BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021444
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 121/248 (48%), Gaps = 50/248 (20%)
Query: 34 SAVKTYQKNFNLEPTGQLDSQTMQHILRPRCGNPDIVNGTTTMNSGKPTSYNATSSTNGH 93
++ QK LE TG+LDS T++ + +PRCG PD
Sbjct: 45 KKIREMQKFLGLEVTGKLDSDTLEVMRKPRCGVPD------------------------- 79
Query: 94 LHSVGHYSFFPGMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFT 150
VGH+ FPG+P+W K LTY + PD D V + A W E T LTF+
Sbjct: 80 ---VGHFRTFPGIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFS 133
Query: 151 RTDVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXX 206
R +Y ADI I F +HGD PFDGP LAHA++P NG H D DE W
Sbjct: 134 R--LYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT---- 187
Query: 207 XXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQ 264
+L VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ
Sbjct: 188 ----KDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQ 243
Query: 265 ALYGNNPN 272
+LYG P+
Sbjct: 244 SLYGPPPD 251
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 116/245 (47%), Gaps = 47/245 (19%)
Query: 34 SAVKTYQKNFNLEPTGQLDSQTMQHILRPRCGNPDIVNGTTTMNSGKPTSYNATSSTNGH 93
+K Q+ F L+ TG+ D++T++ + +PRCG PD+ T
Sbjct: 43 EKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQFVLT------------------ 84
Query: 94 LHSVGHYSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFT 150
G PRW + LTY + PD D V + AF WS T LTFT
Sbjct: 85 ----------EGNPRW--EQTHLTYRIENYTPDLPRAD-VDHAIEKAFQLWSNVTPLTFT 131
Query: 151 RTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXX 207
+ ADI I F GDH D PFDGP G LAHAF P G H D DE W
Sbjct: 132 KVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT----- 185
Query: 208 XXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALY 267
+L VA HE+GH LGL HS+ A+MYPS + S V+LA DDI GIQA+Y
Sbjct: 186 ---NNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIY 241
Query: 268 GNNPN 272
G + N
Sbjct: 242 GRSQN 246
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 90/174 (51%), Gaps = 19/174 (10%)
Query: 105 GMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIR 161
G PRW + LTY + PD D V + AF WS T LTFT+ ADI
Sbjct: 6 GNPRW--EQTHLTYRIENYTPDLPRAD-VDHAIEKAFQLWSNVTPLTFTKVS-EGQADIM 61
Query: 162 IGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDL 218
I F GDH D PFDGP G LAHAF P G H D DE W +L
Sbjct: 62 ISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------NNFREYNL 113
Query: 219 ESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 272
VA HE+GH LGL HS+ A+MYPS + S V+LA DDI GIQA+YG + N
Sbjct: 114 HRVAAHELGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYGRSQN 166
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 90/174 (51%), Gaps = 19/174 (10%)
Query: 105 GMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIR 161
G PRW + LTY + PD D V + AF WS T LTFT+ ADI
Sbjct: 5 GNPRW--EQTHLTYRIENYTPDLPRAD-VDHAIEKAFQLWSNVTPLTFTKVS-EGQADIM 60
Query: 162 IGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDL 218
I F GDH D PFDGP G LAHAF P G H D DE W +L
Sbjct: 61 ISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------NNFREYNL 112
Query: 219 ESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 272
VA HE+GH LGL HS+ A+MYPS + S V+LA DDI GIQA+YG + N
Sbjct: 113 HRVAAHELGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYGRSQN 165
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 100 YSFFPGMPRWPSNKRDLTYAFLPDNQLTDE--VKNVFATAFDRWSEATSLTFTRTDVYTT 157
YS FP P+W S + +TY + + V + + A + W + L F R V+ T
Sbjct: 1 YSLFPNSPKWTS--KVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHF-RKVVWGT 57
Query: 158 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGR---FHLDGDENWVXXXXXXXXXXXX 214
ADI IGF G HGD PFDGP TLAHAF+P G H D DE W
Sbjct: 58 ADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWT-------DGSSL 110
Query: 215 XXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS-RKVELANDDIQGIQALYGNNPN 272
+ A HE+GH LG+GHSS +A+MYP+ +G + +L+ DDI+GIQ LYG N
Sbjct: 111 GINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 169
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 100 YSFFPGMPRWPSNKRDLTYAFLPDNQLTDE--VKNVFATAFDRWSEATSLTFTRTDVYTT 157
YS FP P+W S + +TY + + V + + A + W + L F R V+ T
Sbjct: 2 YSLFPNSPKWTS--KVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHF-RKVVWGT 58
Query: 158 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGR---FHLDGDENWVXXXXXXXXXXXX 214
ADI IGF G HGD PFDGP TLAHAF+P G H D DE W
Sbjct: 59 ADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWT-------DGSSL 111
Query: 215 XXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS-RKVELANDDIQGIQALYGNNPN 272
+ A HE+GH LG+GHSS +A+MYP+ +G + +L+ DDI+GIQ LYG N
Sbjct: 112 GINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 170
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 100 YSFFPGMPRWPSNKRDLTYAFLPDNQLTDE--VKNVFATAFDRWSEATSLTFTRTDVYTT 157
YS FP P+W S + +TY + + V + + A + W + L F R V+ T
Sbjct: 1 YSLFPNSPKWTS--KVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHF-RKVVWGT 57
Query: 158 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGR---FHLDGDENWVXXXXXXXXXXXX 214
ADI IGF G HGD PFDGP TLAHAF+P G H D DE W
Sbjct: 58 ADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWT-------DGSSL 110
Query: 215 XXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS-RKVELANDDIQGIQALYGNNPN 272
+ A HE+GH LG+GHSS +A+MYP+ +G + +L+ DDI+GIQ LYG N
Sbjct: 111 GINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 169
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 105 GMPRWP-SNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
G PRW ++ R + PD D V + AF WS+ T LTFT+ ADI I
Sbjct: 5 GNPRWEQTHLRYRIENYTPDLPRAD-VDHAIEKAFQLWSDVTPLTFTKVS-EGQADIMIS 62
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F GDH D PFDGP G LAHAF P G H D DE W +L
Sbjct: 63 FVRGDHRDNSPFDGPGGNLAHAFDPGPGIGGDAHFDEDERWT--------NNFREYNLHR 114
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 272
VA HE+GH LGL HS+ A+MYPS + S V+LA DDI GIQA+YG + N
Sbjct: 115 VAAHELGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYGRSQN 165
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 105 GMPRWP-SNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
G PRW ++ R + PD D V + AF WS T LTFT+ ADI I
Sbjct: 4 GNPRWEQTHLRYRIENYTPDLPRAD-VDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMIS 61
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F GDH D PFDGP G LAHAF P G H D DE W +L
Sbjct: 62 FVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------NNFREYNLHR 113
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 272
VA HE+GH LGL HS+ A+MYPS + S V+LA DDI GIQA+YG + N
Sbjct: 114 VAAHELGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYGRSQN 164
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 89/174 (51%), Gaps = 19/174 (10%)
Query: 105 GMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIR 161
G PRW + LTY + PD D V + AF WS T LTFT+ ADI
Sbjct: 6 GNPRW--EQTHLTYRIENYTPDLPRAD-VDHAIEKAFQLWSNVTPLTFTKVSE-GQADIM 61
Query: 162 IGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDL 218
I F GDH D PFDGP G LAHAF P G H D DE W +L
Sbjct: 62 ISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------NNFREYNL 113
Query: 219 ESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 272
VA H +GH LGL HS+ A+MYPS + S V+LA DDI GIQA+YG + N
Sbjct: 114 HRVAAHALGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYGRSQN 166
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 91/176 (51%), Gaps = 21/176 (11%)
Query: 104 PGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADI 160
PG PRW + LTY + PD D V AF WS + LTFT+ ADI
Sbjct: 5 PGNPRWENTH--LTYRIENYTPDLSRED-VDRAIEKAFQLWSNVSPLTFTKVSE-GQADI 60
Query: 161 RIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXD 217
I F GDH D PFDGP G LAHAF P G H D DE W +
Sbjct: 61 MISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------KNFRDYN 112
Query: 218 LESVAVHEIGHLLGLGHSSVEDAIMYPS-ISSGSRKVELANDDIQGIQALYGNNPN 272
L VA HE+GH LGL HS+ A+MYP+ I +G V+L+ DDI GIQA+YG + N
Sbjct: 113 LYRVAAHELGHSLGLSHSTDIGALMYPNYIYTGD--VQLSQDDIDGIQAIYGPSEN 166
>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909
Length = 165
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 92/174 (52%), Gaps = 21/174 (12%)
Query: 104 PGMPRWPSNKRDLTYA---FLPDNQLTD-EVKNVFATAFDRWSEATSLTFTRTDVYTTAD 159
