccccc
Q 021442 151 RMKLEGSDEGIGSLIKDLEEPLESIE---LRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCG-DCWVSEGCL 226 (312)
Q Consensus 151 ~~~~~~~~~~lsell~~lp~~~~~~~---~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 226 (312)
.+.....+.||++.+.++.+.|..+. ..+-|+++ .+.+.+.+.+++..-+..+++++| -+++...+|
T Consensus 446 ~~lr~~~~~sl~e~l~~l~e~yg~~~~~~~y~l~~~p---------e~~~~lf~~lR~~~~~~~yp~~ig~e~ev~~~rd 516 (607)
T KOG1220|consen 446 CRLRLAGNLSLSEVLEDLYERYGYHSTANSYRLCIDP---------EVIKALFDGLRNYDTGYIYPKKIGEEFEVVNVRD 516 (607)
T ss_pred HHHHHhcCCCHHHHHHHHHHhhCccceeeEEEEecCC---------chhHHHHHHHhhccccccccchhcccceeeeeee
Confidence 76434457899999999998885432 22333432 233444444433111223445555 556666677
Q ss_pred cCCCCCCcc--------cCcCceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHH
Q 021442 227 VDSNESPAA--------IDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRS 281 (312)
Q Consensus 227 ~~~~~~~~~--------~~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~ 281 (312)
++++++.+. ....+.+|.|.. .+++|+++|.|+|||++++|+|+-.+..+.+
T Consensus 517 lT~g~d~s~~d~ka~lpv~~ss~~vTf~~---~~~~~~tlR~SgtePkik~yie~c~~~~~~~ 576 (607)
T KOG1220|consen 517 LTTGYDVSSPDHKAVLPVSTSSQMVTFTF---NNGGVVTLRTSGTEPKIKLYIEACLPPDAKS 576 (607)
T ss_pred ceeeeecCCCCCccccccccccceeEEec---cCcEEEEEecCCCCcchhhhHHhhCCccccC
Confidence 766664321 112233444311 4578999999999999999999855444433
No 35
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=100.00 E-value=2.4e-37 Score=309.58 Aligned_cols=234 Identities=15% Similarity=0.177 Sum_probs=190.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCcEE------EEecCCCCeeEEEcC--CC----cccChhHHHHHHHHHHHHh----CC
Q 021442 5 HIPNPEDKTAMALTRAAVLENNADLG------VVFDTDVDRSGVVDN--KG----NPINGDKLIALMSAIVLKE----HP 68 (312)
Q Consensus 5 ~~P~P~~~~~l~~l~~~v~~~~aDlG------ia~DgDgDR~~ivD~--~G----~~l~~d~~~~Ll~~~ll~~----~~ 68 (312)
+.|+|..+++++.+++.++..++|+| +++||||||++++|+ +| ++|+||++++|++.++++. .+
T Consensus 287 ~lN~~cGad~vk~lq~~p~~~~ad~G~~~~~~~sfDGDADRlv~~d~~~~g~~~~~lldGDkI~~L~A~~l~~~l~~~~~ 366 (585)
T PTZ00302 287 LLNDKCGADYVQKTRKPPRAMKEWPGDEETRVASFDGDADRLVYFFPDKDGDDKWVLLDGDRIAILYAMLIKKLLGKIQL 366 (585)
T ss_pred CCCCCCccccHHHHHHHHHhcCCCcCccCCeeEEECCCCCeEEEEEecCCCCccceecCHHHHHHHHHHHHHHHhhhcCC
Confidence 56777778999999999999999999 999999999999988 78 9999999999999999763 22
Q ss_pred CC----EEEEcccCCHHHHHHHHH-cC-CcEEEeecchHHHHHHHhccCcCCcceeEEeecccC--ccCCC---------
Q 021442 69 GT----TIVTDARTSMALTKFITD-RG-GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKE--------- 131 (312)
Q Consensus 69 ~~----~Vv~~v~sS~~l~~ia~~-~G-~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~--~~~~~--------- 131 (312)
+. .||.|++||.++++++++ +| ++|++||||++|+.++|.+.+. .+|||.||| ++|++
T Consensus 367 ~~~l~igVVqTayaNgast~yl~~~lg~~~v~~t~tGvk~l~~~a~e~di-----~iyfEaNGHGTvif~~~~~~~~~~~ 441 (585)
T PTZ00302 367 KKKLDIGVVQTAYANGASTNYLNELLGRLRVYCAPTGVKNLHPKAHKYDI-----GIYFEANGHGTVLFNEKALAEWAKF 441 (585)
T ss_pred CCCccceEEEeccCCHHHHHHHHHhcCCeeEEEEeCchHHHHHHHHhcCC-----eEEEccCCCEEEEECcHHHhhhhhh
Confidence 32 699999999999999999 89 9999999999999999998874 799999999 99999
Q ss_pred ---------------------CcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhhhhhcceeEEEEeecCc----h
Q 021442 132 ---------------------NYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRMNIISEP----R 186 (312)
Q Consensus 132 ---------------------~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp~~~~~~~~~i~~~~~~----~ 186 (312)
+++.+|||+++++++ ++++. .+.++++|++.++ .+++.+.++.++... .
T Consensus 442 ~~~~~~~~~a~~~L~~~~~l~n~~vGDai~~~L~v~-~iL~~----~~~sl~e~~~~y~-dlP~~~~kv~v~~r~~i~t~ 515 (585)
T PTZ00302 442 LAKQNALNSACRQLEKFLRLFNQTIGDAISDLLAVE-LALAF----LGLSFQDWLNLYT-DLPSRQDKVTVKDRTLITNT 515 (585)
T ss_pred ccccchhhhHHHHHHHhHhhhcCCCccHHHHHHHHH-HHHHh----hCCCHHHHHhhcc-cCCceeeeeEeccCcccccc
Confidence 677899999999765 88877 5999999998654 345566677775421 0
Q ss_pred hhHhHHHHHH--HHHHhhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEEEEeecccCCceEEEEecCCCC
Q 021442 187 YAKAKGSEAI--EEFRKYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHN 264 (312)
Q Consensus 187 ~~~~~~~~~m--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTE 264 (312)
+.. ..++ ..|++ .+|++.+.+ .++||++|||||||
T Consensus 516 d~e---~~~v~P~~Lq~-----------------------------------~id~~~~~~-----~~~gr~lvRpSGTE 552 (585)
T PTZ00302 516 EDE---TRLLEPKGLQD-----------------------------------KIDAIVSKY-----DNAARAFIRPSGTE 552 (585)
T ss_pred hHh---hhcccHHHHHH-----------------------------------HHHHHHhhc-----cCCceEEEEcCCCC
Confidence 100 0111 22322 233333333 36799999999999
Q ss_pred ccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 265 PNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 265 P~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
|++|||+||++++.++++.+++.+ +|+.
T Consensus 553 p~vRvyaEA~t~~~a~~l~~~v~~-~v~~ 580 (585)
T PTZ00302 553 PVVRVYAEAPTLEQADELANEVKG-LVLR 580 (585)
T ss_pred cEEEEEEEECCHHHHHHHHHHHHH-HHHH
Confidence 999999999999999999999999 7754
No 36
>PLN02895 phosphoacetylglucosamine mutase
Probab=100.00 E-value=3.9e-37 Score=306.09 Aligned_cols=234 Identities=14% Similarity=0.189 Sum_probs=188.3
Q ss_pred CCCCCCChHHHHHHHHHHHhcCC---cEE---EEecCCCCeeEEEcCCC-----cccChhHHHHHHHHHHHHh----C--
Q 021442 5 HIPNPEDKTAMALTRAAVLENNA---DLG---VVFDTDVDRSGVVDNKG-----NPINGDKLIALMSAIVLKE----H-- 67 (312)
Q Consensus 5 ~~P~P~~~~~l~~l~~~v~~~~a---DlG---ia~DgDgDR~~ivD~~G-----~~l~~d~~~~Ll~~~ll~~----~-- 67 (312)
+.|+|..+++++.++ .+.+ ++ |+| +++||||||++++|++| ++++||++++|++.++.+. +
T Consensus 252 ~lN~~cGad~v~~lq-~vp~-~~~~~d~G~~~~sfDGDADRlv~~d~~g~~~~~~llDGDkI~~L~A~~l~~~l~~~~~~ 329 (562)
T PLN02895 252 VLNEGVGADFVQKEK-VPPT-GFASKDVGLRCASLDGDADRLVYFYVSSAGSKIDLLDGDKIASLFALFIKEQLRILNGN 329 (562)
T ss_pred CCCCCCccCcHHHHH-hhhc-cCCccCCCCcceEEcCCCCEEEEEEcCCCcccCeEeCHHHHHHHHHHHHHHHhhhcccc
Confidence 678888788999988 7777 88 999 99999999999999988 8999999999999999765 2
Q ss_pred ----C-----CCEEEEcccCCHHHHHHHHH-cCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccC--ccCCCCcc-
Q 021442 68 ----P-----GTTIVTDARTSMALTKFITD-RGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKENYF- 134 (312)
Q Consensus 68 ----~-----~~~Vv~~v~sS~~l~~ia~~-~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~--~~~~~~~~- 134 (312)
+ +..||.|++||..+++++++ +|++|++||||+||+.++|.+.+. .++||.||| ++|+++..
