BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021445
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 186/305 (60%), Gaps = 3/305 (0%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
+ PR F D+ IG E GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG F
Sbjct: 14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+IK FMIQ ESIYG KFEDENF KH+++G+LSMANAG NTNGSQFF
Sbjct: 74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
ITT T HLDGKHVVFG+VIKGMGV + +E+V + P I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWGI 192
Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
GDS+PD+P D D ++ + + +K GN +K Q+++MA++KY K LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252
Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKAL 301
++ + ++ + L+ N AC A+ N KAL
Sbjct: 253 VE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310
Query: 302 FRQGQ 306
+R+ Q
Sbjct: 311 YRRAQ 315
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 125/173 (72%), Gaps = 2/173 (1%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M+R + F DI+IG + GRI++E+Y+DV+PKTA NFRALCTGE GIG +G PLH+KG +
Sbjct: 1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSK 59
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I FMIQ ESIYG KF DENF+ KH G+LSMANAGPNTNGSQF
Sbjct: 60 FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
F+ T +T LDGKHVVFGRV++G+ VV+++E + + P+ D I DCG++
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
+ RPRCF DI+I + GR++ E+++DV PKT ENFR LCTGEKG G +T PLHYK
Sbjct: 7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHRV+K FM+Q ESIYG FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FITT T HLDG HVVFG+VI G VVR IE+ T P A+V I CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
+ RPRCF DI+I + GR++ E+++DV PKT ENFR LCTGEKG G +T PLHYK
Sbjct: 7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXL 66
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHRV+K FM+Q ESIYG FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FITT T HLDG HVVFG+VI G VVR IE+ T P A+V I CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 115/173 (66%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
+ RPRCF DI+I + GR++ E+++DV PKT ENFR LCTGEKG G +T PLHYK
Sbjct: 24 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 83
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHRV+K FM+Q ESIYG FEDE+F +KH +LSMAN G +TNGSQF
Sbjct: 84 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FITT T HLDG HVVFG+VI G VVR IE+ T P A+V I CGE+
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 187 bits (474), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/171 (53%), Positives = 114/171 (66%)
Query: 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
R R FLD++I L GRI++E+YND+ P+T NF LCTG G G +G PLHYKG FH
Sbjct: 6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65
Query: 63 RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
RVIK FMIQ ESIYG F+DE F +KH+ ++SMAN GPNTNGSQFFI
Sbjct: 66 RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
TTT HL+ HVVFG+V+ G VV IE++ T + P+ADV I +CGE+
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 114/176 (64%), Gaps = 5/176 (2%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P+ F DISI + GRI++E+Y D +PKTAENFRALCTGEKG G +G PLHYK
Sbjct: 5 MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKG-RSGKPLHYKSSV 63
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELK---HERKGMLSMANAGPNTNG 117
FHRVI FMIQ ESIYG F DE+F K H G LSMANAGPNTNG
Sbjct: 64 FHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNG 123
Query: 118 SQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
SQFFI T T LDGKHVVFGRVI G+ VV+ +E + + + + ++DCGE+
Sbjct: 124 SQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTR-SRIVVSDCGEV 178
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 109/168 (64%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P+C DI I E GRI+ ++++D+ PKT +NF LC+GEKG+G TG L YKG FHR
Sbjct: 20 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHR 79
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
V+K FMIQ ESIYG F+DENF LKH+R +LSMAN G +TNGSQFFIT
Sbjct: 80 VVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFIT 139
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
T HLDG HVVFG VI G V+ IE++ T P ADV + DCG
Sbjct: 140 TKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCG 187
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 113/170 (66%), Gaps = 3/170 (1%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P F D+SIG + GR+ +E++ DV+PKTAENFR CTGE GVP+ YKG FHR
Sbjct: 11 PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFHR 67
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
VIK FMIQ SIY F DENF+L+H G+LSMAN+GP+TNG QFFIT
Sbjct: 68 VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 127
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
++ LDGKHVVFG++I G+ V+R IE+V TG N+ P V I+ CGE+
Sbjct: 128 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
P + DISIG GRI +E++ D +P TAENFRALCTGEKG+G +G PL Y G F
Sbjct: 18 GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMG-QSGKPLCYTGSFF 76
