Query 021443
Match_columns 312
No_of_seqs 203 out of 987
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1563 Mitochondrial protein 100.0 2.4E-42 5.1E-47 319.1 18.6 179 70-287 58-239 (288)
2 COG3346 Uncharacterized conser 100.0 1.2E-39 2.6E-44 302.2 19.6 170 74-285 19-195 (252)
3 PF02104 SURF1: SURF1 family; 100.0 6.7E-37 1.5E-41 276.3 19.0 171 76-286 2-179 (212)
4 cd06662 SURF1 SURF1 superfamil 100.0 3E-33 6.5E-38 249.5 16.9 154 82-279 1-157 (202)
5 COG4578 GutM Glucitol operon a 82.8 0.92 2E-05 38.9 2.3 30 69-98 9-38 (128)
6 PF12273 RCR: Chitin synthesis 52.6 7.3 0.00016 32.8 1.2 24 69-92 1-24 (130)
7 COG3012 Uncharacterized protei 34.2 49 0.0011 29.2 3.4 34 233-267 90-127 (151)
8 COG3768 Predicted membrane pro 32.4 68 0.0015 31.8 4.5 16 30-45 20-39 (350)
9 PRK00183 hypothetical protein; 29.9 56 0.0012 29.0 3.2 33 234-267 92-128 (157)
10 PF11293 DUF3094: Protein of u 29.3 69 0.0015 23.7 3.0 27 66-92 27-53 (55)
11 PF10883 DUF2681: Protein of u 29.0 1.2E+02 0.0025 24.5 4.6 19 78-96 13-31 (87)
12 PF04375 HemX: HemX; InterPro 28.7 1.7E+02 0.0038 29.0 6.8 10 81-90 41-50 (372)
13 PRK06975 bifunctional uroporph 25.0 2.1E+02 0.0045 30.8 7.0 7 14-20 238-244 (656)
14 PTZ00370 STEVOR; Provisional 23.0 62 0.0013 31.6 2.3 38 62-99 251-290 (296)
15 PRK01752 hypothetical protein; 21.9 1E+02 0.0022 27.3 3.3 33 234-267 93-129 (156)
16 PF06724 DUF1206: Domain of Un 21.7 75 0.0016 23.8 2.2 28 66-96 44-71 (73)
17 KOG1691 emp24/gp25L/p24 family 21.4 61 0.0013 30.2 1.9 27 73-99 180-209 (210)
18 PF14316 DUF4381: Domain of un 21.3 1.2E+02 0.0026 25.9 3.6 11 95-105 50-60 (146)
19 PRK01842 hypothetical protein; 20.7 1E+02 0.0022 27.2 3.1 33 234-266 108-144 (149)
20 PF06864 PAP_PilO: Pilin acces 20.6 1.5E+02 0.0032 29.8 4.6 19 84-102 180-198 (414)
21 PRK10234 DNA-binding transcrip 20.3 1.5E+02 0.0033 25.1 3.9 19 80-98 14-32 (118)
No 1
>KOG1563 consensus Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase [Energy production and conversion]
Probab=100.00 E-value=2.4e-42 Score=319.13 Aligned_cols=179 Identities=36% Similarity=0.603 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccc
Q 021443 70 WSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPR 149 (312)
Q Consensus 70 w~~lll~l~~~v~~~LG~WQl~R~~wK~~Lia~ie~r~~a~Pv~L~~~~~~~~~~~~~eyRrV~v~G~f~~~~~ilV~~R 149 (312)
.+.++++++.++.|+||+||+.|++||.++|+.++++++++|++|++.. .+.+++|||||.++|.|+|+++++|+||
T Consensus 58 ~l~~ll~liPittFgLGtWQvkRlkWK~~lI~~l~~rL~~~pi~LP~~~---~~l~~lEyrrV~~rG~F~H~kEm~vgPR 134 (288)
T KOG1563|consen 58 FLAWLLLLIPITTFGLGTWQVKRLKWKLELIASLKQRLEQEPIPLPKDL---DDLEGLEYRRVKLRGIFLHDKEMYVGPR 134 (288)
T ss_pred hHHHHHHHhhhheeeccceeehhHHHHHHHHHHHHhhhcCCCccCCCCh---hHhcccceEEEEEEEEEcccceEEeccc