T Consensus 330 ~~~~~~~~~l~~gVVqTayaNgast~yl~~~lg~~v~~t~tGvk~l~~~a~e~di-----gvyfEaNGHGTviFs~~~~~ 404 (562)
T PLN02895 330 GNEKPEELLVRLGVVQTAYANGASTAYLKQVLGLEVVCTPTGVKYLHEAAAEFDI-----GVYFEANGHGTVLFSERFLD 404 (562)
T ss_pred cccccccccCCCeEEEeccccHHHHHHHHHhcCCeEEEEeCchHHHHHHHHhcCc-----eEEEccCCCeEEEEChHHHH
Confidence 2 34799999999999999999 999999999999999999999874 799999999 99998765
Q ss_pred -----------------------------------cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhhhhhcceeEEE
Q 021442 135 -----------------------------------LDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRM 179 (312)
Q Consensus 135 -----------------------------------~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp~~~~~~~~~i 179 (312)
++|||+++++++ ++++. .+.++++|++.++ .+++...++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~linq~vGDai~~~L~vl-~iL~~----~~~sl~e~~~~y~-dlP~~~~kv 478 (562)
T PLN02895 405 WLEAAAAELSSKAKGSEAHKAARRLLAVSRLINQAVGDALSGLLLVE-AILQY----RGWSLAEWNALYQ-DLPSRQLKV 478 (562)
T ss_pred HHhhhhhccccccccchhhHHHHHHHHHHHhhcCCccHHHHHHHHHH-HHHHH----hCCCHHHHHhhCc-cCCceeEee
Confidence 799999999765 88877 5999999999654 345566677
Q ss_pred EeecCchhhHhHHHHHHHHHH--hhhhhcccCCccccccCccccccccccCCCCCCcccCcCceEE-EEeecccCCceEE
Q 021442 180 NIISEPRYAKAKGSEAIEEFR--KYIEEGRLQGWELDSCGDCWVSEGCLVDSNESPAAIDARMYRA-KVTDEEHGQYGWI 256 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~m~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki-~~~~~~~~~~~wv 256 (312)
.++... -.+- ....+.+. +.+ +..+| .++ .+ ++||+
T Consensus 479 ~V~dr~-~~~t--~~~e~~~v~P~~L-------------------------------q~~ID-~~v~~~------~~Gr~ 517 (562)
T PLN02895 479 KVADRT-AITT--TDAETVVVRPAGL-------------------------------QDAID-AEVAKY------PRGRA 517 (562)
T ss_pred EEccCc-cccc--cchhhhcccHHHH-------------------------------HHHHH-HHhccc------CCceE
Confidence 765321 0000 00111111 111 12344 444 56 78999
Q ss_pred EEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 257 HLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 257 liRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
+||||||||++|||+||++++.++++.+++.+ +|+.
T Consensus 518 lvRpSGTEp~vRv~~Ea~t~~~~~~l~~~v~~-~v~~ 553 (562)
T PLN02895 518 FVRPSGTEDVVRVYAEASTQEAADSLAREVAR-LVYD 553 (562)
T ss_pred EEEcCCCCcEEEEEEEECCHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999999 7754
No 37
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5.3e-30 Score=239.63 Aligned_cols=282 Identities=15% Similarity=0.137 Sum_probs=224.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHh-----CCCCEEEEc
Q 021442 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE-----HPGTTIVTD 75 (312)
Q Consensus 1 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~-----~~~~~Vv~~ 75 (312)
+|+|.||+|.. .....|.+.|...+.|||.|+||||||-.|+-.+|.+++|..-.+++|.++-.- ..-..+..+
T Consensus 252 DFGG~HPDPNL-TYAk~LV~rv~~~~~~fGAA~DGDGDRNMIlG~~~fFVtPsDSvAiIA~na~~IPYF~~~Gv~GfARS 330 (558)
T KOG0625|consen 252 DFGGGHPDPNL-TYAKDLVDRVDRGEIDFGAAFDGDGDRNMILGKNGFFVTPSDSVAIIAANAEAIPYFRKQGVKGFARS 330 (558)
T ss_pred ccCCCCCCCch-hhHHHHHHHhccCCCcccccccCCCcceeeeccCceeeccchhHHHHHhcchhcchhhhcCcchhhhc
Confidence 59999999995 777788888999999999999999999999989999999999999999987542 111348889
Q ss_pred ccCCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHHHHHhc
Q 021442 76 ARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLE 155 (312)
Q Consensus 76 v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell~~~~~ 155 (312)
..+|.+++++|+++|.+++++|||+|++.+.|.... .-++||||=| .-++|.+.+||++|.+.+| .+|+.+
T Consensus 331 mPTs~AlDrVak~~gl~~yEvPTGWKfF~nLmDAgk-----lsiCGEESFG-TGSdHIREKDGiWAvlaWl-sIlA~~-- 401 (558)
T KOG0625|consen 331 MPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAGK-----LSICGEESFG-TGSDHIREKDGIWAVLAWL-SILAHN-- 401 (558)
T ss_pred CCchhHHHHHHHHcCCceEEcCchHHHHHhhhcccc-----eeeccccccc-CCccccccccchhhHHHHH-HHHHhc--
Confidence 999999999999999999999999999999987655 3699999832 2467889999999999887 777762
Q ss_pred CCCCCHHHHHHHhhhhh-cceeEEEEeecCchhhHhHHHHHHHHHHhhhhh-----cccCC---ccccccCccccccccc
Q 021442 156 GSDEGIGSLIKDLEEPL-ESIELRMNIISEPRYAKAKGSEAIEEFRKYIEE-----GRLQG---WELDSCGDCWVSEGCL 226 (312)
Q Consensus 156 ~~~~~lsell~~lp~~~-~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~ 226 (312)
.+..+.+++.+++..| .++..|.+++.-+ ... -.++|+.|++.... ...++ +.+..|++|+|.+.-|
T Consensus 402 -k~~~vedI~~~~W~~YGR~fftRYDYE~~e-~e~--ank~m~~l~a~~~~~~vg~~~~~~~~~y~V~~ad~F~Y~DPvD 477 (558)
T KOG0625|consen 402 -KQNVVEDIVKEHWAKYGRNFFTRYDYEEVE-AEG--ANKMMEDLEALVSDSFVGKSFSPGDEVYKVAKADDFEYTDPVD 477 (558)
T ss_pred -ccccHHHHHHHHHHHhCccceeecchhhcC-hHh--HHHHHHHHHHHhccccccccccCCCceEEEEecCCceecCCCC
Confidence 1214999999999888 4455666665322 111 24688888765442 12223 7889999999999875
Q ss_pred cCCCCCCcccCcCceEEEEeecccCCceEEEEecCCCC---ccEEEEEEeCChhhHHHHHHHHHHHHhhhcccccccchh
Q 021442 227 VDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHN---PNIAVNVQSMVPGGCRSITKSLRDKFLLASGMDKVLDIS 303 (312)
Q Consensus 227 ~~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTE---P~iriy~Ea~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 303 (312)
++++..+|+|+.| ++++++.+|-|||. ..||+|+|...++. .+...+... +|+++ ++..|++|
T Consensus 478 ------GSvs~~QGlri~F-----~dGsR~VfRLSGTGSsGATiRLYie~ye~d~-s~~~~~aq~-~LkPl-i~~alk~~ 543 (558)
T KOG0625|consen 478 ------GSVSKKQGLRIVF-----EDGSRIVFRLSGTGSSGATIRLYIESYEKDV-SKIDQDAQV-ALKPL-IDIALKIS 543 (558)
T ss_pred ------CcccccCceEEEE-----cCCcEEEEEeccCCCCCceEEEehhhhccch-hhhCcCHHH-HHHHH-HHHHHHHH
Confidence 7889999999999 67789999999997 68999999965554 334444455 67777 78889999
Q ss_pred hHHHHhh
Q 021442 304 QIEKYAE 310 (312)
Q Consensus 304 ~~~~~~~ 310 (312)
+|++++-
T Consensus 544 ~~~e~tG 550 (558)
T KOG0625|consen 544 KLKEFTG 550 (558)
T ss_pred hHHHhhC
Confidence 9999985
No 38
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6.4e-30 Score=241.19 Aligned_cols=258 Identities=14% Similarity=0.088 Sum_probs=189.4
Q ss_pred CCCCCCCCCCC------hHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHHHHHhCC----CC
Q 021442 1 MFPNHIPNPED------KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP----GT 70 (312)
Q Consensus 1 ~Fp~~~P~P~~------~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~----~~ 70 (312)
.|.+++|+|.. |..++.|.+. +.+.|||++.|+||||-+|+.+...+++|++.+++++.|+....+ ..
T Consensus 243 ~F~~l~~D~ni~~~~ss~~~ma~l~~~--~d~~d~~aanD~DgDR~~Iv~~~~~~~nPn~~lAv~~~y~~~~~~~~~g~~ 320 (524)
T COG0033 243 DFMGLDPDGNIRMDCSSPCAMAGLLRL--RDKYDFAAANDGDGDRHGIVTPGAGLMNPNHSLAVAIEYLFLHRPYWGGIV 320 (524)
T ss_pred cccCCCCCCCEeEecCcHHHHHHhhcc--ccccccccccCCCcccceeecCCCcccCchHHHHHHHHHHHhCCCccccce
Confidence 48899999975 2233333321 488999999999999999999988999999999999999877543 24
Q ss_pred EEEEcccCCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccCCCCcccCCHHHHHHHHHHHHH
Q 021442 71 TIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMV 150 (312)
Q Consensus 71 ~Vv~~v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~aal~ll~ell 150 (312)
.|..|+.||.+++++++++|..++++||||||+.+.+.... +-||||||-| .+|.+.+|++++..+.+ .+|
T Consensus 321 ~v~ktl~sS~~iDRV~~~lGr~lyEvPvG~K~F~~~l~~g~-----~~~~GEESaG---a~~lRek~g~Wa~~~~~-~Il 391 (524)
T COG0033 321 AVGKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDGLDAGS-----FGFGGEESAG---ASFLREKGGVWATDKDG-NIL 391 (524)
T ss_pred eeeeccccHHHHHHHHHHhCCceEEcCCcceeeeccccccc-----eeeccccccc---ccceecCCCceeeechh-HHH
Confidence 69999999999999999999999999999999999987655 5799999944 45556666666644333 222
Q ss_pred HHHh----cCCCCCHHHHHHHhhhhh-cceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCcccccccc
Q 021442 151 RMKL----EGSDEGIGSLIKDLEEPL-ESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEGC 225 (312)
Q Consensus 151 ~~~~----~~~~~~lsell~~lp~~~-~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (312)
+-.. +..++..++..+++-+.| ...+.++..+-.. +++..|++..+ ..+.+..+-.+++|++.+..