PG P+W + +LTY + P QL++ EV+ AF+ WS A+ L FTR AD
Sbjct: 5 PGNPKW--ERTNLTYRIRNYTP--QLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEAD 59
Query: 160 IRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXX 216
I I F+ DHGD PFDGP G LAHAF P G H D +E W
Sbjct: 60 INIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--------NTSANY 111
Query: 217 DLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGN 269
+L VA HE GH LGL HSS A+MYP+ + + L DDI GIQA+YG+
Sbjct: 112 NLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYGD 165
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 97/177 (54%), Gaps = 21/177 (11%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+ FP +W ++ +LTY + PD + EV+ F AF WS+ T L FTR +Y
Sbjct: 1 YNVFPRTLKW--SQTNLTYRIVNYTPDMSHS-EVEKAFRKAFKVWSDVTPLNFTR--IYD 55
Query: 157 -TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXX 212
TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W
Sbjct: 56 GTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SS 107
Query: 213 XXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE+GH LGL HS A+M+P + +G L +DD+QGIQ LYG
Sbjct: 108 SKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLYG 164
>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex
pdb|1KBC|B Chain B, Procarboxypeptidase Ternary Complex
pdb|1JAN|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Phe79 Form)
Length = 164
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 91/173 (52%), Gaps = 21/173 (12%)
Query: 104 PGMPRWPSNKRDLTYA---FLPDNQLTD-EVKNVFATAFDRWSEATSLTFTRTDVYTTAD 159
PG P+W + +LTY + P QL++ EV+ AF+ WS A+ L FTR AD
Sbjct: 5 PGNPKW--ERTNLTYRIRNYTP--QLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEAD 59
Query: 160 IRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXX 216
I I F+ DHGD PFDGP G LAHAF P G H D +E W
Sbjct: 60 INIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--------NTSANY 111
Query: 217 DLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HSS A+MYP+ + + L DDI GIQA+YG
Sbjct: 112 NLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 164
>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2
With The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1JAP|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1JAO|A Chain A, Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With
The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1I73|A Chain A, Complex Of Pro-Leu-L-Trp Phosphonate With The Catalitic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1I76|A Chain A, Complex Of 2-(Biphenyl-4-Sulfonyl)-1,2,3,4-Tetrahydro-
Isoquinoline-3-Carboxylic Acid (D-Tic Derivative) With T
Catalitic Domain Of Matrix Metallo Proteinase-8 (Met80
Form)
pdb|1JJ9|A Chain A, Crystal Structure Of Mmp8-Barbiturate Complex Reveals
Mechanism For Collagen Substrate Recognition
pdb|1ZP5|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A N-
Hydroxyurea Inhibitor
pdb|1ZS0|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (s-enantiomer)
pdb|1ZVX|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (r-enantiomer)
pdb|1MMB|A Chain A, Complex Of Bb94 With The Catalytic Domain Of Matrix
Metalloproteinase-8
pdb|3DNG|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DNG|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPE|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
Length = 163
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 91/173 (52%), Gaps = 21/173 (12%)
Query: 104 PGMPRWPSNKRDLTYA---FLPDNQLTD-EVKNVFATAFDRWSEATSLTFTRTDVYTTAD 159
PG P+W + +LTY + P QL++ EV+ AF+ WS A+ L FTR AD
Sbjct: 4 PGNPKW--ERTNLTYRIRNYTP--QLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEAD 58
Query: 160 IRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXX 216
I I F+ DHGD PFDGP G LAHAF P G H D +E W
Sbjct: 59 INIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--------NTSANY 110
Query: 217 DLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HSS A+MYP+ + + L DDI GIQA+YG
Sbjct: 111 NLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 163
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 88/170 (51%), Gaps = 15/170 (8%)
Query: 105 GMPRWP-SNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
G PRW ++ R + PD D V + AF WS T LTFT+ ADI I
Sbjct: 4 GNPRWEQTHLRYRIENYTPDLPRAD-VDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMIS 61
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F GDH D PFDGP G LAHAF P G H D DE W +L
Sbjct: 62 FVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------NNFREYNLHR 113
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNN 270
VA HE+GH LGL HS+ A+MYPS + S V+LA DDI GIQA+YG +
Sbjct: 114 VAAHELGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYGRS 162
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 87/168 (51%), Gaps = 19/168 (11%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
PRW + LTY + PD D V + AF WS T LTFT+ ADI I
Sbjct: 2 PRW--EQTHLTYRIENYTPDLPRAD-VDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMIS 57
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F GDH D PFDGP G LAHAF P G H D DE W +L
Sbjct: 58 FVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------NNFREYNLHR 109
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYG 268
VA HE+GH LGL HS+ A+MYPS + S V+LA DDI GIQA+YG
Sbjct: 110 VAAHELGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYG 156
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 81/148 (54%), Gaps = 16/148 (10%)
Query: 127 TDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAF 186
T E +N +AF WS+ ++L+F + ADI+I + G+HGDG PFDG G LAHAF
Sbjct: 26 TTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTGILAHAF 85
Query: 187 SPP------NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDA 240
PP G H D DENW DL +VA HEIGHLLG+ HS+V A
Sbjct: 86 YPPPAGGNYAGHLHFDDDENW--------SINGSGIDLITVAAHEIGHLLGIEHSNVSSA 137
Query: 241 IMYPSISSGSRKVELANDDIQGIQALYG 268
+MYP + R +L NDD + LYG
Sbjct: 138 LMYPYYTGIKR--QLDNDDCLAVWDLYG 163
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 81/148 (54%), Gaps = 16/148 (10%)
Query: 127 TDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAF 186
T E +N +AF WS+ ++L+F + ADI+I + G+HGDG PFDG G LAHAF
Sbjct: 26 TTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTGILAHAF 85
Query: 187 SPP------NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDA 240
PP G H D DENW DL +VA HEIGHLLG+ HS+V A
Sbjct: 86 YPPPAGGNYAGHLHFDDDENW--------SINGSGIDLITVAAHEIGHLLGIEHSNVSSA 137
Query: 241 IMYPSISSGSRKVELANDDIQGIQALYG 268
+MYP + R +L NDD + LYG
Sbjct: 138 LMYPYYTGIKR--QLDNDDCLAVWDLYG 163
>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BIW|B Chain B, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BQO|A Chain A, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1BQO|B Chain B, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1B3D|A Chain A, Stromelysin-1
pdb|1B3D|B Chain B, Stromelysin-1
pdb|1CQR|A Chain A, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1CQR|B Chain B, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1C3I|A Chain A, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1C3I|B Chain B, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1D8M|A Chain A, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D8M|B Chain B, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D7X|A Chain A, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D7X|B Chain B, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D8F|A Chain A, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D8F|B Chain B, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D5J|A Chain A, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1D5J|B Chain B, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1G49|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G49|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G05|A Chain A, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1G05|B Chain B, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1HY7|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1HY7|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1BM6|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Stromelysin-1 Complexed To A Potent Non-Peptidic
Inhibitor, Nmr, 20 Structures
