Query 021445
Match_columns 312
No_of_seqs 373 out of 2633
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 5.5E-78 1.2E-82 527.7 19.7 309 3-311 8-322 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.1E-52 2.4E-57 338.1 16.8 165 5-177 41-206 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 3.4E-51 7.3E-56 309.3 12.9 168 3-173 10-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 2E-47 4.4E-52 328.5 22.2 174 3-180 52-226 (249)
5 PTZ00060 cyclophilin; Provisio 100.0 4.9E-47 1.1E-51 316.8 21.0 171 1-174 13-183 (183)
6 cd01926 cyclophilin_ABH_like c 100.0 9E-47 1.9E-51 310.9 20.1 164 4-171 1-164 (164)
7 PLN03149 peptidyl-prolyl isome 100.0 6.3E-47 1.4E-51 316.4 19.1 170 1-173 16-186 (186)
8 KOG0881 Cyclophilin type pepti 100.0 4.4E-46 9.5E-51 278.2 9.2 153 3-172 9-162 (164)
9 KOG0111 Cyclophilin-type pepti 100.0 6.6E-46 1.4E-50 303.2 10.1 164 1-173 134-297 (298)
10 cd01923 cyclophilin_RING cyclo 100.0 8.6E-44 1.9E-48 291.3 19.4 151 16-178 7-158 (159)
11 cd01921 cyclophilin_RRM cyclop 100.0 3.3E-43 7.1E-48 290.1 18.5 154 15-180 4-166 (166)
12 COG0652 PpiB Peptidyl-prolyl c 100.0 2.6E-43 5.7E-48 282.6 15.8 146 14-173 5-157 (158)
13 cd01928 Cyclophilin_PPIL3_like 100.0 1.2E-42 2.7E-47 282.5 17.8 149 6-171 3-152 (153)
14 cd01927 cyclophilin_WD40 cyclo 100.0 1.7E-42 3.8E-47 280.3 17.0 143 15-169 4-147 (148)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 9.2E-42 2E-46 275.2 16.5 142 15-169 4-146 (146)
16 cd01925 cyclophilin_CeCYP16-li 100.0 7.4E-41 1.6E-45 277.0 18.8 160 5-181 7-168 (171)
17 KOG0883 Cyclophilin type, U bo 100.0 8.7E-42 1.9E-46 299.6 11.4 158 7-179 279-437 (518)
18 PRK10903 peptidyl-prolyl cis-t 100.0 1.4E-39 3E-44 272.8 18.8 153 3-174 28-190 (190)
19 KOG0884 Similar to cyclophilin 100.0 3.3E-40 7.2E-45 245.2 12.7 151 16-178 8-160 (161)
20 PRK10791 peptidyl-prolyl cis-t 100.0 2.5E-38 5.5E-43 259.5 18.2 145 15-173 6-163 (164)
21 KOG0882 Cyclophilin-related pe 100.0 1.7E-39 3.8E-44 290.4 11.4 147 14-172 410-557 (558)
22 cd01920 cyclophilin_EcCYP_like 100.0 1.3E-37 2.7E-42 253.8 16.7 141 15-169 4-154 (155)
23 KOG0865 Cyclophilin type pepti 100.0 2.6E-38 5.6E-43 255.6 10.3 164 1-173 1-167 (167)
24 PF00160 Pro_isomerase: Cyclop 100.0 2.6E-36 5.6E-41 247.4 17.5 151 7-172 1-155 (155)
25 cd00317 cyclophilin cyclophili 100.0 2.4E-36 5.1E-41 245.1 16.7 142 15-169 4-146 (146)
26 KOG0415 Predicted peptidyl pro 100.0 7.9E-36 1.7E-40 259.3 17.4 155 15-181 7-170 (479)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.8E-36 6E-41 264.0 12.1 162 5-183 14-177 (439)
28 cd01924 cyclophilin_TLP40_like 100.0 3.5E-35 7.6E-40 243.5 14.9 129 14-153 3-165 (176)
29 KOG0543 FKBP-type peptidyl-pro 99.8 8.2E-20 1.8E-24 164.6 11.7 105 204-311 200-304 (397)
30 KOG0545 Aryl-hydrocarbon recep 99.8 1.6E-18 3.5E-23 146.1 10.3 108 203-310 169-276 (329)
31 KOG4234 TPR repeat-containing 99.8 2.7E-18 5.8E-23 140.8 8.9 96 204-312 87-182 (271)
32 KOG0553 TPR repeat-containing 99.7 3.5E-18 7.6E-23 148.5 7.5 87 207-311 76-162 (304)
33 KOG0547 Translocase of outer m 99.7 5E-18 1.1E-22 155.2 6.5 92 202-311 105-196 (606)
34 KOG0551 Hsp90 co-chaperone CNS 99.6 7E-16 1.5E-20 135.4 7.3 88 211-312 80-167 (390)
35 KOG0548 Molecular co-chaperone 99.6 1.7E-15 3.7E-20 140.3 8.0 83 211-311 357-439 (539)
36 KOG4648 Uncharacterized conser 99.5 3E-15 6.6E-20 132.0 3.7 91 204-312 89-179 (536)
37 KOG0550 Molecular chaperone (D 99.5 6.6E-14 1.4E-18 126.2 5.3 96 203-312 240-335 (486)
38 KOG0548 Molecular co-chaperone 99.4 2.5E-13 5.4E-18 126.1 5.4 82 212-311 2-83 (539)
39 TIGR00990 3a0801s09 mitochondr 99.3 6E-12 1.3E-16 125.0 11.3 91 202-311 117-207 (615)
40 KOG4642 Chaperone-dependent E3 99.3 1.1E-12 2.3E-17 110.8 4.9 83 210-310 8-90 (284)
41 PF13414 TPR_11: TPR repeat; P 99.3 6.7E-12 1.4E-16 87.9 6.8 67 211-295 2-69 (69)
42 KOG0376 Serine-threonine phosp 99.3 9.4E-13 2E-17 121.3 1.1 85 210-312 2-86 (476)
43 PLN03088 SGT1, suppressor of 99.2 5.1E-11 1.1E-15 110.3 8.8 82 212-311 2-83 (356)
44 PRK15359 type III secretion sy 99.0 1.2E-09 2.6E-14 88.1 7.6 78 215-310 27-104 (144)
45 PRK15363 pathogenicity island 99.0 2.6E-09 5.7E-14 85.9 9.0 83 211-311 34-116 (157)
46 PRK15359 type III secretion sy 99.0 2.3E-09 5E-14 86.5 7.9 78 216-311 62-139 (144)
47 KOG1308 Hsp70-interacting prot 98.9 2.5E-10 5.3E-15 101.3 -1.4 121 159-311 75-195 (377)
48 KOG0550 Molecular chaperone (D 98.8 3.7E-09 8E-14 95.9 5.3 91 203-311 40-130 (486)
49 PF13432 TPR_16: Tetratricopep 98.8 9.6E-09 2.1E-13 70.9 6.0 64 217-298 2-65 (65)
50 TIGR02552 LcrH_SycD type III s 98.7 6.3E-08 1.4E-12 76.7 8.1 82 212-311 17-98 (135)
51 PF14559 TPR_19: Tetratricopep 98.7 3.8E-08 8.3E-13 68.3 5.8 67 222-306 1-67 (68)
52 PF13371 TPR_9: Tetratricopept 98.7 8.2E-08 1.8E-12 67.7 7.5 70 219-306 2-71 (73)
53 PRK11189 lipoprotein NlpI; Pro 98.7 6.6E-08 1.4E-12 87.5 8.7 83 211-311 63-145 (296)
54 PF13424 TPR_12: Tetratricopep 98.6 2E-07 4.4E-12 66.6 8.4 72 211-293 4-75 (78)
55 KOG1310 WD40 repeat protein [G 98.6 7.3E-08 1.6E-12 90.0 7.3 90 204-311 366-458 (758)
56 KOG4555 TPR repeat-containing 98.6 3E-07 6.5E-12 71.2 8.7 89 204-310 35-127 (175)
57 PRK02603 photosystem I assembl 98.5 6.7E-07 1.4E-11 74.2 10.3 89 208-311 31-119 (172)
58 PLN03088 SGT1, suppressor of 98.5 3.7E-07 8E-12 84.7 9.0 82 212-311 36-117 (356)
59 KOG4626 O-linked N-acetylgluco 98.5 2.7E-07 5.9E-12 87.8 7.5 83 211-311 353-435 (966)
60 PF12895 Apc3: Anaphase-promot 98.5 3E-07 6.5E-12 66.8 5.5 68 225-311 2-71 (84)
61 cd00189 TPR Tetratricopeptide 98.5 9.1E-07 2E-11 63.4 7.9 80 214-311 2-81 (100)
62 PF13414 TPR_11: TPR repeat; P 98.5 4.4E-07 9.6E-12 63.1 5.9 48 264-311 3-50 (69)
63 CHL00033 ycf3 photosystem I as 98.4 1.4E-06 3.1E-11 71.9 9.4 85 210-309 33-117 (168)
64 PRK10370 formate-dependent nit 98.4 1.1E-06 2.4E-11 74.7 8.1 83 211-311 72-157 (198)
65 TIGR02795 tol_pal_ybgF tol-pal 98.4 1.9E-06 4.1E-11 66.1 8.5 85 212-311 2-89 (119)
66 PF13512 TPR_18: Tetratricopep 98.4 1.8E-06 3.9E-11 68.5 8.0 86 211-311 9-97 (142)
67 PF00515 TPR_1: Tetratricopept 98.3 1E-06 2.2E-11 52.3 4.4 33 265-297 2-34 (34)
68 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.2E-06 2.5E-11 81.7 6.8 66 211-294 74-142 (453)
69 TIGR00990 3a0801s09 mitochondr 98.3 2.2E-06 4.7E-11 85.4 8.7 98 213-310 332-445 (615)
70 KOG4626 O-linked N-acetylgluco 98.3 2.2E-06 4.7E-11 81.8 7.8 79 212-308 388-466 (966)
71 PRK15331 chaperone protein Sic 98.3 2.1E-06 4.5E-11 69.6 6.6 83 211-311 36-118 (165)
72 TIGR02552 LcrH_SycD type III s 98.3 4.3E-06 9.3E-11 66.0 8.0 79 212-308 51-131 (135)
73 TIGR03302 OM_YfiO outer membra 98.3 3.5E-06 7.6E-11 73.2 8.1 85 211-310 32-119 (235)
74 KOG0624 dsRNA-activated protei 98.2 2.4E-06 5.2E-11 76.3 6.1 82 211-310 37-118 (504)
75 TIGR02521 type_IV_pilW type IV 98.2 8.5E-06 1.8E-10 69.2 9.1 82 211-310 30-111 (234)
76 KOG0553 TPR repeat-containing 98.2 8E-06 1.7E-10 71.9 8.7 78 215-310 118-195 (304)
77 PRK10866 outer membrane biogen 98.2 7.7E-06 1.7E-10 71.8 8.7 85 211-310 31-118 (243)
78 PF15015 NYD-SP12_N: Spermatog 98.2 1.1E-05 2.3E-10 73.9 9.5 99 214-312 178-276 (569)
79 PRK11189 lipoprotein NlpI; Pro 98.2 7E-06 1.5E-10 74.3 8.5 69 212-298 98-166 (296)
80 PRK15363 pathogenicity island 98.2 6.9E-06 1.5E-10 66.3 7.2 81 212-310 69-151 (157)
81 PF13525 YfiO: Outer membrane 98.1 1.9E-05 4.1E-10 67.4 9.5 86 211-311 4-92 (203)
82 PRK12370 invasion protein regu 98.1 1E-05 2.3E-10 79.5 8.7 76 216-309 342-417 (553)
83 KOG4234 TPR repeat-containing 98.1 1.2E-05 2.7E-10 66.8 7.5 76 212-307 134-209 (271)
84 PRK15179 Vi polysaccharide bio 98.1 1E-05 2.2E-10 81.0 8.3 81 212-310 120-200 (694)
85 KOG1125 TPR repeat-containing 98.1 3.3E-06 7.2E-11 79.9 4.5 78 216-311 434-511 (579)
86 PRK09782 bacteriophage N4 rece 98.1 1.2E-05 2.7E-10 83.3 8.6 80 214-311 611-690 (987)
87 PF07719 TPR_2: Tetratricopept 98.0 1.5E-05 3.3E-10 47.0 4.8 33 265-297 2-34 (34)
88 PF12968 DUF3856: Domain of Un 98.0 0.00021 4.5E-09 54.5 11.7 92 214-311 11-113 (144)
89 PF13428 TPR_14: Tetratricopep 98.0 2.3E-05 5.1E-10 49.4 5.3 42 266-307 3-44 (44)
90 PRK15179 Vi polysaccharide bio 97.9 2.8E-05 6E-10 77.9 8.4 83 211-311 85-167 (694)
91 TIGR02521 type_IV_pilW type IV 97.9 5.6E-05 1.2E-09 64.1 9.0 81 215-311 102-182 (234)
92 COG3063 PilF Tfp pilus assembl 97.9 2.9E-05 6.2E-10 66.0 6.6 84 211-310 102-185 (250)
93 PLN02789 farnesyltranstransfer 97.9 3.7E-05 8E-10 70.2 7.6 72 222-311 47-119 (320)
94 PLN02789 farnesyltranstransfer 97.9 5.1E-05 1.1E-09 69.2 8.5 53 259-311 137-189 (320)
95 KOG1126 DNA-binding cell divis 97.9 2.2E-05 4.9E-10 75.5 5.9 83 211-311 488-570 (638)
96 KOG1155 Anaphase-promoting com 97.9 3.6E-05 7.8E-10 71.4 6.9 77 217-311 335-411 (559)
97 KOG4151 Myosin assembly protei 97.9 1.5E-05 3.2E-10 78.2 4.4 96 203-312 44-141 (748)
98 COG5010 TadD Flp pilus assembl 97.8 5.3E-05 1.1E-09 65.5 6.9 78 214-309 102-179 (257)
99 PF12895 Apc3: Anaphase-promot 97.8 6.9E-05 1.5E-09 54.2 6.4 59 213-290 26-84 (84)
100 KOG2003 TPR repeat-containing 97.8 3.3E-05 7.2E-10 71.5 5.6 83 212-312 490-572 (840)
101 PRK10370 formate-dependent nit 97.8 7.5E-05 1.6E-09 63.5 7.5 67 225-309 52-118 (198)
102 PRK12370 invasion protein regu 97.8 7.1E-05 1.5E-09 73.6 8.4 70 224-311 316-385 (553)
103 PRK09782 bacteriophage N4 rece 97.8 7.1E-05 1.5E-09 77.8 8.1 80 212-309 643-722 (987)
104 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 3.7E-05 8E-10 71.9 5.4 53 259-311 70-125 (453)
105 PRK15174 Vi polysaccharide exp 97.7 0.0001 2.2E-09 74.0 8.6 79 214-310 286-364 (656)
106 KOG0624 dsRNA-activated protei 97.7 2.6E-05 5.6E-10 69.9 3.6 91 206-310 263-353 (504)
107 KOG1126 DNA-binding cell divis 97.7 2.1E-05 4.5E-10 75.7 3.0 100 211-310 420-535 (638)
108 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00013 2.8E-09 55.7 7.0 74 213-301 40-113 (119)
109 KOG0547 Translocase of outer m 97.7 5.4E-05 1.2E-09 70.7 5.4 101 211-311 325-441 (606)
110 COG4783 Putative Zn-dependent 97.7 0.00011 2.4E-09 68.6 7.4 76 218-311 346-421 (484)
111 PF12688 TPR_5: Tetratrico pep 97.7 0.00044 9.5E-09 53.7 9.5 82 214-310 3-87 (120)
112 PRK15174 Vi polysaccharide exp 97.7 0.00014 3.1E-09 72.9 8.5 81 212-310 76-156 (656)
113 PF14853 Fis1_TPR_C: Fis1 C-te 97.7 0.00023 5E-09 46.7 6.5 42 266-307 3-44 (53)
114 KOG1173 Anaphase-promoting com 97.7 0.00017 3.6E-09 68.5 7.9 79 212-308 455-533 (611)
115 PRK11447 cellulose synthase su 97.6 0.00015 3.3E-09 77.4 8.5 76 216-309 355-430 (1157)
116 PF13432 TPR_16: Tetratricopep 97.6 0.0001 2.3E-09 50.4 4.9 44 268-311 1-44 (65)
117 KOG1173 Anaphase-promoting com 97.6 0.00017 3.7E-09 68.4 7.4 86 215-311 417-502 (611)
118 PRK11447 cellulose synthase su 97.6 0.0002 4.3E-09 76.5 8.9 78 214-309 463-540 (1157)
119 KOG1155 Anaphase-promoting com 97.6 0.0002 4.4E-09 66.6 7.7 102 211-312 363-480 (559)
120 KOG0882 Cyclophilin-related pe 97.6 9.1E-05 2E-09 68.2 5.3 147 17-175 111-264 (558)
121 KOG1128 Uncharacterized conser 97.6 0.00011 2.3E-09 71.7 6.0 79 215-311 488-566 (777)
122 PRK10803 tol-pal system protei 97.6 0.00038 8.3E-09 61.7 8.7 84 213-311 143-230 (263)
123 TIGR02917 PEP_TPR_lipo putativ 97.5 0.00025 5.3E-09 72.5 8.3 82 211-310 21-102 (899)
124 PRK02603 photosystem I assembl 97.5 0.00042 9.2E-09 57.3 8.2 69 212-298 72-154 (172)
125 COG3063 PilF Tfp pilus assembl 97.5 0.00048 1E-08 58.8 8.2 81 210-308 33-113 (250)
126 KOG2076 RNA polymerase III tra 97.5 0.00028 6E-09 70.2 7.5 85 210-311 412-496 (895)
127 TIGR02917 PEP_TPR_lipo putativ 97.5 0.00031 6.6E-09 71.8 8.2 30 211-240 124-153 (899)
128 PF03704 BTAD: Bacterial trans 97.5 0.0018 4E-08 51.8 11.0 99 213-311 7-109 (146)
129 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00013 2.9E-09 61.6 4.3 81 211-309 64-144 (297)
130 cd00189 TPR Tetratricopeptide 97.5 0.0003 6.5E-09 49.9 5.7 66 213-296 35-100 (100)
131 PF13181 TPR_8: Tetratricopept 97.5 0.00021 4.5E-09 42.0 4.0 33 265-297 2-34 (34)
132 PRK10049 pgaA outer membrane p 97.4 0.00047 1E-08 70.5 8.8 80 214-311 361-440 (765)
133 PRK11788 tetratricopeptide rep 97.4 0.00098 2.1E-08 62.1 10.3 84 214-310 143-226 (389)
134 PRK10049 pgaA outer membrane p 97.4 0.00055 1.2E-08 70.0 8.6 76 214-308 51-126 (765)
135 KOG4162 Predicted calmodulin-b 97.4 0.00044 9.5E-09 67.9 7.2 82 212-311 684-767 (799)
136 KOG0543 FKBP-type peptidyl-pro 97.4 0.00059 1.3E-08 62.7 7.6 67 216-300 261-327 (397)
137 PF13431 TPR_17: Tetratricopep 97.4 8.7E-05 1.9E-09 44.0 1.5 34 234-285 1-34 (34)
138 PRK11788 tetratricopeptide rep 97.4 0.00073 1.6E-08 63.0 8.3 76 215-308 183-259 (389)
139 PF09976 TPR_21: Tetratricopep 97.4 0.0013 2.9E-08 52.7 8.7 84 212-311 48-131 (145)
140 TIGR03302 OM_YfiO outer membra 97.3 0.0036 7.8E-08 54.2 11.3 90 215-311 110-216 (235)
141 KOG1840 Kinesin light chain [C 97.3 0.00076 1.7E-08 64.9 7.2 73 212-294 241-313 (508)
142 COG4105 ComL DNA uptake lipopr 97.2 0.0013 2.8E-08 57.2 7.7 85 211-310 33-120 (254)
143 PF06552 TOM20_plant: Plant sp 97.2 0.0012 2.6E-08 54.4 7.1 66 228-311 7-82 (186)
144 KOG2003 TPR repeat-containing 97.2 0.00019 4.2E-09 66.5 2.3 80 216-309 241-320 (840)
145 PF13424 TPR_12: Tetratricopep 97.2 0.00078 1.7E-08 47.7 5.0 51 261-311 2-59 (78)
146 KOG4648 Uncharacterized conser 97.2 0.0021 4.5E-08 58.0 8.5 67 215-299 134-200 (536)
147 PF13371 TPR_9: Tetratricopept 97.1 0.00079 1.7E-08 47.0 4.6 41 271-311 2-42 (73)