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+I FMIQ ESIYG KF DENF H+ +LSMANAGPNTNGSQFF
Sbjct: 77 HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFF 136
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
ITT LDGKHVVFG+V++GM VV+SIE + N P V IT G
Sbjct: 137 ITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
+ + D+ IG E GR+++ ++ +PKT +NF AL TGEKG G YK +FHRV
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ +SIYG +F DENF+LKH G +SMANAG +TNGSQFFITT
Sbjct: 66 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
+T+ LDGKHVVFG+V++GM VVR +E T D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
+ + D+ IG E GR+++ ++ +PKT +NF AL TGEKG G YK +FHRV
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ +SIYG +F DENF+LKH G +SMANAG +TNGSQFFITT
Sbjct: 66 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
+T+ LDGKHVVFG+V++GM VVR +E T D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P +LD+ + GR+++E+ DV+PKTAENFRALCTGEKG G YKG
Sbjct: 1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHRVI FM Q +SIYG +F DENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG VI+GM VV+ IE + + ITDCG++
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
+ + D+ IG E GR+I ++ +PKT +NF AL TGEKG G YK +FHRV
Sbjct: 17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 68
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ +SIYG +F DENF+LKH G +SMANAG +TNGSQFFITT
Sbjct: 69 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
+T+ LDGKHVVFG+V++GM VVR +E T D P+ DV I DCG+I
Sbjct: 129 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
+ + D+ IG E GR+I ++ +PKT +NF AL TGEKG G YK +FHRV
Sbjct: 7 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 58
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ +SIYG +F DENF+LKH G +SMANAG +TNGSQFFITT
Sbjct: 59 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 118
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
+T+ LDGKHVVFG+V++GM VVR +E T D P+ DV I DCG+I
Sbjct: 119 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG
Sbjct: 20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 71
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 72 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 170 bits (431), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 170 bits (430), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG
Sbjct: 9 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 60
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 61 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 120
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 121 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 172
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
P +LD+ + GR+++E+ DV+PKTAENFRALCTGEKG G YKG F
Sbjct: 3 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 54
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRVI FM Q +SIYG +F DENF LKH G+LSMANAGPNTNGSQFF
Sbjct: 55 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 114
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
I T +T LDGKHVVFG VI+GM VV+ IE + + ITDCG++
Sbjct: 115 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 165
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
P +LD+ + GR+++E+ DV+PKTAENFRALCTGEKG G YKG F
Sbjct: 2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 53
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRVI FM Q +SIYG +F DENF LKH G+LSMANAGPNTNGSQFF
Sbjct: 54 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
I T +T LDGKHVVFG VI+GM VV+ IE + + ITDCG++
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
P +LD+ + GR+++E+ DV+PKTAENFRALCTGEKG G YKG F
Sbjct: 1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 52
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRVI FM Q +SIYG +F DENF LKH G+LSMANAGPNTNGSQFF
Sbjct: 53 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
I T +T LDGKHVVFG VI+GM VV+ IE + + ITDCG++
Sbjct: 113 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 163
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+L+MANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FH++I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
R + F DISI GRII E+++D+ P+T ENFRALCTGEK IG + G LHYK FH
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63 RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
R+I FM Q ESIYG F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61 RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T LDGKHVVFG+VI+GM VVR +E V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVK-RSVVITDCGEL 170
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 106/165 (64%), Gaps = 9/165 (5%)
Query: 7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIK 66
F DI+ G I ++++DV+PKTA NFRALCTGEKG G Y G FHRVI
Sbjct: 5 FFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHRVIP 56
Query: 67 GFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTR 126
FM+Q +SIYG KF DENF+LKH + G+LSMANAGPNTNGSQFFITT
Sbjct: 57 DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVV 116
Query: 127 TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