pdb|2SRT|A Chain A, Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc
Complexed With Inhibitor
pdb|1SLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-702,842
pdb|4DPE|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4DPE|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4JA1|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
pdb|4JA1|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
Length = 173
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 94/179 (52%), Gaps = 22/179 (12%)
Query: 103 FPGMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TA 158
FPG+P+W K LTY + PD D V + A W E T LTF+R +Y A
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEA 58
Query: 159 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXX 215
DI I F +HGD PFDGP LAHA++P NG H D DE W
Sbjct: 59 DIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTG 110
Query: 216 XDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYGNNPN 272
+L VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG P+
Sbjct: 111 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 169
>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1O|B Chain B, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
Length = 171
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 94/179 (52%), Gaps = 22/179 (12%)
Query: 103 FPGMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TA 158
FPG+P+W K LTY + PD D V + A W E T LTF+R +Y A
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEA 58
Query: 159 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXX 215
DI I F +HGD PFDGP LAHA++P NG H D DE W
Sbjct: 59 DIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTG 110
Query: 216 XDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYGNNPN 272
+L VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG P+
Sbjct: 111 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 169
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 91/173 (52%), Gaps = 21/173 (12%)
Query: 104 PGMPRWPSNKRDLTYA---FLPDNQLTD-EVKNVFATAFDRWSEATSLTFTRTDVYTTAD 159
PG P+W + +LTY + P QL++ EV+ AF+ WS A+ L FT AD
Sbjct: 3 PGGPKW--ERTNLTYRIRNYTP--QLSEAEVERAIKDAFELWSVASPLIFTGISQ-GEAD 57
Query: 160 IRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXX 216
I I F+ DHGDG PFDGP G LAHAF P G H D +E W
Sbjct: 58 INIAFYQRDHGDGSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--------NTSANY 109
Query: 217 DLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HSS A+MYP+ + + L DDI GIQA+YG
Sbjct: 110 NLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 162
>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Ensemble Of 20 Structures
pdb|1UMT|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Average Of 20 Structures Minimized With Restraints
Length = 174
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 94/179 (52%), Gaps = 22/179 (12%)
Query: 103 FPGMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TA 158
FPG+P+W K LTY + PD D V + A W E T LTF+R +Y A
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEA 58
Query: 159 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXX 215
DI I F +HGD PFDGP LAHA++P NG H D DE W
Sbjct: 59 DIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTG 110
Query: 216 XDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYGNNPN 272
+L VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG P+
Sbjct: 111 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 169
>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide
Length = 169
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 94/179 (52%), Gaps = 22/179 (12%)
Query: 103 FPGMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TA 158
FPG+P+W K LTY + PD D V + A W E T LTF+R +Y A
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEA 58
Query: 159 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXX 215
DI I F +HGD PFDGP LAHA++P NG H D DE W
Sbjct: 59 DIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTG 110
Query: 216 XDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYGNNPN 272
+L VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG P+
Sbjct: 111 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 169
>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-Peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1CIZ|A Chain A, X-ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1G4K|A Chain A, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|B Chain B, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|C Chain C, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1OO9|A Chain A, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|3USN|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Stromelysin-1 Inhibited With The Thiadiazole Inhibitor
Ipnu-107859, Nmr, 1 Structure
Length = 168
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 93/178 (52%), Gaps = 22/178 (12%)
Query: 103 FPGMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TA 158
FPG+P+W K LTY + PD D V + A W E T LTF+R +Y A
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEA 58
Query: 159 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXX 215
DI I F +HGD PFDGP LAHA++P NG H D DE W
Sbjct: 59 DIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTG 110
Query: 216 XDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYGNNP 271
+L VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG P
Sbjct: 111 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 92/174 (52%), Gaps = 16/174 (9%)
Query: 100 YSFFPGMPRWPSNKRDLTYAFLPDNQLTDE--VKNVFATAFDRWSEATSLTFTRTDVYTT 157
YS FP P+W S + +TY + + V + + A + W + L F R V+ T
Sbjct: 2 YSLFPNSPKWTS--KVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHF-RKVVWGT 58
Query: 158 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGR---FHLDGDENWVXXXXXXXXXXXX 214
ADI IGF G HGD PFDGP TLAHAF+P G H D DE W
Sbjct: 59 ADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWT-------DGSSL 111
Query: 215 XXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS-RKVELANDDIQGIQALY 267
+ A HE+GH LG+GHSS +A+MYP+ +G + +L+ DDI+GIQ LY
Sbjct: 112 GINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+ FP +W +K +LTY + PD EV+ F AF WS+ T L FTR
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPD-MTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-G 56
Query: 157 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXX 213
ADI I F +HGD PFDGP G LAHAF P PN G H D DE W
Sbjct: 57 IADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSS 108
Query: 214 XXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG
Sbjct: 109 KGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor
Length = 159
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 90/172 (52%), Gaps = 21/172 (12%)
Query: 105 GMPRWPSNKRDLTYA---FLPDNQLTD-EVKNVFATAFDRWSEATSLTFTRTDVYTTADI 160
G P+W + +LTY + P QL++ EV+ AF+ WS A+ L FTR ADI
Sbjct: 1 GNPKW--ERTNLTYRIRNYTP--QLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADI 55
Query: 161 RIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXD 217
I F+ DHGD PFDGP G LAHAF P G H D +E W +
Sbjct: 56 NIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--------NTSANYN 107
Query: 218 LESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
L VA HE GH LGL HSS A+MYP+ + + L DDI GIQA+YG
Sbjct: 108 LFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 159
>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|B Chain B, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|C Chain C, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|D Chain D, Crystal Structure Of Mmp-13 In Complex With Sc-78080
Length = 164
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+ FP +W +K +LTY + PD EV+ F AF WS+ T L FTR
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPD-MTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-G 56
Query: 157 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXX 213
ADI I F +HGD PFDGP G LAHAF P PN G H D DE W
Sbjct: 57 IADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSS 108
Query: 214 XXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG
Sbjct: 109 KGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+ FP +W +K +LTY + PD EV+ F AF WS+ T L FTR
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPD-MTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-G 56