148 CHL00033 ycf3 photosystem I as 97.1 0.0016 3.5E-08 53.6 7.1 76 212-298 72-154 (168)
149 PF14938 SNAP: Soluble NSF att 97.1 0.0044 9.5E-08 55.6 10.2 89 211-311 113-209 (282)
150 KOG1125 TPR repeat-containing 97.1 0.0023 5E-08 61.1 8.3 76 216-309 289-364 (579)
151 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.0022 4.8E-08 60.0 7.9 76 219-312 207-282 (395)
152 PRK15331 chaperone protein Sic 97.0 0.0019 4.2E-08 52.5 6.5 76 215-310 74-149 (165)
153 smart00028 TPR Tetratricopepti 97.0 0.0014 3.1E-08 36.7 4.1 33 265-297 2-34 (34)
154 KOG3060 Uncharacterized conser 97.0 0.0033 7.2E-08 54.4 7.6 79 211-307 153-234 (289)
155 PF13429 TPR_15: Tetratricopep 96.9 0.0016 3.5E-08 58.2 5.9 99 213-311 147-261 (280)
156 PRK00969 hypothetical protein; 96.9 0.0037 8E-08 59.1 8.1 101 18-152 204-306 (508)
157 TIGR03268 methan_mark_3 putati 96.9 0.0041 8.9E-08 58.6 8.4 101 18-152 201-303 (503)
158 PF06552 TOM20_plant: Plant sp 96.9 0.0044 9.6E-08 51.1 7.5 75 212-306 25-120 (186)
159 PF13176 TPR_7: Tetratricopept 96.9 0.0016 3.5E-08 39.0 3.8 29 266-294 1-29 (36)
160 PRK10803 tol-pal system protei 96.9 0.0037 8.1E-08 55.4 7.3 73 213-300 181-253 (263)
161 COG4235 Cytochrome c biogenesi 96.8 0.0051 1.1E-07 54.6 7.9 82 211-310 155-239 (287)
162 KOG1840 Kinesin light chain [C 96.8 0.0074 1.6E-07 58.2 9.4 91 211-311 324-422 (508)
163 COG1729 Uncharacterized protei 96.7 0.0049 1.1E-07 54.0 7.0 85 212-311 141-228 (262)
164 PF14559 TPR_19: Tetratricopep 96.7 0.0029 6.3E-08 43.3 4.6 38 274-311 1-38 (68)
165 KOG4340 Uncharacterized conser 96.7 0.0017 3.6E-08 57.6 4.1 64 211-292 143-206 (459)
166 COG4070 Predicted peptidyl-pro 96.7 0.0053 1.1E-07 55.9 7.2 104 15-152 200-305 (512)
167 cd05804 StaR_like StaR_like; a 96.7 0.0059 1.3E-07 56.2 7.5 78 214-309 116-197 (355)
168 KOG3785 Uncharacterized conser 96.7 0.013 2.8E-07 53.2 9.1 79 215-311 154-232 (557)
169 PRK10153 DNA-binding transcrip 96.7 0.0056 1.2E-07 59.6 7.5 67 217-302 425-491 (517)
170 PF13174 TPR_6: Tetratricopept 96.6 0.0037 8.1E-08 36.1 4.0 32 266-297 2-33 (33)
171 PF13429 TPR_15: Tetratricopep 96.6 0.0047 1E-07 55.1 6.3 60 215-292 217-276 (280)
172 KOG4814 Uncharacterized conser 96.6 0.011 2.5E-07 57.2 9.0 74 214-299 356-429 (872)
173 PF13431 TPR_17: Tetratricopep 96.6 0.0027 5.8E-08 37.5 3.1 25 287-311 2-26 (34)
174 KOG2002 TPR-containing nuclear 96.6 0.0041 8.9E-08 62.7 6.1 80 213-310 308-388 (1018)
175 TIGR03268 methan_mark_3 putati 96.6 0.015 3.2E-07 55.0 9.2 114 19-152 376-495 (503)
176 KOG2076 RNA polymerase III tra 96.6 0.011 2.5E-07 59.2 9.0 101 211-311 138-254 (895)
177 cd05804 StaR_like StaR_like; a 96.5 0.014 3E-07 53.7 8.9 100 212-311 43-161 (355)
178 KOG2002 TPR-containing nuclear 96.4 0.0096 2.1E-07 60.2 7.2 84 212-311 680-763 (1018)
179 PF10579 Rapsyn_N: Rapsyn N-te 96.4 0.019 4.1E-07 40.6 6.6 68 211-293 5-72 (80)
180 PRK14574 hmsH outer membrane p 96.3 0.017 3.7E-07 59.3 8.8 99 212-310 34-148 (822)
181 PF00515 TPR_1: Tetratricopept 96.2 0.0079 1.7E-07 35.1 3.6 30 212-241 1-30 (34)
182 PF09295 ChAPs: ChAPs (Chs5p-A 96.2 0.011 2.4E-07 55.4 6.4 64 212-293 234-297 (395)
183 PRK00969 hypothetical protein; 96.2 0.032 6.9E-07 52.9 9.1 112 19-152 379-497 (508)
184 PF07719 TPR_2: Tetratricopept 96.1 0.01 2.2E-07 34.5 3.6 30 212-241 1-30 (34)
185 PF10300 DUF3808: Protein of u 96.1 0.038 8.2E-07 53.3 9.4 78 215-307 270-347 (468)
186 KOG0376 Serine-threonine phosp 96.0 0.0073 1.6E-07 56.8 4.1 73 215-305 41-113 (476)
187 PF13374 TPR_10: Tetratricopep 95.9 0.017 3.6E-07 35.1 4.3 31 264-294 2-32 (42)
188 PF04733 Coatomer_E: Coatomer 95.9 0.011 2.3E-07 53.4 4.4 49 263-311 200-248 (290)
189 PF12688 TPR_5: Tetratrico pep 95.8 0.052 1.1E-06 42.1 7.5 80 212-310 38-117 (120)
190 KOG1174 Anaphase-promoting com 95.8 0.027 5.8E-07 52.2 6.6 77 211-305 333-409 (564)
191 PRK14574 hmsH outer membrane p 95.8 0.026 5.7E-07 57.9 7.3 66 213-296 103-168 (822)
192 KOG1156 N-terminal acetyltrans 95.7 0.028 6E-07 54.7 6.6 77 215-309 78-154 (700)
193 PF09976 TPR_21: Tetratricopep 95.7 0.13 2.8E-06 41.0 9.7 87 210-311 9-98 (145)
194 PF13176 TPR_7: Tetratricopept 95.6 0.018 3.9E-07 34.3 3.4 27 215-241 2-28 (36)
195 cd02681 MIT_calpain7_1 MIT: do 95.6 0.066 1.4E-06 37.9 6.6 64 210-274 4-67 (76)
196 KOG1129 TPR repeat-containing 95.6 0.0098 2.1E-07 53.5 2.9 48 260-307 354-404 (478)
197 KOG2471 TPR repeat-containing 95.5 0.029 6.2E-07 53.0 5.9 97 212-310 283-381 (696)
198 PRK14720 transcript cleavage f 95.5 0.061 1.3E-06 55.3 8.7 46 265-310 117-162 (906)
199 KOG3824 Huntingtin interacting 95.5 0.023 5E-07 50.7 5.0 84 205-307 110-193 (472)
200 cd02682 MIT_AAA_Arch MIT: doma 95.5 0.088 1.9E-06 37.1 6.9 65 210-276 4-68 (75)
201 PF12862 Apc5: Anaphase-promot 95.5 0.11 2.3E-06 38.4 7.8 64 222-294 8-71 (94)
202 KOG1130 Predicted G-alpha GTPa 95.3 0.023 4.9E-07 52.7 4.4 86 214-311 197-288 (639)
203 KOG1128 Uncharacterized conser 95.2 0.024 5.1E-07 55.9 4.5 72 212-301 519-590 (777)
204 KOG2796 Uncharacterized conser 95.2 0.018 3.8E-07 50.4 3.1 65 215-297 255-319 (366)
205 PF13428 TPR_14: Tetratricopep 95.2 0.022 4.8E-07 35.6 2.8 41 214-272 3-43 (44)
206 COG4783 Putative Zn-dependent 95.1 0.089 1.9E-06 49.7 7.8 52 260-311 336-387 (484)
207 PF14938 SNAP: Soluble NSF att 95.1 0.085 1.8E-06 47.3 7.5 65 217-293 79-144 (282)
208 KOG4555 TPR repeat-containing 95.1 0.16 3.5E-06 39.8 7.9 75 211-299 76-150 (175)
209 PF04212 MIT: MIT (microtubule 95.1 0.15 3.2E-06 35.2 7.1 37 209-245 2-38 (69)
210 PF12569 NARP1: NMDA receptor- 95.0 0.12 2.7E-06 50.3 8.8 72 219-308 11-82 (517)
211 PRK10747 putative protoheme IX 95.0 0.11 2.3E-06 49.1 8.2 75 219-311 125-200 (398)
212 TIGR00540 hemY_coli hemY prote 94.9 0.11 2.4E-06 49.2 8.1 77 217-311 123-200 (409)
213 PF10602 RPN7: 26S proteasome 94.9 0.31 6.6E-06 40.6 9.8 68 212-294 36-103 (177)
214 KOG3364 Membrane protein invol 94.9 0.11 2.5E-06 40.8 6.5 45 264-308 71-115 (149)
215 PRK14720 transcript cleavage f 94.8 0.17 3.6E-06 52.2 9.5 99 211-310 149-269 (906)
216 COG4070 Predicted peptidyl-pro 94.8 0.089 1.9E-06 48.2 6.5 113 19-152 377-498 (512)
217 KOG2376 Signal recognition par 94.7 0.21 4.6E-06 48.3 9.1 84 212-298 175-258 (652)
218 KOG3060 Uncharacterized conser 94.6 0.25 5.3E-06 43.2 8.6 96 187-310 105-200 (289)
219 PF03704 BTAD: Bacterial trans 94.6 0.15 3.2E-06 40.7 7.0 62 212-291 62-123 (146)
220 cd02683 MIT_1 MIT: domain cont 94.5 0.22 4.9E-06 35.3 7.0 62 211-274 5-66 (77)
221 COG5010 TadD Flp pilus assembl 94.5 0.19 4.2E-06 43.8 7.9 78 213-308 135-212 (257)
222 KOG4340 Uncharacterized conser 94.5 0.1 2.2E-06 46.6 6.2 72 221-310 19-90 (459)
223 KOG1127 TPR repeat-containing 94.5 0.12 2.6E-06 52.9 7.3 78 214-309 4-82 (1238)
224 PF12968 DUF3856: Domain of Un 94.5 0.37 8.1E-06 37.1 8.3 69 217-292 60-128 (144)
225 KOG1130 Predicted G-alpha GTPa 94.3 0.1 2.2E-06 48.5 6.0 67 211-291 16-82 (639)
226 KOG0551 Hsp90 co-chaperone CNS 94.0 0.085 1.8E-06 47.6 4.7 69 215-301 122-190 (390)
227 PF12569 NARP1: NMDA receptor- 94.0 0.15 3.3E-06 49.6 6.9 49 263-311 193-241 (517)
228 PRK10941 hypothetical protein; 93.8 0.35 7.5E-06 43.1 8.3 76 215-308 184-259 (269)
229 cd02684 MIT_2 MIT: domain cont 93.8 0.3 6.6E-06 34.4 6.3 38 209-246 3-40 (75)
230 cd02677 MIT_SNX15 MIT: domain 93.8 0.33 7.2E-06 34.2 6.5 62 209-272 3-64 (75)
231 KOG0545 Aryl-hydrocarbon recep 93.7 0.37 8E-06 42.0 7.8 76 215-308 233-308 (329)
232 KOG1129 TPR repeat-containing 93.7 0.13 2.8E-06 46.5 5.2 84 217-300 228-326 (478)
233 PF10952 DUF2753: Protein of u 93.7 0.7 1.5E-05 35.7 8.5 82 214-298 3-88 (140)
234 KOG1156 N-terminal acetyltrans 93.7 0.16 3.5E-06 49.6 6.2 82 211-310 40-121 (700)
235 COG2956 Predicted N-acetylgluc 93.7 0.28 6.2E-06 44.2 7.3 41 265-305 181-221 (389)
236 COG4976 Predicted methyltransf 93.6 0.11 2.5E-06 44.5 4.6 61 220-298 3-63 (287)
237 cd02678 MIT_VPS4 MIT: domain c 93.6 0.39 8.4E-06 33.8 6.7 37 209-245 3-39 (75)
238 PF13181 TPR_8: Tetratricopept 93.6 0.13 2.8E-06 29.7 3.6 29 213-241 2-30 (34)
239 COG2956 Predicted N-acetylgluc 93.6 0.6 1.3E-05 42.2 9.2 30 211-240 106-135 (389)
240 PRK10941 hypothetical protein; 93.5 0.32 6.9E-06 43.3 7.4 53 260-312 177-229 (269)
241 KOG3785 Uncharacterized conser 93.4 0.29 6.2E-06 44.8 6.9 74 220-310 30-103 (557)
242 PRK11906 transcriptional regul 93.3 0.25 5.4E-06 46.8 6.8 51 259-309 333-383 (458)
243 PF08631 SPO22: Meiosis protei 93.3 0.74 1.6E-05 41.1 9.7 97 203-304 26-127 (278)
244 PF13512 TPR_18: Tetratricopep 93.3 0.18 4E-06 40.1 5.0 70 215-299 50-134 (142)
245 cd02656 MIT MIT: domain contai 93.2 0.42 9.2E-06 33.5 6.4 38 209-246 3-40 (75)
246 PRK11906 transcriptional regul 93.1 0.25 5.5E-06 46.7 6.4 71 216-304 342-412 (458)
247 COG4700 Uncharacterized protei 93.1 0.42 9.2E-06 39.9 6.9 67 213-296 90-156 (251)
248 KOG2376 Signal recognition par 92.8 0.53 1.1E-05 45.7 8.1 42 268-312 83-124 (652)
249 COG1729 Uncharacterized protei 92.8 0.49 1.1E-05 41.7 7.4 77 214-305 180-256 (262)
250 KOG4162 Predicted calmodulin-b 92.8 0.53 1.2E-05 47.0 8.3 81 213-311 651-731 (799)
251 cd02680 MIT_calpain7_2 MIT: do 92.7 0.63 1.4E-05 32.8 6.5 36 209-244 3-38 (75)
252 COG0457 NrfG FOG: TPR repeat [ 92.6 0.87 1.9E-05 36.9 8.6 75 217-309 172-247 (291)
253 smart00745 MIT Microtubule Int 92.6 0.82 1.8E-05 32.2 7.2 38 209-246 5-42 (77)
254 KOG1174 Anaphase-promoting com 92.4 0.34 7.4E-06 45.2 6.1 81 211-309 299-379 (564)
255 PRK10153 DNA-binding transcrip 91.9 0.5 1.1E-05 46.2 7.1 46 264-310 420-465 (517)
256 PF10516 SHNi-TPR: SHNi-TPR; 91.7 0.29 6.3E-06 29.6 3.3 30 265-294 2-31 (38)
257 PF12903 DUF3830: Protein of u 91.7 0.81 1.7E-05 36.6 6.8 109 18-152 8-130 (147)
258 PF02259 FAT: FAT domain; Int 91.5 1.5 3.1E-05 40.1 9.5 97 215-311 187-305 (352)
259 KOG1127 TPR repeat-containing 91.1 0.39 8.5E-06 49.3 5.4 76 215-308 565-640 (1238)
260 PF13374 TPR_10: Tetratricopep 90.9 0.41 8.8E-06 28.7 3.6 33 212-244 2-34 (42)
261 COG4235 Cytochrome c biogenesi 90.8 0.89 1.9E-05 40.6 6.9 52 259-310 151-202 (287)
262 COG0457 NrfG FOG: TPR repeat [ 90.8 1.3 2.8E-05 35.9 7.7 75 221-310 139-214 (291)
263 COG4785 NlpI Lipoprotein NlpI, 90.8 0.2 4.4E-06 42.7 2.7 70 211-298 98-167 (297)
264 PRK10747 putative protoheme IX 90.5 0.82 1.8E-05 43.1 6.9 95 214-310 265-373 (398)
265 KOG1941 Acetylcholine receptor 90.4 1.8 3.9E-05 39.9 8.5 101 211-311 5-135 (518)
266 PF11817 Foie-gras_1: Foie gra 90.3 1.4 3.1E-05 38.6 7.8 65 216-292 182-246 (247)
267 PRK10866 outer membrane biogen 90.1 1.9 4.1E-05 37.8 8.4 69 215-298 72-158 (243)
268 smart00028 TPR Tetratricopepti 90.1 0.46 1E-05 25.6 3.2 27 214-240 3-29 (34)
269 PF13525 YfiO: Outer membrane 89.9 1.2 2.6E-05 37.7 6.8 73 212-299 42-125 (203)
270 TIGR00540 hemY_coli hemY prote 89.7 1.8 3.9E-05 40.9 8.6 82 209-308 81-163 (409)
271 PF09986 DUF2225: Uncharacteri 89.6 2.5 5.5E-05 36.3 8.6 82 215-308 128-210 (214)
272 PF14863 Alkyl_sulf_dimr: Alky 89.6 1.5 3.1E-05 35.1 6.6 47 265-311 71-117 (141)
273 PF04733 Coatomer_E: Coatomer 89.2 0.56 1.2E-05 42.3 4.5 69 212-298 201-270 (290)
274 PF06957 COPI_C: Coatomer (COP 88.9 1.3 2.9E-05 41.8 6.8 92 209-300 201-336 (422)
275 KOG1586 Protein required for f 88.7 3.1 6.7E-05 36.1 8.2 73 226-310 128-207 (288)
276 PF13174 TPR_6: Tetratricopept 88.4 0.79 1.7E-05 25.8 3.3 27 214-240 2-28 (33)
277 KOG3081 Vesicle coat complex C 88.0 1.7 3.6E-05 38.4 6.3 46 264-309 207-252 (299)
278 KOG2796 Uncharacterized conser 87.8 2.3 4.9E-05 37.6 7.0 50 262-311 250-299 (366)
279 cd02679 MIT_spastin MIT: domai 87.3 4.6 9.9E-05 28.8 7.2 69 210-278 6-77 (79)
280 PF07721 TPR_4: Tetratricopept 87.2 0.96 2.1E-05 24.6 3.0 23 266-288 3-25 (26)
281 PF04184 ST7: ST7 protein; In 86.8 3.7 8E-05 39.4 8.3 85 228-312 216-309 (539)
282 KOG1941 Acetylcholine receptor 86.5 1.1 2.4E-05 41.3 4.5 84 215-310 125-218 (518)
283 TIGR03504 FimV_Cterm FimV C-te 86.3 1.4 3.1E-05 27.5 3.7 26 268-293 3-28 (44)
284 COG3947 Response regulator con 86.2 3.2 6.8E-05 37.2 7.1 57 253-309 268-324 (361)
285 PF10516 SHNi-TPR: SHNi-TPR; 85.8 1.7 3.7E-05 26.2 3.7 30 214-243 3-32 (38)
286 KOG0292 Vesicle coat complex C 85.5 4.9 0.00011 41.1 8.8 92 209-300 988-1120(1202)
287 COG2912 Uncharacterized conser 85.3 3 6.6E-05 36.9 6.6 54 259-312 176-229 (269)
288 PF07720 TPR_3: Tetratricopept 85.3 3.2 6.9E-05 24.7 4.7 31 267-297 4-36 (36)
289 PF00244 14-3-3: 14-3-3 protei 85.1 3.2 7E-05 36.2 6.7 55 227-291 141-196 (236)
290 PF04781 DUF627: Protein of un 85.1 3 6.6E-05 31.7 5.6 75 218-307 2-87 (111)
291 KOG1308 Hsp70-interacting prot 84.5 0.43 9.4E-06 43.4 1.0 67 211-295 147-213 (377)
292 KOG4642 Chaperone-dependent E3 83.8 3.2 6.9E-05 36.1 5.8 63 213-293 45-107 (284)
293 PF14561 TPR_20: Tetratricopep 83.5 3.4 7.3E-05 30.2 5.2 40 259-298 17-56 (90)
294 KOG0495 HAT repeat protein [RN 83.3 4.2 9E-05 40.4 7.1 97 215-311 587-698 (913)
295 PF08631 SPO22: Meiosis protei 83.2 10 0.00022 33.8 9.3 62 222-293 3-65 (278)
296 COG2912 Uncharacterized conser 82.5 3.5 7.7E-05 36.5 5.8 74 216-307 185-258 (269)
297 PRK04841 transcriptional regul 80.6 6.8 0.00015 40.9 8.3 69 215-295 694-762 (903)
298 COG3629 DnrI DNA-binding trans 80.2 7.7 0.00017 34.7 7.2 54 257-310 146-199 (280)
299 KOG0686 COP9 signalosome, subu 79.6 10 0.00022 35.5 8.0 82 215-311 153-242 (466)
300 PRK04841 transcriptional regul 79.0 8.3 0.00018 40.2 8.3 64 218-293 497-560 (903)
301 KOG4507 Uncharacterized conser 78.5 3.8 8.2E-05 40.2 5.0 35 266-300 678-712 (886)