T Consensus 392 all~aei~a~t~~~~~~~y~~~~r~~~~~~Yervda~aa~--------~~~a~L~~ls~-~~v~~t~l~g~~~~a~~~~~ 462 (524)
T COG0033 392 ALLAAEITAVTGKIPQEHYAELGRNFGRPDYERVDAEAAN--------AQKARLRKLSP-EMVSATTLAGDPITAYLTPA 462 (524)
T ss_pred HHHhhhchhhhccCHHHHHHHHHHHhCcccHHHhcCchhH--------HHHHHHHhhCc-ccCCccccCCCcchhcccCC
Confidence 2110 125778888888887665 3345666665431 34444444333 22333333336777776665
Q ss_pred ccCCCCCCcccCcCceEEEEeecccCCceEEEEecCCCCccEEEEEEe-CChhhHHHHHHHHHHHHh
Q 021442 226 LVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQS-MVPGGCRSITKSLRDKFL 291 (312)
Q Consensus 226 ~~~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea-~~~~~a~~l~~~~~~~~~ 291 (312)
+++.+.+.|+|+.| ++||+..||||||..+|||+|+ .+.+...+...+++. ++
T Consensus 463 ------~Gn~s~~~GLkV~~------~ng~fa~R~SGT~~t~kiY~Esf~~~~h~~~~q~~~~~-iV 516 (524)
T COG0033 463 ------PGNGAAIGGLKVTT------ENGWFAARPSGTEATYKIYAESFEGDEHLKQIQKEAAE-IV 516 (524)
T ss_pred ------CCchhhcCceEEEe------eCcEEEEecCCcchhhhhhhhhhCChHHHHHHHHHHHH-HH
Confidence 47888999999999 8889999999999999999999 455566666666666 44
No 39
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=99.93 E-value=5.3e-26 Score=183.46 Aligned_cols=112 Identities=28% Similarity=0.454 Sum_probs=100.4
Q ss_pred ChhHHHHHHHHHHHHhCC-CCEEEEcccCCHHHHHHHHHcCCcEEEeecchHHHHHHHhccCcCCcceeEEeecccCccC
Q 021442 51 NGDKLIALMSAIVLKEHP-GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGAL 129 (312)
Q Consensus 51 ~~d~~~~Ll~~~ll~~~~-~~~Vv~~v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~~~~~~~~~~~~ggE~sG~~~~ 129 (312)
+||++++|+++++++.++ +..||.|++||++++++|+++|+++++|||||+|+.++|.+.++ +||||+|||++|
T Consensus 1 ~gd~~~al~a~~~l~~~~~~~~vv~~v~sS~~~~~~~~~~g~~~~~t~vG~~~i~~~~~~~~~-----~~ggE~sgg~~~ 75 (113)
T PF02880_consen 1 NGDELLALLADYLLEEHKPGGTVVVTVVSSRALDKIAEKHGGKVIRTKVGFKNIAEKMREENA-----VFGGEESGGFIF 75 (113)
T ss_dssp HHHHHHHHHHHHHHHCHTTTEEEEEETTS-THHHHHHHHTTSEEEEESSSHHHHHHHHHHTTE-----SEEEETTSEEEE
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHCCCEEEEecCCcHHHHHHHhhhce-----eEEecccCeEEe
Confidence 589999999999998644 43799999999999999999999999999999999999999874 899999999999
Q ss_pred CCCcccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhhhhh
Q 021442 130 KENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPL 172 (312)
Q Consensus 130 ~~~~~~~Dgi~aal~ll~ell~~~~~~~~~~lsell~~lp~~~ 172 (312)
+++++++|||+++++++ +|++. +|++|+++++++|+.|
T Consensus 76 ~~~~~~~Dgi~a~~~~l-~~l~~----~~~~ls~ll~~l~~~Y 113 (113)
T PF02880_consen 76 PDFSYDKDGIYAALLLL-ELLAE----EGKTLSELLDELPKKY 113 (113)
T ss_dssp TTTESSE-HHHHHHHHH-HHHHH----HTS-HHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHHHHhccC
Confidence 99999999999999765 99987 5999999999999875
No 40
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1e-16 Score=154.31 Aligned_cols=215 Identities=15% Similarity=0.185 Sum_probs=149.0
Q ss_pred EEEEecCCCCeeEEE--cCCC--cccChhHHHHHHHHHHHHh---C---CCCEEEEcccCCHHHHHHHHH-cCCcEEEee
Q 021442 29 LGVVFDTDVDRSGVV--DNKG--NPINGDKLIALMSAIVLKE---H---PGTTIVTDARTSMALTKFITD-RGGNHCLYR 97 (312)
Q Consensus 29 lGia~DgDgDR~~iv--D~~G--~~l~~d~~~~Ll~~~ll~~---~---~~~~Vv~~v~sS~~l~~ia~~-~G~~v~~t~ 97 (312)
....||||+||++.+ ++++ ++++||.+..+++.++... . -...||.|+.|+..-.++... +++.++.++
T Consensus 279 ~caSfDGDADRlvyf~~~~~~~f~llDGDkistlla~~l~~ll~~~~~~l~~GvVqtaYaNgast~yl~~~l~~~vv~v~ 358 (539)
T KOG2537|consen 279 RCASFDGDADRLVYFYIDDDSEFHLLDGDKIATLIAGYLRELLKQIELSLRLGVVQTAYANGASTDYLKETLKFPVVCVP 358 (539)
T ss_pred ceeeeecccceeEEEEecCCceeEeecchHHHHHHHHHHHHHHHHhhccceeeeEEEEeecCccHhhhhhhcCCceEEec
Confidence 578899999998886 6665 8999999999999997542 1 124699999999988888877 999999999
Q ss_pred cchHHHHHHHhccCcCCcceeEEeecccC--ccCCCC-------------------------------cccCCHHHHHHH
Q 021442 98 VGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKEN-------------------------------YFLDDGAYMVVK 144 (312)
Q Consensus 98 vG~~~i~~~~~~~~~~~~~~~~ggE~sG~--~~~~~~-------------------------------~~~~Dgi~aal~ 144 (312)
||.|++.+++.+.+. -+-+|.+|| +.|++. +...||+.-.+.
T Consensus 359 tGvKhlh~~A~efDi-----GiyFEaNGHGti~FS~~~~~~i~~~~~~~~~~~~~a~~~L~~~~~Linq~vGDAisd~ll 433 (539)
T KOG2537|consen 359 TGVKHLHHAAAEFDI-----GIYFEANGHGTILFSEAFLATIKDLAETKEPGESKALKTLKLLSDLINQTVGDAISDMLA 433 (539)
T ss_pred cccchHHHHHHhhcc-----eeEEeccCccceeehHHHHHhhhhhhhCCCccchHHHHHHHHHHhhhcccchhhhcchHH
Confidence 999999999997764 477899987 455442 224566644443
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHhhhhhcceeEEEEeecCchhhHhHHHHHHHHHHhhhhhcccCCccccccCccccccc
Q 021442 145 IIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEEGRLQGWELDSCGDCWVSEG 224 (312)
Q Consensus 145 ll~ell~~~~~~~~~~lsell~~lp~~~~~~~~~i~~~~~~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (312)
+- -+++. .+.+..+|-+ ++...+..+.++.+++.. ..+. -..-+++ ..+
T Consensus 434 v~-~il~~----~~~s~~~w~e-~y~dlPnrq~Kv~v~Dr~-i~~t--tdaer~~---v~P------------------- 482 (539)
T KOG2537|consen 434 VE-AILAH----KGWSVQDWDE-LYRDLPNRQLKVKVPDRS-IIKT--TDAERQL---VKP------------------- 482 (539)
T ss_pred HH-HHHHh----cCCCHHHHHH-HhcCCccceEEEEeccce-eeec--hhhhhhc---CCc-------------------
Confidence 22 22333 5888888887 444455667777776421 0000 0001111 000
Q ss_pred cccCCCCCCcccCcCceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 225 CLVDSNESPAAIDARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 225 ~~~~~~~~~~~~~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
++-...+|-.-..+ ..|+.++||||||.++|||+||.+.+.++++..++.+ +|.+
T Consensus 483 -------~glQ~~Ida~vaky------~~gRaFvR~SGTEdvVRVYAEa~t~~~~d~l~~~v~~-~v~~ 537 (539)
T KOG2537|consen 483 -------VGLQDKIDALVAKY------KRGRSFVRPSGTEDVVRVYAEASTKEDADQLALEVAQ-LVLK 537 (539)
T ss_pred -------HHHHHHHHHHHhhc------cCCceEEeccCccceEEEEEecCchhhHHHHHHHHHH-HHHh
Confidence 01111222222223 5799999999999999999999999999999999999 7765
No 41
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=99.44 E-value=1.7e-13 Score=101.90 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=43.3
Q ss_pred CcCceEEEEeecccCCceEEE-EecCCCCccEEEEEEeCChhhHHHHHHHHHHHHh
Q 021442 237 DARMYRAKVTDEEHGQYGWIH-LRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFL 291 (312)
Q Consensus 237 ~~DGlki~~~~~~~~~~~wvl-iRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~ 291 (312)
..||+++.+ .|||++ ||||||||++|+|+||.+.+.++++.+++.+ .|
T Consensus 24 ~~~~~~~~~------~dG~~l~vR~SgTEP~iRv~~Ea~~~~~~~~~~~~i~~-~i 72 (73)
T PF00408_consen 24 TIDGIKILF------EDGWRLLVRPSGTEPKIRVYVEAPDEEELEEIAEEIAE-AI 72 (73)
T ss_dssp HHHCEEEEE------TTEEEEEEEEESSSSEEEEEEEESSHHHHHHHHHHHHH-HH
T ss_pred ccceEEEEC------CCceEEEEECCCCCceEEEEEEeCCHHHHHHHHHHHHH-hh
Confidence 578999999 677666 9999999999999999999999999999888 55
No 42
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=99.08 E-value=1.4e-10 Score=91.88 Aligned_cols=46 Identities=52% Similarity=0.858 Sum_probs=42.6
Q ss_pred CCCC-CCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCC
Q 021442 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKG 47 (312)
Q Consensus 1 ~Fp~-~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G 47 (312)
+||+ +.|||+. +++..+.+++++.++|+|+++||||||++++|++|
T Consensus 58 ~f~~~~~p~p~~-~~l~~~~~~v~~~~ad~g~~~DgDaDRl~~vd~~G 104 (104)
T PF02879_consen 58 DFPNQHAPNPEE-ESLQRLIKIVRESGADLGIAFDGDADRLGVVDENG 104 (104)
T ss_dssp TGTTTSTSSTST-TTTHHHHHHHHHSTTSEEEEE-TTSSBEEEEETTS
T ss_pred cccccccccccc-chhHHHHHHhhccCceEEEEECCcCceeEEECCCC
Confidence 5898 8999996 89999999999999999999999999999999987
No 43
>PF09981 DUF2218: Uncharacterized protein conserved in bacteria (DUF2218); InterPro: IPR014543 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2JPI_A.