Query: 157 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXX 213
ADI I F +HGD PFDGP G LAHAF P PN G H D DE W
Sbjct: 57 IADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSS 108
Query: 214 XXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG
Sbjct: 109 KGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+ FP +W +K +LTY + PD EV+ F AF WS+ T L FTR
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPD-MTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-G 56
Query: 157 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXX 213
ADI I F +HGD PFDGP G LAHAF P PN G H D DE W
Sbjct: 57 IADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSS 108
Query: 214 XXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG
Sbjct: 109 KGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OW9|B Chain B, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OZR|A Chain A, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|B Chain B, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|C Chain C, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|D Chain D, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|E Chain E, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|F Chain F, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|G Chain G, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|H Chain H, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
Length = 170
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+ FP +W +K +LTY + PD EV+ F AF WS+ T L FTR
Sbjct: 4 YNVFPRTLKW--SKMNLTYRIVNYTPD-MTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-G 59
Query: 157 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXX 213
ADI I F +HGD PFDGP G LAHAF P PN G H D DE W
Sbjct: 60 IADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSS 111
Query: 214 XXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG
Sbjct: 112 KGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 167
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+ FP +W +K +LTY + PD EV+ F AF WS+ T L FTR
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPD-MTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-G 56
Query: 157 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXX 213
ADI I F +HGD PFDGP G LAHAF P PN G H D DE W
Sbjct: 57 IADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSS 108
Query: 214 XXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG
Sbjct: 109 KGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+ FP +W +K +LTY + PD EV+ F AF WS+ T L FTR
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPD-MTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-G 56
Query: 157 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXX 213
ADI I F +HGD PFDGP G LAHAF P PN G H D DE W
Sbjct: 57 IADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSS 108
Query: 214 XXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG
Sbjct: 109 KGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
pdb|1C8T|B Chain B, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
Length = 167
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 94/179 (52%), Gaps = 22/179 (12%)
Query: 103 FPGMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TA 158
FPG+P+W K LTY + PD D V + A W E T LTF+R +Y A
Sbjct: 1 FPGIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEA 55
Query: 159 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXX 215
DI I F +HGD PFDGP LAHA++P NG H D DE W
Sbjct: 56 DIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTG 107
Query: 216 XDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYGNNPN 272
+L VA H+IGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG P+
Sbjct: 108 TNLFLVAAHQIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 166
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+ FP +W +K +LTY + PD EV+ F AF WS+ T L FTR
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPD-MTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-G 56
Query: 157 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXX 213
ADI I F +HGD PFDGP G LAHAF P PN G H D DE W
Sbjct: 57 IADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSS 108
Query: 214 XXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG
Sbjct: 109 KGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 92/175 (52%), Gaps = 22/175 (12%)
Query: 103 FPGMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TA 158
FPG+P+W K LTY + PD D V + A W E T LTF+R +Y A
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEA 58
Query: 159 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXX 215
DI I F +HGD PFDGP LAHA++P NG H D DE W
Sbjct: 59 DIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTG 110
Query: 216 XDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYG 268
+L VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG
Sbjct: 111 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 92/175 (52%), Gaps = 22/175 (12%)
Query: 103 FPGMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TA 158
FPG+P+W K LTY + PD D V + A W E T LTF+R +Y A
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEA 58
Query: 159 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXX 215
DI I F +HGD PFDGP LAHA++P NG H D DE W
Sbjct: 59 DIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTG 110
Query: 216 XDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYG 268
+L VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG
Sbjct: 111 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor
pdb|1JH1|A Chain A, Crystal Structure Of Mmp-8 Complexed With A 6h-1,3,4-
Thiadiazine Derived Inhibitor
pdb|2OY2|A Chain A, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY2|F Chain F, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY4|A Chain A, Uninhibited Human Mmp-8
pdb|2OY4|F Chain F, Uninhibited Human Mmp-8
pdb|1A85|A Chain A, Mmp8 With Malonic And Asparagine Based Inhibitor
Length = 158
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 89/170 (52%), Gaps = 21/170 (12%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTD-EVKNVFATAFDRWSEATSLTFTRTDVYTTADIRI 162
P+W + +LTY + P QL++ EV+ AF+ WS A+ L FTR ADI I
Sbjct: 2 PKW--ERTNLTYRIRNYTP--QLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADINI 56
Query: 163 GFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLE 219
F+ DHGD PFDGP G LAHAF P G H D +E W +L
Sbjct: 57 AFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--------NTSANYNLF 108
Query: 220 SVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
VA HE GH LGL HSS A+MYP+ + + L DDI GIQA+YG
Sbjct: 109 LVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 158
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 81/168 (48%), Gaps = 13/168 (7%)
Query: 105 GMPRWPSNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGF 164
G P+W N + + + EV A WS A L+F R + ADI I F
Sbjct: 1 GEPKWKKNTLTYRISKYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINS-GEADIMISF 59
Query: 165 FTGDHGDGEPFDGPMGTLAHAFSPPNGR---FHLDGDENWVXXXXXXXXXXXXXXDLESV 221
GDHGD PFDGP GTLAHAF+P G H D E W +L +V
Sbjct: 60 ENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGTNGFNLFTV 111
Query: 222 AVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
A HE GH LGL HS+ A+MYP+ L DD++GIQALYG
Sbjct: 112 AAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYG 159
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 84/161 (52%), Gaps = 17/161 (10%)
Query: 116 LTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDG 172
LTY + PD D V + AF WS T LTFT+ ADI I F GDH D
Sbjct: 7 LTYRIENYTPDLPRAD-VDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDN 64
Query: 173 EPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHL 229
PFDGP G LAHAF P G H D DE W +L VA HE+GH
Sbjct: 65 SPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------NNFREYNLHRVAAHELGHS 116
Query: 230 LGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNN 270
LGL HS+ A+MYPS + S V+LA DDI GIQA+YG +
Sbjct: 117 LGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYGRS 156
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 103 FPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TA 158
FPG+P+W K LTY + PD D V + A W E T LTF+R +Y A
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEA 58