TS LDGKHVVFG VI GM VV++IE +G P + + I CG
Sbjct: 117 TSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGK-PRSRIEIAKCG 160
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG FHR
Sbjct: 4 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 55
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQFFI
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG FHR
Sbjct: 3 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDG HVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDG HVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 112/171 (65%), Gaps = 11/171 (6%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
PR F DI IG GRI++E+ +D++P+TAENFRALCTGE+G G Y FHR
Sbjct: 11 PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCCFHR 62
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
VI FM Q +SIYG KF+DENF+L+HE G+LSMAN+GPNTNGSQFFI
Sbjct: 63 VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD-VTITDCGEI 173
TT+ LDGKHVVFGRV+ G VV+ +E V G + + V I+ CGE+
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESV--GSKSGKVKEPVIISRCGEL 171
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 167 bits (422), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG FHR
Sbjct: 3 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDGKHVVFG V +GM +V ++E + N +TI DCG++
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
+ F D+ IG + GRI++ ++ +V+PKT ENF AL TGEKG G YKG FHRV
Sbjct: 9 KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHRV 60
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ SIYG F DENF+LKH G +SMANAGP+TNGSQFFIT
Sbjct: 61 IKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T+ + LDGKHVVFG+V+ GM VV SIE T +D P+ D TI + G+I
Sbjct: 121 TKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG FHR
Sbjct: 3 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDGKHVVFG+V +GM +V +++ + N +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGS-RNGKTSKKITIADCGQL 163
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
R + F DISI GRII E+++D+ P+T ENFRALCTGEK IG + G LHYK FH
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63 RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
R+I FM Q ESIYG F DENF +KH++ G+LSMANAGPNTN SQF I
Sbjct: 61 RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
T LDGKHVVFG+VI+GM VVR +E V ITDCGE
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVK-RSVVITDCGE 169
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
+ F D+ IG + GRI++ ++ V+PKT ENF AL TGEKG G YKG +FHRV
Sbjct: 17 KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG--------YKGSKFHRV 68
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ SIYG F DENF+LKH G +SMANAGP+TNGSQFFIT
Sbjct: 69 IKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T+ + LDGKHVVFG+VI GM VV SIE T +D P+ + +I + G+I
Sbjct: 129 TKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG FHR
Sbjct: 8 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 59
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQFFI
Sbjct: 60 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDG HVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 168
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 108/171 (63%), Gaps = 9/171 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
+ P+ ++DI IG + GRI + + +DV+P TAENFR LCT EKG G +KG F
Sbjct: 10 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 61
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+I FM Q +SIYG KF+DENF LKH G+LSMAN+GPNTNGSQFF
Sbjct: 62 HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
+T +T LDGKHVVFG V +G+ V+R IE + D P V I DCGE
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 171
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 108/171 (63%), Gaps = 9/171 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
+ P+ ++DI IG + GRI + + +DV+P TAENFR LCT EKG G +KG F
Sbjct: 2 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 53
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+I FM Q +SIYG KF+DENF LKH G+LSMAN+GPNTNGSQFF
Sbjct: 54 HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
+T +T LDGKHVVFG V +G+ V+R IE + D P V I DCGE
Sbjct: 114 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 163
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
A F +ISI + EGRI+ ++Y++ +PKTA+NFR L TG+ G G YK F
Sbjct: 1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIF 52
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRVI FM+Q +SIYG KF DENF++KH + G+LSMANAG NTNGSQFF
Sbjct: 53 HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
ITT TS LDGKHVVFG VI+G+ +VR +E + A + ITDCG +
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 163
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 110/167 (65%), Gaps = 9/167 (5%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
+ + DI+IG E GR+++ ++ + +PKT ENF+ L +GE G G YKG FHRV
Sbjct: 7 KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHRV 58
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
I+ FMIQ +SIYG +F+DEN ++KH G +SMANAGPN+NGSQFF+TT
Sbjct: 59 IRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH-FVGAVSMANAGPNSNGSQFFVTT 117