302 PF04184 ST7: ST7 protein; In 78.4 12 0.00026 36.1 8.2 59 216-290 263-321 (539)
303 KOG2610 Uncharacterized conser 77.4 7.6 0.00016 35.6 6.3 49 261-309 172-220 (491)
304 smart00101 14_3_3 14-3-3 homol 77.2 8.4 0.00018 33.7 6.5 54 228-291 144-198 (244)
305 KOG1585 Protein required for f 77.0 9.7 0.00021 33.4 6.6 64 215-290 113-176 (308)
306 COG2976 Uncharacterized protei 76.3 13 0.00028 31.4 6.9 62 214-290 91-152 (207)
307 KOG0739 AAA+-type ATPase [Post 76.3 6.3 0.00014 35.6 5.4 38 209-246 7-44 (439)
308 KOG3783 Uncharacterized conser 74.4 14 0.00031 35.8 7.6 78 212-306 267-344 (546)
309 KOG0495 HAT repeat protein [RN 73.7 13 0.00027 37.2 7.1 70 219-306 658-727 (913)
310 PLN03081 pentatricopeptide (PP 73.5 6 0.00013 40.1 5.4 47 264-310 494-540 (697)
311 KOG3824 Huntingtin interacting 73.3 13 0.00028 33.7 6.6 46 264-309 116-161 (472)
312 cd02682 MIT_AAA_Arch MIT: doma 73.1 26 0.00057 24.6 6.9 39 264-302 6-51 (75)
313 KOG2114 Vacuolar assembly/sort 70.6 12 0.00025 38.3 6.3 33 212-244 368-400 (933)
314 PF04781 DUF627: Protein of un 70.3 11 0.00023 28.7 4.7 50 227-294 59-108 (111)
315 PF07079 DUF1347: Protein of u 69.9 21 0.00045 34.1 7.4 59 212-289 462-520 (549)
316 PF10373 EST1_DNA_bind: Est1 D 69.4 13 0.00028 32.6 6.1 57 231-305 1-57 (278)
317 PF15469 Sec5: Exocyst complex 68.6 14 0.00031 30.6 5.7 83 217-302 91-177 (182)
318 KOG1310 WD40 repeat protein [G 67.5 10 0.00023 36.8 5.1 39 259-297 440-478 (758)
319 PF01239 PPTA: Protein prenylt 66.9 17 0.00037 20.3 4.1 30 282-311 1-30 (31)
320 KOG0276 Vesicle coat complex C 66.7 16 0.00035 36.1 6.2 81 210-290 664-747 (794)
321 PF09613 HrpB1_HrpK: Bacterial 66.5 54 0.0012 26.7 8.4 24 217-240 49-72 (160)
322 KOG2471 TPR repeat-containing 65.8 18 0.00039 34.9 6.2 51 258-309 503-553 (696)
323 PF04910 Tcf25: Transcriptiona 65.4 42 0.00091 31.2 8.7 88 211-298 39-138 (360)
324 KOG4507 Uncharacterized conser 65.3 12 0.00026 36.9 5.0 70 224-311 619-689 (886)
325 COG3071 HemY Uncharacterized e 64.8 20 0.00043 33.5 6.1 62 212-292 328-389 (400)
326 PF11207 DUF2989: Protein of u 64.6 8.3 0.00018 32.7 3.5 59 211-284 140-198 (203)
327 COG3118 Thioredoxin domain-con 63.7 16 0.00034 32.9 5.2 53 215-285 137-189 (304)
328 PF10938 YfdX: YfdX protein; 62.8 40 0.00087 27.3 7.1 72 211-292 74-145 (155)
329 KOG1550 Extracellular protein 62.2 31 0.00066 34.2 7.5 62 226-309 342-407 (552)
330 KOG2053 Mitochondrial inherita 61.0 20 0.00043 37.0 5.8 73 218-309 49-121 (932)
331 KOG1839 Uncharacterized protei 58.7 13 0.00028 39.8 4.3 73 210-293 930-1002(1236)
332 COG3898 Uncharacterized membra 56.1 82 0.0018 29.8 8.5 78 221-309 197-274 (531)
333 KOG4563 Cell cycle-regulated h 55.9 66 0.0014 29.9 7.8 93 208-310 37-146 (400)
334 KOG0985 Vesicle coat protein c 55.5 23 0.00049 37.4 5.2 52 214-291 1196-1247(1666)
335 PF14853 Fis1_TPR_C: Fis1 C-te 55.4 35 0.00077 22.1 4.5 26 215-240 4-29 (53)
336 PF01535 PPR: PPR repeat; Int 55.3 22 0.00048 19.1 3.3 28 266-293 2-29 (31)
337 COG5159 RPN6 26S proteasome re 54.7 42 0.0009 30.3 6.2 56 216-281 7-62 (421)
338 smart00386 HAT HAT (Half-A-TPR 54.3 34 0.00073 18.4 4.1 30 278-307 1-30 (33)
339 PF10255 Paf67: RNA polymerase 54.2 15 0.00032 34.7 3.6 33 259-291 159-191 (404)
340 PF05843 Suf: Suppressor of fo 54.2 39 0.00085 30.1 6.3 37 266-302 37-74 (280)
341 PF08969 USP8_dimer: USP8 dime 53.8 21 0.00046 27.1 3.9 45 202-246 28-72 (115)
342 KOG1915 Cell cycle control pro 52.9 70 0.0015 31.0 7.7 73 215-305 76-148 (677)
343 PF09670 Cas_Cas02710: CRISPR- 52.9 1.1E+02 0.0023 28.8 9.2 66 213-294 132-199 (379)
344 PF04212 MIT: MIT (microtubule 52.4 49 0.0011 22.4 5.2 26 266-291 7-32 (69)
345 PLN03077 Protein ECB2; Provisi 52.1 43 0.00094 34.9 7.1 45 266-310 659-703 (857)
346 KOG0546 HSP90 co-chaperone CPR 51.4 9 0.0002 35.2 1.6 42 259-300 304-345 (372)
347 KOG3617 WD40 and TPR repeat-co 51.3 1E+02 0.0022 32.1 8.9 67 225-291 1093-1172(1416)
348 COG3629 DnrI DNA-binding trans 51.2 42 0.00091 30.1 5.8 61 214-292 155-215 (280)
349 KOG1585 Protein required for f 51.1 1.2E+02 0.0027 26.8 8.3 39 271-309 98-140 (308)
350 KOG1586 Protein required for f 49.6 83 0.0018 27.6 7.1 30 263-293 73-102 (288)
351 COG4700 Uncharacterized protei 49.5 1E+02 0.0022 26.2 7.3 46 266-311 91-137 (251)
352 PF14858 DUF4486: Domain of un 49.0 1.4E+02 0.0031 29.3 9.3 89 215-309 154-256 (542)
353 PF02259 FAT: FAT domain; Int 48.6 96 0.0021 28.0 8.1 68 211-296 251-341 (352)
354 PF04126 Cyclophil_like: Cyclo 48.5 22 0.00048 27.4 3.2 47 101-152 60-113 (120)
355 PRK13184 pknD serine/threonine 48.4 44 0.00095 35.3 6.2 34 266-299 554-587 (932)
356 COG4105 ComL DNA uptake lipopr 48.2 68 0.0015 28.2 6.5 47 264-310 34-83 (254)
357 KOG2300 Uncharacterized conser 48.1 1.5E+02 0.0031 29.0 9.0 50 216-280 371-420 (629)
358 KOG1550 Extracellular protein 47.4 58 0.0013 32.2 6.8 62 227-310 308-372 (552)
359 PF11817 Foie-gras_1: Foie gra 47.4 77 0.0017 27.6 6.9 53 229-293 155-207 (247)
360 PLN03218 maturation of RBCL 1; 46.1 79 0.0017 34.0 7.9 28 265-292 685-712 (1060)
361 PF14863 Alkyl_sulf_dimr: Alky 46.1 44 0.00096 26.6 4.7 32 209-240 67-98 (141)
362 COG3947 Response regulator con 45.4 48 0.001 30.0 5.1 56 216-289 283-338 (361)
363 PF04010 DUF357: Protein of un 45.3 42 0.0009 23.6 3.9 42 202-243 25-66 (75)
364 KOG3081 Vesicle coat complex C 45.0 58 0.0013 29.0 5.5 67 214-298 209-276 (299)
365 KOG0529 Protein geranylgeranyl 44.8 81 0.0017 29.8 6.7 46 259-304 104-151 (421)
366 COG3071 HemY Uncharacterized e 44.7 94 0.002 29.1 7.1 101 210-310 82-199 (400)
367 smart00745 MIT Microtubule Int 44.4 81 0.0017 21.7 5.4 27 270-296 14-47 (77)
368 PLN03218 maturation of RBCL 1; 44.1 1E+02 0.0022 33.2 8.3 79 214-294 509-609 (1060)
369 COG4455 ImpE Protein of avirul 44.0 50 0.0011 28.6 4.9 65 217-299 6-70 (273)
370 PF05843 Suf: Suppressor of fo 43.6 1.3E+02 0.0028 26.8 7.9 70 216-303 39-111 (280)
371 PLN03081 pentatricopeptide (PP 43.3 27 0.00059 35.4 3.9 34 260-293 524-557 (697)
372 PF08424 NRDE-2: NRDE-2, neces 43.2 1.3E+02 0.0027 27.5 7.9 70 225-294 115-184 (321)
373 PF09986 DUF2225: Uncharacteri 42.7 1.8E+02 0.0039 24.9 8.2 80 221-311 86-178 (214)
374 COG0790 FOG: TPR repeat, SEL1 40.8 1.1E+02 0.0025 26.9 7.2 65 225-309 90-159 (292)
375 TIGR00756 PPR pentatricopeptid 40.4 62 0.0014 17.5 4.0 28 266-293 2-29 (35)
376 PF11314 DUF3117: Protein of u 40.0 18 0.00039 22.9 1.2 23 6-30 19-41 (51)
377 PF13812 PPR_3: Pentatricopept 39.3 67 0.0014 17.5 4.2 27 266-292 3-29 (34)
378 PF12854 PPR_1: PPR repeat 39.0 70 0.0015 18.3 3.7 26 264-289 7-32 (34)
379 PF02064 MAS20: MAS20 protein 38.9 34 0.00073 26.5 2.9 29 215-243 66-94 (121)
380 KOG4151 Myosin assembly protei 38.9 48 0.001 33.7 4.6 70 215-302 96-165 (748)
381 PF02184 HAT: HAT (Half-A-TPR) 38.1 79 0.0017 18.3 3.6 28 278-306 1-28 (32)
382 cd02679 MIT_spastin MIT: domai 37.3 73 0.0016 22.6 4.2 24 268-291 12-35 (79)
383 cd02681 MIT_calpain7_1 MIT: do 37.3 1.5E+02 0.0032 20.9 6.3 26 266-291 8-33 (76)
384 KOG4814 Uncharacterized conser 37.2 1.9E+02 0.0041 29.3 8.1 50 263-312 353-408 (872)
385 PF10300 DUF3808: Protein of u 37.2 1.1E+02 0.0023 29.6 6.7 62 215-293 308-376 (468)
386 cd00280 TRFH Telomeric Repeat 36.8 1.4E+02 0.0029 25.2 6.2 34 266-300 113-146 (200)
387 KOG2709 Uncharacterized conser 36.6 99 0.0021 29.4 5.9 43 203-245 13-55 (560)
388 cd02678 MIT_VPS4 MIT: domain c 36.6 1.3E+02 0.0029 20.7 5.5 15 281-295 30-44 (75)
389 PF12862 Apc5: Anaphase-promot 36.5 1.2E+02 0.0026 21.9 5.5 33 212-244 41-73 (94)
390 PF10602 RPN7: 26S proteasome 36.4 1.1E+02 0.0024 25.2 5.8 34 260-293 32-65 (177)
391 PF08424 NRDE-2: NRDE-2, neces 36.1 2.2E+02 0.0047 25.9 8.3 62 225-304 44-105 (321)
392 KOG1070 rRNA processing protei 35.5 2.2E+02 0.0047 31.6 8.8 46 265-310 1531-1576(1710)
393 PF13281 DUF4071: Domain of un 35.3 1.8E+02 0.004 27.2 7.6 45 266-310 181-229 (374)
394 PF03745 DUF309: Domain of unk 34.4 1.4E+02 0.0031 19.9 6.5 59 216-286 3-61 (62)
395 PF07219 HemY_N: HemY protein 34.0 95 0.0021 23.2 4.7 33 208-240 55-87 (108)
396 KOG0889 Histone acetyltransfer 33.9 1.7E+02 0.0036 35.5 8.1 51 260-310 2808-2858(3550)
397 COG4649 Uncharacterized protei 33.8 1.3E+02 0.0028 25.2 5.6 51 260-311 163-213 (221)
398 COG2976 Uncharacterized protei 33.3 3E+02 0.0066 23.4 8.7 83 224-309 46-137 (207)
399 KOG2047 mRNA splicing factor [ 32.9 1.6E+02 0.0034 29.8 6.9 77 214-303 513-590 (835)
400 COG5191 Uncharacterized conser 32.7 50 0.0011 30.2 3.3 71 215-303 110-181 (435)
401 KOG2300 Uncharacterized conser 32.6 3.7E+02 0.008 26.3 9.1 83 214-307 48-136 (629)
402 cd02656 MIT MIT: domain contai 32.5 1.7E+02 0.0036 20.1 5.4 22 270-291 12-33 (75)
403 PF07980 SusD: SusD family; I 32.5 74 0.0016 27.4 4.5 30 263-292 132-161 (266)
404 KOG4056 Translocase of outer m 32.0 1.8E+02 0.0038 23.1 5.8 39 204-242 73-111 (143)
405 PF05131 Pep3_Vps18: Pep3/Vps1 31.9 40 0.00087 27.0 2.4 21 273-293 112-133 (147)
406 cd02683 MIT_1 MIT: domain cont 31.8 1.7E+02 0.0037 20.5 5.4 25 267-291 9-33 (77)
407 KOG0396 Uncharacterized conser 31.3 2.7E+02 0.0059 25.9 7.8 46 265-310 192-237 (389)
408 PF14689 SPOB_a: Sensor_kinase 31.0 1.6E+02 0.0035 19.5 7.4 27 266-292 25-51 (62)
409 KOG3617 WD40 and TPR repeat-co 30.7 1.4E+02 0.003 31.2 6.3 26 265-290 859-884 (1416)
410 PF04048 Sec8_exocyst: Sec8 ex 30.4 2.7E+02 0.0059 21.9 7.2 46 264-309 75-120 (142)
411 KOG1915 Cell cycle control pro 30.3 2.1E+02 0.0045 28.0 7.0 52 225-294 450-501 (677)
412 PF05913 DUF871: Bacterial pro 29.8 33 0.00071 31.9 1.8 51 101-152 298-349 (357)
413 KOG2396 HAT (Half-A-TPR) repea 29.4 1.4E+02 0.0029 29.2 5.7 41 261-301 136-177 (568)
414 PLN03077 Protein ECB2; Provisi 28.6 1.1E+02 0.0024 31.9 5.6 28 265-292 456-483 (857)
415 KOG1464 COP9 signalosome, subu 28.6 1.5E+02 0.0033 26.6 5.5 54 224-291 39-92 (440)
416 PF12753 Nro1: Nuclear pore co 28.4 73 0.0016 30.0 3.7 36 231-279 330-365 (404)
417 TIGR02710 CRISPR-associated pr 28.4 2.1E+02 0.0045 26.9 6.8 61 216-289 134-196 (380)
418 TIGR00985 3a0801s04tom mitocho 28.3 1E+02 0.0023 24.7 4.2 32 212-243 90-122 (148)
419 KOG2396 HAT (Half-A-TPR) repea 28.0 1.6E+02 0.0034 28.8 5.9 44 263-306 104-147 (568)
420 PF04910 Tcf25: Transcriptiona 27.7 66 0.0014 29.9 3.4 58 225-291 7-67 (360)
421 PF02561 FliS: Flagellar prote 27.0 2.9E+02 0.0062 21.0 9.8 81 209-291 26-108 (122)
422 PRK05685 fliS flagellar protei 26.9 3.1E+02 0.0066 21.4 9.2 81 209-291 32-114 (132)
423 PF04053 Coatomer_WDAD: Coatom 26.8 1.8E+02 0.0038 28.0 6.2 29 211-239 346-374 (443)
424 PF13041 PPR_2: PPR repeat fam 25.5 1.7E+02 0.0037 17.9 6.0 39 264-302 3-42 (50)
425 PF09613 HrpB1_HrpK: Bacterial 25.4 93 0.002 25.4 3.5 58 226-295 51-108 (160)
426 KOG2709 Uncharacterized conser 24.9 1.3E+02 0.0029 28.5 4.7 27 266-292 24-50 (560)
427 PF05168 HEPN: HEPN domain; I 24.9 1.2E+02 0.0026 22.2 4.0 35 207-241 3-37 (118)
428 cd08977 SusD starch binding ou 24.7 2.1E+02 0.0046 26.1 6.3 34 260-293 172-210 (359)
429 TIGR02561 HrpB1_HrpK type III 24.4 2.3E+02 0.005 22.9 5.5 51 261-311 41-91 (153)
430 KOG2422 Uncharacterized conser 23.4 7.6E+02 0.017 24.8 10.2 86 212-298 284-377 (665)
431 KOG2041 WD40 repeat protein [G 23.3 1E+02 0.0022 31.4 3.8 74 213-312 797-873 (1189)
432 PF05942 PaREP1: Archaeal PaRE 23.0 1.2E+02 0.0026 23.0 3.5 32 209-240 3-34 (115)
433 COG4391 Uncharacterized protei 22.9 60 0.0013 21.8 1.5 11 2-12 35-45 (62)
434 PF13838 Clathrin_H_link: Clat 22.9 90 0.0019 21.4 2.5 21 215-235 9-29 (66)
435 COG0790 FOG: TPR repeat, SEL1 22.4 4.2E+02 0.009 23.2 7.6 58 229-308 172-233 (292)
436 PF10276 zf-CHCC: Zinc-finger 22.3 61 0.0013 19.7 1.4 11 2-12 15-25 (40)
437 KOG4509 Uncharacterized conser 22.1 3E+02 0.0065 22.9 5.7 37 208-244 11-47 (247)
438 PF10345 Cohesin_load: Cohesin 22.0 6.6E+02 0.014 25.1 9.5 73 211-296 58-131 (608)
439 PF12309 KBP_C: KIF-1 binding 22.0 2.3E+02 0.0049 26.6 5.8 71 228-299 265-344 (371)
440 PF15469 Sec5: Exocyst complex 21.8 4.1E+02 0.0088 21.7 6.8 27 268-295 91-117 (182)
441 PF05053 Menin: Menin; InterP 21.2 1.4E+02 0.0031 29.5 4.3 48 230-290 297-344 (618)
442 PF07219 HemY_N: HemY protein 21.0 3.6E+02 0.0077 20.0 6.8 50 260-309 55-104 (108)
443 KOG1070 rRNA processing protei 20.7 3.6E+02 0.0078 30.1 7.3 95 215-309 1567-1681(1710)
444 cd02684 MIT_2 MIT: domain cont 20.6 3E+02 0.0066 19.1 5.1 18 274-291 16-33 (75)
445 PF15015 NYD-SP12_N: Spermatog 20.3 1.2E+02 0.0026 29.0 3.4 33 259-291 257-289 (569)
446 KOG2239 Transcription factor c 20.2 1.7E+02 0.0037 24.7 4.0 29 200-228 170-198 (209)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-78 Score=527.73 Aligned_cols=309 Identities=56% Similarity=0.855 Sum_probs=287.7
Q ss_pred CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (312)
Q Consensus 3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (312)
||+|||||+|+|.+.||||||||.|.||+||+||..||+|..|.+..+++++.|+|+.||||+++|||||||++.++|+|
T Consensus 8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG 87 (372)
T KOG0546|consen 8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG 87 (372)
T ss_pred CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence 79999999999999999999999999999999999999999997788999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (312)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~ 162 (312)
|.||||.+|+||++.++|+++++|||||.|||+||||||||+.+.|||||+|+|||+||+|++||+.|++..++...+|.