Query: 159 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXX 215
DI I F +HGD PFDGP LAHA++P NG H D DE W
Sbjct: 59 DIXISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTG 110
Query: 216 XDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYGNNPN 272
+L VA HEIGH LGL HS+ +A+ YP S + + L+ DDI GIQ+LYG P+
Sbjct: 111 TNLFLVAAHEIGHSLGLFHSANTEALXYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 169
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 94/178 (52%), Gaps = 22/178 (12%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
+S FPGMP+W K LTY + PD D V + A W E T LTF+R +Y
Sbjct: 1 FSSFPGMPKW--RKTHLTYRIVNYTPDLP-RDAVDSAIEKALKVWEEVTPLTFSR--LYE 55
Query: 157 -TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRF---HLDGDENWVXXXXXXXXXX 212
ADI I F +HGD FDGP +LAHA+ P G + H D DE W
Sbjct: 56 GEADIMISFAVKEHGDNYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWT--------ED 107
Query: 213 XXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSR--KVELANDDIQGIQALYG 268
+L VA HE+GH LGL HS+ +A+MYP +S + + L+ DD+ GIQ+LYG
Sbjct: 108 ASGTNLFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLYG 165
>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|C Chain C, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|D Chain D, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3O2X|A Chain A, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|B Chain B, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|C Chain C, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|D Chain D, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
Length = 164
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 90/173 (52%), Gaps = 19/173 (10%)
Query: 103 FPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTAD 159
FP +W +K +LTY + PD EV+ F AF WS+ T L FTR AD
Sbjct: 4 FPRTLKW--SKMNLTYRIVNYTPD-MTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIAD 59
Query: 160 IRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXX 216
I I F +HGD PFDGP G LAHAF P PN G H D DE W
Sbjct: 60 IMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGY 111
Query: 217 DLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
+L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG
Sbjct: 112 NLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 91/175 (52%), Gaps = 19/175 (10%)
Query: 100 YSFFPGMPRWPSNKRDLTY---AFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+FFP P+W N+ +TY + PD + V + FA AF WS+ T L F+R
Sbjct: 2 YNFFPRKPKWDKNQ--ITYRIIGYTPDLD-PETVDDAFARAFQVWSDVTPLRFSRIHD-G 57
Query: 157 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXX 213
ADI I F +HGDG PFDG G LAHAF+P G H D DE W
Sbjct: 58 EADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTNTSANYS---- 113
Query: 214 XXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYG 268
L VA HE GH +GL HS A+M P I + ++ L+ DDI+GIQ LYG
Sbjct: 114 ----LFLVAAHEFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYG 163
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 94/178 (52%), Gaps = 22/178 (12%)
Query: 100 YSFFPGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
+S FPGMP+W K LTY + PD D V + A W E T LTF+R +Y
Sbjct: 1 FSSFPGMPKW--RKTHLTYRIVNYTPDLP-RDAVDSAIEKALKVWEEVTPLTFSR--LYE 55
Query: 157 -TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRF---HLDGDENWVXXXXXXXXXX 212
ADI I F +HGD FDGP +LAHA+ P G + H D DE W
Sbjct: 56 GEADIMISFAVKEHGDFYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWT--------ED 107
Query: 213 XXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSR--KVELANDDIQGIQALYG 268
+L VA HE+GH LGL HS+ +A+MYP +S + + L+ DD+ GIQ+LYG
Sbjct: 108 ASGTNLFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLYG 165
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 93/179 (51%), Gaps = 18/179 (10%)
Query: 100 YSFFPGMPRWPSNKRDLTY---AFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT 156
Y+FFP P+W N+ +TY + PD + V + FA AF WS+ T L F+R
Sbjct: 1 YNFFPRKPKWDKNQ--ITYRIIGYTPDLD-PETVDDAFARAFQVWSDVTPLRFSRIHD-G 56
Query: 157 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXX 213
ADI I F +HGDG PFDG G LAHAF+P G H D DE W
Sbjct: 57 EADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGKGVGYS--- 113
Query: 214 XXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 272
L VA H GH +GL HS A+M P I + ++ L+ DDI+GIQ LYG +P+
Sbjct: 114 ----LFLVAAHAFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGASPD 167
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 90/173 (52%), Gaps = 22/173 (12%)
Query: 105 GMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TADI 160
G+P+W K LTY + PD D V + A W E T LTF+R +Y ADI
Sbjct: 1 GIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEADI 55
Query: 161 RIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXD 217
I F +HGD PFDGP LAHA++P NG H D DE W +
Sbjct: 56 MISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTGTN 107
Query: 218 LESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYG 268
L VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG
Sbjct: 108 LFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 160
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 90/173 (52%), Gaps = 22/173 (12%)
Query: 105 GMPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TADI 160
G+P+W K LTY + PD D V + A W E T LTF+R +Y ADI
Sbjct: 1 GIPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEADI 55
Query: 161 RIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXD 217
I F +HGD PFDGP LAHA++P NG H D DE W +
Sbjct: 56 MISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTGTN 107
Query: 218 LESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYG 268
L VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG
Sbjct: 108 LFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 160
>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 162
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 90/175 (51%), Gaps = 22/175 (12%)
Query: 106 MPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TADIR 161
+P+W K LTY + PD D V + A W E T LTF+R +Y ADI
Sbjct: 1 IPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEADIM 55
Query: 162 IGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDL 218
I F +HGD PFDGP LAHA++P NG H D DE W +L
Sbjct: 56 ISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTGTNL 107
Query: 219 ESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYGNNP 271
VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG P
Sbjct: 108 FLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 162
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 89/172 (51%), Gaps = 22/172 (12%)
Query: 106 MPRWPSNKRDLTYAFL---PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TADIR 161
+P+W K LTY + PD D V + A W E T LTF+R +Y ADI
Sbjct: 1 IPKW--RKTHLTYRIVNYTPDLP-KDAVDSAVEKALKVWEEVTPLTFSR--LYEGEADIM 55
Query: 162 IGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDL 218
I F +HGD PFDGP LAHA++P NG H D DE W +L
Sbjct: 56 ISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTGTNL 107
Query: 219 ESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYG 268
VA HEIGH LGL HS+ +A+MYP S + + L+ DDI GIQ+LYG
Sbjct: 108 FLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 159
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 108 RWPSNKRDLTYAFL--PDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFF 165
RW K DLTY L P + ++V+ A A WSE T LTFT ADI I F
Sbjct: 8 RW--EKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHE-GRADIMIDFA 64
Query: 166 TGDHGDGEPFDGPMGTLAHAFSPPNGR---FHLDGDENWVXXXXXXXXXXXXXXDLESVA 222
HGD PFDGP G LAHAF P R H D DE W DL VA
Sbjct: 65 RYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWT-------IGDNQGTDLLQVA 117
Query: 223 VHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGN 269
HE GH+LGL H++ A+M P + + L+ DD +GIQ LYG
Sbjct: 118 AHEFGHVLGLQHTTAAKALMSP-FYTFRYPLSLSPDDRRGIQHLYGR 163
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 86/178 (48%), Gaps = 38/178 (21%)
Query: 31 MLESAVKTYQKNFNLEPTGQLDSQTMQHILRPRCGNPDIVNGTTTMNSGKPTSYNATSST 90
+L+ +K QK F L TG LD T++ + +PRCGNPD+ N
Sbjct: 38 VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVAN------------------- 78
Query: 91 NGHLHSVGHYSFFPGMPRWPSNKRDLTY---AFLPDNQLTDEVKNVFATAFDRWSEATSL 147
Y+FFP P+W N+ +TY + PD + V + FA AF WS+ T L