Confidence 3445777788999999999999999999999999999999999998875 2578999999999999999999999999
Q ss_pred cccCCCCCcccEEEEeEeeecCCCCCCCCccEEEEeecccCCCCCCCcccccCCCCcCCCCcccccccccchhhhhccCC
Q 021443 150 SRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKP 229 (312)
Q Consensus 150 ~~~~~G~g~~Gy~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~sw~~fw~~~p 229 (312)
.+...+..+.||+|+|||.++|. +..|||||||||...-++..+. +
T Consensus 135 ~r~~~~g~~~Gy~vvTPF~~~d~-----g~~ILVNRGWvp~~~v~petR~-----------------------------~ 180 (288)
T KOG1563|consen 135 TRSGPKGSEIGYYVVTPFILDDN-----GSIILVNRGWVPRKKVEPETRY-----------------------------P 180 (288)
T ss_pred cccCCCCcccceEEeeeeEECCC-----CCEEEEecCccchhhcCccccc-----------------------------c
Confidence 98744434578999999999875 2699999999999655442221 2
Q ss_pred cccccceEEEEEEEecccccccccCCCCC---CCeeeeeCHHHHHHhcCCCceEEeeecch
Q 021443 230 NIVEKLLVLFVGVRSQAFLYQQMIQAPVN---GSMWMFLQLLVLVGSLKTLSILRTPMKMS 287 (312)
Q Consensus 230 ~~~p~g~VtV~GvlR~~E~~~~~~f~p~n---~~~w~~iDl~~ma~~lg~~pi~~~a~~~~ 287 (312)
...++|+|+|+|+||++| +++.|++.| +|.|||+|+++||++.|++||+|||.|.+
T Consensus 181 ~~~~~~~v~l~gvVRk~e--~r~~f~~~n~pe~~~w~y~Dl~~mA~~~G~~Pi~ida~y~~ 239 (288)
T KOG1563|consen 181 SGQPEGHVELVGVVRKTE--TRPQFTPVNKPESNVWYYRDLPKMARATGTEPILIDALYDD 239 (288)
T ss_pred cCCccceEEEEEEEecCC--CCCCcccccCCcccceeecCHHHHHHHcCCCceEeecccCc
Confidence 225678999999999999 999999999 79999999999999999999999998874
No 2
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-39 Score=302.22 Aligned_cols=170 Identities=26% Similarity=0.384 Sum_probs=145.8
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccccccC
Q 021443 74 LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSI 153 (312)
Q Consensus 74 ll~l~~~v~~~LG~WQl~R~~wK~~Lia~ie~r~~a~Pv~L~~~~~~~~~~~~~eyRrV~v~G~f~~~~~ilV~~R~~~~ 153 (312)
+.++.++++++||+||++|++||+++|+++|++.++||+++++........++.+||||+++|+|+|++++++++|..+
T Consensus 19 l~~~~~~il~~LGtWQl~Rl~wK~~lia~ie~r~~appv~l~~~~~~~~~~~~~eyrrV~ltG~fl~~~e~l~~~r~~~- 97 (252)
T COG3346 19 LVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKLLDWADSGADLEYRRVTLTGTFLHDKEVLLYARVTE- 97 (252)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcccccchhhcCcccceEEEEEEEEEcCCceEEEeeeeec-
Confidence 4445557778999999999999999999999999999999999876433334489999999999999999999999864
Q ss_pred CCCCcccEEEEeEeeecCCCCCCCCccEEEEeecccCCCCCCCcccccCCCCcCCCCcccccccccchhhhhccCCcccc
Q 021443 154 SGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVE 233 (312)
Q Consensus 154 ~G~g~~Gy~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~sw~~fw~~~p~~~p 233 (312)
| ++||||+|||.+++| +.|||||||||.+.++..++.. . .+