T Consensus 88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~ 167 (372)
T KOG0546|consen 88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL 167 (372)
T ss_pred cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred cceEEeeeeeeCCC----CCCCCCccCCCCCCCCCCCCCCCC-CCCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHH
Q 021445 163 ADVTITDCGEIPEG----ADDGISNFFNDGDSYPDWPADLDQ-TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRK 237 (312)
Q Consensus 163 ~~i~I~~~g~l~~~----~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~k 237 (312)
.+|.|.+||+|... ..+..+..+..+|.++++++++.. ...+..+.++.++..|+.||..|++++|..|...|.+
T Consensus 168 ~dV~I~dCGel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k 247 (372)
T KOG0546|consen 168 ADVVISDCGELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRK 247 (372)
T ss_pred cceEecccccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHH
Confidence 99999999999987 566667778899999999977655 7888899999999999999999999999999999999
Q ss_pred HHHHhhhccccCCCCchh-hhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 238 ALRYLDICWEKEGIDEGK-SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 238 al~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
++++++..+.......++ ...+.+....++.|.++|-++++.+..|+..|..+++.++...||+|||+++++.+
T Consensus 248 ~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~ 322 (372)
T KOG0546|consen 248 ALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLL 322 (372)
T ss_pred HhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhh
Confidence 999998633222222222 35578888999999999999999999999999999999999999999999999865
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-52 Score=338.08 Aligned_cols=165 Identities=64% Similarity=1.088 Sum_probs=158.1
Q ss_pred eEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhh-CCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCC
Q 021445 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCT-GEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG 83 (312)
Q Consensus 5 ~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~-~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~ 83 (312)
+|||||.+++...|||+|.||+..+|+||+||..||. +.++. .|.|+.||||+|||||||||++.++|+|+
T Consensus 41 kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~--------gY~gS~FhRVi~nfmIQGGd~t~g~gtGg 112 (217)
T KOG0880|consen 41 KVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGY--------GYKGSKFHRVIPNFMIQGGDFTKGDGTGG 112 (217)
T ss_pred EEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCc--------ccCCceeeeeecCceeecCccccCCCCCC
Confidence 7999999999999999999999999999999999999 44443 49999999999999999999999999999
Q ss_pred CcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCccc
Q 021445 84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA 163 (312)
Q Consensus 84 ~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~ 163 (312)
.++||.+|+|||+.++|.++|.||||+.||++||||||||+...+||||+|+|||+|++||++|.+|+...++.+++|.+
T Consensus 113 ~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e 192 (217)
T KOG0880|consen 113 KSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLE 192 (217)
T ss_pred eEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeeeeeCCCC
Q 021445 164 DVTITDCGEIPEGA 177 (312)
Q Consensus 164 ~i~I~~~g~l~~~~ 177 (312)
+++|.+||.++...
T Consensus 193 ~v~I~~~g~l~~~~ 206 (217)
T KOG0880|consen 193 DVVIANCGELPVEY 206 (217)
T ss_pred cEEEeecCcccccc
Confidence 99999999996433
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-51 Score=309.27 Aligned_cols=168 Identities=58% Similarity=0.994 Sum_probs=162.8
Q ss_pred CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (312)
Q Consensus 3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (312)
||.||||++++|.++|||.||||.+.+|+|++||.+.|+|.- ...++|+-|++++||||+++|||||||+..++|+|
T Consensus 10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~---r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG 86 (177)
T KOG0879|consen 10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEY---RKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_pred CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccc---ccCCccccccccchHHHhhhheeccCceecCCCce
Confidence 899999999999999999999999999999999999999863 35788889999999999999999999999999999
Q ss_pred CCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (312)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~ 162 (312)
..+||+.+|+||++.++|..+|+|||+++|++++|+|||||..+..+||++|+|||+|++|+.++++|+++|+..+.+|.
T Consensus 87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK 166 (177)
T KOG0879|consen 87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK 166 (177)
T ss_pred EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeeee
Q 021445 163 ADVTITDCGEI 173 (312)
Q Consensus 163 ~~i~I~~~g~l 173 (312)
-+|.|+.||.+
T Consensus 167 l~v~i~qCGem 177 (177)
T KOG0879|consen 167 LPVVIVQCGEM 177 (177)
T ss_pred CcEEEeecccC
Confidence 99999999964
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2e-47 Score=328.49 Aligned_cols=174 Identities=39% Similarity=0.629 Sum_probs=160.7
Q ss_pred CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecC-CeEEeCCCCCCCCC
Q 021445 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKG-FMIQGGDISAGDGT 81 (312)
Q Consensus 3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~-~~iq~G~~~~~~~~ 81 (312)
+|+|||||++++...|+|+||||.+.||+||+||++||++..+.+..++.+++|+|+.||||+++ ++||+||+..
T Consensus 52 ~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~---- 127 (249)
T PTZ00221 52 SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS---- 127 (249)
T ss_pred CCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----
Confidence 89999999999999999999999999999999999999998776666677778999999999986 8999999753
Q ss_pred CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445 82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (312)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P 161 (312)
++.+++|.+|.+|++.++|+++|+|+|++.|++++|||||||+++.|+||++|+|||+|++||+||++|+.++++..++|
T Consensus 128 ~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP 207 (249)
T PTZ00221 128 FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRP 207 (249)
T ss_pred CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCC
Confidence 23467789999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred ccceEEeeeeeeCCCCCCC
Q 021445 162 IADVTITDCGEIPEGADDG 180 (312)
Q Consensus 162 ~~~i~I~~~g~l~~~~~~~ 180 (312)
..+|+|.+||++..+-+.+
T Consensus 208 ~~~V~I~~Cgvl~~~~p~~ 226 (249)
T PTZ00221 208 LLPVTVSFCGALTGEKPPG 226 (249)
T ss_pred CCCeEEEECeEecCCCCCc
Confidence 9999999999998766664
No 5
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=4.9e-47 Score=316.80 Aligned_cols=171 Identities=62% Similarity=1.012 Sum_probs=157.3
Q ss_pred CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCC
Q 021445 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (312)
Q Consensus 1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (312)
|.||+||||+++++++.|+|+||||.+.||++|+||++||++...+. +++..+|+|+.||||+|+++|||||+..+.|
T Consensus 13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence 45899999999999999999999999999999999999999864321 3445699999999999999999999887778
Q ss_pred CCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCC
Q 021445 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (312)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~ 160 (312)
.++.+++|..+++|...++|.++|+|+|++.++++++||||||+++.|+||++|+|||||++||+||++|+..++. +++
T Consensus 91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~ 169 (183)
T PTZ00060 91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGY 169 (183)
T ss_pred CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCC
Confidence 8888999999999988999999999999999999999999999999999999999999999999999999998885 489
Q ss_pred cccceEEeeeeeeC
Q 021445 161 PIADVTITDCGEIP 174 (312)
Q Consensus 161 P~~~i~I~~~g~l~ 174 (312)
|..+|+|.+||+++
T Consensus 170 P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 170 PKKPVVVTDCGELQ 183 (183)
T ss_pred CcCCeEEEEeEEcC
Confidence 99999999999973
No 6
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=9e-47 Score=310.88 Aligned_cols=164 Identities=67% Similarity=1.132 Sum_probs=152.4
Q ss_pred CeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCC
Q 021445 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG 83 (312)
Q Consensus 4 ~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~ 83 (312)
|+||||++++|++.|+|+||||.+.||++|+||++||++.++++. +..+|+++.||||+|+++||+||+..+++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 899999999999999999999999999999999999997543221 33489999999999999999999877778888
Q ss_pred CcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCccc
Q 021445 84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA 163 (312)
Q Consensus 84 ~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~ 163 (312)
.++++..+++|+..++|+++|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|++++++ +++|..
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~ 156 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK 156 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence 8999999999988899999999999999999999999999999999999999999999999999999999998 799999
Q ss_pred ceEEeeee
Q 021445 164 DVTITDCG 171 (312)
Q Consensus 164 ~i~I~~~g 171 (312)
+|+|.+||
T Consensus 157 ~i~I~~cG 164 (164)
T cd01926 157 KVVIADCG 164 (164)
T ss_pred CeEEEECC
Confidence 99999997
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=6.3e-47 Score=316.40 Aligned_cols=170 Identities=59% Similarity=0.970 Sum_probs=156.1
Q ss_pred CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCC
Q 021445 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (312)
Q Consensus 1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (312)
|.||+||||++++++..|+|+||||.+.||++|+||++||+++... .+.+..|+++.||||+|+++|||||+..++|
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g 92 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence 4589999999999999999999999999999999999999976311 1222349999999999999999999877788
Q ss_pred CCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEE-eChHHHHHHhcccCCCCC
Q 021445 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDND 159 (312)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~-~G~~vl~~i~~~~~~~~~ 159 (312)
+++.++++..|++|++.++|+++|+|+|++.++++++||||||+++.|+||++|+|||+|+ +||++|++|+.++++.++
T Consensus 93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~ 172 (186)
T PLN03149 93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN 172 (186)
T ss_pred CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence 8888999999999988899999999999999999999999999999999999999999999 799999999999998889
Q ss_pred CcccceEEeeeeee
Q 021445 160 CPIADVTITDCGEI 173 (312)
Q Consensus 160 ~P~~~i~I~~~g~l 173 (312)
+|..+|+|.+||++
T Consensus 173 ~P~~~i~I~~cG~~ 186 (186)
T PLN03149 173 RPKLACVISECGEM 186 (186)
T ss_pred CCcCCeEEEeCEeC
Confidence 99999999999984
No 8
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-46 Score=278.23 Aligned_cols=153 Identities=54% Similarity=0.859 Sum_probs=146.6
Q ss_pred CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (312)
Q Consensus 3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (312)
-|.|+++++ +|.|++|||-..||+||.||.+|++.+ ||+|+.||||+++|+|||||++ +.|.|
T Consensus 9 ~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrg-----------YYn~v~FHRii~DFmiQGGDPT-GTGRG 71 (164)
T KOG0881|consen 9 PPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRG-----------YYNGVIFHRIIKDFMIQGGDPT-GTGRG 71 (164)
T ss_pred CCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhcc-----------cccceeeeehhhhheeecCCCC-CCCCC
Confidence 578999988 899999999999999999999999998 9999999999999999999987 88999
Q ss_pred CCcccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445 83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (312)
Q Consensus 83 ~~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P 161 (312)
+.+|||..|+||-. .++|..+|.|||++.||++|||||||||++.+||||+|++||||+.||+|+..+..+.+++.++|
T Consensus 72 GaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRP 151 (164)
T KOG0881|consen 72 GASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRP 151 (164)
T ss_pred ccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCC
Confidence 99999999999965 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeeeee
Q 021445 162 IADVTITDCGE 172 (312)
Q Consensus 162 ~~~i~I~~~g~ 172 (312)
..+++|.+.-.
T Consensus 152 i~~~kIika~~ 162 (164)
T KOG0881|consen 152 IDEVKIIKAYP 162 (164)
T ss_pred ccceeeEeeec
Confidence 99999988754
No 9
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-46 Score=303.22 Aligned_cols=164 Identities=59% Similarity=1.015 Sum_probs=159.6
Q ss_pred CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCC
Q 021445 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (312)
Q Consensus 1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (312)
|++|+||+++.|++...|||+++|..+..|+|++||..||++..|+| |.|++||||+|.||+||||+++++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence 67999999999999999999999999999999999999999999887 9999999999999999999999999
Q ss_pred CCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCC
Q 021445 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (312)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~ 160 (312)
+|+.+|||.+|.||++.|+|..+|+|||+++|+|+|||||||++....|||++|+|||.|++||+||+++++..+.. ++
T Consensus 206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsks-gk 284 (298)
T KOG0111|consen 206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKS-GK 284 (298)
T ss_pred CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987666 99
Q ss_pred cccceEEeeeeee
Q 021445 161 PIADVTITDCGEI 173 (312)
Q Consensus 161 P~~~i~I~~~g~l 173 (312)
|.+.|.|.+||.+
T Consensus 285 p~qkv~i~~cge~ 297 (298)
T KOG0111|consen 285 PQQKVKIVECGEI 297 (298)
T ss_pred cceEEEEEecccc
Confidence 9999999999986
No 10
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=8.6e-44 Score=291.30 Aligned_cols=151 Identities=48% Similarity=0.804 Sum_probs=142.9
Q ss_pred eeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCCc
Q 021445 16 LEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDEN 95 (312)
Q Consensus 16 ~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 95 (312)
+.|+|+||||.+.||++|+||++||+.+ ||+|+.||||+|+++|||||+. ++|.++.++++.++++|.
T Consensus 7 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~ 74 (159)
T cd01923 7 NKGDLNLELHCDKAPKACENFIKLCKKG-----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF 74 (159)
T ss_pred ccccEEEEEeCCCChHHHHHHHHHHhcC-----------ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCccc
Confidence 4899999999999999999999999987 8999999999999999999986 678888899999999985
Q ss_pred c-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEeeeeeeC
Q 021445 96 F-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174 (312)
Q Consensus 96 ~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~~g~l~ 174 (312)
. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++||++|++|+.++++.+++|..+|+|.+|.++.
T Consensus 75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 4 688999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCCC
Q 021445 175 EGAD 178 (312)
Q Consensus 175 ~~~~ 178 (312)
+||+
T Consensus 155 dpf~ 158 (159)
T cd01923 155 DPFE 158 (159)
T ss_pred CCCC
Confidence 8886
No 11
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=3.3e-43 Score=290.07 Aligned_cols=154 Identities=40% Similarity=0.655 Sum_probs=140.4
Q ss_pred eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccC------
Q 021445 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYG------ 88 (312)
Q Consensus 15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~------ 88 (312)
|+.|+|+||||.+.||++|+||++||+++ ||+|+.||||+|+++|||||+. +++.++.++++
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~-----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~ 71 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ 71 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHhcC-----------CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence 45899999999999999999999999987 8999999999999999999986 56667666654
Q ss_pred -CCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCC-CCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccce
Q 021445 89 -LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTR-TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV 165 (312)
Q Consensus 89 -~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~-~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i 165 (312)
..+.+|.. .++|+.+|+|+|++.++++++|||||++++ .++||++|+|||||++||++|++|+.++++.+++|..+|
T Consensus 72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i 151 (166)
T cd01921 72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI 151 (166)
T ss_pred CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence 34666654 688999999999999999999999999985 799999999999999999999999999998889999999
Q ss_pred EEeeeeeeCCCCCCC
Q 021445 166 TITDCGEIPEGADDG 180 (312)
Q Consensus 166 ~I~~~g~l~~~~~~~ 180 (312)
+|.+|+++.+||++|
T Consensus 152 ~I~~~~i~~~pf~~~ 166 (166)
T cd01921 152 RIKHTHILDDPFPDP 166 (166)
T ss_pred EEEEEEEECCCCCCC
Confidence 999999999999875
No 12
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-43 Score=282.56 Aligned_cols=146 Identities=52% Similarity=0.839 Sum_probs=131.6
Q ss_pred CeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCC
Q 021445 14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED 93 (312)
Q Consensus 14 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~ 93 (312)
.++.|+|+|+||++.||+||+||++||+.+ ||+|+.||||+|+|||||||+..++|.+++ +.+|++
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g-----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~ 70 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLVKEG-----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKD 70 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHHHcC-----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcc
Confidence 356899999999999999999999999977 999999999999999999999977688877 478999
Q ss_pred CcccccCCC--cceEEeecCC-CCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCC----CCcccceE
Q 021445 94 ENFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVT 166 (312)
Q Consensus 94 e~~~~~~~~--~G~l~~~~~~-~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~----~~P~~~i~ 166 (312)
|++...|.+ +|+||||+.+ |++++|||||++.+.++||++|+|||+|++|||+|++|++..+... ..|..+++
T Consensus 71 E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~ 150 (158)
T COG0652 71 ENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVK 150 (158)
T ss_pred cccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeE
Confidence 988877777 9999999999 9999999999999999999999999999999999999999877653 45667777
Q ss_pred Eeeeeee
Q 021445 167 ITDCGEI 173 (312)
Q Consensus 167 I~~~g~l 173 (312)
|.+..++
T Consensus 151 i~~~~~~ 157 (158)
T COG0652 151 ILSVKIV 157 (158)
T ss_pred Eeeeeee
Confidence 8776654
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1.2e-42 Score=282.47 Aligned_cols=149 Identities=50% Similarity=0.841 Sum_probs=138.7
Q ss_pred EEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCc
Q 021445 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES 85 (312)
Q Consensus 6 v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (312)
|.|+++ .|+|+||||++.||++|+||++||+++ ||+|+.||||+|++++||||+. ++|.++.+
T Consensus 3 v~l~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~ 65 (153)
T cd01928 3 VTLHTN-----LGDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGES 65 (153)
T ss_pred EEEEEc-----cccEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCc
Confidence 455554 899999999999999999999999997 8999999999999999999986 56778888
Q ss_pred ccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccc
Q 021445 86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD 164 (312)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~ 164 (312)
+++.++++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++||++|++|++++++.+++|..+
T Consensus 66 ~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~ 145 (153)
T cd01928 66 IWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEE 145 (153)
T ss_pred cCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCC
Confidence 89999999976 67899999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eEEeeee
Q 021445 165 VTITDCG 171 (312)
Q Consensus 165 i~I~~~g 171 (312)
|+|.+|.