Probab=73.67 E-value=29 Score=26.50 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=37.1
Q ss_pred ceEEEEeecccCCceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhhcccccccch
Q 021442 240 MYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLASGMDKVLDI 302 (312)
Q Consensus 240 Glki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 302 (312)
.-++.| +.|-+.+++++ -.+.+.+||.+++.+.++..-+.. .|.-.+-...|++
T Consensus 33 ~g~i~f------~~G~~~l~a~~--~~L~l~vea~~~~~L~~~~~vv~~-HL~rFa~re~l~v 86 (89)
T PF09981_consen 33 SGRITF------PFGTCTLSAEP--DALTLRVEAPDAEALARLEDVVAR-HLERFAFREELEV 86 (89)
T ss_dssp EEEEE-------SSS-EEEEEET--TEEEEEEEESSHHHHHHHHHHHHH-HHHHTSTTSS---
T ss_pred ceEEEe------CCEEEEEEeCC--CeEEEEEEeCCHHHHHHHHHHHHH-HHHHHhccCCccc
Confidence 557888 78888888754 568888999999999988888777 6655554444443
No 44
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=72.68 E-value=5.4 Score=38.05 Aligned_cols=49 Identities=27% Similarity=0.366 Sum_probs=37.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHHHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAI 62 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~~~ 62 (312)
|.|+.|||. -+.+..-.+++++.+.||.+|.-| |.++++-+..+.-+.|
T Consensus 62 ~~GVEPNP~-~~Tv~kaV~i~kee~idflLAVGG-----------GSViD~tK~IAa~a~y 110 (384)
T COG1979 62 FGGVEPNPR-LETLMKAVEICKEENIDFLLAVGG-----------GSVIDGTKFIAAAAKY 110 (384)
T ss_pred ecCCCCCch-HHHHHHHHHHHHHcCceEEEEecC-----------cchhhhHHHHHhhccc
Confidence 889999998 588888899999999999988754 4556665555554443
No 45
>PF15585 Imm46: Immunity protein 46
Probab=63.05 E-value=9.3 Score=31.37 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=32.4
Q ss_pred ceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhhcccccccchh
Q 021442 253 YGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLASGMDKVLDIS 303 (312)
Q Consensus 253 ~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 303 (312)
+||+.||.|..+ .++..+.+++.+++.+ .|.++.....+|+.
T Consensus 5 HGW~tI~~s~~~--------~D~~~~~~~~~~~i~~-~i~~~~~~~~~~L~ 46 (129)
T PF15585_consen 5 HGWATIRESYSD--------EDDEAKLEKIIQEIQE-RISELDWGGLVDLR 46 (129)
T ss_pred EeEEEEeccccc--------CcchhhHHHHHHHHHH-HHHhcCCCCeEEEE
Confidence 799999999654 3445678888999999 88888777666653
No 46
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.84 E-value=5.9 Score=39.21 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=22.9
Q ss_pred cCceEEEEeecccCCceEEEEecCCCCccEEEEEEe
Q 021442 238 ARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNVQS 273 (312)
Q Consensus 238 ~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~Ea 273 (312)
-....+.- .++-|+.+||.+|-|++|.|+|-
T Consensus 64 kemY~F~D-----kggr~laLRpe~Tapv~R~~~en 94 (429)
T COG0124 64 KEMYTFKD-----KGGRSLALRPELTAPVARAVAEN 94 (429)
T ss_pred cceEEEEe-----CCCCEEEecccCcHHHHHHHHhc
Confidence 44555543 23459999999999999998764
No 47
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=47.24 E-value=35 Score=23.80 Aligned_cols=34 Identities=6% Similarity=0.212 Sum_probs=26.5
Q ss_pred ccEEEE-EEeCChhhHHHHHHHHHHHHhhhccccc
Q 021442 265 PNIAVN-VQSMVPGGCRSITKSLRDKFLLASGMDK 298 (312)
Q Consensus 265 P~iriy-~Ea~~~~~a~~l~~~~~~~~~~~~~~~~ 298 (312)
|.++|. .++.+.++.+++.+.+.+.+...+|.+.
T Consensus 2 P~v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~ 36 (64)
T PRK01964 2 PIVQIQLLEGRPEEKIKNLIREVTEAISATLDVPK 36 (64)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCh
Confidence 889998 4889999999999999984444456554
No 48
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3.2.2.21 from EC. AlkA (3-methyladenine-DNA glycosylase II) is a base excision repair glycosylase from Escherichia coli. It removes a variety of alkylated bases from DNA, primarily by removing alkylation damage from duplex and single stranded DNA. AlkA flips a 1-azaribose abasic nucleotide out of DNA. This produces a 66 degrees bend in the DNA and a marked widening of the minor groove []. This groove is a large hydrophobic cleft, which is unusually rich in aromatic residues. AlkA recognises electron-deficient methylated bases through pi-donor/acceptor interactions involving the electron-rich aromatic cleft. AlkA is similar in fold and active site location to the bifunctional glycosylase/lyase endonuclease III. This suggests that the two may use similar mechanisms for base excision []. The structural analysis of the AlkA and AlkA-hypoxanthine structures indicate that free hypoxanthine binding in the active site may inhibit glycosylase activity [].; GO: 0003905 alkylbase DNA N-glycosylase activity; PDB: 1MPG_B 3CWS_D 3CW7_C 3CWA_B 3D4V_A 3CWT_C 3CWU_B 3OGD_A 3CVS_C 1PVS_A ....
Probab=46.25 E-value=56 Score=26.24 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=38.0
Q ss_pred ceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhhcccccccchhhHHH
Q 021442 253 YGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLASGMDKVLDISQIEK 307 (312)
Q Consensus 253 ~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (312)
.||+.+++...+..+++.++..+...+..++..++. ++ |=+-|+..+|+
T Consensus 45 ~g~v~v~~~~~~~~l~v~~~~~~~~~l~~~~~rvRr-lf-----DLdaDp~~I~~ 93 (116)
T PF06029_consen 45 PGWVSVRHDPEKNHLRVTLSLSDLRDLPAVIARVRR-LF-----DLDADPQAIEA 93 (116)
T ss_dssp EEEEEEEEETTTTEEEEEE-GGGGGGHHHHHHHHHH-HT-----TTT--HHHHHH
T ss_pred EEEEEEEEcCCCCEEEEEEEcccHHHHHHHHHHHHH-Hh-----CCCCCHHHHHH
Confidence 489999999999999999999988899999988887 33 33456666665
No 49
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=44.62 E-value=38 Score=29.98 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=31.2
Q ss_pred EEEecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhhhc
Q 021442 256 IHLRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLLAS 294 (312)
Q Consensus 256 vliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~~~ 294 (312)
+-+.+.+...+++|.+++.||++|.++++.+.+ ...+.
T Consensus 110 i~v~~~~~t~ii~Isv~~~dp~~A~~ian~~~~-~~~~~ 147 (226)
T TIGR01006 110 VTVTNPTDTRLISISVKDKTPQDASKIANSLRE-VASKK 147 (226)
T ss_pred eEEeCCCCcEEEEEEEeCCCHHHHHHHHHHHHH-HHHHH
Confidence 455666667999999999999999999999998 55443
No 50
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=44.33 E-value=38 Score=22.83 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=25.1
Q ss_pred ccEEEE-EEeCChhhHHHHHHHHHHHHhhhccccc
Q 021442 265 PNIAVN-VQSMVPGGCRSITKSLRDKFLLASGMDK 298 (312)
Q Consensus 265 P~iriy-~Ea~~~~~a~~l~~~~~~~~~~~~~~~~ 298 (312)
|.++|+ .++.++++.+++.+.+.+-+.+..|.+.
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~ 35 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVSEILGAPE 35 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 788898 4678999999999999983334345543
No 51
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=43.06 E-value=89 Score=29.22 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHHHHhcCCcEEEEecCCCC---------eeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCHHHHHHHHHc
Q 021442 19 RAAVLENNADLGVVFDTDVD---------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDR 89 (312)
Q Consensus 19 ~~~v~~~~aDlGia~DgDgD---------R~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~~l~~ia~~~ 89 (312)
.+.+++.++|=++.+|+||+ -++++..+|.++++.- ...++ +=.+-..+-+.+++.