T Consensus 98 -g--~~Gy~VlTPf~~~dG------~~VLVnRG~vp~e~~~~~~r~~-----------------------------~-~~ 138 (252)
T COG3346 98 -G--GPGYEVLTPFALDDG------RTVLVNRGFVPRERKEASPRAE-----------------------------G-QP 138 (252)
T ss_pred -C--CccEEEecccEecCC------cEEEEeCCcccCcccCCCCCCC-----------------------------C-CC
Confidence 4 899999999999887 7999999999999887765431 1 23
Q ss_pred cceEEEEEEEecccccccccCCCCC---CCeeeeeCHHHHHHhcCCC----ceEEeeec
Q 021443 234 KLLVLFVGVRSQAFLYQQMIQAPVN---GSMWMFLQLLVLVGSLKTL----SILRTPMK 285 (312)
Q Consensus 234 ~g~VtV~GvlR~~E~~~~~~f~p~n---~~~w~~iDl~~ma~~lg~~----pi~~~a~~ 285 (312)
.|+|+|+|++|++| +.+.|.|.| .++||++|+++||+..|.. |.+++|-.
T Consensus 139 ~g~v~I~Gl~r~~e--~~~~~l~~nd~~~~~~y~~d~~~~A~~~gl~~~~~~~~v~ae~ 195 (252)
T COG3346 139 AGPVTITGLLRPPE--PGGSLLPDNDPGKNLWYSIDLAAFAQATGLPDLLAPYFVDAEG 195 (252)
T ss_pred CCcEEEEEEEecCC--CccccCcccCcccCeeeeccHHHHHhhcCCCcccceeEEecCC
Confidence 48999999999999 778999998 8999999999999999976 66777643
No 3
>PF02104 SURF1: SURF1 family; InterPro: IPR002994 The surfeit locus 1 gene (SURF1 or surf-1) encodes a conserved protein of about 300 amino-acid residues that seems to be involved in the biogenesis of cytochrome c oxidase []. Vertebrate SURF1 is evolutionary related to yeast protein SHY1. There seems to be two transmembrane regions in these proteins, one in the N-terminal, the other in the C-terminal. Rickettsia prowazekii protein RP733 is also a member of this protein family.; GO: 0016020 membrane
Probab=100.00 E-value=6.7e-37 Score=276.31 Aligned_cols=171 Identities=29% Similarity=0.389 Sum_probs=144.3
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccccccCCC
Q 021443 76 FLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISG 155 (312)
Q Consensus 76 ~l~~~v~~~LG~WQl~R~~wK~~Lia~ie~r~~a~Pv~L~~~~~~~~~~~~~eyRrV~v~G~f~~~~~ilV~~R~~~~~G 155 (312)
++++++|++||+||++|++||++++++++++.+++|+++++....+...++.+||+|+++|+|++++++||+||.++ |
T Consensus 2 l~~~~~~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~~~~~~~~~r~V~~~G~~~~~~~~ll~~r~~~--g 79 (212)
T PF02104_consen 2 LLAIALLVGLGFWQLDRAQWKQALIARIEARLSAPPVPLPDLLDPDALPEDLEYRRVTVSGRFDPEKQILLDNRSRD--G 79 (212)
T ss_pred ChHHHHHHHHCHHHhCHHHHHHHHHHHHHHHhhCCCcCCccccccccCccccCceEEEEEEEECCCceEEEeccccC--C
Confidence 35567889999999999999999999999999999999998863223456899999999999999999999999984 4
Q ss_pred CCcccEEEEeEeeecCCCCCCCCccEEEEeecccCCCCCCC-cccccCCCCcCCCCcccccccccchhhhhccCCccccc
Q 021443 156 VTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKS-SEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEK 234 (312)
Q Consensus 156 ~g~~Gy~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~-~~~~~~~~~~~~~p~~~~~~~q~sw~~fw~~~p~~~p~ 234 (312)
+.||+|+|||++++| ..|||||||||.+..++. .+. ..|+ .+.