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
T LDG+HVVFG+V++GM VV+ +E+ TG ND P V I DCG
Sbjct: 118 APTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 108/168 (64%), Gaps = 9/168 (5%)
Query: 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVI 65
F +ISI + EGRI+ ++Y++ +PKTA+NFR L TG+ G G YK FHRVI
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFHRVI 57
Query: 66 KGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTT 125
FM+Q +SIYG KF DENF++KH + G+LSMANAG NTNGSQFFITT
Sbjct: 58 PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
TS LDGKHVVFG VI+G+ +VR +E + A + ITDCG +
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 164
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 106/169 (62%), Gaps = 9/169 (5%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
+ + D+ + GR++ ++YND++PKTAENFRALCTGEKG G Y G FHRV
Sbjct: 3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG--------YAGSPFHRV 54
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
I FM+Q +SIYG KF DENF+ H+R G+LSMANAGPNTNGSQFFITT
Sbjct: 55 IPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITT 114
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
LDGKHVVFG V+ G +V+ +E + + + A + + GE+
Sbjct: 115 VPCPWLDGKHVVFGEVVDGYDIVKKVESLGS-PSGATKARIVVAKSGEL 162
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YKG FHR
Sbjct: 3 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GF Q +SIYG KFEDENF LKH G+LS ANAGPNTNGSQFFI
Sbjct: 55 IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDGKHVVFG+V +G +V + E + N +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGS-RNGKTSKKITIADCGQL 163
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 104/171 (60%), Gaps = 9/171 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
+ P+ + DI IG + GRI + +DV+P TAENFR LCT EKG G +KG F
Sbjct: 11 SNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG--------FKGSSF 62
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+I F Q +SIYG KF+DENF LKH G+LS AN+GPNTNGSQFF
Sbjct: 63 HRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFF 122
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
+T +T LDGKHVVFG V +G+ V+R IE + D P V I DCGE
Sbjct: 123 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 172
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
+ P F+DI++G G+ E++ +++PKT+ENFR CTGE + +P+ YK F
Sbjct: 58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIF 114
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRVIK FMIQ SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QFF
Sbjct: 115 HRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFF 174
Query: 122 ITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHV-MTGDNDCPIADVTITDCGEI 173
ITT + LDGK+VVFGR+I + +++ IE+V +T P + + +CGE+
Sbjct: 175 ITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 99/169 (58%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
R + D+ IG + GRI++ ++ +PKTA NF L KG G Y G +FHRV
Sbjct: 8 RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHRV 59
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
I FMIQ SIYG KF DENF+LKH G LSMANAG +TNGSQFFITT
Sbjct: 60 IADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITT 119
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
+T LDG+HVVFG++++GM VVR IE D P DV I G I
Sbjct: 120 VKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 99/169 (58%), Gaps = 9/169 (5%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
+ + D+ I E GRI + ++ P T ENFR LCTGE G G YK FHRV
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
I+ FMIQ +SIYG KF DEN +KH G LSMANAGPNTNGSQFFITT
Sbjct: 65 IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T LDG+HVVFG+V+ GM VV IE T +D P+ V I GE+
Sbjct: 124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 103/173 (59%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
M P F D+ E GRI +E++++++P+TAENFRALCTGEKG G +K
Sbjct: 4 MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG--------FKNSI 55
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHRVI F+ Q +SIYG KFEDENF++KH G+LSMAN G NTN SQF
Sbjct: 56 FHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQF 115
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
IT + HLD KHVVFG V GM V+ IE + +TIT+CG+I
Sbjct: 116 VITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSV-CRRITITECGQI 167
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
+ + D+ I E GRI + ++ P T ENFR LCTGE G G YK FHRV
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
I+ FMIQ +SIYG KF DEN +KH G LSMANAGPNTNGSQFFITT
Sbjct: 65 IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T LDG HVVFG+V+ GM VV IE T +D P+ V I GE+
Sbjct: 124 APTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 100/171 (58%), Gaps = 9/171 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
A + D+ E GRI++++ +D++PKTA+NFR LC KG G YKG F
Sbjct: 26 ASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGSTF 77
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+I GFM+Q SIYG KF DENFELKH ++G+LSMAN G +TNGSQFF
Sbjct: 78 HRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFF 137
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCG 171