T Consensus 146 i~I~~~~ 152 (153)
T cd01928 146 IRIKDVT 152 (153)
T ss_pred eEEEEeE
Confidence 9999984
No 14
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.7e-42 Score=280.27 Aligned_cols=143 Identities=58% Similarity=0.889 Sum_probs=135.2
Q ss_pred eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (312)
Q Consensus 15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (312)
|+.|+|+||||.+.||++|+||++||+++ ||+|+.||||+|+++|||||+. ++|.++.++++..+++|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e 71 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHARNG-----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE 71 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence 45899999999999999999999999987 8999999999999999999986 67888888999999999
Q ss_pred cc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEee
Q 021445 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169 (312)
Q Consensus 95 ~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~ 169 (312)
.. .++|.++|+|+|++.++++++|||||++++.|+||++|+|||||++||++|++|+.++++.+++|..+|+|.+
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 76 7889999999999999999999999999999999999999999999999999999999988899999999986
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=9.2e-42 Score=275.23 Aligned_cols=142 Identities=57% Similarity=0.880 Sum_probs=132.9
Q ss_pred eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (312)
Q Consensus 15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (312)
|+.|+|+||||.+.||++|+||++||+.+ ||+++.||||+|+++|||||+. ++|.++.++++.+|++|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e 71 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKRG-----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE 71 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence 45899999999999999999999999987 8999999999999999999986 56777888899999998
Q ss_pred c-ccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEee
Q 021445 95 N-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169 (312)
Q Consensus 95 ~-~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~ 169 (312)
. ..++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++||+||++|+.++++ +++|..+|+|..
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 5 4789999999999999999999999999999999999999999999999999999999998 789999999863
No 16
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=7.4e-41 Score=277.01 Aligned_cols=160 Identities=39% Similarity=0.698 Sum_probs=147.0
Q ss_pred eEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCC
Q 021445 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE 84 (312)
Q Consensus 5 ~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~ 84 (312)
+|.|+++ .|+|+||||.+.||++|+||++||+.+ ||+|+.||||+|+++|||||+. ++|.++.
T Consensus 7 ~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~-----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~ 69 (171)
T cd01925 7 KVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT-GTGTGGE 69 (171)
T ss_pred EEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC-----------CCCCCEEEEEcCCcEEEccccC-CCCccCc
Confidence 4666665 899999999999999999999999987 8999999999999999999986 6788888
Q ss_pred cccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEe-ChHHHHHHhcccCCCCCCcc
Q 021445 85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI 162 (312)
Q Consensus 85 ~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~-G~~vl~~i~~~~~~~~~~P~ 162 (312)
++++.++++|.. .++|+++|+|+|++.++++++|||||++++.++||++|+|||+|++ +++++++|+.++++.+++|.
T Consensus 70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~ 149 (171)
T cd01925 70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPV 149 (171)
T ss_pred ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcC
Confidence 999999999866 5789999999999999999999999999999999999999999994 57889999999999889999
Q ss_pred cceEEeeeeeeCCCCCCCC
Q 021445 163 ADVTITDCGEIPEGADDGI 181 (312)
Q Consensus 163 ~~i~I~~~g~l~~~~~~~~ 181 (312)
.+|+|.+|+++.+||++-.
T Consensus 150 ~~i~I~~~~i~~~pf~~~~ 168 (171)
T cd01925 150 YPPKITSVEVLENPFDDIV 168 (171)
T ss_pred CCeEEEEEEEEcCCchhhc
Confidence 9999999999998887743
No 17
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-42 Score=299.61 Aligned_cols=158 Identities=44% Similarity=0.781 Sum_probs=148.8
Q ss_pred EEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcc
Q 021445 7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESI 86 (312)
Q Consensus 7 ~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~ 86 (312)
|..+. ++.|.|-|||+.|.+|++|+||+.||..+ ||+|+.|||.|.+||||||||+ +.|.|+.||
T Consensus 279 yvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~g-----------YYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSi 343 (518)
T KOG0883|consen 279 YVRLV---TNHGPLNLELHCDYAPRACENFITLCKNG-----------YYNNTIFHRSIRNFMIQGGDPT-GTGRGGESI 343 (518)
T ss_pred eEEEe---ccCCceeeEeecCcchHHHHHHHHHHhcc-----------cccchHHHHHHHHHeeeCCCCC-CCCCCCccc
Confidence 44444 45899999999999999999999999998 9999999999999999999987 899999999
Q ss_pred cCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccce
Q 021445 87 YGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV 165 (312)
Q Consensus 87 ~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i 165 (312)
+|.+|.||.. .+.|..||+||||++|||+|||||||+..+..+||++|++||+|+.|+++|.+|++++++++++|..+|
T Consensus 344 WgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I 423 (518)
T KOG0883|consen 344 WGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEI 423 (518)
T ss_pred cCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccce
Confidence 9999999975 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeeeCCCCCC
Q 021445 166 TITDCGEIPEGADD 179 (312)
Q Consensus 166 ~I~~~g~l~~~~~~ 179 (312)
+|.+..|..+|++.
T Consensus 424 ~i~~~~VFVdPfeE 437 (518)
T KOG0883|consen 424 KIEDAIVFVDPFEE 437 (518)
T ss_pred EEeeeEEeeCcHHH
Confidence 99999998666544
No 18
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.4e-39 Score=272.77 Aligned_cols=153 Identities=32% Similarity=0.520 Sum_probs=133.4
Q ss_pred CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (312)
Q Consensus 3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (312)
+++|.|+++ .|+|+||||.+.||++|+||++||+.+ ||+|+.||||+|+|+||||++....+
T Consensus 28 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~~~-- 89 (190)
T PRK10903 28 DPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQ-- 89 (190)
T ss_pred CcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEeCCceEEeCCcCCCCC--
Confidence 567777766 899999999999999999999999987 99999999999999999999764322
Q ss_pred CCcccCCCCCCCcccccCCCcceEEeecCC-CCCCCceEEEecCCCCCCCC-----CCceEEEEEeChHHHHHHhcccCC
Q 021445 83 GESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTG 156 (312)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~-~~~~~sqF~I~~~~~~~ld~-----~~~vfG~V~~G~~vl~~i~~~~~~ 156 (312)
...++.++.+|.....|+.+|+|+|++.+ +++++|||||++++.++||+ +|+|||+|++||+||++|+.++++
T Consensus 90 -~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~ 168 (190)
T PRK10903 90 -QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH 168 (190)
T ss_pred -CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCC
Confidence 12235677888655567789999999876 89999999999999999984 899999999999999999999997
Q ss_pred C----CCCcccceEEeeeeeeC
Q 021445 157 D----NDCPIADVTITDCGEIP 174 (312)
Q Consensus 157 ~----~~~P~~~i~I~~~g~l~ 174 (312)
. +++|..+|.|.+|++++
T Consensus 169 ~~~~~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 169 DVGPYQNVPSKPVVILSAKVLP 190 (190)
T ss_pred CCCCCCCcccCCeEEEEEEEeC
Confidence 6 47999999999999874
No 19
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-40 Score=245.24 Aligned_cols=151 Identities=48% Similarity=0.759 Sum_probs=143.8
Q ss_pred eeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCCc
Q 021445 16 LEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDEN 95 (312)
Q Consensus 16 ~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 95 (312)
..|+|.||||.+.+|++|+||+.||... ||++++|||-+|+|++|+||++ .+|.|+.+|+|.+|+||.
T Consensus 8 ~~gdikiev~~e~tpktce~~l~~~~~~-----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~ 75 (161)
T KOG0884|consen 8 DVGDIKIEVFCERTPKTCENFLALCASD-----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEY 75 (161)
T ss_pred ccCcEEEEEEecCChhHHHHHHHHhhhh-----------hccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHH
Confidence 3799999999999999999999999998 9999999999999999999987 689999999999999997
Q ss_pred c-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCC-CCcccceEEeeeeee
Q 021445 96 F-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGEI 173 (312)
Q Consensus 96 ~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~-~~P~~~i~I~~~g~l 173 (312)
. -++|+.||.|||++.||++++||||||.+..|+||-+|+|||+||+|++.|+.|+.+|+++. .+|..++.|.+..+-
T Consensus 76 ~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itih 155 (161)
T KOG0884|consen 76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 155 (161)
T ss_pred HHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEe
Confidence 6 69999999999999999999999999999999999999999999999999999999999886 899999999999988
Q ss_pred CCCCC
Q 021445 174 PEGAD 178 (312)
Q Consensus 174 ~~~~~ 178 (312)
..|+.
T Consensus 156 anp~a 160 (161)
T KOG0884|consen 156 ANPFA 160 (161)
T ss_pred cCcCC
Confidence 76664
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=2.5e-38 Score=259.51 Aligned_cols=145 Identities=34% Similarity=0.584 Sum_probs=124.2
Q ss_pred eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (312)
Q Consensus 15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (312)
|+.|+|+|+||.+.||++|+||++||+.+ ||+++.||||+|+|+||||++..+.+. ..++.++.+|
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e 71 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNE 71 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCc
Confidence 44899999999999999999999999987 999999999999999999997543322 2235567777
Q ss_pred cccccCCCcceEEeecCC-CCCCCceEEEecCCCCCCC-------C-CCceEEEEEeChHHHHHHhcccCCCC----CCc
Q 021445 95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLD-------G-KHVVFGRVIKGMGVVRSIEHVMTGDN----DCP 161 (312)
Q Consensus 95 ~~~~~~~~~G~l~~~~~~-~~~~~sqF~I~~~~~~~ld-------~-~~~vfG~V~~G~~vl~~i~~~~~~~~----~~P 161 (312)
.....|+.+|+|||++.+ |++++|||||++++.++|| + +|+|||+|++||++|++|+.++++.. ++|
T Consensus 72 ~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P 151 (164)
T PRK10791 72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVP 151 (164)
T ss_pred ccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCc
Confidence 544444579999999886 9999999999999988776 3 79999999999999999999999763 699
Q ss_pred ccceEEeeeeee
Q 021445 162 IADVTITDCGEI 173 (312)
Q Consensus 162 ~~~i~I~~~g~l 173 (312)
..+|+|.+|.+.
T Consensus 152 ~~~v~I~~~~i~ 163 (164)
T PRK10791 152 KEDVIIESVTVS 163 (164)
T ss_pred CCCeEEEEEEEe
Confidence 999999999764
No 21
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=290.43 Aligned_cols=147 Identities=55% Similarity=0.836 Sum_probs=141.2
Q ss_pred CeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCC
Q 021445 14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED 93 (312)
Q Consensus 14 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~ 93 (312)
.++.|+|.|.||++.||+||+||..-|+.+ ||+|..||||+++||||+|||. ++|+|+.||+|..|+|
T Consensus 410 htt~gdi~~kl~p~ecpktvenf~th~rng-----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfed 477 (558)
T KOG0882|consen 410 HTTQGDIHIKLYPEECPKTVENFTTHSRNG-----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFED 477 (558)
T ss_pred EecccceEEEecccccchhhhhhhccccCc-----------cccCcchHHhhhhheeecCCCC-CCCCCCcccccccchh
Confidence 456899999999999999999999999987 9999999999999999999997 8999999999999999
Q ss_pred Ccc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEeeeee
Q 021445 94 ENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172 (312)
Q Consensus 94 e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~~g~ 172 (312)
|.. .|+|+++.+||||+.|||+||||||||+.+.||||++|+|||||+.||+|+..|+++.++..++|.+++.|.+..+
T Consensus 478 efh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 478 EFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred hcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 987 7999999999999999999999999999999999999999999999999999999999999999999999998754
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.3e-37 Score=253.82 Aligned_cols=141 Identities=37% Similarity=0.530 Sum_probs=122.6
Q ss_pred eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (312)
Q Consensus 15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (312)
|+.|+|+|+||.+.||++|+||++||+.+ ||+|+.||||+|+++||||++....+. ..++.++.+|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e 69 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKG-----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNE 69 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCc
Confidence 45899999999999999999999999987 999999999999999999998643322 2235567777
Q ss_pred cccccCCCcceEEeecCC-CCCCCceEEEecCCCCCCCC-----CCceEEEEEeChHHHHHHhcccCCCC----CCcccc
Q 021445 95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIAD 164 (312)
Q Consensus 95 ~~~~~~~~~G~l~~~~~~-~~~~~sqF~I~~~~~~~ld~-----~~~vfG~V~~G~~vl~~i~~~~~~~~----~~P~~~ 164 (312)
.....|+++|+|+|++.+ +++++|||||++++.++||+ +|+|||+|++||+||++|+.++++.. +.|..+
T Consensus 70 ~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~ 149 (155)
T cd01920 70 AGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD 149 (155)
T ss_pred ccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCC
Confidence 655566789999999876 89999999999999999995 79999999999999999999999764 588888
Q ss_pred eEEee
Q 021445 165 VTITD 169 (312)
Q Consensus 165 i~I~~ 169 (312)
|.|.+
T Consensus 150 v~i~~ 154 (155)
T cd01920 150 VIIES 154 (155)
T ss_pred eEEEE
Confidence 88875
No 23
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=255.64 Aligned_cols=164 Identities=61% Similarity=1.034 Sum_probs=154.8
Q ss_pred CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEE---eecCCeEEeCCCCC
Q 021445 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR---VIKGFMIQGGDISA 77 (312)
Q Consensus 1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~r---v~~~~~iq~G~~~~ 77 (312)
|.+|.||||++++++++|+++++||.+..|+|++||..||++.++.+ |.++.||| .++++++||||.+.
T Consensus 1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~ 72 (167)
T KOG0865|consen 1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTC 72 (167)
T ss_pred CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCcccc
Confidence 78999999999999999999999999999999999999999877665 99999999 34479999999999
Q ss_pred CCCCCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCC
Q 021445 78 GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD 157 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~ 157 (312)
.+|+++.++|+++|+||++.++|..+|.|+|++.||++++|||||++....|||++|+|||+|.+||+++++|+.....+
T Consensus 73 hngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~ 152 (167)
T KOG0865|consen 73 HNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRN 152 (167)
T ss_pred cCCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999965544
Q ss_pred CCCcccceEEeeeeee
Q 021445 158 NDCPIADVTITDCGEI 173 (312)
Q Consensus 158 ~~~P~~~i~I~~~g~l 173 (312)
+++...|.|.+||.+
T Consensus 153 -gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 153 -GKTSKKITIADCGQL 167 (167)
T ss_pred -CcccccEEEecCCcC
Confidence 899999999999975
No 24
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=2.6e-36 Score=247.39 Aligned_cols=151 Identities=50% Similarity=0.839 Sum_probs=131.2
Q ss_pred EEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCC-Cc
Q 021445 7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG-ES 85 (312)
Q Consensus 7 ~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~-~~ 85 (312)
||+|+.++ .|+|+||||++.||++|+||++||+.+ +|+|+.|||++|+++||+|++....+.+. ..
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~ 67 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS 67 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccc
Confidence 78898765 999999999999999999999999987 89999999999999999999865433111 12
Q ss_pred ccCCCCCCCcc-cccCCCcceEEeecCC--CCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445 86 IYGLKFEDENF-ELKHERKGMLSMANAG--PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (312)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~G~l~~~~~~--~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~ 162 (312)
..+.++++|.. ...++++|+|+|++.+ +++++|||||+|++.+++|++|+|||+|++||++|++|+..+++. +|.
T Consensus 68 ~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~ 145 (155)
T PF00160_consen 68 TGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPK 145 (155)
T ss_dssp TTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBS
T ss_pred cCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccC
Confidence 23446788874 3344489999999986 889999999999999999999999999999999999999998877 999
Q ss_pred cceEEeeeee
Q 021445 163 ADVTITDCGE 172 (312)
Q Consensus 163 ~~i~I~~~g~ 172 (312)
++|+|.+|||
T Consensus 146 ~~v~I~~cgv 155 (155)
T PF00160_consen 146 QDVTISSCGV 155 (155)
T ss_dssp STEEEEEEEE
T ss_pred CCeEEEEeEC
Confidence 9999999997
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=2.4e-36 Score=245.14 Aligned_cols=142 Identities=62% Similarity=0.973 Sum_probs=128.4
Q ss_pred eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (312)
Q Consensus 15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (312)
++.|+|+|+||.+.||++|+||++||+++ +|+|+.|||++|+++||+|++..+.+.+ +.++..+++|
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E 70 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDE 70 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCc
Confidence 34799999999999999999999999998 8999999999999999999986543322 3557778888
Q ss_pred ccccc-CCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEee
Q 021445 95 NFELK-HERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169 (312)
Q Consensus 95 ~~~~~-~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~ 169 (312)
..... |+++|+|+|++.++++++|||||++++.++||++|+|||+|++||++|++|+..+++++++|..+|+|.+
T Consensus 71 ~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 71 NFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 87655 8899999999999999999999999999999999999999999999999999999998899999999963
No 26
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-36 Score=259.32 Aligned_cols=155 Identities=39% Similarity=0.645 Sum_probs=144.2
Q ss_pred eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCC----
Q 021445 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLK---- 90 (312)
Q Consensus 15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~---- 90 (312)
|++|+|||+||.+.+|.+|.||++||+-+ ||+.|.||.|..+|.+|.|||+ +.|.||.+||+..
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLCk~K-----------YYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q 74 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLCKIK-----------YYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQ 74 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHHhHh-----------hcccceeeeccccceeecCCCC-CCCCCcceeeeeccccc
Confidence 33899999999999999999999999998 9999999999999999999997 6999999998653
Q ss_pred ---CCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCC-CCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccce
Q 021445 91 ---FEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRT-SHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV 165 (312)
Q Consensus 91 ---~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~-~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i 165 (312)
|+.|.. .++|.+.|+|||++.|.+.+||||||||+.+ ..||++|+|||+|++|+++|.+|+..-++.+.+|.++|
T Consensus 75 ~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdI 154 (479)
T KOG0415|consen 75 ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDI 154 (479)
T ss_pred chhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccce
Confidence 555654 7999999999999999999999999999975 69999999999999999999999999999999999999
Q ss_pred EEeeeeeeCCCCCCCC
Q 021445 166 TITDCGEIPEGADDGI 181 (312)
Q Consensus 166 ~I~~~g~l~~~~~~~~ 181 (312)
+|++.-+|.+||++|.
