Query 021443
Match_columns 312
No_of_seqs 203 out of 987
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 39.1 15 0.00052 22.7 1.7 28 67-94 3-30 (32)
2 2jq5_A SEC-C motif; structural 16.4 53 0.0018 26.9 1.5 31 235-266 88-123 (128)
3 1rpb_A Tricyclic peptide RP 71 7.0 99 0.0034 18.3 0.0 9 302-310 1-9 (26)
4 3kkg_A Putative snoal-like pol 6.2 2.9E+02 0.0099 21.1 2.4 20 259-278 125-144 (146)
5 2i9w_A Hypothetical protein; c 6.1 1.9E+02 0.0066 25.1 1.4 35 234-268 114-157 (184)
6 3syn_E ATP-binding protein YLX 5.7 4E+02 0.014 15.2 2.1 19 89-107 2-20 (23)
7 4gac_A Alcohol dehydrogenase [ 5.7 2.1E+02 0.0072 25.6 1.5 16 83-98 16-31 (324)
8 2knc_B Integrin beta-3; transm 5.6 8.9E+02 0.03 17.7 5.3 10 80-89 24-33 (79)
9 1oqw_A Fimbrial protein; type 5.1 7.6E+02 0.026 19.3 4.4 21 78-98 12-32 (144)
10 1sjw_A Nogalonic acid methyl e 5.0 3.9E+02 0.013 20.0 2.5 21 259-279 117-137 (144)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=39.13 E-value=15 Score=22.74 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=18.9
Q ss_pred CchHHHHHHHHHHHHHhhcchhhhhhHH
Q 021443 67 SSTWSKWLLFLPGAISFGLGTWQIFRRQ 94 (312)
Q Consensus 67 ~~~w~~lll~l~~~v~~~LG~WQl~R~~ 94 (312)
+..|-.+.-+++...++..|+|-+.-++
T Consensus 3 htiweviaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 3 HTIWEVIAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467666566666667789999876544
No 2
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=16.36 E-value=53 Score=26.85 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=21.3
Q ss_pred ceEEEEEEEeccc-----ccccccCCCCCCCeeeeeC
Q 021443 235 LLVLFVGVRSQAF-----LYQQMIQAPVNGSMWMFLQ 266 (312)
Q Consensus 235 g~VtV~GvlR~~E-----~~~~~~f~p~n~~~w~~iD 266 (312)
|.|++....+.+. +..++-|... +|.|||+|
T Consensus 88 g~VeF~A~y~~~g~~~~~~hE~SrF~r~-~g~W~YvD 123 (128)
T 2jq5_A 88 GTVEFIARFRRGGGPEQSHHERSQFRKA-RGRWYFSE 123 (128)
T ss_dssp EEEEEEEEEEESSSCEEEEEEEEEEEEE-TTEEEEEE
T ss_pred EEEEEEEEEEeCCCceeEEEEeeeEEEE-CCEEEEeC
Confidence 7899999887643 1123345544 69999998
No 3
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=6.95 E-value=99 Score=18.32 Aligned_cols=9 Identities=44% Similarity=1.235 Sum_probs=7.2
Q ss_pred eeeecchhc
Q 021443 302 CFGVQSCLK 310 (312)
Q Consensus 302 ~~~~~~~~~ 310 (312)
|+|+.||-.
T Consensus 1 clgigscn~ 9 (26)
T 1rpb_A 1 CLGIGSCND 9 (26)
T ss_dssp CBSCSSBCS
T ss_pred CcceecccC
Confidence 889999853
No 4
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=6.18 E-value=2.9e+02 Score=21.10 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.7
Q ss_pred CCeeeeeCHHHHHHhcCCCc
Q 021443 259 GSMWMFLQLLVLVGSLKTLS 278 (312)
Q Consensus 259 ~~~w~~iDl~~ma~~lg~~p 278 (312)
...|.|.|...|.++||..|
T Consensus 125 ~e~~~~~D~~~l~~Qlg~~p 144 (146)
T 3kkg_A 125 IEMRYFTDLLAVMTAISAPP 144 (146)
T ss_dssp EEEEEEECHHHHHHHHTCCC
T ss_pred EEEEEecCHHHHHHHcCCCC
Confidence 35899999999999999876
No 5
>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1
Probab=6.05 E-value=1.9e+02 Score=25.05 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=21.8
Q ss_pred cceEEEEEEEeccc----ccccccCCCCC-----CCeeeeeCHH
Q 021443 234 KLLVLFVGVRSQAF----LYQQMIQAPVN-----GSMWMFLQLL 268 (312)
Q Consensus 234 ~g~VtV~GvlR~~E----~~~~~~f~p~n-----~~~w~~iDl~ 268 (312)
.+.|++....+... +..++-|+..+ .+.|||+|-.