IT +T LD KHVVFG V++GM VV I + + I DCG
Sbjct: 138 ITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
GRI+ +++ +PKTA+NFR LC G G Y+ FHR+I FMIQ
Sbjct: 22 GRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRESTFHRIIPNFMIQGGDFTR 73
Query: 78 XXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVF 137
SIYG KF DENF KH++KG+LSMANAGPNTNGSQFFITT TS LDGKHVVF
Sbjct: 74 GNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVF 133
Query: 138 GRVI--KGMGVVRSIEHVMTGDNDCPIADVT---ITDCGEI 173
G V K VV+ IE + G + + T I +CGE+
Sbjct: 134 GEVADEKSYSVVKEIEAL--GSSSGSVRSNTRPKIVNCGEL 172
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P +L+ S+G+ I++E+Y PKT +NF L +G +Y G +FHR
Sbjct: 12 PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
+IK FMIQ SIYG +FEDE + +LK G+L+MANAGP+TNGSQFF+
Sbjct: 56 IIKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
T T LDGKH +FGRV +G+G+V + V T D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P +L+ S+G+ I++E+Y PKT +NF L +G +Y G +FHR
Sbjct: 12 PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
+IK FMIQ SIYG +FEDE + +LK G+L+MANAGP+TNGSQFF+
Sbjct: 56 IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
T T LDGKH +FGRV +G+G+V + V T D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P +L+ S+G+ I++E+Y PKT +NF L +G +Y G +FHR
Sbjct: 12 PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
+IK FMIQ SIYG +FEDE + +LK G+L+MANAGP+TNGSQFF+
Sbjct: 56 IIKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
T T LDGKH +FGRV +G+G+V + V T D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 19/157 (12%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
G I +E++ + PKT ENF ALC +Y G FHR IKGFM+Q
Sbjct: 16 GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 78 XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
SI+G KFEDE E LKH +G++SMAN GPNTNGSQFFIT + HLD K+ V
Sbjct: 65 TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
FG+VI G+ + +E + + ND I D+TI
Sbjct: 124 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 160
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 19/157 (12%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
G I +E++ + PKT ENF ALC +Y G FHR IKGFM+Q
Sbjct: 10 GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 78 XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
SI+G KFEDE E LKH +G++SMAN GPNTNGSQFFIT + HLD K+ V
Sbjct: 59 TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
FG+VI G+ + +E + + ND I D+TI
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 92/168 (54%), Gaps = 14/168 (8%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
P+ D +I G I +++ PKT ENF C + +Y G FHR
Sbjct: 17 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRN--------GYYNGHTFHR 65
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
+IKGFMIQ ESI+G +FEDE + L+H+R LSMANAG NTNGSQFFI
Sbjct: 66 IIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITD 169
T T LD KH VFGRV KGM VV+ I +V + D P DV+I +
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 79/151 (52%), Gaps = 13/151 (8%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
G VE+Y PKT NF LC E G Y FHRVI F+IQ
Sbjct: 48 GDFEVELYWYHSPKTCLNFYTLC--EMGF---------YDNTIFHRVIPNFVIQGGDPTG 96
Query: 78 XXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
+SIYG FEDE N ELKH G+LSM+N GPNTN SQFFIT HLDGKH +
Sbjct: 97 TGKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 155
Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
F RV K M + +I V T + PI D+ I
Sbjct: 156 FARVSKNMTCIENIASVQTTATNKPIFDLKI 186
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 81/153 (52%), Gaps = 13/153 (8%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
G I + ++ KT +NF + +Y FHRVIK FM+Q
Sbjct: 15 GDIHISLFYKECKKTVQNFSV-----------HSINGYYNNCIFHRVIKHFMVQTGDPSG 63
Query: 78 XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
ESI+G +FEDE F+ L H + M+SMAN GPNTNGSQFFITT LD KH V
Sbjct: 64 DGTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
FG+V +G +V IE V T D P+ D+ I +
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 17/157 (10%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
G + E++ PK +NF AL +YK FH+ IKGF+IQ
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPTG 74
Query: 78 XXXXXXESIYGLKFEDENF-ELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDG 132
ESIYG F+DE + ELK++R+G+LSMA+ G PNTNGSQFFIT + L+G
Sbjct: 75 TGKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNG 133
Query: 133 KHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
++V+FG++I G + ++E+ + + PI ++ I D
Sbjct: 134 EYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 13/138 (9%)
Query: 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
+G + +E++ D+ PKT ENF LC +Y G FHR I+ F+IQ
Sbjct: 28 KGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT 76
Query: 77 XXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHV 135
ES +G F+DE L H +G+LSMAN+GPN+N SQFFIT ++LD KH
Sbjct: 77 GTGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 136 VFGRVIKGMGVVRSIEHV 153
+FGRV+ G V+ ++E+V
Sbjct: 136 IFGRVVGGFDVLTAMENV 153