T Consensus 155 RI~HTiiLdDPFddpp 170 (479)
T KOG0415|consen 155 RIKHTIILDDPFDDPP 170 (479)
T ss_pred eeeeeEEecCCCCCch
Confidence 9999999999999864
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-36 Score=263.99 Aligned_cols=162 Identities=38% Similarity=0.667 Sum_probs=150.2
Q ss_pred eEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCC
Q 021445 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE 84 (312)
Q Consensus 5 ~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~ 84 (312)
.|.+.++ .|+|.||||...||++|.||++||..+ ||+|+.|||++|+|++|||||. ++|+|+.
T Consensus 14 kvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg-----------yy~nt~fhrlvp~f~~Qggdp~-~~gtGge 76 (439)
T KOG0885|consen 14 KVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG-----------YYDNTEFHRLVPGFLVQGGDPT-GTGTGGE 76 (439)
T ss_pred eEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc-----------cccCceeeeeccchhcccCCCC-CCCCCcc
Confidence 3445544 799999999999999999999999998 9999999999999999999986 7899999
Q ss_pred cccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEe-ChHHHHHHhcccCCCCCCcc
Q 021445 85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI 162 (312)
Q Consensus 85 ~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~-G~~vl~~i~~~~~~~~~~P~ 162 (312)
+|||.+|.+|.. .++++++|+|+|++.+.+.||||||+||++.|++++++++||+|+. -+-.+.+|..+.++.+.+|.
T Consensus 77 siyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~ 156 (439)
T KOG0885|consen 77 SIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPV 156 (439)
T ss_pred ccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCC
Confidence 999999999976 7999999999999999999999999999999999999999999995 57778899999999999999
Q ss_pred cceEEeeeeeeCCCCCCCCCc
Q 021445 163 ADVTITDCGEIPEGADDGISN 183 (312)
Q Consensus 163 ~~i~I~~~g~l~~~~~~~~~~ 183 (312)
.+-.|.+|.|+-.||+|..+.
T Consensus 157 ~p~kI~s~EV~~npFdDI~pr 177 (439)
T KOG0885|consen 157 DPPKIKSVEVLINPFDDIKPR 177 (439)
T ss_pred CccceeeeEeecCchhhcchh
Confidence 999999999999999986554
No 28
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=3.5e-35 Score=243.47 Aligned_cols=129 Identities=35% Similarity=0.572 Sum_probs=109.8
Q ss_pred CeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCC-C------------
Q 021445 14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGD-G------------ 80 (312)
Q Consensus 14 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~-~------------ 80 (312)
.|+.|+|+|+||++.||++|.||++||+.+ ||+++.||||+|+|+|||||+.... +
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~ 71 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERG-----------FYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTI 71 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhC-----------CcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccc
Confidence 356899999999999999999999999987 9999999999999999999986431 0
Q ss_pred -------CCCCcccCCCCC-----CCcccccCCCcceEEeecCC--CCCCCceEEEecC-------CCCCCCCCCceEEE
Q 021445 81 -------TGGESIYGLKFE-----DENFELKHERKGMLSMANAG--PNTNGSQFFITTT-------RTSHLDGKHVVFGR 139 (312)
Q Consensus 81 -------~~~~~~~~~~~~-----~e~~~~~~~~~G~l~~~~~~--~~~~~sqF~I~~~-------~~~~ld~~~~vfG~ 139 (312)
..+.++++..+. +++..+.|+.+|+|+|++.+ +++++|||||+++ +.++||++|+|||+
T Consensus 72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~ 151 (176)
T cd01924 72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY 151 (176)
T ss_pred cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence 112234554432 44556788899999999988 6999999999998 78999999999999
Q ss_pred EEeChHHHHHHhcc
Q 021445 140 VIKGMGVVRSIEHV 153 (312)
Q Consensus 140 V~~G~~vl~~i~~~ 153 (312)
|++||+||++|+..
T Consensus 152 VveG~dvl~~I~~g 165 (176)
T cd01924 152 VTDGLDILRELKVG 165 (176)
T ss_pred EecCHHHHHhhcCC
Confidence 99999999999753
No 29
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.2e-20 Score=164.55 Aligned_cols=105 Identities=30% Similarity=0.417 Sum_probs=96.7
Q ss_pred ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHH
Q 021445 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (312)
Q Consensus 204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A 283 (312)
..+++++.|...|++||.+||+|+|..|+..|.+|+.+|++. ...++++.......+..+|+|+|+||+||++|.+|
T Consensus 200 ~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~---~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 200 FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYR---RSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcc---ccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Confidence 344689999999999999999999999999999999999884 45556777888999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 284 LLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 284 i~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
++.|++||.++|+|+|||||||+||+.+
T Consensus 277 i~~c~kvLe~~~~N~KALyRrG~A~l~~ 304 (397)
T KOG0543|consen 277 IESCNKVLELDPNNVKALYRRGQALLAL 304 (397)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhh
Confidence 9999999999999999999999999875
No 30
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.6e-18 Score=146.12 Aligned_cols=108 Identities=29% Similarity=0.259 Sum_probs=102.7
Q ss_pred CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHH
Q 021445 203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG 282 (312)
Q Consensus 203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~ 282 (312)
.+.++.++.+..+.++||.+|+.|+|.+|+.+|..||-+++.....+.+.+.++.+++.....+++|.|+|+++.++|-+
T Consensus 169 lsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ye 248 (329)
T KOG0545|consen 169 LSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYE 248 (329)
T ss_pred CCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 283 ALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 283 Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
++++|+.+|..+|.|+|||||||+|+.+
T Consensus 249 vleh~seiL~~~~~nvKA~frRakAhaa 276 (329)
T KOG0545|consen 249 VLEHCSEILRHHPGNVKAYFRRAKAHAA 276 (329)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999865
No 31
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2.7e-18 Score=140.83 Aligned_cols=96 Identities=28% Similarity=0.301 Sum_probs=86.9
Q ss_pred ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHH
Q 021445 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (312)
Q Consensus 204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A 283 (312)
..+..+..+..+|.+||.+|+.|+|.+|...|+.||+++... .....+.+|+|||+|++||+.|+.|
T Consensus 87 ek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-------------~~e~rsIly~Nraaa~iKl~k~e~a 153 (271)
T KOG4234|consen 87 EKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-------------STEERSILYSNRAAALIKLRKWESA 153 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-------------cHHHHHHHHhhhHHHHHHhhhHHHH
Confidence 344456788999999999999999999999999999987654 4477889999999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445 284 LLDTEFAMRDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 284 i~~~~~al~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
|++|++||+|+|++.||+.|||.+|..++
T Consensus 154 I~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 154 IEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 99999999999999999999999998763
No 32
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=3.5e-18 Score=148.48 Aligned_cols=87 Identities=31% Similarity=0.348 Sum_probs=83.7
Q ss_pred hhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHH
Q 021445 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (312)
Q Consensus 207 ~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~ 286 (312)
+....|+.||.+||.+++.++|++|+.+|++||+ +.|..++.|+|||++|.+||+|+.|++|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~------------------l~P~nAVyycNRAAAy~~Lg~~~~AVkD 137 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE------------------LDPTNAVYYCNRAAAYSKLGEYEDAVKD 137 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------cCCCcchHHHHHHHHHHHhcchHHHHHH
Confidence 5677899999999999999999999999999999 7888999999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 287 TEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 287 ~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
|..||.+||.+.|||-|.|.||+.+
T Consensus 138 ce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 138 CESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999875
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5e-18 Score=155.19 Aligned_cols=92 Identities=24% Similarity=0.370 Sum_probs=84.2
Q ss_pred CCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (312)
Q Consensus 202 ~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~ 281 (312)
....+++++.|..+|.+||.+|++|+|++||.+|++||+++ |..+..|.|||+||..+|+|+
T Consensus 105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~------------------p~epiFYsNraAcY~~lgd~~ 166 (606)
T KOG0547|consen 105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC------------------PDEPIFYSNRAACYESLGDWE 166 (606)
T ss_pred ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC------------------CCCchhhhhHHHHHHHHhhHH
Confidence 34556778899999999999999999999999999999953 334779999999999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 282 GALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 282 ~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+.+++|++||+++|.++|||+|||.||..|
T Consensus 167 ~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 167 KVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999876
No 34
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7e-16 Score=135.36 Aligned_cols=88 Identities=27% Similarity=0.394 Sum_probs=80.2
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.|+.+|++||.+|+.++|..|+.+|+++|.. .. .-..+.+.+|.|||+|.+.+|+|..||.||.+|
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~-------kc-------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKK-------KC-------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh-------cC-------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999983 11 124567889999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhhhC
Q 021445 291 MRDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
|.++|++.|||||-|+|++.|+
T Consensus 146 l~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 146 LKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred HhcCcchhhhhhhhhHHHHHHH
Confidence 9999999999999999999874
No 35
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.7e-15 Score=140.29 Aligned_cols=83 Identities=29% Similarity=0.508 Sum_probs=78.9
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.++..|++||.+|+.|+|..|+..|++||. .+|....+|+|||+||++|+++..|+.||+.+
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIK------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHh------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 466679999999999999999999999999 67889999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhhh
Q 021445 291 MRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~L 311 (312)
++++|++.|+|+|+|.|+..|
T Consensus 419 ieL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 419 IELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HhcCchHHHHHHHHHHHHHHH
Confidence 999999999999999999876
No 36
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.54 E-value=3e-15 Score=132.01 Aligned_cols=91 Identities=24% Similarity=0.174 Sum_probs=83.9
Q ss_pred ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHH
Q 021445 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (312)
Q Consensus 204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A 283 (312)
-.++.+..+..+|++||.+|++|+|++||.||+++|. +.|.....|.|||.+|+++++|..|
T Consensus 89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia------------------~~P~NpV~~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA------------------VYPHNPVYHINRALAYLKQKSFAQA 150 (536)
T ss_pred HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc------------------cCCCCccchhhHHHHHHHHHHHHHH
Confidence 3456677888899999999999999999999999999 6677788999999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445 284 LLDTEFAMRDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 284 i~~~~~al~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
..||+.|+.||..+.|||.|||.|...|+
T Consensus 151 E~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 151 EEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987763
No 37
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.6e-14 Score=126.16 Aligned_cols=96 Identities=26% Similarity=0.430 Sum_probs=83.3
Q ss_pred CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHH
Q 021445 203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG 282 (312)
Q Consensus 203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~ 282 (312)
.......+..+.++++||.+|++|+|..|.++|+.||.+ +++ -....+.+|.|||.++.++|+..+
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i----------dP~----n~~~naklY~nra~v~~rLgrl~e 305 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI----------DPS----NKKTNAKLYGNRALVNIRLGRLRE 305 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC----------Ccc----ccchhHHHHHHhHhhhcccCCchh
Confidence 334445567788999999999999999999999999983 111 234568899999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445 283 ALLDTEFAMRDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 283 Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
||.+|+.|+.|||...|||.|||+||+.|+
T Consensus 306 aisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 306 AISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 38
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.5e-13 Score=126.06 Aligned_cols=82 Identities=28% Similarity=0.365 Sum_probs=78.1
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..++++||.+|..|+|+.|+.+|+.||. +.|..+.+|+||++||.++++|++|++|+.+..
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~ 63 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTR 63 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence 45689999999999999999999999999 677789999999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHhhhh
Q 021445 292 RDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~L 311 (312)
+++|.|+|+|.|+|.|+..|
T Consensus 64 ~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 64 RLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred hcCCchhhHHHHhHHHHHhc
Confidence 99999999999999999876
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.34 E-value=6e-12 Score=124.97 Aligned_cols=91 Identities=26% Similarity=0.341 Sum_probs=81.6
Q ss_pred CCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (312)
Q Consensus 202 ~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~ 281 (312)
..+.++....+..+++.||.+|+.|+|++|+..|++||.+ .|. ...|.|+|.||+++++|+
T Consensus 117 ~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~------------------~p~-~~~~~n~a~~~~~l~~~~ 177 (615)
T TIGR00990 117 NLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC------------------KPD-PVYYSNRAACHNALGDWE 177 (615)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCc-hHHHHHHHHHHHHhCCHH
Confidence 4455666778899999999999999999999999999983 232 457999999999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 282 GALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 282 ~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+|+++|++||+++|+++++|+++|.+|..+
T Consensus 178 ~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 178 KVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999876
No 40
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.1e-12 Score=110.78 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=78.9
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
..++.++++||.+|..++|..|+.+|.+||. ++|.-+..|.|||+||+|+++|+.+.++|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~------------------~nP~~~~Y~tnralchlk~~~~~~v~~dcrr 69 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAIC------------------INPTVASYYTNRALCHLKLKHWEPVEEDCRR 69 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHh------------------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHH
Confidence 4678899999999999999999999999999 7888899999999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHhhh
Q 021445 290 AMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 290 al~l~p~~~Ka~~rrg~a~~~ 310 (312)
||+++|+.+|++|-.|++++.
T Consensus 70 alql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 70 ALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHhcChHHHHHHHHHHHHHHh
Confidence 999999999999999998864
No 41
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.30 E-value=6.7e-12 Score=87.92 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=63.5
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-CHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEF 289 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~ 289 (312)
.+..+...|..++..++|++|+..|++||+ ++|....+|.|+|.||++++ ++.+|++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~------------------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE------------------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH------------------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 577899999999999999999999999999 67788889999999999999 79999999999
Q ss_pred HHHcCC
Q 021445 290 AMRDGD 295 (312)
Q Consensus 290 al~l~p 295 (312)
||+++|
T Consensus 64 al~l~P 69 (69)
T PF13414_consen 64 ALKLDP 69 (69)
T ss_dssp HHHHST
T ss_pred HHHcCc
Confidence 999998
No 42
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.27 E-value=9.4e-13 Score=121.30 Aligned_cols=85 Identities=27% Similarity=0.364 Sum_probs=80.6
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
..+..+++++|.+|+.++|+.|+..|+|||+ ++|..+..+.|||++++|.++|..|+.||++
T Consensus 2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~------------------ldpnca~~~anRa~a~lK~e~~~~Al~Da~k 63 (476)
T KOG0376|consen 2 SSAEELKNEANEALKDKVFDVAVDLYSKAIE------------------LDPNCAIYFANRALAHLKVESFGGALHDALK 63 (476)
T ss_pred chhhhhhhHHhhhcccchHHHHHHHHHHHHh------------------cCCcceeeechhhhhheeechhhhHHHHHHh
Confidence 3577899999999999999999999999999 7888899999999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHhhhhC
Q 021445 290 AMRDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 290 al~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
|++++|...|||+|||.|+++|.
T Consensus 64 aie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 64 AIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhcCchhhheeeeccHHHHhHH
Confidence 99999999999999999998763
No 43
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.20 E-value=5.1e-11 Score=110.35 Aligned_cols=82 Identities=21% Similarity=0.428 Sum_probs=76.6
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..++.+|+.+|..++|++|+..|++||+ +.|....+|.|||.||+++|+|++|+.++++||
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~------------------~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al 63 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAID------------------LDPNNAELYADRAQANIKLGNFTEAVADANKAI 63 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999 566677899999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHhhhh
Q 021445 292 RDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~L 311 (312)
+++|.++.+|+++|.+|+.+
T Consensus 64 ~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 64 ELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HhCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=1.2e-09 Score=88.12 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=42.9
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+...|..++..|+|++|+..|.+++. ++|....+|.++|.++.++|+|++|+..+.+++.++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM------------------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34456666666666666666666665 344444455555555555555555555555555555
Q ss_pred CCchHHHHHHHHHhhh
Q 021445 295 DDNVKALFRQGQVSII 310 (312)
Q Consensus 295 p~~~Ka~~rrg~a~~~ 310 (312)
|.++.+++++|.++..
T Consensus 89 p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 89 ASHPEPVYQTGVCLKM 104 (144)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 5555555555555543
No 45
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.99 E-value=2.6e-09 Score=85.95 Aligned_cols=83 Identities=8% Similarity=0.051 Sum_probs=78.3
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
..+.+...|..++..|+|++|...|+-... ++|.....|.|+|+|+..+|+|.+||..+.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455688999999999999999999999988 78889999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhhh
Q 021445 291 MRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~L 311 (312)
+.++|+++.+++..|.|++.+
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHc
Confidence 999999999999999999875
No 46
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.96 E-value=2.3e-09 Score=86.46 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=73.4
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
...|..+.+.|+|++|+..|.+|+. ++|.....+.|+|.|+.++|++++|+..+.+||+++|
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~------------------l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALM------------------LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4678889999999999999999999 6778899999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhh
Q 021445 296 DNVKALFRQGQVSIIL 311 (312)
Q Consensus 296 ~~~Ka~~rrg~a~~~L 311 (312)
+++.++..||.+...|
T Consensus 124 ~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 124 ADASWSEIRQNAQIMV 139 (144)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999998765
No 47
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.86 E-value=2.5e-10 Score=101.30 Aligned_cols=121 Identities=22% Similarity=0.317 Sum_probs=99.9
Q ss_pred CCcccceEEeeeeeeCCCCCCCCCccCCCCCCCCCCCCCCCCCCCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHH
Q 021445 159 DCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA 238 (312)
Q Consensus 159 ~~P~~~i~I~~~g~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~ka 238 (312)
..|..+..|..-|++....+.+.+ .+|. ..+.-++.++.+...|-++-+++..|.++.|++.|+.|
T Consensus 75 s~~~~~~~~d~egviepd~d~pq~----MGds----------~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~a 140 (377)
T KOG1308|consen 75 SSPESDLEIDGEGVIEPDTDAPQE----MGDS----------NAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSA 140 (377)
T ss_pred CCCCcchhccCCCccccCCCcchh----hchh----------hhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccc
Confidence 456666677777777433333322 2222 23344567888999999999999999999999999999
Q ss_pred HHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 239 LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 239 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
|. ++|-...+|.+|+.++++|+++..|+.||+.||+++|+.++.|-.|++|+..|
T Consensus 141 i~------------------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 141 IE------------------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred cc------------------cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 99 78889999999999999999999999999999999999999999999998765
No 48
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.7e-09 Score=95.91 Aligned_cols=91 Identities=26% Similarity=0.349 Sum_probs=82.9
Q ss_pred CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHH
Q 021445 203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG 282 (312)
Q Consensus 203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~ 282 (312)
....+....++..+++||.++++++|.+|+..|+.||+ +-|..+..|.|||+|++.+++|++
T Consensus 40 s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~------------------~~pd~a~yy~nRAa~~m~~~~~~~ 101 (486)
T KOG0550|consen 40 SFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAID------------------MCPDNASYYSNRAATLMMLGRFEE 101 (486)
T ss_pred cccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHH------------------hCccchhhhchhHHHHHHHHhHhh
Confidence 33445566889999999999999999999999999999 456668899999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 283 ALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 283 Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
|+-++.+.++++|...|++.|-++|+..+
T Consensus 102 a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 102 ALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred cccchhhheecCCCccccccchhhhhhhh
Confidence 99999999999999999999999999875
No 49
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.82 E-value=9.6e-09 Score=70.86 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=58.0
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~ 296 (312)
..|..+++.|+|++|+..|+++++ ..|....++..+|.|++++|++++|+..++++++++|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK------------------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC------------------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 578999999999999999999999 45778889999999999999999999999999999998
Q ss_pred ch
Q 021445 297 NV 298 (312)
Q Consensus 297 ~~ 298 (312)
++
T Consensus 64 ~p 65 (65)
T PF13432_consen 64 NP 65 (65)
T ss_dssp -H
T ss_pred CC
Confidence 75
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.71 E-value=6.3e-08 Score=76.68 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=72.1
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..+...|..+++.++|++|++.|++++. ..|....++.++|.|+++++++++|+..+++++
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAA------------------YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999988 455567789999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHhhhh
Q 021445 292 RDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~L 311 (312)
.++|.+...++.+|.+|..+
T Consensus 79 ~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred hcCCCChHHHHHHHHHHHHc
Confidence 99999999999999988754
No 51
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.69 E-value=3.8e-08 Score=68.35 Aligned_cols=67 Identities=24% Similarity=0.192 Sum_probs=59.3
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHH
Q 021445 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301 (312)
Q Consensus 222 ~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~ 301 (312)
++++|+|++|+..|++++. ..|....++.++|.||+++|++++|...+.+++..+|+++..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ------------------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH------------------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 5789999999999999999 6677788999999999999999999999999999999987776
Q ss_pred HHHHH
Q 021445 302 FRQGQ 306 (312)
Q Consensus 302 ~rrg~ 306 (312)
.-+|+
T Consensus 63 ~l~a~ 67 (68)
T PF14559_consen 63 QLLAQ 67 (68)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 52
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.69 E-value=8.2e-08 Score=67.66 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=63.9
Q ss_pred hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (312)
Q Consensus 219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~ 298 (312)
.+.++++++|++|+..+++++. +.|....++.++|.|+.++|+|.+|+++++++++..|++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE------------------LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH------------------hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 3567899999999999999999 6788899999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 021445 299 KALFRQGQ 306 (312)
Q Consensus 299 Ka~~rrg~ 306 (312)
.+..-+++
T Consensus 64 ~~~~~~a~ 71 (73)
T PF13371_consen 64 DARALRAM 71 (73)
T ss_pred HHHHHHHh
Confidence 88776654
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.69 E-value=6.6e-08 Score=87.46 Aligned_cols=83 Identities=12% Similarity=0.015 Sum_probs=75.0
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..+.++|..+.+.|++.+|+..|++|++ ++|....+|.++|.++..+|+|++|+..++++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALA------------------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 355688999999999999999999999999 56677889999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhhh
Q 021445 291 MRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~L 311 (312)
|+++|++..+|+.+|.+++.+
T Consensus 125 l~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 125 LELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHhCCCCHHHHHHHHHHHHHC
Confidence 999999999999999998653
No 54
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.64 E-value=2e-07 Score=66.62 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=60.9
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..+.+.|..++..|+|++|+..|++|+.+.... ..-.+....++.|+|.|+..+|++++|++.+.+|
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-----------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46678899999999999999999999999974332 1134566889999999999999999999999999
Q ss_pred HHc
Q 021445 291 MRD 293 (312)
Q Consensus 291 l~l 293 (312)
+++
T Consensus 73 l~i 75 (78)
T PF13424_consen 73 LDI 75 (78)
T ss_dssp HHH
T ss_pred Hhh
Confidence 986
No 55
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=7.3e-08 Score=89.95 Aligned_cols=90 Identities=22% Similarity=0.190 Sum_probs=81.9
Q ss_pred ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC---CH
Q 021445 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DL 280 (312)
Q Consensus 204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~ 280 (312)
.+-+..+.+++.+++||..|-.+.+..|+..|.+++. .-+....+|.|||++++|.+ +.