Sbjct: 79 ---------YNFFPRKPKWDKNQ--ITYRIIGYTPDLD-PETVDDAFARAFQVWSDVTPL 126
Query: 148 TFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWV 202
F+R ADI I F +HGDG PFDG G LAHAF+P G H D DE W
Sbjct: 127 RFSRIHD-GEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWT 183
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPNFN 274
VA H+ GH +GL HS A+M P I + ++ L+ DDI+GIQ LYG +P+ +
Sbjct: 369 VAAHQFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGASPDID 421
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 86/178 (48%), Gaps = 38/178 (21%)
Query: 31 MLESAVKTYQKNFNLEPTGQLDSQTMQHILRPRCGNPDIVNGTTTMNSGKPTSYNATSST 90
+L+ +K QK F L TG LD T++ + +PRCGNPD+ N
Sbjct: 40 VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVAN------------------- 80
Query: 91 NGHLHSVGHYSFFPGMPRWPSNKRDLTY---AFLPDNQLTDEVKNVFATAFDRWSEATSL 147
Y+FFP P+W +K +TY + PD + V + FA AF WS+ T L
Sbjct: 81 ---------YNFFPRKPKW--DKNQITYRIIGYTPDLD-PETVDDAFARAFQVWSDVTPL 128
Query: 148 TFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWV 202
F+R ADI I F +HGDG PFDG G LAHAF+P G H D DE W
Sbjct: 129 RFSRIHD-GEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWT 185
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPNFNGSSVPT 280
VA H GH +GL HS A+M P I + ++ L+ DDI+GIQ LYG +P+ + + PT
Sbjct: 371 VAAHAFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGASPDIDLGTGPT 429
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 88/171 (51%), Gaps = 18/171 (10%)
Query: 107 PRWPSNKRDLTY---AFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
P+W N+ +TY + PD + V + FA AF WS+ T L F+R ADI I
Sbjct: 3 PKWDKNQ--ITYRIIGYTPDLD-PETVDDAFARAFQVWSDVTPLRFSRIHD-GEADIMIN 58
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F +HGDG PFDG G LAHAF+P G H D DE W L
Sbjct: 59 FGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELW-------SLGKGVGYSLFL 111
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNP 271
VA HE GH +GL HS A+M P I + ++ L+ DDI+GIQ LYG +P
Sbjct: 112 VAAHEFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGASP 161
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 85/173 (49%), Gaps = 19/173 (10%)
Query: 104 PGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADI 160
PG P W K +TY + PD D V AF WS T L F++ + ADI
Sbjct: 6 PGGPVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADI 61
Query: 161 RIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXD 217
+ F G HGD FDG G LAHAF P + G H D DE W +
Sbjct: 62 LVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTN 113
Query: 218 LESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGN 269
L AVHEIGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG+
Sbjct: 114 LFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGD 166
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 130 VKNVFATAFDRWSEATSLTFTRTDVYTT-ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP 188
+ + FA AF WS T LTFTR VY+ ADI I F +HGDG PFDG G LAHAF P
Sbjct: 32 IDDAFARAFALWSAVTPLTFTR--VYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPP 89
Query: 189 ---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPS 245
G H D DE W L VA HE GH LGL HSSV +A+MYP
Sbjct: 90 GPGIQGDAHFDDDELW-------SLGKGQGYSLFLVAAHEFGHALGLDHSSVPEALMYP- 141
Query: 246 ISSGSRKVELANDDIQGIQALY 267
+ + L DD+ GI+ LY
Sbjct: 142 MYRFTEGPPLHKDDVNGIRHLY 163
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 104 PGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADI 160
PG P W K +TY + PD D V AF WS T L F++ + ADI
Sbjct: 6 PGGPVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADI 61
Query: 161 RIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXD 217
+ F G HGD FDG G LAHAF P + G H D DE W +
Sbjct: 62 LVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTN 113
Query: 218 LESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
L AVHEIGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG
Sbjct: 114 LFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 165
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 104 PGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADI 160
PG P W K +TY + PD D V AF WS T L F++ + ADI
Sbjct: 5 PGGPVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADI 60
Query: 161 RIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXD 217
+ F G HGD FDG G LAHAF P + G H D DE W +
Sbjct: 61 LVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTN 112
Query: 218 LESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
L AVHEIGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG
Sbjct: 113 LFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 164
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 130 VKNVFATAFDRWSEATSLTFTRTDVYTT-ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP 188
+ + FA AF WS T LTFTR VY+ ADI I F +HGDG PFDG G LAHAF P
Sbjct: 32 IDDAFARAFALWSAVTPLTFTR--VYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPP 89
Query: 189 ---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPS 245
G H D DE W L VA H+ GH LGL HSSV +A+MYP
Sbjct: 90 GPGIQGDAHFDDDELW-------SLGKGQGYSLFLVAAHQFGHALGLDHSSVPEALMYP- 141
Query: 246 ISSGSRKVELANDDIQGIQALY 267
+ + L DD+ GI+ LY
Sbjct: 142 MYRFTEGPPLHKDDVNGIRHLY 163
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 130 VKNVFATAFDRWSEATSLTFTRTDVYTT-ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP 188
+ + FA AF WS T LTFTR VY+ ADI I F +HGDG PFDG G LAHAF P
Sbjct: 28 IDDAFARAFALWSAVTPLTFTR--VYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPP 85
Query: 189 ---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPS 245
G H D DE W L VA H+ GH LGL HSSV +A+MYP
Sbjct: 86 GPGIQGDAHFDDDELW-------SLGKGQGYSLFLVAAHQFGHALGLDHSSVPEALMYP- 137
Query: 246 ISSGSRKVELANDDIQGIQALY 267
+ + L DD+ GI+ LY
Sbjct: 138 MYRFTEGPPLHKDDVNGIRHLY 159
>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of
Macrophage Metalloelastase (Mmp-12)
Length = 164
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 104 PGMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADI 160
PG P W K +TY + PD D V AF WS T L F++ + ADI
Sbjct: 5 PGGPVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADI 60
Query: 161 RIGFFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXD 217
+ F G HGD FDG G LAHAF P + G H D DE W +
Sbjct: 61 LVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTN 112
Query: 218 LESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
L AVH IGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG
Sbjct: 113 LFLTAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 164
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 87/185 (47%), Gaps = 28/185 (15%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
P W K +TY + PD D V AF WS T L F++ + ADI +
Sbjct: 2 PVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 57
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F G HGD FDG G LAHAF P + G H D DE W +L
Sbjct: 58 FARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFL 109
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNGSSVP 279
AVHEIGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG+ P
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGD---------P 160
Query: 280 TDQQR 284
+ QR
Sbjct: 161 KENQR 165
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
P W K +TY + PD D V AF WS T L F++ + ADI +
Sbjct: 4 PVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 59
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F G HGD FDG G LAHAF P + G H D DE W +L
Sbjct: 60 FARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFL 111
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGN 269
AVHEIGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG+
Sbjct: 112 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGD 161
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
P W K +TY + PD D V AF WS T L F++ + ADI +
Sbjct: 2 PVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 57
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F G HGD FDG G LAHAF P + G H D DE W +L
Sbjct: 58 FARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFL 109
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
AVHEIGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
P W K +TY + PD D V AF WS T L F++ + ADI +
Sbjct: 3 PVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 58