T Consensus 114 ~g~VeF~A~y~~~g~~~~lhErSrFvr~~G~~~~~~rW~YvDG~ 157 (184)
T 2i9w_A 114 HAQVEFKAYFKTPDGLQAHHELSTFVKIKNKANSDASWYFLDPT 157 (184)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEECSSSSCEEEEECCSS
T ss_pred ccEEEEEEEEecCCCccceehhccceecCCccccccceeeccCC
Confidence 46788888887532 11344566543 1399999943
No 6
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=5.72 E-value=4e+02 Score=15.20 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 021443 89 QIFRRQDKIKMLEYRQNRL 107 (312)
Q Consensus 89 Ql~R~~wK~~Lia~ie~r~ 107 (312)
|++|.++-..|-+.+|.+.
T Consensus 2 qmnrydqaatlrakmekre 20 (23)
T 3syn_E 2 QMNRYDQAATLRAKMEKRE 20 (26)
T ss_pred ccchHHHHHHHHHHHHHHh
Confidence 7788887777777766553
No 7
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=5.68 E-value=2.1e+02 Score=25.60 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=11.1
Q ss_pred hhcchhhhhhHHHHHH
Q 021443 83 FGLGTWQIFRRQDKIK 98 (312)
Q Consensus 83 ~~LG~WQl~R~~wK~~ 98 (312)
++||+||++..+-+..
T Consensus 16 iGlGtw~~~~~~a~~~ 31 (324)
T 4gac_A 16 IGLGTWKSEPGQVKAA 31 (324)
T ss_dssp BCEECTTCCHHHHHHH
T ss_pred ceeECCCCCHHHHHHH
Confidence 4799999876544433
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.65 E-value=8.9e+02 Score=17.72 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=5.1
Q ss_pred HHHhhcchhh
Q 021443 80 AISFGLGTWQ 89 (312)
Q Consensus 80 ~v~~~LG~WQ 89 (312)
+.++.|..|-
T Consensus 24 iGllllliwk 33 (79)
T 2knc_B 24 IGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344556664
No 9
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=5.08 E-value=7.6e+02 Score=19.29 Aligned_cols=21 Identities=10% Similarity=-0.165 Sum_probs=9.6
Q ss_pred HHHHHhhcchhhhhhHHHHHH
Q 021443 78 PGAISFGLGTWQIFRRQDKIK 98 (312)
Q Consensus 78 ~~~v~~~LG~WQl~R~~wK~~ 98 (312)
+++++..++.-.+++...|.+
T Consensus 12 Ii~il~~ia~p~~~~~~~~~~ 32 (144)
T 1oqw_A 12 IIGILAAIAIPQYQNYVARSE 32 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455445544444433
No 10
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=5.03 E-value=3.9e+02 Score=20.00 Aligned_cols=21 Identities=5% Similarity=-0.198 Sum_probs=18.1
Q ss_pred CCeeeeeCHHHHHHhcCCCce
Q 021443 259 GSMWMFLQLLVLVGSLKTLSI 279 (312)
Q Consensus 259 ~~~w~~iDl~~ma~~lg~~pi 279 (312)
...|.|.|...|.+++|..|-
T Consensus 117 ~~~~~~~D~~~~~~qlg~~p~ 137 (144)
T 1sjw_A 117 RDHRDWPDFQGTLRQLGDPWP 137 (144)
T ss_dssp EEEEEEECHHHHHHHTTSCCC
T ss_pred EEEEEecCHHHHHHHcCCCCC
Confidence 357999999999999998764
Done!