T Consensus 80 --~~Gy~Vltp~~~~dg------~~vlVnRGWvp~~~~~~~~~p~--------~~p~--------------------~~~ 123 (212)
T PF02104_consen 80 --RPGYHVLTPFRLDDG------RAVLVNRGWVPAEAADRAALPE--------QVPA--------------------PPS 123 (212)
T ss_pred --CceEEEEEEEEecCC------cEEEEEecccccccCCcccccc--------cccC--------------------CCC
Confidence 999999999999866 699999999998855442 211 0111 346
Q ss_pred ceEEEEEEEeccccccc-ccCCCCC---CCeeeeeCHHHHHHhcC--CCceEEeeecc
Q 021443 235 LLVLFVGVRSQAFLYQQ-MIQAPVN---GSMWMFLQLLVLVGSLK--TLSILRTPMKM 286 (312)
Q Consensus 235 g~VtV~GvlR~~E~~~~-~~f~p~n---~~~w~~iDl~~ma~~lg--~~pi~~~a~~~ 286 (312)
|+++|+|++|.+| .+ +.|++.| .+.|+++|+++|++.+| ..|++|+....
T Consensus 124 g~~~v~G~l~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~a~~~g~~~~p~~l~~~~~ 179 (212)
T PF02104_consen 124 GEVTVTGRLRPPE--PRGGIFTPENDPEPNRWQSIDLEAMAQALGLPLAPFYLQQDAD 179 (212)
T ss_pred ceEEEEEEEECCC--CcCCcCccCCCCCCceEEecCHHHHHHHhCCCCCCeEEEeccC
Confidence 8899999999998 66 5788876 89999999999999999 78999997655
No 4
>cd06662 SURF1 SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.
Probab=100.00 E-value=3e-33 Score=249.47 Aligned_cols=154 Identities=28% Similarity=0.399 Sum_probs=132.7
Q ss_pred HhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccccccCCCCCcccE
Q 021443 82 SFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGY 161 (312)
Q Consensus 82 ~~~LG~WQl~R~~wK~~Lia~ie~r~~a~Pv~L~~~~~~~~~~~~~eyRrV~v~G~f~~~~~ilV~~R~~~~~G~g~~Gy 161 (312)
|++||+||++|++||+++|++++++.+++|+++++..... .++.+||+|+++|+|+++++++++||.++ | +.||
T Consensus 1 ~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~--~~~~~~r~V~v~G~~~~~~~~ll~~r~~~--g--~~Gy 74 (202)
T cd06662 1 LVGLGFWQLQRAEWKEALIARIEARLAAPPVPLPELLAPP--LEDLEYRRVTVTGTFLPEKEVLLDNRTRD--G--RPGY 74 (202)
T ss_pred CccccHHHHhHHHHHHHHHHHHHHHhcCCCCCCCcccccc--ccccceEEEEEEEEECCCCEEEEeccccC--C--CCce
Confidence 6799999999999999999999999999999999876422 56789999999999999999999999974 4 8999
Q ss_pred EEEeEeeecCCCCCCCCccEEEEeecccCCCCCCCcccccCCCCcCCCCcccccccccchhhhhccCCcccccceEEEEE
Q 021443 162 YVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEKLLVLFVG 241 (312)
Q Consensus 162 ~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~sw~~fw~~~p~~~p~g~VtV~G 241 (312)
+|++||++++| +.|||||||||.+..+..++. ...|.++++|+|
T Consensus 75 ~vl~p~~~~~g------~~ilVnrGwv~~~~~~~~~~~------------------------------~~~p~g~~~v~G 118 (202)
T cd06662 75 EVLTPFRLDDG------RTVLVNRGWVPADADRPALPA------------------------------VAPPTGEVTVTG 118 (202)
T ss_pred EEEeeeEECCC------CEEEEECCCCCCCccCcccCC------------------------------CCCCCccEEEEE
Confidence 99999999876 689999999999866553321 014678999999
Q ss_pred EEecccccccccCCCCC---CCeeeeeCHHHHHHhcCCCce
Q 021443 242 VRSQAFLYQQMIQAPVN---GSMWMFLQLLVLVGSLKTLSI 279 (312)
Q Consensus 242 vlR~~E~~~~~~f~p~n---~~~w~~iDl~~ma~~lg~~pi 279 (312)
++|.+| .++.+.+.+ .+.|+++|+++|++++|..++