T Consensus 167 ~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l--------------~~~~L-~GItR~~vi~l~~~~ 231 (313)
T TIGR01123 167 QAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPL--------------SGSIL-PGITRDSLLQLAKDL 231 (313)
T ss_pred HHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCC--------------CCCCC-cchHHHHHHHHHHHc
Confidence 45567789999999999988 4555655556655530 01122 112234455788999
Q ss_pred CCcEEEeecchHHHHHH
Q 021442 90 GGNHCLYRVGYRNVIDK 106 (312)
Q Consensus 90 G~~v~~t~vG~~~i~~~ 106 (312)
|.++...++....+.+.
T Consensus 232 Gi~v~e~~i~~~~l~~A 248 (313)
T TIGR01123 232 GMEVEERRIDIDELKAF 248 (313)
T ss_pred CCeEEEEecCHHHHHHH
Confidence 99999999998877654
No 52
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=41.83 E-value=38 Score=25.34 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=22.8
Q ss_pred cEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 266 NIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 266 ~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
.+.+.+++.|.+.|++.++++++++|.+
T Consensus 41 ~~~l~~~~~~~e~a~~~v~~i~~~LLaN 68 (80)
T PF02700_consen 41 YIELELEADDEEEAEEQVEEICEKLLAN 68 (80)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHHTTS-
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHhcCC
Confidence 4678999999999999999999977654
No 53
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=37.95 E-value=33 Score=28.73 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEE-----ecCCCCeeEEEcCCCcccCh
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVV-----FDTDVDRSGVVDNKGNPING 52 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia-----~DgDgDR~~ivD~~G~~l~~ 52 (312)
+|+..++-++--++..-.-.+...+||+.|| .=|.|.=++++|++|+++++
T Consensus 68 i~Tn~aDlTrmPA~~K~LmavD~~dADlvIARGRLGvPGSGSmlvimD~kGRiLta 123 (154)
T PF11576_consen 68 IPTNSADLTRMPALSKALMAVDISDADLVIARGRLGVPGSGSMLVIMDSKGRILTA 123 (154)
T ss_dssp S--GGGGGSSSHHHHHHHHHHHHH--SEEEEEEE-SSTTS-EEEEEEETTS-EEEE
T ss_pred ccCcchhcccCcHHHhHHHheeccCCcEEEEcccccCCCCccEEEEEcCCCcEEee
Confidence 3444444444233444444577899999987 45778878888999998876
No 54
>PRK05783 hypothetical protein; Provisional
Probab=37.62 E-value=40 Score=25.58 Aligned_cols=28 Identities=7% Similarity=0.210 Sum_probs=23.9
Q ss_pred cEEEEEEeCChhhHHHHHHHHHHHH-hhh
Q 021442 266 NIAVNVQSMVPGGCRSITKSLRDKF-LLA 293 (312)
Q Consensus 266 ~iriy~Ea~~~~~a~~l~~~~~~~~-~~~ 293 (312)
.|.+++++.|++.|++..+++++++ |.+
T Consensus 43 ~iel~l~~~~~e~a~~~v~~mc~~LrLaN 71 (84)
T PRK05783 43 YLVFKIEANSPEEAKELALKIAREGRLYN 71 (84)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHhcCcCC
Confidence 4788999999999999999999966 544
No 55
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=37.48 E-value=55 Score=22.45 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=25.3
Q ss_pred ccEEEE-EEeCChhhHHHHHHHHHHHHhhhccccc
Q 021442 265 PNIAVN-VQSMVPGGCRSITKSLRDKFLLASGMDK 298 (312)
Q Consensus 265 P~iriy-~Ea~~~~~a~~l~~~~~~~~~~~~~~~~ 298 (312)
|.++|+ .++.+.++.+++.+.+.+-+.+.+|.+.
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~ 36 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTVETLGCPP 36 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCCh
Confidence 788998 4668999999999999883444445443
No 56
>PF12909 DUF3832: Protein of unknown function (DUF3832); InterPro: IPR024308 This domain found in bacteria and Acanthamoeba polyphaga mimivirus (APMV) L591 protein has no known function. In Q0AZ30 from SWISSPROT and other uncharacterised proteins this domain is found C-terminal, while the N terminus shows remote homology to the bacterial toxin/antitoxin 'addiction module' (PF12910 from PFAM).; PDB: 3K6Q_C.
Probab=36.72 E-value=1.2e+02 Score=23.33 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=25.4
Q ss_pred CCceEEEEecCCCCccEEEEEEeCChhh-HHHHHHHHHHHHhhh
Q 021442 251 GQYGWIHLRQSIHNPNIAVNVQSMVPGG-CRSITKSLRDKFLLA 293 (312)
Q Consensus 251 ~~~~wvliRpSgTEP~iriy~Ea~~~~~-a~~l~~~~~~~~~~~ 293 (312)
+++||+.+--.+.+ ||+++++.+. .+++.+.+++ +.++
T Consensus 14 e~dg~~~~~l~~ld----i~~~g~T~eeA~~~lie~l~d-YAed 52 (89)
T PF12909_consen 14 EDDGSITVSLPELD----IYANGPTLEEAIEDLIEDLRD-YAED 52 (89)
T ss_dssp EETTEEEEEECCGT----EEEEESSHHHHHHHHHHHHHH-HHHH
T ss_pred cCCCeEEEEecCee----EEecCCCHHHHHHHHHHHHHH-HHHH
Confidence 47899865554444 9999999854 4556666666 5543
No 57
>PRK08452 flagellar protein FlaG; Provisional
Probab=35.37 E-value=1.7e+02 Score=23.88 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCeeEE--EcCC-C---cccChhHHHHHHHHH
Q 021442 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDNK-G---NPINGDKLIALMSAI 62 (312)
Q Consensus 13 ~~l~~l~~~v~~~~aDlGia~DgDgDR~~i--vD~~-G---~~l~~d~~~~Ll~~~ 62 (312)
...+.+-+.+...+-++=|.+|.+.+|++| +|.+ | +-+.+++++-|+...
T Consensus 57 ~~ve~lN~~~~~~~~~L~F~~de~~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m 112 (124)
T PRK08452 57 ELTEKLNEEMKRLDTNIRFGYNDKIKGLVVSVKEANGGKVIREIPSKEAIELMEYM 112 (124)
T ss_pred HHHHHHHHHHHhhCCceEEEEcCCCCcEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 445666667777888999999999999776 4665 5 467888988887764
No 58
>PF14028 SpaB_C: SpaB C-terminal domain
Probab=35.26 E-value=73 Score=28.98 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=28.5
Q ss_pred ceEEEEecCCCCccEEEEEEeCChh------hHHHHHHHHHHHHhh
Q 021442 253 YGWIHLRQSIHNPNIAVNVQSMVPG------GCRSITKSLRDKFLL 292 (312)
Q Consensus 253 ~~wvliRpSgTEP~iriy~Ea~~~~------~a~~l~~~~~~~~~~ 292 (312)
+.|+.||=....|.+|+++...+++ ....++..+.+ .++
T Consensus 37 ~~wFFiRY~d~gpHLRLR~~~~~~~~~~~~~~~~~v~~~l~~-~l~ 81 (283)
T PF14028_consen 37 DRWFFIRYWDPGPHLRLRFRGSPDADEVDAELYGEVLPRLRA-WLR 81 (283)
T ss_pred cceEEEecCCCCCeEEEEEECCCcchhhhhhhHHHHHHHHHH-HHH
Confidence 5799999999999999999987654 33444444444 444
No 59
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=33.80 E-value=86 Score=26.59 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=24.2
Q ss_pred CCCeeEEEcCCCcccChhHHHHHHHHHH
Q 021442 36 DVDRSGVVDNKGNPINGDKLIALMSAIV 63 (312)
Q Consensus 36 DgDR~~ivD~~G~~l~~d~~~~Ll~~~l 63 (312)
++|.++++|++|+.++..++..++-.+.
T Consensus 66 ~~~~~i~LDe~Gk~~sS~~fA~~l~~~~ 93 (157)
T PRK00103 66 KGARVIALDERGKQLSSEEFAQELERWR 93 (157)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 4678888999999999999999888774
No 60
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=32.95 E-value=72 Score=21.78 Aligned_cols=33 Identities=9% Similarity=0.247 Sum_probs=25.5
Q ss_pred ccEEEEE-EeCChhhHHHHHHHHHHHHhhhcccc
Q 021442 265 PNIAVNV-QSMVPGGCRSITKSLRDKFLLASGMD 297 (312)
Q Consensus 265 P~iriy~-Ea~~~~~a~~l~~~~~~~~~~~~~~~ 297 (312)
|.++|.+ ++.++++.+++.+.+.+.+....|.+
T Consensus 2 P~i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p 35 (61)
T PRK02220 2 PYVHIKLIEGRTEEQLKALVKDVTAAVSKNTGAP 35 (61)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7888884 67999999999999998444444554
No 61
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=31.30 E-value=1.5e+02 Score=23.04 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCeeEE--EcC-CCc---ccChhHHHHHHHHH
Q 021442 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDN-KGN---PINGDKLIALMSAI 62 (312)
Q Consensus 13 ~~l~~l~~~v~~~~aDlGia~DgDgDR~~i--vD~-~G~---~l~~d~~~~Ll~~~ 62 (312)
..++.+-+.+...+..|-|.+|.|.+|+.+ +|. .|. -+.+++++-|....
T Consensus 41 ~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 41 EAVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp HHHHHHHHHHTTSS--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHHHHHHH
Confidence 456667777788899999999999999766 466 465 57889888877654
No 62
>PRK07738 flagellar protein FlaG; Provisional
Probab=31.04 E-value=2.2e+02 Score=22.99 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCeeEE--EcC-CC---cccChhHHHHHHHHH
Q 021442 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDN-KG---NPINGDKLIALMSAI 62 (312)
Q Consensus 13 ~~l~~l~~~v~~~~aDlGia~DgDgDR~~i--vD~-~G---~~l~~d~~~~Ll~~~ 62 (312)
..++.+-+.+...+-+|=|.+|.+.+|+.+ +|. .| +-+.+++++-|+...