T Consensus 366 ~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q------------------~~~~~~~~l~nraa~lmkRkW~~d~ 427 (758)
T KOG1310|consen 366 RFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ------------------YVPDAIYLLENRAAALMKRKWRGDS 427 (758)
T ss_pred chhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh------------------hccchhHHHHhHHHHHHhhhccccH
Confidence 3667778899999999999999999999999999999 45667889999999999964 78
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 281 KGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 281 ~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
-.|+.||..||++||...||+||.+.|+..|
T Consensus 428 ~~AlrDch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 428 YLALRDCHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred HHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998765
No 56
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.60 E-value=3e-07 Score=71.17 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=76.6
Q ss_pred ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHH
Q 021445 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (312)
Q Consensus 204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A 283 (312)
.....++....+--+|..+-..|+...|++.|.+||. +-|....+|+|||+++--+++.++|
T Consensus 35 ~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~------------------l~P~raSayNNRAQa~RLq~~~e~A 96 (175)
T KOG4555|consen 35 PDTQAIKASRELELKAIALAEAGDLDGALELFGQALC------------------LAPERASAYNNRAQALRLQGDDEEA 96 (175)
T ss_pred CchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------------------hcccchHhhccHHHHHHHcCChHHH
Confidence 3445567778888899999999999999999999999 5677899999999999999999999
Q ss_pred HHHHHHHHHcCCCch----HHHHHHHHHhhh
Q 021445 284 LLDTEFAMRDGDDNV----KALFRQGQVSII 310 (312)
Q Consensus 284 i~~~~~al~l~p~~~----Ka~~rrg~a~~~ 310 (312)
++|.++||++..... .||..||..|..
T Consensus 97 LdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 97 LDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 999999999975544 478888877754
No 57
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.55 E-value=6.7e-07 Score=74.24 Aligned_cols=89 Identities=18% Similarity=0.059 Sum_probs=75.3
Q ss_pred hhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHH
Q 021445 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (312)
Q Consensus 208 ~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~ 287 (312)
....+..+...|..+...|+|++|+.+|.+++..-.. .+....++.|+|.++.++|+|++|+..+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---------------PNDRSYILYNMGIIYASNGEHDKALEYY 95 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---------------cchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3446667899999999999999999999999984211 0113568999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHhhhh
Q 021445 288 EFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 288 ~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
.+++.++|.+..+++.+|.+|..+
T Consensus 96 ~~al~~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 96 HQALELNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHc
Confidence 999999999999999999988653
No 58
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.53 E-value=3.7e-07 Score=84.70 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=75.3
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..+..+|..+++.|+|++|+..+.+||. +.|....+|.++|.+|+++|+|++|+.++++++
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~------------------l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIE------------------LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45578899999999999999999999999 667778899999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHhhhh
Q 021445 292 RDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~L 311 (312)
+++|++..+....+.|...|
T Consensus 98 ~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 98 SLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999886654
No 59
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.51 E-value=2.7e-07 Score=87.80 Aligned_cols=83 Identities=22% Similarity=0.191 Sum_probs=66.7
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.++.+.+.||.+...+++++|+..|.+|++ +.|..+.+++|+|..|-++|++++|+.++.+|
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~------------------v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALE------------------VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHh------------------hChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 355556667777777777777777777776 66788889999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhhh
Q 021445 291 MRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~L 311 (312)
|+++|+.+.||..+|..|-.+
T Consensus 415 lrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 415 LRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HhcCchHHHHHHhcchHHHHh
Confidence 999999999999988877544
No 60
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.47 E-value=3e-07 Score=66.84 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=59.5
Q ss_pred hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHH--HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHH
Q 021445 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (312)
Q Consensus 225 ~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~ 302 (312)
+++|+.|+..|.++++. .|. ....+.++|.||+++|+|++|+..+++ +..++.+....+
T Consensus 2 ~~~y~~Ai~~~~k~~~~------------------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL------------------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHH------------------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHH------------------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 58999999999999993 221 556788899999999999999999999 999999999999
Q ss_pred HHHHHhhhh
Q 021445 303 RQGQVSIIL 311 (312)
Q Consensus 303 rrg~a~~~L 311 (312)
-.|+|+..|
T Consensus 63 l~a~~~~~l 71 (84)
T PF12895_consen 63 LLARCLLKL 71 (84)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999876
No 61
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.46 E-value=9.1e-07 Score=63.45 Aligned_cols=80 Identities=35% Similarity=0.424 Sum_probs=69.7
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.+...|..++..|++++|+..+.++++. .+....++.++|.++..++++++|++.+++++.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL------------------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc------------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567889999999999999999999983 2233368899999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhhhh
Q 021445 294 GDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 294 ~p~~~Ka~~rrg~a~~~L 311 (312)
.|.+..+++..|.++..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 64 DPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred CCcchhHHHHHHHHHHHH
Confidence 999999999999887653
No 62
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.46 E-value=4.4e-07 Score=63.13 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=45.7
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+.+|.++|.+++++++|++|+.+++++|+++|+++.+|+++|.+|..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~ 50 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL 50 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999999999999999999875
No 63
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.44 E-value=1.4e-06 Score=71.86 Aligned_cols=85 Identities=19% Similarity=0.057 Sum_probs=73.4
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
..+..+...|..++..++|++|+..|.+|+..... ......+|.|+|.++.++|++++|+..+.+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36777889999999999999999999999984210 112345899999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHhh
Q 021445 290 AMRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 290 al~l~p~~~Ka~~rrg~a~~ 309 (312)
|+.++|.+..++..+|.++.
T Consensus 98 Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHH
Confidence 99999999999999888886
No 64
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=1.1e-06 Score=74.68 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=72.1
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHH-HHcCC--HHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK-LKLGD--LKGALLDT 287 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~-~kl~~--~~~Ai~~~ 287 (312)
.++.|...|..+...|+|++|+..|.+|++ +.|....++.++|.++ ...|+ +++|++.+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~------------------l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQ------------------LRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 355688999999999999999999999999 6677788999999885 67777 58999999
Q ss_pred HHHHHcCCCchHHHHHHHHHhhhh
Q 021445 288 EFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 288 ~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+++++++|++..+++.+|.++..+
T Consensus 134 ~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 134 DKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHc
Confidence 999999999999999999888754
No 65
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.39 E-value=1.9e-06 Score=66.06 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=69.4
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
++.+.+.|..+++.|+|++|+..|.+++..... .+....++.++|.+++++++|++|+..+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK---------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345778999999999999999999999983110 12234578899999999999999999999999
Q ss_pred HcCCCc---hHHHHHHHHHhhhh
Q 021445 292 RDGDDN---VKALFRQGQVSIIL 311 (312)
Q Consensus 292 ~l~p~~---~Ka~~rrg~a~~~L 311 (312)
..+|++ ..+++..|.++..+
T Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~ 89 (119)
T TIGR02795 67 KKYPKSPKAPDALLKLGMSLQEL 89 (119)
T ss_pred HHCCCCCcccHHHHHHHHHHHHh
Confidence 998875 57899999988765
No 66
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.37 E-value=1.8e-06 Score=68.45 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=72.6
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..+.++|..+++.|+|.+|+..++....-.. ..+.-..+.+.++-+|++.++|.+|+..+++-
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYP---------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 356689999999999999999998877766221 22444568889999999999999999999999
Q ss_pred HHcCCCchH---HHHHHHHHhhhh
Q 021445 291 MRDGDDNVK---ALFRQGQVSIIL 311 (312)
Q Consensus 291 l~l~p~~~K---a~~rrg~a~~~L 311 (312)
|+++|++++ |||++|.+++.+
T Consensus 74 irLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHhCCCCCCccHHHHHHHHHHHHH
Confidence 999999886 899999998764
No 67
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.33 E-value=1e-06 Score=52.34 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~ 297 (312)
.+|.|+|.||+.+++|++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 579999999999999999999999999999975
No 68
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.32 E-value=1.2e-06 Score=81.74 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=59.3
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHH---HHHhHHHHHHHHcCCHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS---QIFTNSSACKLKLGDLKGALLDT 287 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~N~a~~~~kl~~~~~Ai~~~ 287 (312)
.+..+.+.|..+++.|+|++|+..|++||+ ++|... .+|+|+|.||.++|++++|++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe------------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE------------------LNPNPDEAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 466789999999999999999999999999 455544 46999999999999999999999
Q ss_pred HHHHHcC
Q 021445 288 EFAMRDG 294 (312)
Q Consensus 288 ~~al~l~ 294 (312)
.+||++.
T Consensus 136 rrALels 142 (453)
T PLN03098 136 RTALRDY 142 (453)
T ss_pred HHHHHhc
Confidence 9999983
No 69
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.30 E-value=2.2e-06 Score=85.39 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=59.2
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc---------ccCCCCchh-------hhHHHHHHHHHHhHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW---------EKEGIDEGK-------SSSLRKTKSQIFTNSSACKLK 276 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~---------~~~~~~~~~-------~~~~~~~~~~~~~N~a~~~~k 276 (312)
..+...|..++..|++++|+..|+++|+.-.... .....+.++ ...++|....+|.++|.+++.
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3466778888899999999999999997311100 000000000 112234445566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 277 l~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
+|+|++|+.+++++++++|++..+++.+|.++..
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666654
No 70
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.29 E-value=2.2e-06 Score=81.82 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=39.8
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+....+.|-.+-++|++++|+.+|++||+ +.|..+.+|+|++.+|-.+|+-++|+.++++|+
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~Ykealr------------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALR------------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHh------------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 44445555555555555555555555555 444444444444444444444444444444444
Q ss_pred HcCCCchHHHHHHHHHh
Q 021445 292 RDGDDNVKALFRQGQVS 308 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~ 308 (312)
.++|..+.|+-..|.+|
T Consensus 450 ~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIY 466 (966)
T ss_pred hcCcHHHHHHhhHHHHh
Confidence 44444444444444433
No 71
>PRK15331 chaperone protein SicA; Provisional
Probab=98.28 E-value=2.1e-06 Score=69.64 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=74.1
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
..+.+...|-.+|.+|+|++|...|+-..- .++.....+..+|+|+..+++|++|+..+..|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------------------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------------------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999987665 45556668899999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhhh
Q 021445 291 MRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~L 311 (312)
..++++++...|+.|+||+.|
T Consensus 98 ~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 98 FTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHcccCCCCccchHHHHHHHh
Confidence 999999999999999999876
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=4.3e-06 Score=66.05 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=66.9
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
...+...|..+++.|+|.+|+..|.+++. +.|.....+.++|.|+..+|++++|+..+++++
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAA------------------LDPDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567889999999999999999999998 445567789999999999999999999999999
Q ss_pred HcCCCchHHH--HHHHHHh
Q 021445 292 RDGDDNVKAL--FRQGQVS 308 (312)
Q Consensus 292 ~l~p~~~Ka~--~rrg~a~ 308 (312)
+++|++.+.. .+++...
T Consensus 113 ~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 113 EICGENPEYSELKERAEAM 131 (135)
T ss_pred HhccccchHHHHHHHHHHH
Confidence 9999988744 4444433
No 73
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.26 E-value=3.5e-06 Score=73.24 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=73.3
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..+.+.|..+++.|+|++|+..|++++..... .+....++.++|.++++++++++|+..++++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---------------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5667899999999999999999999999983211 1334567899999999999999999999999
Q ss_pred HHcCCCchH---HHHHHHHHhhh
Q 021445 291 MRDGDDNVK---ALFRQGQVSII 310 (312)
Q Consensus 291 l~l~p~~~K---a~~rrg~a~~~ 310 (312)
++.+|++.. +++.+|.++..
T Consensus 97 l~~~p~~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 97 IRLHPNHPDADYAYYLRGLSNYN 119 (235)
T ss_pred HHHCcCCCchHHHHHHHHHHHHH
Confidence 999998887 79999999865
No 74
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.21 E-value=2.4e-06 Score=76.34 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=75.3
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+++..+.|++++.+++|..|+..|..|++ .+|....++..||.+|+.||+-+.|+.|.+++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------------------CCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 466778999999999999999999999999 78888889999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhh
Q 021445 291 MRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~ 310 (312)
|++.|+..-|...||..+++
T Consensus 99 lelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HhcCccHHHHHHHhchhhhh
Confidence 99999999999999988875
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.20 E-value=8.5e-06 Score=69.22 Aligned_cols=82 Identities=17% Similarity=0.076 Sum_probs=67.8
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..+...|..++..|+|++|+..|.++++ ..|....++.++|.++..+|++++|++.+.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 91 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE------------------HDPDDYLAYLALALYYQQLGELEKAEDSFRRA 91 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466677889999999999999999999988 33444567888888888888888888888888
Q ss_pred HHcCCCchHHHHHHHHHhhh
Q 021445 291 MRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~ 310 (312)
++++|.+..+++..|.++..
T Consensus 92 l~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 92 LTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HhhCCCCHHHHHHHHHHHHH
Confidence 88888888888888877654
No 76
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=8e-06 Score=71.89 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=69.5
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+-+++-++.+.|.|..|++.-..||. ++|..+.+|.-++.+|+-+|+|.+|++.+.+||++|
T Consensus 118 ycNRAAAy~~Lg~~~~AVkDce~Al~------------------iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 118 YCNRAAAYSKLGEYEDAVKDCESALS------------------IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHh------------------cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 46888899999999999999999999 899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhh
Q 021445 295 DDNVKALFRQGQVSII 310 (312)
Q Consensus 295 p~~~Ka~~rrg~a~~~ 310 (312)
|+|.-.+-.+..|-..
T Consensus 180 P~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 180 PDNESYKSNLKIAEQK 195 (304)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9998655555555443
No 77
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.18 E-value=7.7e-06 Score=71.77 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=71.4
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.++.+..+|..++++|+|++|+..|++.+..... .+....+.+++|.+|+++++|++|+..+++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF---------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4555889999999999999999999999984221 2344556789999999999999999999999
Q ss_pred HHcCCCch---HHHHHHHHHhhh
Q 021445 291 MRDGDDNV---KALFRQGQVSII 310 (312)
Q Consensus 291 l~l~p~~~---Ka~~rrg~a~~~ 310 (312)
+++.|++. .|+|.+|.++..
T Consensus 96 i~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 96 IRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHhCcCCCchHHHHHHHHHhhhh
Confidence 99999876 489999988643
No 78
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=98.18 E-value=1.1e-05 Score=73.94 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=84.1
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.....|-..|++++|..|+-.|..||+++....-..++.......+...-+-+--.++.||+++++++-|+.+..+.|.+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 34567889999999999999999999999876544444444444466666778889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhhhhC
Q 021445 294 GDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 294 ~p~~~Ka~~rrg~a~~~L~ 312 (312)
+|.+..-++|+|.++..|+
T Consensus 258 nP~~frnHLrqAavfR~Le 276 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLE 276 (569)
T ss_pred CcchhhHHHHHHHHHHHHH
Confidence 9999999999999988774
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.18 E-value=7e-06 Score=74.27 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=64.6
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..+...|..+...|+|++|+..|.+||+ ++|....++.|+|.+++.+|++++|++++++++
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLE------------------LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56678999999999999999999999999 677778899999999999999999999999999
Q ss_pred HcCCCch
Q 021445 292 RDGDDNV 298 (312)
Q Consensus 292 ~l~p~~~ 298 (312)
+++|+++
T Consensus 160 ~~~P~~~ 166 (296)
T PRK11189 160 QDDPNDP 166 (296)
T ss_pred HhCCCCH
Confidence 9999987
No 80
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.16 E-value=6.9e-06 Score=66.29 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=67.2
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+.-+...|-.+-..|+|++|+..|.+|+. +++.....+.|.|.|++++|+.+.|.+.+..|+
T Consensus 69 ~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~------------------L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 69 FDYWFRLGECCQAQKHWGEAIYAYGRAAQ------------------IKIDAPQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh------------------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34467888888899999999999999999 667778899999999999999999999999999
Q ss_pred HcCCC--chHHHHHHHHHhhh
Q 021445 292 RDGDD--NVKALFRQGQVSII 310 (312)
Q Consensus 292 ~l~p~--~~Ka~~rrg~a~~~ 310 (312)
.+-.. ....+..||++++.