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 81/157 (51%), Gaps = 11/157 (7%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPN--TGVP--LHYKGVRFHRVIKGFMIQXX 73
G I + ++ + PKT NF L G K +G P Y G FHRVI+GFMIQ
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 74 XXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG 132
KF DE + EL+ ++ +L+MANAGP TNGSQFFIT +T HL+
Sbjct: 93 DPTGTGRGGPG----YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148
Query: 133 KHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTI 167
+H +FG VI + VV +I T ND P V I
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
G I +E+++ PK NF LC + +Y FHRV+ GF++Q
Sbjct: 34 GDIDIELWSKEAPKACRNFIQLC-----------LEAYYDNTIFHRVVPGFIVQGGDPTG 82
Query: 78 XXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
ESIYG F+DE + L+ R+G+++MANAG + NGSQFF T R L+ KH +
Sbjct: 83 TGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141
Query: 137 FGRV 140
FG+V
Sbjct: 142 FGKV 145
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXX 73
V +G + +E++ D+ P+ ++F LC + ++ FHR I+ FMIQ
Sbjct: 12 VTTQGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGG 60
Query: 74 XXXXXXXXXXESIY-----------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFF 121
+ + G FEDE + L H+ G+LSMAN G ++N S+FF
Sbjct: 61 RAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFF 120
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMT 155
IT HL+ KH +FGRV+ G+ V+R E + T
Sbjct: 121 ITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 41/171 (23%)
Query: 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
G I ++++ D P+TA NF HY G FHRVI GFMIQ
Sbjct: 8 HGTITLKLFADKAPETAANFEQYVKDG-----------HYDGTIFHRVIDGFMIQGGGFE 56
Query: 77 XXXXXXXESIYGLKFEDENFELKHE-------RKGMLSMA-NAGPNTNGSQFFITTTRTS 128
G+K + +K+E +K ++MA P++ +QFFI +
Sbjct: 57 P----------GMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNA 106
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
LD + VFG V++G VV I+ V TG D P+ DV I
Sbjct: 107 FLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 31/165 (18%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX- 76
G I+++ ++D P+T +NF C +G Y FHRVI GFMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF---------YNNTIFHRVINGFMIQGGGFEP 57
Query: 77 -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
E I + N LK+ R G L+MA P++ +QFFI L+
Sbjct: 58 GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
+ VF V+ GM VV I+ V TG D P DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 30/194 (15%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGE------KGIGP---NTGVPL 54
PR ++DI + E+ GR+ ++++ D P ENF L G+ G G N +
Sbjct: 15 PRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINR 74
Query: 55 HYKGVRFHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-------NFELKHERKGMLS 107
Y+G +FH V+ I ++Y DE ++ HE KG+LS
Sbjct: 75 TYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYC----DEPIPPVFGDYFYPHESKGLLS 130
Query: 108 MA----NAGPNTNGSQFFITT--TRTSH----LDGKHVVFGRVIKGMGVVRSIEHVMTGD 157
+ +G S F IT R S+ LD VV G+V G+ V+ I ++
Sbjct: 131 LVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY 190
Query: 158 NDCPIADVTITDCG 171
+I CG
Sbjct: 191 AGRKYPTFSIGKCG 204
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 71/171 (41%), Gaps = 41/171 (23%)
Query: 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
G I +E+ PKT ENF L +KG HY G FHRVI GFMIQ
Sbjct: 12 HGVIKLELDEAKAPKTVENF--LNYVKKG---------HYDGTIFHRVINGFMIQGGGFE 60
Query: 77 XXXXXXXESIYGLKFEDENFELKHERKGML-------SMANAG-PNTNGSQFFITTTRTS 128
GLK + + + +E L +MA P++ +QFFI
Sbjct: 61 P----------GLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNE 110
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
L+ + VFG+V++G +V I+ V TG D P DV I
Sbjct: 111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 69/165 (41%), Gaps = 31/165 (18%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX- 76
G I+++ ++D P+T +NF C +G Y FHRVI GFMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF---------YNNTIFHRVINGFMIQGGGFEP 57
Query: 77 -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
E I + N LK+ R G L+MA P++ +QFFI L+
Sbjct: 58 GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
+ VF V+ GM V I+ V TG D P DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
G I +E+ P + +NF N+G Y FHRVI GFMIQ
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHRVIPGFMIQGGGFTE 62
Query: 78 XXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSHLD-GK-- 133
+ +K E +N L++ R G ++MA A ++ SQFFI + LD G+
Sbjct: 63 QMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 134 --HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEIP 174
+ VFG+V+KGM V I V T D + P V I +P
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
G I +E+ P + +NF N+G Y FHRVI GFMIQ
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHRVIPGFMIQGGGFTE 62
Query: 78 XXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSHLD-GK-- 133
+ +K E +N L++ R G ++MA A ++ SQFFI + LD G+
Sbjct: 63 QMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 134 --HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEIP 174
+ VFG+V+KGM V I V T D + P V I +P