T Consensus 50 ~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m 105 (117)
T PRK07738 50 EVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDERTNEVIREIPPKKLLDMYAAM 105 (117)
T ss_pred HHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCeeeeeCCCHHHHHHHHHH
Confidence 456667777788899999999999999776 566 45 367888888887765
No 63
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=30.76 E-value=3.1e+02 Score=26.38 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEcccCCHHHHHHHHHcCCcEEEeecch
Q 021442 53 DKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGY 100 (312)
Q Consensus 53 d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~~l~~ia~~~G~~v~~t~vG~ 100 (312)
|+++.++++.++. +|..|+++..+=..-...++..|++++.++...
T Consensus 85 de~i~~l~~~~~~--~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~ 130 (356)
T COG0079 85 DELIELLVRAFVE--PGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE 130 (356)
T ss_pred HHHHHHHHHHhhc--CCCEEEEcCCChHHHHHHHHhcCCeEEEecccc
Confidence 6778888777654 455788887777777888888999998888764
No 64
>PRK08868 flagellar protein FlaG; Provisional
Probab=29.65 E-value=2.3e+02 Score=23.83 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCeeEE--EcC-CC---cccChhHHHHHHHHH
Q 021442 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDN-KG---NPINGDKLIALMSAI 62 (312)
Q Consensus 13 ~~l~~l~~~v~~~~aDlGia~DgDgDR~~i--vD~-~G---~~l~~d~~~~Ll~~~ 62 (312)
..++.+-+.+...+-+|-|.+|.|.+|++| +|. .| +.+.+++++.|+...
T Consensus 75 ~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l 130 (144)
T PRK08868 75 KMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRL 130 (144)
T ss_pred HHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 567777788888999999999999999776 454 45 467889999888764
No 65
>PRK00907 hypothetical protein; Provisional
Probab=29.43 E-value=2.1e+02 Score=21.98 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=25.8
Q ss_pred ceEEEEecCCCCcc--EEEEEEeCChhhHHHHHHHHHH
Q 021442 253 YGWIHLRQSIHNPN--IAVNVQSMVPGGCRSITKSLRD 288 (312)
Q Consensus 253 ~~wvliRpSgTEP~--iriy~Ea~~~~~a~~l~~~~~~ 288 (312)
..-+.+|||.+.-. +++.+.|.+.++.+.+-+++.+
T Consensus 47 ~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~ 84 (92)
T PRK00907 47 QERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRD 84 (92)
T ss_pred cCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhh
Confidence 34555688877755 4556678899999888877665
No 66
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=28.41 E-value=52 Score=23.09 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=21.3
Q ss_pred CCCCccEEEEEEeCChhhHHHHHHHHH
Q 021442 261 SIHNPNIAVNVQSMVPGGCRSITKSLR 287 (312)
Q Consensus 261 SgTEP~iriy~Ea~~~~~a~~l~~~~~ 287 (312)
.|+...++||+...+.++|+++++++.
T Consensus 40 ~g~~~~~~v~V~~~d~~~A~~il~~~~ 66 (67)
T PF09413_consen 40 PGTGGQVEVYVPEEDYERAREILEEFE 66 (67)
T ss_dssp S--SSSEEEEEEGGGHHHHHHHHHHTT
T ss_pred cCccCceEEEECHHHHHHHHHHHHHhc
Confidence 455555999999999999999998764
No 67
>PRK14644 hypothetical protein; Provisional
Probab=27.04 E-value=1.3e+02 Score=24.90 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=28.5
Q ss_pred EecCCCCccEEEEEEeCChhhHHHHHHHHHHHHhh
Q 021442 258 LRQSIHNPNIAVNVQSMVPGGCRSITKSLRDKFLL 292 (312)
Q Consensus 258 iRpSgTEP~iriy~Ea~~~~~a~~l~~~~~~~~~~ 292 (312)
+...+-.+.+|||++..+-+.|+.+.+.+.+ +|.
T Consensus 20 ~~~~~~~~~LrV~Idk~~iddC~~vSr~is~-~LD 53 (136)
T PRK14644 20 IVKEDGDLFLEVILNSRDLKDIEELTKEISD-FID 53 (136)
T ss_pred EEeCCCCEEEEEEECCCCHHHHHHHHHHHHH-Hhc
Confidence 3677778889999998899999999998888 654
No 68
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=26.91 E-value=1.9e+02 Score=29.78 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCccc-ChhHHHHHHHHHHHHhCCCCEEEEcccCCHHHHHHHHHcCCcE
Q 021442 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPI-NGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNH 93 (312)
Q Consensus 15 l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l-~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~~l~~ia~~~G~~v 93 (312)
.+++.++++..+.| |+=.|-=|+|-.+.|.+|+.+ +-....+=|.....+..++..+|.+.+++...+.++......+
T Consensus 247 ~~q~~~~~~~~gFD-G~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~~~g~~~~a~~~~~d~ 325 (559)
T PF13199_consen 247 INQMNKAIQNFGFD-GWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVSGYGIEQIAKTSKVDF 325 (559)
T ss_dssp HHHHHHHHHHHT---EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GGGTTHHHHTT-S--SS
T ss_pred HHHHHHHHHccCCc-eEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccCccchhhhhcccccce
Confidence 56677778888888 889999999999999999999 6666666677777777788889999999999999998777777
Q ss_pred EEee-----cchHHHHHHHhccCcC----CcceeEEeeccc
Q 021442 94 CLYR-----VGYRNVIDKGVHLNED----GIETHLMMETSG 125 (312)
Q Consensus 94 ~~t~-----vG~~~i~~~~~~~~~~----~~~~~~ggE~sG 125 (312)
+++. ..+..+.+.+.+.... |...++|+-++.
T Consensus 326 lY~EvW~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~AAYmn~ 366 (559)
T PF13199_consen 326 LYNEVWDDYDTYGDLKRIIDQNRKYTSSGGKSTVVAAYMNY 366 (559)
T ss_dssp EEEE--SBS-BHHHHHHHHHHHHHHH---S--EEEE-----
T ss_pred eeeecccccccHHHHHHHHHHHhhhhccccchhhhHHHhhh
Confidence 7764 4677777766654332 445677775554
No 69
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=26.48 E-value=95 Score=30.09 Aligned_cols=47 Identities=30% Similarity=0.410 Sum_probs=36.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMS 60 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~ 60 (312)
|-+..|||. -+..+...+.+++.++|+.|++= -|..++--+.+++++
T Consensus 65 f~~v~~np~-~~~v~~~~~~~~~~~~D~IiaiG-----------GGS~iD~AK~ia~~~ 111 (383)
T PRK09860 65 YDGTQPNPT-TENVAAGLKLLKENNCDSVISLG-----------GGSPHDCAKGIALVA 111 (383)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHHcCCCEEEEeC-----------CchHHHHHHHHHHHH
Confidence 667889998 47889999999999999988764 456666666666644
No 70
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=26.26 E-value=1.3e+02 Score=25.19 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecCCC
Q 021442 12 KTAMALTRAAVLENNADLGVVFDTDV 37 (312)
Q Consensus 12 ~~~l~~l~~~v~~~~aDlGia~DgDg 37 (312)
|..-..+.+.|.+..+|+||.++|-|
T Consensus 41 pd~a~~va~~V~~g~~~~GIliCGtG 66 (144)
T TIGR00689 41 PDYAKLVADKVVAGEVSLGILICGTG 66 (144)
T ss_pred HHHHHHHHHHHHcCCCceEEEEcCCc
Confidence 56666677777777777777766554
No 71
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=26.20 E-value=23 Score=21.92 Aligned_cols=23 Identities=9% Similarity=-0.077 Sum_probs=17.3
Q ss_pred HHhcCCcEEEEecCCCCeeEEEc
Q 021442 22 VLENNADLGVVFDTDVDRSGVVD 44 (312)
Q Consensus 22 v~~~~aDlGia~DgDgDR~~ivD 44 (312)
+.....+...++.+||.++++.-
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEe
Confidence 34556788999999999999983
No 72
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=25.92 E-value=1.9e+02 Score=25.54 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=35.3
Q ss_pred CceEEEEecCCCCccEEEEEE-eCChhhHHHHHHHHHHHHhhhccccc
Q 021442 252 QYGWIHLRQSIHNPNIAVNVQ-SMVPGGCRSITKSLRDKFLLASGMDK 298 (312)
Q Consensus 252 ~~~wvliRpSgTEP~iriy~E-a~~~~~a~~l~~~~~~~~~~~~~~~~ 298 (312)
+..-++|=+|| ++|+. |++++.++.-+..+.. .||++|+.-
T Consensus 67 P~~ta~I~ssG-----Ki~ctgA~se~~ar~aark~aR-ilqkLgf~~ 108 (200)
T KOG3302|consen 67 PRTTALIFSSG-----KIVCTGAKSEDSARLAARKYAR-ILQKLGFPV 108 (200)
T ss_pred CceEEEEecCC-----cEEEeccCCHHHHHHHHHHHHH-HHHHcCCCc
Confidence 56677788888 78998 8999999999999999 999998764
No 73
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=25.56 E-value=96 Score=30.23 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=35.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALM 59 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll 59 (312)
|.+..|||. -+..++..+.+++.++|+.|++= -|..++--+.++++
T Consensus 83 ~~~v~~~P~-~~~v~~~~~~~r~~~~D~IiavG-----------GGS~iD~AKaia~~ 128 (395)
T PRK15454 83 WPCPVGEPC-ITDVCAAVAQLRESGCDGVIAFG-----------GGSVLDAAKAVALL 128 (395)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCcCEEEEeC-----------ChHHHHHHHHHHHH
Confidence 667789998 47799999999999999888764 45566666665554
No 74
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.51 E-value=1.3e+02 Score=24.69 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=24.7
Q ss_pred HHHhcCCcEEEEe-----cCCCCeeEEEcCCCcccCh
Q 021442 21 AVLENNADLGVVF-----DTDVDRSGVVDNKGNPING 52 (312)
Q Consensus 21 ~v~~~~aDlGia~-----DgDgDR~~ivD~~G~~l~~ 52 (312)
.+.-++||+.||- -|.|.=+++.|++|++++.