T Consensus 119 ~l~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 157 (202)
T cd06662 119 RLRPPE--PRGLFLPPNDPAANPWQNRDLEAMAQALGLPLV 157 (202)
T ss_pred EEecCC--CCCCcCCCCCcccccccccCHHHHHHHHCCCCC
Confidence 999999 877777765 778999999999999998533
No 5
>COG4578 GutM Glucitol operon activator [Transcription]
Probab=82.77 E-value=0.92 Score=38.92 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 021443 69 TWSKWLLFLPGAISFGLGTWQIFRRQDKIK 98 (312)
Q Consensus 69 ~w~~lll~l~~~v~~~LG~WQl~R~~wK~~ 98 (312)
.|++.+++++-.+++.||-||+.|.+.--.
T Consensus 9 ~~lI~~~vi~w~~q~algwwQ~srfq~af~ 38 (128)
T COG4578 9 PALIALAVIAWCAQLALGWWQWSRFQSAFG 38 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555556667789999999999887654
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=52.63 E-value=7.3 Score=32.80 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhh
Q 021443 69 TWSKWLLFLPGAISFGLGTWQIFR 92 (312)
Q Consensus 69 ~w~~lll~l~~~v~~~LG~WQl~R 92 (312)
+|++++++|++++++.+++.-..|
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555544455444444
No 7
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.18 E-value=49 Score=29.22 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=24.2
Q ss_pred ccceEEEEEEEecccc----cccccCCCCCCCeeeeeCH
Q 021443 233 EKLLVLFVGVRSQAFL----YQQMIQAPVNGSMWMFLQL 267 (312)
Q Consensus 233 p~g~VtV~GvlR~~E~----~~~~~f~p~n~~~w~~iDl 267 (312)
..+.|+++++.+..+. -.++.|+.. +++|||||-
T Consensus 90 ~~~~VeF~A~f~~~~~~~a~~ErSrFvk~-ngrWyyiDg 127 (151)
T COG3012 90 NHGFVEFVARFKGGGKTGAHHERSRFVKI-NGRWYYIDG 127 (151)
T ss_pred cceeEEEEEEEccCCccchhhhhhhheEE-CCEEEEECC
Confidence 3467999999987651 134556655 599999994
No 8
>COG3768 Predicted membrane protein [Function unknown]
Probab=32.40 E-value=68 Score=31.81 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=11.7
Q ss_pred cCCcccccc----ccccccC
Q 021443 30 RAPPRLYSS----SAAAALS 45 (312)
Q Consensus 30 ~~~~~~~~~----~~~~~~~ 45 (312)
|++||.|.+ ++++..+
T Consensus 20 ~r~~r~f~~~~~~~~pa~~D 39 (350)
T COG3768 20 FRAPREFDEDAENFTPAELD 39 (350)
T ss_pred ccCccccchHHHhcCccccc
Confidence 889999996 5654444
No 9
>PRK00183 hypothetical protein; Provisional
Probab=29.87 E-value=56 Score=28.98 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=22.7
Q ss_pred cceEEEEEEEeccc----ccccccCCCCCCCeeeeeCH
Q 021443 234 KLLVLFVGVRSQAF----LYQQMIQAPVNGSMWMFLQL 267 (312)
Q Consensus 234 ~g~VtV~GvlR~~E----~~~~~~f~p~n~~~w~~iDl 267 (312)
.|.|++.+..+... +..++.|... +++|||+|=
T Consensus 92 ~g~VeF~A~y~~~g~~~~lhE~S~F~r~-~g~W~YvDG 128 (157)
T PRK00183 92 HAFVTFTARWHDADGEHSHRERSAFVQH-QGRWYFIDP 128 (157)
T ss_pred eEEEEEEEEEecCCCccceeeeeeeeEe-CCEEEeccc
Confidence 47899999987543 1134455554 699999994
No 10
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.34 E-value=69 Score=23.72 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=13.0