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
G + VE++ P NF LC + +Y FHRV+K F++Q
Sbjct: 31 GDLDVELWARECPLACRNFVQLC-----------LEGYYVNTIFHRVVKDFIVQGGDPTG 79
Query: 78 XXXXXXESIY-GLKFEDENF-ELKHERKGMLSMANAGPN--------------TNGSQFF 121
++ + G F+ E LK +G++ +AN G + TNG+QFF
Sbjct: 80 TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFF 139
Query: 122 ITTTRTSHLDGKHVVFGRV 140
IT R L+ + +FG+V
Sbjct: 140 ITLARADVLNNAYTLFGKV 158
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
+ +V++++ GNE + ++DYK A+ YR AL LD +E E + L + ++
Sbjct: 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 269 NSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQVSI 309
N S C + ++ + N KALFR+ + I
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARI 108
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
SW MN+ + +K G ++K+ YK AL +Y+K + +L+ + K+ +L
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQVSIIL 311
R N + C A+ +N K LFR+G+ + +
Sbjct: 195 RLAS---HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAV 243
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK 261
P + ++V+ ++ GNE +K DY AL Y +AL LD + + +
Sbjct: 18 PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQAL-GLDATPQDQAV---------- 66
Query: 262 TKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQV 307
+ N +AC A+ +VKAL+R+ Q
Sbjct: 67 ----LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
L+ PN W N GN +YK+ DY A+ Y+KAL
Sbjct: 36 LELDPNNAEAWYN-------LGNAYYKQGDYDEAIEYYQKAL 70
Score = 28.1 bits (61), Expect = 5.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
N+ ++ GN +YK+ DY A+ Y+KAL
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 36
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
L+ PN S W N GN +YK+ DY+ A+ Y+KAL
Sbjct: 36 LELDPNNASAWYN-------LGNAYYKQGDYQKAIEYYQKAL 70
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
N+ ++ K GN +YK+ DY+ A+ Y+KAL
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKAL 36
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL--DICWEKEGIDEGKSSSLRKTKSQI 266
+ A D K+ GN +K++ + A+++Y A+ Y+ D ++ G + + ++ K+
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV---KNPC 232
Query: 267 FTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQVSIIL 311
N +AC + + + N KALFR+G+ L
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL 277
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
L+ P W N GN +YK+ DY A+ Y+KAL
Sbjct: 30 LELDPRSAEAWYN-------LGNAYYKQGDYDEAIEYYQKAL 64
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
L+ PN W N GN +YK+ DY A+ Y+KAL
Sbjct: 36 LELDPNNAEAWYN-------LGNAYYKQGDYDEAIEYYQKALE 71
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
L+ PN W N GN +YK+ DY A+ Y+KAL
Sbjct: 70 LELDPNNAEAWYN-------LGNAYYKQGDYDEAIEYYQKALE 105
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
N+ ++ GN +YK+ DY A+ Y+KAL
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 37
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
L+ PN W N GN +YK+ DY A+ Y+KAL
Sbjct: 36 LELYPNNAEAWYN-------LGNAYYKQGDYDEAIEYYQKALE 71
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
L+ PN W N GN +YK+ DY A+ Y+KAL
Sbjct: 70 LELYPNNAEAWYN-------LGNAYYKQGDYDEAIEYYQKALE 105
>pdb|3I04|A Chain A, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|B Chain B, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|C Chain C, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|D Chain D, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 673
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 12 IGVELEGRIIVEIYNDVIPKTAENFRAL 39
+G+E+EG+ ++E+ +V K E+FR L
Sbjct: 149 VGIEVEGKSVLELAQEVGEKALEDFRRL 176
>pdb|1MJG|A Chain A, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|B Chain B, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|C Chain C, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|D Chain D, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1OAO|A Chain A, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|B Chain B, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|A Chain A, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|B Chain B, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|C Chain C, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|D Chain D, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|A Chain A, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|B Chain B, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|C Chain C, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|D Chain D, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 674
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 12 IGVELEGRIIVEIYNDVIPKTAENFRAL 39
+G+E+EG+ ++E+ +V K E+FR L
Sbjct: 150 VGIEVEGKSVLELAQEVGEKALEDFRRL 177
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 219 GNEHYKKQDYKMALRKYRKALR 240
GNE++KK DY A+R Y +A++
Sbjct: 20 GNEYFKKGDYPTAMRHYNEAVK 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,098,712
Number of Sequences: 62578
Number of extensions: 382794
Number of successful extensions: 1060
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 109
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)