T Consensus 88 aldis~ADlvIARGRLGvPGSGsmlVimD~rgRlLtA 124 (156)
T COG4019 88 ALDISKADLVIARGRLGVPGSGSMLVIMDERGRLLTA 124 (156)
T ss_pred hccccCCcEEEeeccccCCCCCcEEEEEccccceeee
Confidence 4566899999874 5777777888999997764
No 75
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=25.38 E-value=1.4e+02 Score=22.30 Aligned_cols=49 Identities=6% Similarity=-0.023 Sum_probs=33.8
Q ss_pred CcCceEEEEeecccCCceEEEEecCCCCccEEEEE-EeCChhhHHHHHHHHHHHHhhhcc
Q 021442 237 DARMYRAKVTDEEHGQYGWIHLRQSIHNPNIAVNV-QSMVPGGCRSITKSLRDKFLLASG 295 (312)
Q Consensus 237 ~~DGlki~~~~~~~~~~~wvliRpSgTEP~iriy~-Ea~~~~~a~~l~~~~~~~~~~~~~ 295 (312)
..-|+.+.+ . ++..-++|-+|| +|.+ -|++++.+++..+.+.. .|++.|
T Consensus 37 ~fpgl~~r~-~---~p~~t~~IF~sG-----ki~itGaks~~~~~~a~~~i~~-~L~~~~ 86 (86)
T PF00352_consen 37 RFPGLIYRL-R---NPKATVLIFSSG-----KIVITGAKSEEEAKKAIEKILP-ILQKLG 86 (86)
T ss_dssp TESSEEEEE-T---TTTEEEEEETTS-----EEEEEEESSHHHHHHHHHHHHH-HHHHTT
T ss_pred cCCeEEEee-c---CCcEEEEEEcCC-----EEEEEecCCHHHHHHHHHHHHH-HHHHcC
Confidence 445666665 0 124567777777 4555 45899999999999998 887654
No 76
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=25.10 E-value=1.5e+02 Score=21.43 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCccEEEEEEeCChhhHHHHHHHHHHHHhh
Q 021442 263 HNPNIAVNVQSMVPGGCRSITKSLRDKFLL 292 (312)
Q Consensus 263 TEP~iriy~Ea~~~~~a~~l~~~~~~~~~~ 292 (312)
.+|++++.+|+.++....++.+.+.. +.+
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~-l~~ 30 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQK-LSE 30 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHH-HHH
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHH-HHh
Confidence 37999999999999999999888887 544
No 77
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=24.87 E-value=1.2e+02 Score=20.88 Aligned_cols=27 Identities=4% Similarity=0.255 Sum_probs=22.5
Q ss_pred ccEEEEE-EeCChhhHHHHHHHHHHHHhh
Q 021442 265 PNIAVNV-QSMVPGGCRSITKSLRDKFLL 292 (312)
Q Consensus 265 P~iriy~-Ea~~~~~a~~l~~~~~~~~~~ 292 (312)
|.++|+. +++++++-+++.+.+.+ .+.
T Consensus 2 P~i~i~~~~Grs~EqK~~L~~~it~-a~~ 29 (60)
T PRK02289 2 PFVRIDLFEGRSQEQKNALAREVTE-VVS 29 (60)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH-HHH
Confidence 7888888 67899999999998888 444
No 78
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=24.30 E-value=61 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCcEEEEecCCCCe
Q 021442 17 LTRAAVLENNADLGVVFDTDVDR 39 (312)
Q Consensus 17 ~l~~~v~~~~aDlGia~DgDgDR 39 (312)
.+.+.+++.+|||||.|=|.|--
T Consensus 37 klGdvM~~e~Ad~GiSFCGSGGA 59 (115)
T PF14272_consen 37 KLGDVMKKENADFGISFCGSGGA 59 (115)
T ss_pred hHHHHHHhhCCCcceEEecCCCc
Confidence 36788999999999999877653
No 79
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=24.12 E-value=1.5e+02 Score=22.83 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=24.0
Q ss_pred ceEEEEecCCCCccEEEEEEeCChhhHHHHHHHHH
Q 021442 253 YGWIHLRQSIHNPNIAVNVQSMVPGGCRSITKSLR 287 (312)
Q Consensus 253 ~~wvliRpSgTEP~iriy~Ea~~~~~a~~l~~~~~ 287 (312)
.||+--+++| -+.|++|+++++ .+++.+.+.
T Consensus 33 ~G~V~N~~DG---sVeiva~G~~~~-v~~~~~~l~ 63 (92)
T COG1254 33 TGWVKNLDDG---SVEIVAEGPDEA-VEKFIEWLR 63 (92)
T ss_pred EEEEEECCCC---eEEEEEEcCHHH-HHHHHHHHH
Confidence 5899999999 488999998777 665555444
No 80
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=24.09 E-value=81 Score=19.16 Aligned_cols=19 Identities=21% Similarity=-0.123 Sum_probs=15.8
Q ss_pred EEEEecCCCCeeEEEcCCC
Q 021442 29 LGVVFDTDVDRSGVVDNKG 47 (312)
Q Consensus 29 lGia~DgDgDR~~ivD~~G 47 (312)
-|+++|++++|+...|..-
T Consensus 12 ~~la~d~~~~~lYw~D~~~ 30 (43)
T smart00135 12 NGLAVDWIEGRLYWTDWGL 30 (43)
T ss_pred CEEEEeecCCEEEEEeCCC
Confidence 4799999999998887654
No 81
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.67 E-value=61 Score=25.35 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCcEEEEecCCCCe
Q 021442 17 LTRAAVLENNADLGVVFDTDVDR 39 (312)
Q Consensus 17 ~l~~~v~~~~aDlGia~DgDgDR 39 (312)
.|.+.+++.+|||||.|=|.|--
T Consensus 37 klGdVM~~e~Ad~GiSFCGSGGA 59 (115)
T TIGR03577 37 KLGDVMKQENADLGISFCGSGGA 59 (115)
T ss_pred hHHHHHhhhcCccceEEecCCCc
Confidence 36788999999999999877653
No 82
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=23.49 E-value=1.2e+02 Score=29.29 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=36.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMS 60 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~ 60 (312)
|.+..|||. -+..+...+.+++.++|+.|++= -|..++--+.+++++
T Consensus 58 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavG-----------GGSviD~AK~ia~~~ 104 (375)
T cd08179 58 FEGVEPDPS-VETVLKGAEAMREFEPDWIIALG-----------GGSPIDAAKAMWIFY 104 (375)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC-----------CccHHHHHHHHHHHH
Confidence 677889998 47899999999999998777664 466777776666543
No 83
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=23.06 E-value=51 Score=23.58 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=12.0
Q ss_pred CceEEEEecCCCCc
Q 021442 252 QYGWIHLRQSIHNP 265 (312)
Q Consensus 252 ~~~wvliRpSgTEP 265 (312)
.+|.++||+|.+.|
T Consensus 20 ~~G~FLvR~s~~~~ 33 (77)
T PF00017_consen 20 PDGTFLVRPSSSKP 33 (77)
T ss_dssp STTEEEEEEESSST
T ss_pred CCCeEEEEeccccc
Confidence 68999999999865
No 84
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=23.01 E-value=1.6e+02 Score=24.63 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=18.7
Q ss_pred CCCCC-hHHHHHHHHHHHhcCCcEEEEecCCC
Q 021442 7 PNPED-KTAMALTRAAVLENNADLGVVFDTDV 37 (312)
Q Consensus 7 P~P~~-~~~l~~l~~~v~~~~aDlGia~DgDg 37 (312)
++|.. |..-..+.+.|.+..+|+||.+.|-|
T Consensus 36 ~~~~dYpd~a~~va~~V~~~~~~~GIliCGtG 67 (143)
T TIGR01120 36 SERTDYPHYAKQVALAVAGGEVDGGILICGTG 67 (143)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCceEEEEcCCc
Confidence 34433 55556666677777777776666544
No 85
>PRK15138 aldehyde reductase; Provisional
Probab=22.78 E-value=1.2e+02 Score=29.51 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=35.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMS 60 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~ 60 (312)
|.++.|||. .+..+...+.+++.++|+.|++= -|..++-=+..++++
T Consensus 62 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG-----------GGS~iD~AK~ia~~~ 108 (387)
T PRK15138 62 FGGIEPNPT-YETLMKAVKLVREEKITFLLAVG-----------GGSVLDGTKFIAAAA 108 (387)
T ss_pred ECCccCCCC-HHHHHHHHHHHHHcCCCEEEEeC-----------ChHHHHHHHHHHHHH
Confidence 667789998 57899999999999999887764 455666666665543
No 86
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=22.74 E-value=3.6e+02 Score=23.23 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=41.2
Q ss_pred EEecCCC---CeeEEEcCCCcccChhHHHHHHHHHHHHhCCCCEEEEcccCCHHHHHHHHHcCCcEEEeecchH
Q 021442 31 VVFDTDV---DRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGYR 101 (312)
Q Consensus 31 ia~DgDg---DR~~ivD~~G~~l~~d~~~~Ll~~~ll~~~~~~~Vv~~v~sS~~l~~ia~~~G~~v~~t~vG~~ 101 (312)
+++|-|| |--..+|++|+.+..-.+.-=+.--++.......-+.|-.-|.++++-++.+|++.++.-+-.|
T Consensus 11 li~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~~dK 84 (170)
T COG1778 11 LILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGISDK 84 (170)
T ss_pred EEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeechHhH
Confidence 4566665 3345567887533322111111112222223334566788999999999999999888744443
No 87
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=22.56 E-value=1.3e+02 Score=29.18 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=34.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMS 60 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~ 60 (312)
|.+..|||+ -++.....+.+++.++|+.|++= -|..++-=+..++++
T Consensus 61 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG-----------GGS~iD~aK~ia~~~ 107 (383)
T cd08186 61 YNKVTPNPT-VDQVDEAAKLGREFGAQAVIAIG-----------GGSPIDSAKSAAILL 107 (383)
T ss_pred eCCCCCCCC-HHHHHHHHHHHHHcCCCEEEEeC-----------CccHHHHHHHHHHHH
Confidence 777889998 47899999999999998766654 456666666655543
No 88
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=22.46 E-value=2.4e+02 Score=22.76 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=28.0
Q ss_pred EEEEEEeCC--hhhHHHHHHHHHHHHhhhcccc--cccchhhHHHHhh
Q 021442 267 IAVNVQSMV--PGGCRSITKSLRDKFLLASGMD--KVLDISQIEKYAE 310 (312)
Q Consensus 267 iriy~Ea~~--~~~a~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 310 (312)
.+|+++|.+ .+.+++-.+.+.. ++...-.. -.++--||.+.|.