Q ss_pred CCchHHHHHHHHHHHHHhhcchhhhhh
Q 021443 66 PSSTWSKWLLFLPGAISFGLGTWQIFR 92 (312)
Q Consensus 66 ~~~~w~~lll~l~~~v~~~LG~WQl~R 92 (312)
|.++|.++++++++++.++|=.|=+.|
T Consensus 27 PFrP~~Ll~~li~Vv~gl~llS~ll~~ 53 (55)
T PF11293_consen 27 PFRPWRLLIVLIVVVIGLGLLSRLLSR 53 (55)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666555554444444443444433
No 11
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=29.04 E-value=1.2e+02 Score=24.53 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=13.5
Q ss_pred HHHHHhhcchhhhhhHHHH
Q 021443 78 PGAISFGLGTWQIFRRQDK 96 (312)
Q Consensus 78 ~~~v~~~LG~WQl~R~~wK 96 (312)
++++.++...||+.+++..
T Consensus 13 v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 13 VVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344457788999988876
No 12
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=28.71 E-value=1.7e+02 Score=28.97 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=4.9
Q ss_pred HHhhcchhhh
Q 021443 81 ISFGLGTWQI 90 (312)
Q Consensus 81 v~~~LG~WQl 90 (312)
+.++.|.|.+
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 3345556644
No 13
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.02 E-value=2.1e+02 Score=30.77 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=3.7
Q ss_pred hhhhhcc
Q 021443 14 KTLTKLG 20 (312)
Q Consensus 14 ~~~~~~~ 20 (312)
+++.++|
T Consensus 238 ~~a~~~G 244 (656)
T PRK06975 238 EQARALG 244 (656)
T ss_pred HHHHHcC
Confidence 4555555
No 14
>PTZ00370 STEVOR; Provisional
Probab=22.98 E-value=62 Score=31.58 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=27.2
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhcchhhhhhHH--HHHHH
Q 021443 62 KGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQ--DKIKM 99 (312)
Q Consensus 62 ~~~~~~~~w~~lll~l~~~v~~~LG~WQl~R~~--wK~~L 99 (312)
++-|.+=....++++++.++++.|=.|-..|+. ||.+-
T Consensus 251 saaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~ 290 (296)
T PTZ00370 251 SSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHEC 290 (296)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 444545455556777777888899999999876 88753
No 15
>PRK01752 hypothetical protein; Provisional
Probab=21.92 E-value=1e+02 Score=27.31 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=21.8
Q ss_pred cceEEEEEEEeccc----ccccccCCCCCCCeeeeeCH
Q 021443 234 KLLVLFVGVRSQAF----LYQQMIQAPVNGSMWMFLQL 267 (312)
Q Consensus 234 ~g~VtV~GvlR~~E----~~~~~~f~p~n~~~w~~iDl 267 (312)
.|.|++.+..+... +...+-|.-. +++|+|+|=
T Consensus 93 ~g~VeF~A~y~~~g~~~~~hE~S~F~r~-~g~W~YvDG 129 (156)
T PRK01752 93 HSAVEFKAIFQGEEGEQAHHERSLFVKI-DNRWYFVDP 129 (156)
T ss_pred eEEEEEEEEEecCCCccccchhhhheec-cCCEEEecC
Confidence 47899999986532 1123344444 699999994
No 16
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=21.69 E-value=75 Score=23.85 Aligned_cols=28 Identities=32% Similarity=0.595 Sum_probs=19.5