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F G HGD FDG G LAHAF P + G H D DE W +L
Sbjct: 59 FARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFL 110
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
AVHEIGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG
Sbjct: 111 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 159
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
P W K +TY + PD D V AF WS T L F++ + ADI +
Sbjct: 2 PVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 57
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F G HGD FDG G LAHAF P + G H D DE W +L
Sbjct: 58 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFL 109
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGN 269
AVHEIGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG+
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGD 159
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
P W K +TY + PD D V AF WS T L F++ + ADI +
Sbjct: 3 PVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 58
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F G HGD FDG G LAHAF P + G H D DE W +L
Sbjct: 59 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFL 110
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGN 269
AVHEIGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG+
Sbjct: 111 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGD 160
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
P W K +TY + PD D V AF WS T L F++ + ADI +
Sbjct: 2 PVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 57
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F G HGD FDG G LAHAF P + G H D DE W +L
Sbjct: 58 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFL 109
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGN 269
AVHEIGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG+
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGD 159
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 76/153 (49%), Gaps = 14/153 (9%)
Query: 120 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPM 179
+ PD D V AF WS T L F++ + ADI + F G HGD FDG
Sbjct: 10 YTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKG 67
Query: 180 GTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSS 236
G LAHAF P + G H D DE W +L AVHEIGH LGLGHSS
Sbjct: 68 GILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFLTAVHEIGHSLGLGHSS 119
Query: 237 VEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
A+M+P+ L+ DDI+GIQ+LYG
Sbjct: 120 DPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 152
>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|B Chain B, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|C Chain C, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|D Chain D, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|3UVC|A Chain A, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
pdb|3UVC|B Chain B, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
Length = 164
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
P W K +TY + PD D V AF WS T L F++ + ADI +
Sbjct: 3 PVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 58
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F G HGD FDG G LAHAF P + G H D DE W +L
Sbjct: 59 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFL 110
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNN 270
AVH IGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG++
Sbjct: 111 TAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGHH 161
>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At
True Atomic Resolution
Length = 158
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 81/169 (47%), Gaps = 19/169 (11%)
Query: 107 PRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIG 163
P W K +TY + PD D V AF WS T L F++ + ADI +
Sbjct: 2 PVW--RKHYITYRINNYTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 57
Query: 164 FFTGDHGDGEPFDGPMGTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLES 220
F G HGD FDG G LAHAF P + G H D DE W +L
Sbjct: 58 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFL 109
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 268
AVH IGH LGLGHSS A+M+P+ L+ DDI+GIQ+LYG
Sbjct: 110 TAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 120 FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPM 179
+ PD D V AF WS T L F++ + ADI + F G HGD FDG
Sbjct: 11 YTPDMNRED-VDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKG 68
Query: 180 GTLAHAFSPPN---GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSS 236
G LAHAF P + G H D DE W +L AVHEIGH LGLGHSS
Sbjct: 69 GILAHAFGPGSGIGGDAHFDEDEFWT--------THSGGTNLFLTAVHEIGHSLGLGHSS 120
Query: 237 VEDAIMYPSIS-SGSRKVELANDDIQGIQALY 267
A+M+P+ L+ DDI+GIQ+LY
Sbjct: 121 DPKAVMFPTYKYVDINTFRLSADDIRGIQSLY 152
>pdb|1RM8|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-16MT3-
Mmp: Characterization Of Mt-Mmp Specific Features
Length = 169
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 71/150 (47%), Gaps = 15/150 (10%)
Query: 129 EVKNVFATAFDRWSEATSLTFTRT------DVYTTADIRIGFFTGDHGDGEPFDGPMGTL 182
E + AFD W T LTF + DI I F +G HGD PFDG G L
Sbjct: 24 ETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFL 83
Query: 183 AHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVED 239
AHA+ P G H D DE W DL VAVHE+GH LGL HS+
Sbjct: 84 AHAYFPGPGIGGDTHFDSDEPWT-----LGNPNHDGNDLFLVAVHELGHALGLEHSNDPT 138
Query: 240 AIMYPSIS-SGSRKVELANDDIQGIQALYG 268
AIM P + +L NDD+QGIQ +YG
Sbjct: 139 AIMAPFYQYMETDNFKLPNDDLQGIQKIYG 168
>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|A Chain A, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 181
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 137 AFDRWSEATSLTF-------TRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP- 188
AF W AT L F R ADI I F G HGD PFDG G LAHA+ P
Sbjct: 36 AFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPG 95
Query: 189 PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSI 246
PN G H D E W D+ VAVHE+GH LGL HSS AIM P
Sbjct: 96 PNIGGDTHFDSAEPWT-----VRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFY 150
Query: 247 S-SGSRKVELANDDIQGIQALYGNNPNF 273
+ L +DD +GIQ LYG F
Sbjct: 151 QWMDTENFVLPDDDRRGIQQLYGGESGF 178
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 67/143 (46%), Gaps = 16/143 (11%)
Query: 137 AFDRWSEATSLTF-------TRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP- 188
AF W AT L F R ADI I F G HGD PFDG G LAHA+ P
Sbjct: 34 AFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPG 93
Query: 189 PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSI 246
PN G H D E W D+ VAVHE+GH LGL HSS AIM P
Sbjct: 94 PNIGGDTHFDSAEPWT-----VRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFY 148
Query: 247 S-SGSRKVELANDDIQGIQALYG 268
+ L +DD +GIQ LYG
Sbjct: 149 QWMDTENFVLPDDDRRGIQQLYG 171
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 74/158 (46%), Gaps = 34/158 (21%)
Query: 48 TGQLDSQTMQHILRPRCGNPDIVNGTTTMNSGKPTSYNATSSTNGHLHSVGHYSFFPGMP 107
TG+LDS T++ + PRCG PD+ T K +N T + + +YS
Sbjct: 64 TGELDSATLKAMRTPRCGVPDLGRFQTFEGDLKWHHHNIT-------YWIQNYS------ 110
Query: 108 RWPSNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTT-ADIRIGFFT 166
DL A + D FA AF WS T LTFTR VY+ ADI I F
Sbjct: 111 ------EDLPRAVIDD---------AFARAFALWSAVTPLTFTR--VYSRDADIVIQFGV 153
Query: 167 GDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENW 201
+HGDG PFDG G LAHAF P G H D DE W
Sbjct: 154 AEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELW 191
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 221 VAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYG 268
VA HE GH LGL HSSV +A+MYP + + L DD+ GI+ LYG
Sbjct: 379 VAAHEFGHALGLDHSSVPEALMYP-MYRFTEGPPLHKDDVNGIRHLYG 425
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 55/161 (34%), Gaps = 34/161 (21%)
Query: 137 AFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLD 196
+ WS+ +LTFT +A+I G +T D + GT A+A+ P N +
Sbjct: 91 SLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGN---YQG 143
Query: 197 GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSS----------------VEDA 240
+W HEIGH LGL H ED+
Sbjct: 144 AGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVYAEDS 203
Query: 241 IMYPSISSGSRKVELAN-----------DDIQGIQALYGNN 270
+ +S A+ DDI IQ LYG N
Sbjct: 204 YQFSILSYWGENETGADYNGHYGGAPMIDDIAAIQRLYGAN 244