T Consensus 68 lhV~I~a~~~~~e~~~~A~~~I~~-ll~~~~~~~~~~~k~~ql~~la~ 114 (120)
T cd02395 68 LHVLITAETPPEEALAKAVEAIEE-LLKPAIEGGNDELKREQLRELAL 114 (120)
T ss_pred cEEEEEeCCcHHHHHHHHHHHHHH-HhccCCCccchHHHHHHHHHHHH
Confidence 789999988 6666666665555 66654221 3367777777664
No 89
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=22.35 E-value=1.3e+02 Score=22.90 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=23.2
Q ss_pred cEEEEEEeCChhhHHHHHHHHHHHHhhh
Q 021442 266 NIAVNVQSMVPGGCRSITKSLRDKFLLA 293 (312)
Q Consensus 266 ~iriy~Ea~~~~~a~~l~~~~~~~~~~~ 293 (312)
.|.+-+|+.|.+.|++.++++++|+|.+
T Consensus 42 ~~el~ld~~~~e~a~~~v~~mcekLLaN 69 (83)
T COG1828 42 VIELELDAESEEKAEEEVKEMCEKLLAN 69 (83)
T ss_pred EEEEEecCcchhHHHHHHHHHHHHHhCC
Confidence 3566788889999999999999977755
No 90
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.84 E-value=1.3e+02 Score=29.06 Aligned_cols=47 Identities=30% Similarity=0.404 Sum_probs=35.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMS 60 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll~ 60 (312)
|.++.|||.. ++.+...+.+++.++|+.|++= -|..++-=+.+++++
T Consensus 60 ~~~v~~~p~~-~~v~~~~~~~~~~~~D~IiavG-----------GGS~iD~aK~ia~~~ 106 (380)
T cd08185 60 FDKVEPNPTT-TTVMEGAALAREEGCDFVVGLG-----------GGSSMDTAKAIAFMA 106 (380)
T ss_pred eCCccCCCCH-HHHHHHHHHHHHcCCCEEEEeC-----------CccHHHHHHHHHHHh
Confidence 6677899984 7888899999999998877764 456666666665543
No 91
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=21.61 E-value=1.3e+02 Score=28.66 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=34.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALM 59 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll 59 (312)
|.+..|||+. +....+.+.+++.++|+.|++= -|..++-=+..+++
T Consensus 60 ~~~v~~~p~~-~~v~~~~~~~~~~~~D~IIavG-----------GGSviD~aK~ia~~ 105 (357)
T cd08181 60 FDEVEENPSL-ETIMEAVEIAKKFNADFVIGIG-----------GGSPLDAAKAIAVL 105 (357)
T ss_pred eCCCCCCcCH-HHHHHHHHHHHhcCCCEEEEeC-----------CchHHHHHHHHHHH
Confidence 6677899984 7899999999999998877764 44555555555543
No 92
>PRK02991 D-serine dehydratase; Provisional
Probab=21.48 E-value=6.5e+02 Score=25.03 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=32.3
Q ss_pred CCEEEEcccCCHHHHHHHHHcCCcEEEeecchHHHHHHHh
Q 021442 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGV 108 (312)
Q Consensus 69 ~~~Vv~~v~sS~~l~~ia~~~G~~v~~t~vG~~~i~~~~~ 108 (312)
...|++|-.+|..-.+.++.+|++|+.+..++..-.+.++
T Consensus 182 ~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~~~~a~~~A~ 221 (441)
T PRK02991 182 KVTVHMSADARQWKKDKLRSHGVTVVEYEGDYGVAVEEGR 221 (441)
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHH
Confidence 3579999999999999999999999999877654444433
No 93
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.82 E-value=45 Score=24.96 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=22.8
Q ss_pred EEEEEeCChhhHHHHHHHHHHHHhhhcccccccchhhHH
Q 021442 268 AVNVQSMVPGGCRSITKSLRDKFLLASGMDKVLDISQIE 306 (312)
Q Consensus 268 riy~Ea~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 306 (312)
.||+||.++....+..+.+.. ++.. ..+.+.++.++
T Consensus 46 yIyVEA~~~~~V~~ai~gi~~--i~~~-~~~~vp~~E~~ 81 (84)
T PF03439_consen 46 YIYVEAERESDVKEAIRGIRH--IRGS-RPGLVPIEEME 81 (84)
T ss_dssp EEEEEESSHHHHHHHHTT-TT--EEEE-CCEEB-GGGTC
T ss_pred EEEEEeCCHHHHHHHHhcccc--eeec-cceeECHHHHH
Confidence 689999999998888776666 4333 24445555444
No 94
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=20.79 E-value=1.4e+02 Score=28.65 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=34.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALM 59 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll 59 (312)
|.+..|||+ -++++.+.+.+++.++|+.|++= -|..++--+..+++
T Consensus 62 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavG-----------GGS~iD~aK~ia~~ 107 (377)
T cd08176 62 YDGVKPNPT-ITNVKDGLAVFKKEGCDFIISIG-----------GGSPHDCAKAIGIV 107 (377)
T ss_pred eCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEeC-----------CcHHHHHHHHHHHH
Confidence 667789998 47899999999999998777664 45666666666654
No 95
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=20.75 E-value=1.5e+02 Score=20.05 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=14.7
Q ss_pred EEEEEeCChhhHHHHHHH
Q 021442 268 AVNVQSMVPGGCRSITKS 285 (312)
Q Consensus 268 riy~Ea~~~~~a~~l~~~ 285 (312)
.+++||.|++.|.++++.
T Consensus 13 ~V~VeA~s~eeA~~~v~~ 30 (48)
T PF14207_consen 13 VVTVEAESEEEAIEKVRD 30 (48)
T ss_pred EEEEEeCCHHHHHHHHHH
Confidence 478899999999887764
No 96
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=20.51 E-value=1.7e+02 Score=19.77 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=20.8
Q ss_pred ccEEEEE-EeCChhhHHHHHHHHHHHHhhhccc
Q 021442 265 PNIAVNV-QSMVPGGCRSITKSLRDKFLLASGM 296 (312)
Q Consensus 265 P~iriy~-Ea~~~~~a~~l~~~~~~~~~~~~~~ 296 (312)
|.|+|.+ ++.|.++-+++++.+.+-+.+.+|.
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~~lg~ 33 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVEVLGI 33 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHHHHTS
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 6777766 4568899999999888833333444
No 97
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=20.39 E-value=1.4e+02 Score=28.96 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=34.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCeeEEEcCCCcccChhHHHHHH
Q 021442 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALM 59 (312)
Q Consensus 2 Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDgDR~~ivD~~G~~l~~d~~~~Ll 59 (312)
|++..|||+ -+..+...+.+++.++|+.|++= -|..++--+..+++
T Consensus 55 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG-----------GGS~iD~AK~iA~~ 100 (398)
T cd08178 55 FSDVEPDPS-LETVRKGLELMNSFKPDTIIALG-----------GGSPMDAAKIMWLF 100 (398)
T ss_pred ecCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC-----------CccHHHHHHHHHHH
Confidence 777899998 47888889999999988776664 45566666665554
No 98
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=20.18 E-value=2e+02 Score=19.54 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=24.6
Q ss_pred ccEEEEEE--eCChhhHHHHHHHHHHHHhhhccccc
Q 021442 265 PNIAVNVQ--SMVPGGCRSITKSLRDKFLLASGMDK 298 (312)
Q Consensus 265 P~iriy~E--a~~~~~a~~l~~~~~~~~~~~~~~~~ 298 (312)
|.++|.+- ..++++.+++.+.+.+.+...+|.+.
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~~ 36 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMAETLGANL 36 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 67777665 58999999999999884444445543
No 99
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=20.04 E-value=5.4e+02 Score=21.72 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCcEEEEecCC
Q 021442 15 MALTRAAVLENNADLGVVFDTD 36 (312)
Q Consensus 15 l~~l~~~v~~~~aDlGia~DgD 36 (312)
++.|.......+..+.++|||-
T Consensus 32 i~~L~~y~~~~~~~v~VVFDa~ 53 (166)
T PF05991_consen 32 IEMLSEYAQFSGYEVIVVFDAY 53 (166)
T ss_pred HHHHHHHhcccCCEEEEEEeCC
Confidence 4445555556778899999974
Done!