Q ss_pred CCchHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 021443 66 PSSTWSKWLLFLPGAISFGLGTWQIFRRQDK 96 (312)
Q Consensus 66 ~~~~w~~lll~l~~~v~~~LG~WQl~R~~wK 96 (312)
|.++| ++.++.+.++..|.||+-++-.+
T Consensus 44 p~G~~---ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 44 PFGRW---LLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred CCcHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34554 45566677788999999886554
No 17
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.43 E-value=61 Score=30.17 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhcchhhhh---hHHHHHHH
Q 021443 73 WLLFLPGAISFGLGTWQIF---RRQDKIKM 99 (312)
Q Consensus 73 lll~l~~~v~~~LG~WQl~---R~~wK~~L 99 (312)
++-++.+++|++|+.||+- |..+|..|
T Consensus 180 ~fSi~Sl~v~~~va~~QvlyLK~fF~kKKL 209 (210)
T KOG1691|consen 180 WFSILSLVVLLSVAGWQVLYLKRFFQKKKL 209 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4555666788899999964 44555544
No 18
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.33 E-value=1.2e+02 Score=25.86 Aligned_cols=11 Identities=9% Similarity=-0.058 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 021443 95 DKIKMLEYRQN 105 (312)
Q Consensus 95 wK~~Lia~ie~ 105 (312)
.|++-++++++
T Consensus 50 yrr~Al~~L~~ 60 (146)
T PF14316_consen 50 YRREALRELAQ 60 (146)
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 19
>PRK01842 hypothetical protein; Provisional
Probab=20.69 E-value=1e+02 Score=27.15 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=23.0
Q ss_pred cceEEEEEEEeccc----ccccccCCCCCCCeeeeeC
Q 021443 234 KLLVLFVGVRSQAF----LYQQMIQAPVNGSMWMFLQ 266 (312)
Q Consensus 234 ~g~VtV~GvlR~~E----~~~~~~f~p~n~~~w~~iD 266 (312)
.|.|++....+.+. +..++-|...++|.|+|+|
T Consensus 108 ~G~VeF~A~y~~~g~~~~lhErS~F~r~~~G~W~YvD 144 (149)
T PRK01842 108 HAEVEFVARYKVGGRAHRLHETSRFVRDEQGRWRYVD 144 (149)
T ss_pred eEEEEEEEEEecCCCeEEEEEeeeeEECCCCeEEEeC
Confidence 47899999886543 1235567764248999999
No 20
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=20.63 E-value=1.5e+02 Score=29.82 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=8.9
Q ss_pred hcchhhhhhHHHHHHHHHH
Q 021443 84 GLGTWQIFRRQDKIKMLEY 102 (312)
Q Consensus 84 ~LG~WQl~R~~wK~~Lia~ 102 (312)
+-|.|.+++.++|+++.++
T Consensus 180 ~~g~~~~~~~~~~~~~~a~ 198 (414)
T PF06864_consen 180 GYGWWYWQAQQEEARRAAA 198 (414)
T ss_pred HHHHHHhhhhhhHHHHHHH
Confidence 3345455555455444433
No 21
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=20.26 E-value=1.5e+02 Score=25.06 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=13.7
Q ss_pred HHHhhcchhhhhhHHHHHH
Q 021443 80 AISFGLGTWQIFRRQDKIK 98 (312)
Q Consensus 80 ~v~~~LG~WQl~R~~wK~~ 98 (312)
++=+.||.||+.+...--+
T Consensus 14 llQ~~lg~~Qik~Fn~~~~ 32 (118)
T PRK10234 14 CAQLALGGWQISRFNRAFD 32 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3347899999998765443
Done!