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 137 AFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLD 196
+ WS+ +LTFT +A+I G +T D + GT A+A+ P N +
Sbjct: 108 SLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGN---YQG 160
Query: 197 GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGH 234
+W HEIGH LGL H
Sbjct: 161 AGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 198
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 137 AFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLD 196
+ WS+ +LTFT +A+I G +T D + GT A+A+ P N +
Sbjct: 108 SLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGN---YQG 160
Query: 197 GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGH 234
+W HEIGH LGL H
Sbjct: 161 AGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 198
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 137 AFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLD 196
+ WS+ +LTFT +A+I G +T D + GT A+A+ P N +
Sbjct: 91 SLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGN---YQG 143
Query: 197 GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGH 234
+W HEIGH LGL H
Sbjct: 144 AGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 181
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 137 AFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLD 196
+ WS+ +LTFT +A+I G +T D + GT A+A+ P N +
Sbjct: 91 SLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGN---YQG 143
Query: 197 GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGH 234
+W HEIGH LGL H
Sbjct: 144 AGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 181
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 54/161 (33%), Gaps = 34/161 (21%)
Query: 137 AFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLD 196
+ WS+ +LTFT +A+I G +T D + GT A+A+ P N +
Sbjct: 91 SLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGN---YQG 143
Query: 197 GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSS----------------VEDA 240
+W H IGH LGL H ED+
Sbjct: 144 AGSSWYNYNQSNIRNPGSEEYGRQTFTHAIGHALGLAHPGEYNAGEGDPSYNDAVYAEDS 203
Query: 241 IMYPSISSGSRKVELAN-----------DDIQGIQALYGNN 270
+ IS A+ DDI IQ LYG N
Sbjct: 204 YQFSIISYWGENETGADYNGHYGGAPMIDDIAAIQRLYGAN 244
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 137 AFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLD 196
+ WS+ +LTFT +A+I G +T D + GT A+A+ P N +
Sbjct: 91 SLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGN---YQG 143
Query: 197 GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGH 234
+W H+IGH LGL H
Sbjct: 144 AGSSWYNYNQSNIRNPGSEEYGRQTFTHKIGHALGLAH 181
>pdb|1SMP|A Chain A, Crystal Structure Of A Complex Between Serratia Marcescens
Metallo-Protease And An Inhibitor From Erwinia
Chrysanthemi
Length = 471
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 125 QLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAH 184
+ + E + + W++ ++TFT A+I G ++ D P GT A+
Sbjct: 80 KFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----RPGHYDYGTQAY 135
Query: 185 AFSPPNGRFHLD-GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGH 234
AF P D G + W HEIGH LGL H
Sbjct: 136 AFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSH 186
>pdb|1SRP|A Chain A, Structural Analysis Of Serratia Protease
Length = 471
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 125 QLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAH 184
+ + E + + W++ ++TFT A+I G ++ D P GT A+
Sbjct: 80 KFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----RPGHYDYGTQAY 135
Query: 185 AFSPPNGRFHLD-GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGH 234
AF P D G + W HEIGH LGL H
Sbjct: 136 AFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSH 186
>pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhibitor
Length = 471
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 125 QLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAH 184
+ + E + + W++ ++TFT A+I G ++ D P GT A+
Sbjct: 80 KFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----RPGHYDYGTQAY 135
Query: 185 AFSPPNGRFHLD-GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGH 234
AF P D G + W HEIGH LGL H
Sbjct: 136 AFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSH 186
>pdb|1SAT|A Chain A, Crystal Structure Of The 50 Kda Metallo Protease From S.
Marcescens
Length = 471
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 125 QLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAH 184
+ + E + + W++ ++TFT A+I G ++ D P GT A+
Sbjct: 80 KFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----RPGHYDYGTQAY 135
Query: 185 AFSPPNGRFHLD-GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGH 234
AF P D G + W HEIGH LGL H
Sbjct: 136 AFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSH 186
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 137 AFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLD 196
+ WS+ +LTFT +A+I G +T D + GT A+A+ P N +
Sbjct: 108 SLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYPGN---YQG 160
Query: 197 GDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGH 234
+W H IGH LGL H
Sbjct: 161 AGSSWYNYNQSNIRNPGSEEYGRQTFTHAIGHALGLAH 198
>pdb|3ZVS|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|3ZVS|C Chain C, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|4A3W|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 2.16 A Resolution Complexed
With Citrate
Length = 160
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 222 AVHEIGHLLGLGHSS 236
AVHEIGH+LGL H S
Sbjct: 115 AVHEIGHVLGLKHCS 129
>pdb|3ZVS|B Chain B, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
Length = 160
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 222 AVHEIGHLLGLGHSS 236
AVHEIGH+LGL H S
Sbjct: 115 AVHEIGHVLGLKHCS 129
>pdb|4AXQ|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution
Length = 163
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 222 AVHEIGHLLGLGHSS 236
AVHEIGH+LGL H S
Sbjct: 118 AVHEIGHVLGLKHCS 132
>pdb|2FSX|A Chain A, Crystal Structure Of Rv0390 From M. Tuberculosis
Length = 148
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 6 KLKKYFHYFGYIPDLPSNFTDDFDDMLESAVKTYQKNFNLEPTGQLDSQTMQH----ILR 61
+ + + + G +PDL S + ++ T+ NF E ++ + QH I
Sbjct: 28 RCEAEWRFVG-VPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPADADQHERPVIFL 86
Query: 62 PRCGNPDIVNGTTTMNSGKPTSYNATSSTNGHLHSVGH 99
R GN I +G +YN GHL + GH
Sbjct: 87 CRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGH 124
>pdb|1QUA|A Chain A, Crystal Structure Of Acutolysin-c, A Hemorrhagic Toxin
From The Snake Venom Of Agkistrodon Acutus, At 2.2 A
Resolution
Length = 197
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 224 HEIGHLLGLGH----SSVEDAIMYPSISSGSRK 252
HE+GH LG+ H S IM P +SSG K
Sbjct: 141 HELGHNLGMNHDGAGCSCATCIMAPVLSSGPAK 173
>pdb|1DI1|A Chain A, Crystal Structure Of Aristolochene Synthase From
Penicillium Roqueforti
pdb|1DI1|B Chain B, Crystal Structure Of Aristolochene Synthase From
Penicillium Roqueforti
pdb|1DGP|A Chain A, Aristolochene Synthase Farnesol Complex
pdb|1DGP|B Chain B, Aristolochene Synthase Farnesol Complex
Length = 300
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 217 DLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGN 269
D +++HE+GH L V A++ ++ S + L+ D++Q ++AL N
Sbjct: 145 DRARLSIHELGHYLEYREKDVGKALL-SALMRFSMGLRLSADELQDMKALEAN 196
>pdb|1YP1|A Chain A, Crystal Structure Of A Non-hemorrhagic Fibrin(ogen)olytic
Metalloproteinase From Venom Of Agkistrodon Acutus
Length = 202
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 218 LESVAVHEIGHLLGLGH-----SSVEDAIMYPSISSGSRKV 253
+ V HE+GH LG+ H + IM PS+SS KV
Sbjct: 135 MAVVMAHELGHNLGMLHDDGYSCDCDVCIMAPSLSSDPTKV 175
>pdb|3LMC|A Chain A, Crystal Structure Of Zinc-Dependent Peptidase From
Methanocorpusculum Labreanum (Strain Z), Northeast
Structural Genomics Consortium Target Mur16
Length = 210
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 224 HEIGHLLGLGHSSVEDAIMY 243
HEIGHL GLGH I Y
Sbjct: 149 HEIGHLFGLGHCDNPGCIXY 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,265,467
Number of Sequences: 62578
Number of extensions: 457051
Number of successful extensions: 1171
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 116
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)