T Consensus 131 ~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 131 RICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHhccChhHHHHHHHHHHHHH
Confidence 77522 33466667776654
No 81
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.11 E-value=1.9e-05 Score=67.38 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=69.3
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.++.+.+.|..++..|+|.+|+..|++.+..... .+.-..+.+.+|.+++++++|.+|+..+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567899999999999999999999999985322 2344557889999999999999999999999
Q ss_pred HHcCCCchH---HHHHHHHHhhhh
Q 021445 291 MRDGDDNVK---ALFRQGQVSIIL 311 (312)
Q Consensus 291 l~l~p~~~K---a~~rrg~a~~~L 311 (312)
++..|++.+ |+|.+|.+++.+
T Consensus 69 i~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 69 IKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHCCCCcchhhHHHHHHHHHHHh
Confidence 999998774 999999998754
No 82
>PRK12370 invasion protein regulator; Provisional
Probab=98.10 E-value=1e-05 Score=79.50 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=57.5
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
...|..+...|++++|+..|++|++ ++|....+|.++|.++..+|++++|+..++++++++|
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANL------------------LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4556667777888888888888887 5666777888888888888888888888888888888
Q ss_pred CchHHHHHHHHHhh
Q 021445 296 DNVKALFRQGQVSI 309 (312)
Q Consensus 296 ~~~Ka~~rrg~a~~ 309 (312)
.+..+++.++.+++
T Consensus 404 ~~~~~~~~~~~~~~ 417 (553)
T PRK12370 404 TRAAAGITKLWITY 417 (553)
T ss_pred CChhhHHHHHHHHH
Confidence 87776655554443
No 83
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=1.2e-05 Score=66.83 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=67.2
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
.--+-++|-.+.|.++|+.|+...+|||+ +.|.+..++..||.+|-++.+|++|++|+.+++
T Consensus 134 sIly~Nraaa~iKl~k~e~aI~dcsKaie------------------l~pty~kAl~RRAeayek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 134 SILYSNRAAALIKLRKWESAIEDCSKAIE------------------LNPTYEKALERRAEAYEKMEKYEEALEDYKKIL 195 (271)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHhhHh------------------cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33457899999999999999999999999 788889999999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHH
Q 021445 292 RDGDDNVKALFRQGQV 307 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a 307 (312)
++||.+..| |+|.+
T Consensus 196 E~dPs~~ea--r~~i~ 209 (271)
T KOG4234|consen 196 ESDPSRREA--REAIA 209 (271)
T ss_pred HhCcchHHH--HHHHH
Confidence 999988744 44443
No 84
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.09 E-value=1e-05 Score=80.96 Aligned_cols=81 Identities=7% Similarity=-0.077 Sum_probs=67.8
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..+...++.+++.+++++|+..+.+++. ..|.....++++|.|+.++|+|++|++.+++++
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~------------------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFS------------------GGSSSAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 44567788888888888888888888888 667778888889999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHhhh
Q 021445 292 RDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~ 310 (312)
..+|+++++|+.+|.++..
T Consensus 182 ~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 182 RQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred hcCCCcHHHHHHHHHHHHH
Confidence 8888888999988888864
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=3.3e-06 Score=79.88 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=72.5
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
--.|--++-.++|+.|+.||+.||. .+|....+|+.+++++..-.+..+||..+++||+|.|
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~------------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQ------------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHh------------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 3567788889999999999999999 7888899999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhh
Q 021445 296 DNVKALFRQGQVSIIL 311 (312)
Q Consensus 296 ~~~Ka~~rrg~a~~~L 311 (312)
.++.++|..|.+++.|
T Consensus 496 ~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNL 511 (579)
T ss_pred Ceeeeehhhhhhhhhh
Confidence 9999999999998764
No 86
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.06 E-value=1.2e-05 Score=83.31 Aligned_cols=80 Identities=16% Similarity=0.075 Sum_probs=61.5
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.+...|..+.+.|++++|+..|.+++. +.|....++.|+|.++..+|++++|+..+.+|+++
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~------------------l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALE------------------LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345556666677777777777777776 56666778888888888888888888888888888
Q ss_pred CCCchHHHHHHHHHhhhh
Q 021445 294 GDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 294 ~p~~~Ka~~rrg~a~~~L 311 (312)
+|+++.+++.+|.++..+
T Consensus 673 ~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRL 690 (987)
T ss_pred CCCCHHHHHHHHHHHHHC
Confidence 888888888888887654
No 87
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.00 E-value=1.5e-05 Score=46.98 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~ 297 (312)
.++.++|.+++++|+|++|+++++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 478899999999999999999999999999986
No 88
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.99 E-value=0.00021 Score=54.54 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=70.4
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH--
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM-- 291 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al-- 291 (312)
....+|...++.|-|++|...|++|++.-...|+.+. -.-.-....||.-+|.++.+||+|++++..++++|
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEa------FDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEA------FDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhh------cccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3457788888999999999999999998655544333 33667778899999999999999999999999999
Q ss_pred -----HcCCC----chHHHHHHHHHhhhh
Q 021445 292 -----RDGDD----NVKALFRQGQVSIIL 311 (312)
Q Consensus 292 -----~l~p~----~~Ka~~rrg~a~~~L 311 (312)
+++.+ |..+-+.||.|+..+
T Consensus 85 FNRRGEL~qdeGklWIaaVfsra~Al~~~ 113 (144)
T PF12968_consen 85 FNRRGELHQDEGKLWIAAVFSRAVALEGL 113 (144)
T ss_dssp HHHH--TTSTHHHHHHHHHHHHHHHHHHT
T ss_pred HhhccccccccchhHHHHHHHHHHHHHhc
Confidence 55544 666778899988654
No 89
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=2.3e-05 Score=49.42 Aligned_cols=42 Identities=17% Similarity=0.037 Sum_probs=39.6
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV 307 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a 307 (312)
++..+|.+|..+|++++|++.++++|+.+|+++.+|+..|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 678999999999999999999999999999999999998863
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.95 E-value=2.8e-05 Score=77.86 Aligned_cols=83 Identities=7% Similarity=0.006 Sum_probs=78.3
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.++.+...|......|+|++|...+..+++ +.|....+..|++.++.+++++++|+..|+++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 466688899999999999999999999999 78889999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhhh
Q 021445 291 MRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~L 311 (312)
|..+|+++.+++.+|.++.++
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999865
No 91
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.93 E-value=5.6e-05 Score=64.13 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=60.5
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+...|..++..|+|++|+..|.+++... ..+.....+.++|.++.++|++++|+..+.+++..+
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDP----------------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcc----------------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4455666677777777777777776521 012234567888999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhhh
Q 021445 295 DDNVKALFRQGQVSIIL 311 (312)
Q Consensus 295 p~~~Ka~~rrg~a~~~L 311 (312)
|.+..+++.+|.++..+
T Consensus 166 ~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 166 PQRPESLLELAELYYLR 182 (234)
T ss_pred cCChHHHHHHHHHHHHc
Confidence 99998998888887653
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.91 E-value=2.9e-05 Score=66.05 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=69.2
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
..+.+.+-|--|..+|+|++|...|.+|+.--. -+.-+..|-|++.|.+++|+++.|.+++.++
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~----------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPA----------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCC----------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 345577888888888899999999988887321 2344668899999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhh
Q 021445 291 MRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~ 310 (312)
|++||++.-+...+++-++.
T Consensus 166 L~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 166 LELDPQFPPALLELARLHYK 185 (250)
T ss_pred HHhCcCCChHHHHHHHHHHh
Confidence 99999999888888776653
No 93
>PLN02789 farnesyltranstransferase
Probab=97.90 E-value=3.7e-05 Score=70.16 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=56.5
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-CHHHHHHHHHHHHHcCCCchHH
Q 021445 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKA 300 (312)
Q Consensus 222 ~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~l~p~~~Ka 300 (312)
+.+.+++++|+..+.++|+ ++|....++.+|+.++.+++ ++++++..++++++.+|++..+
T Consensus 47 l~~~e~serAL~lt~~aI~------------------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa 108 (320)
T PLN02789 47 YASDERSPRALDLTADVIR------------------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI 108 (320)
T ss_pred HHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence 3456789999999999998 67777778888888888877 5678888888888888888888
Q ss_pred HHHHHHHhhhh
Q 021445 301 LFRQGQVSIIL 311 (312)
Q Consensus 301 ~~rrg~a~~~L 311 (312)
|+.|+.++..|
T Consensus 109 W~~R~~~l~~l 119 (320)
T PLN02789 109 WHHRRWLAEKL 119 (320)
T ss_pred hHHHHHHHHHc
Confidence 88777666543
No 94
>PLN02789 farnesyltranstransferase
Probab=97.89 E-value=5.1e-05 Score=69.23 Aligned_cols=53 Identities=13% Similarity=0.021 Sum_probs=48.6
Q ss_pred HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+++....++.+|+.++.++++|++|+++|+++|++||.|..||+.|+.++..+
T Consensus 137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 56778889999999999999999999999999999999999999999887543
No 95
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=2.2e-05 Score=75.45 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=76.0
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.-.+|.-.|-.+.|+++|+.|.-.|++|++ ++|...++.+-.+..+.++|+.++|+..+++|
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 445678888889999999999999999998 88999999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhhh
Q 021445 291 MRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~L 311 (312)
+.+||.++-+-|.||..+..|
T Consensus 550 ~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 550 IHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HhcCCCCchhHHHHHHHHHhh
Confidence 999999999999999998765
No 96
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=3.6e-05 Score=71.40 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=71.9
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~ 296 (312)
--||-+--+++.++|+..|++||+ ++|....+|.-++.=|+.|++-..|++.+.+|++++|.
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALk------------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALK------------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHh------------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 457777788999999999999999 88999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhh
Q 021445 297 NVKALFRQGQVSIIL 311 (312)
Q Consensus 297 ~~Ka~~rrg~a~~~L 311 (312)
+.+|||-.|++|..|
T Consensus 397 DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIM 411 (559)
T ss_pred hHHHHhhhhHHHHHh
Confidence 999999999999765
No 97
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.85 E-value=1.5e-05 Score=78.21 Aligned_cols=96 Identities=22% Similarity=0.379 Sum_probs=85.2
Q ss_pred CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC--CH
Q 021445 203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DL 280 (312)
Q Consensus 203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~--~~ 280 (312)
.+....+..+..++++||.+|..++|.+|...|..++.++.. -......+++|++.|++.++ +|
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--------------~~~~~a~~~~~~~s~~m~~~l~~~ 109 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--------------DHHVVATLRSNQASCYMQLGLGEY 109 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccc--------------cchhhhhHHHHHHHHHhhcCccch
Confidence 466777889999999999999999999999999999986543 34567889999999999865 99
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445 281 KGALLDTEFAMRDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 281 ~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
.+++.+|+-|+...|...+++++|+.+|..++
T Consensus 110 ~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~ 141 (748)
T KOG4151|consen 110 PKAIPECELALESQPRISKALLKRARKYEALN 141 (748)
T ss_pred hhhcCchhhhhhccchHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999998763
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.82 E-value=5.3e-05 Score=65.52 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=72.1
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.++.+|..++++|+|.+|+..+++|.. +.|....+|+-++.+|.++|++++|-..+.+++++
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAAR------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhc------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 456699999999999999999999999 66777889999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhh
Q 021445 294 GDDNVKALFRQGQVSI 309 (312)
Q Consensus 294 ~p~~~Ka~~rrg~a~~ 309 (312)
.|+.++++-+.|..|+
T Consensus 164 ~~~~p~~~nNlgms~~ 179 (257)
T COG5010 164 APNEPSIANNLGMSLL 179 (257)
T ss_pred ccCCchhhhhHHHHHH
Confidence 9999999999888765
No 99
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.80 E-value=6.9e-05 Score=54.24 Aligned_cols=59 Identities=24% Similarity=0.341 Sum_probs=48.1
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
..+...|..+|+.|+|++|+..+++ ++ ..+....++.-+|.|++++++|++|++...+|
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~------------------~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LK------------------LDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HT------------------HHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hC------------------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 3456689999999999999999998 55 44545566667799999999999999998875
No 100
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=3.3e-05 Score=71.47 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=70.2
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..+-++||..|..|+|++|++.|.+||. -+.....++.|.++++-++++.++|++++-+.-
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~------------------ndasc~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALN------------------NDASCTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHc------------------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 44568999999999999999999999998 456677788899999999999999998888876
Q ss_pred HcCCCchHHHHHHHHHhhhhC
Q 021445 292 RDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
.+--+++..++..|..|..||
T Consensus 552 ~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhh
Confidence 666678888888888887664
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.80 E-value=7.5e-05 Score=63.47 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=61.6
Q ss_pred hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 021445 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (312)
Q Consensus 225 ~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rr 304 (312)
.++.++++..+.++|+ .+|.....|.++|.+|+.++++++|+..+.+|++++|+++.+++..
T Consensus 52 ~~~~~~~i~~l~~~L~------------------~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l 113 (198)
T PRK10370 52 QQTPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL 113 (198)
T ss_pred chhHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5677888888999988 6778888999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 021445 305 GQVSI 309 (312)
Q Consensus 305 g~a~~ 309 (312)
|.+++
T Consensus 114 A~aL~ 118 (198)
T PRK10370 114 ATVLY 118 (198)
T ss_pred HHHHH
Confidence 99863
No 102
>PRK12370 invasion protein regulator; Provisional
Probab=97.80 E-value=7.1e-05 Score=73.63 Aligned_cols=70 Identities=13% Similarity=-0.071 Sum_probs=63.5
Q ss_pred hhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHH
Q 021445 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (312)
Q Consensus 224 ~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~r 303 (312)
..+++++|+..+++|++ ++|....+|.++|.++..+|++++|+..+++|++++|+++.+|+.
T Consensus 316 ~~~~~~~A~~~~~~Al~------------------ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~ 377 (553)
T PRK12370 316 KQNAMIKAKEHAIKATE------------------LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYY 377 (553)
T ss_pred cchHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34568999999999999 677778899999999999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 021445 304 QGQVSIIL 311 (312)
Q Consensus 304 rg~a~~~L 311 (312)
+|.++..+
T Consensus 378 lg~~l~~~ 385 (553)
T PRK12370 378 YGWNLFMA 385 (553)
T ss_pred HHHHHHHC
Confidence 99998754
No 103
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.77 E-value=7.1e-05 Score=77.80 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=71.0
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..+.+.|..+...|++++|+..|.+|++ +.|....++.|+|.++.++|++++|+..+++|+
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~------------------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHK------------------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34467888999999999999999999999 677788899999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHhh
Q 021445 292 RDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~ 309 (312)
+++|+++...+..|..+.
T Consensus 705 ~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQ 722 (987)
T ss_pred hcCCCCchhhhhhhHHHH
Confidence 999999888776665543
No 104
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.76 E-value=3.7e-05 Score=71.87 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=49.5
Q ss_pred HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH---HHHHHHHhhhh
Q 021445 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA---LFRQGQVSIIL 311 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka---~~rrg~a~~~L 311 (312)
.+|.....++|+|.+|+++|+|++|+..|++||+++|++..+ ||.+|.||..|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L 125 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR 125 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc
Confidence 567888899999999999999999999999999999999965 99999999876
No 105
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.75 E-value=0.0001 Score=74.01 Aligned_cols=79 Identities=8% Similarity=0.015 Sum_probs=52.5
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.+...|..+++.|++++|+..|++++. +.|....++.+++.++.++|++++|+..+.+++..
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~------------------l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLA------------------THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345556666666677777766666666 34445556677777777777777777777777777
Q ss_pred CCCchHHHHHHHHHhhh
Q 021445 294 GDDNVKALFRQGQVSII 310 (312)
Q Consensus 294 ~p~~~Ka~~rrg~a~~~ 310 (312)
+|.+..+++++|.++..
T Consensus 348 ~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQ 364 (656)
T ss_pred CccchHHHHHHHHHHHH
Confidence 77776666666665543
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.73 E-value=2.6e-05 Score=69.91 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=68.8
Q ss_pred hhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHH
Q 021445 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (312)
Q Consensus 206 ~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~ 285 (312)
-..++.+.+..+.+.+...+++|.++++.+++.++. +++ ..+.....+--++.|+-+-+++.+||.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~----------ep~----~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN----------EPE----ETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc----------CCc----ccceeeeeeheeeecccccCCHHHHHH
Confidence 345667777888999999999999999999999982 111 122233344556778888888888888
Q ss_pred HHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 286 DTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 286 ~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
.|+++|.++|+++.+|..||.||+.
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhh
Confidence 8888888888888888888888864
No 107
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=2.1e-05 Score=75.70 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=61.7
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc-----c--cCCCCchh---------hhHHHHHHHHHHhHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----E--KEGIDEGK---------SSSLRKTKSQIFTNSSACK 274 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~-----~--~~~~~~~~---------~~~~~~~~~~~~~N~a~~~ 274 (312)
..+.|...||-+--+++++.|+.+|.+|+++=.... . .-...+|- ...+++....+|.-++.+|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 345689999999999999999999999998311000 0 00000000 0113444555666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
+|+++++.|.-++.+|++++|.|.-.+...|..+..
T Consensus 500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ 535 (638)
T ss_pred eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH
Confidence 666666666666666666666666666666655544
No 108
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.00013 Score=55.68 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=61.2
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
......|..+++.++|++|+..|.+++..... .+....++.+++.++.+++++++|+..++++++
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---------------SPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---------------CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34667899999999999999999999983211 112345789999999999999999999999999
Q ss_pred cCCCchHHH
Q 021445 293 DGDDNVKAL 301 (312)
Q Consensus 293 l~p~~~Ka~ 301 (312)
..|++..+.
T Consensus 105 ~~p~~~~~~ 113 (119)
T TIGR02795 105 RYPGSSAAK 113 (119)
T ss_pred HCcCChhHH
Confidence 999987643
No 109
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=5.4e-05 Score=70.68 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=80.2
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc----------cCCCCc------hhhhHHHHHHHHHHhHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------KEGIDE------GKSSSLRKTKSQIFTNSSACK 274 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~----------~~~~~~------~~~~~~~~~~~~~~~N~a~~~ 274 (312)
.+..+.-+|.-.|-.|++..|...+.++|.+-...+. ..+.++ .....++|..+.+|..||+.+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 4777888999999999999999999999975322111 111111 223457788889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+-+++|++|+.|+++++.|+|+++-+|..++.+++.+
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988764
No 110
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.70 E-value=0.00011 Score=68.61 Aligned_cols=76 Identities=18% Similarity=0.114 Sum_probs=65.8
Q ss_pred hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (312)
Q Consensus 218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~ 297 (312)
.+.-+++.+++.+|++.+++++. +.|....+..|+|.+++++|++++|+...+..+.-+|++
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~------------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALA------------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHh------------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 34445567778888888888887 667778899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhh
Q 021445 298 VKALFRQGQVSIIL 311 (312)
Q Consensus 298 ~Ka~~rrg~a~~~L 311 (312)
+..|...|+||..+
T Consensus 408 p~~w~~LAqay~~~ 421 (484)
T COG4783 408 PNGWDLLAQAYAEL 421 (484)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999999654
No 111
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.68 E-value=0.00044 Score=53.74 Aligned_cols=82 Identities=17% Similarity=0.075 Sum_probs=66.5
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.+.+.|..+-..|+.++|+..|++|+..- . ..+....++.++|.++..+|++++|+...++++.-
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--------L-------~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG--------L-------SGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46678888899999999999999999831 0 13445668999999999999999999999999998
Q ss_pred CCC---chHHHHHHHHHhhh
Q 021445 294 GDD---NVKALFRQGQVSII 310 (312)
Q Consensus 294 ~p~---~~Ka~~rrg~a~~~ 310 (312)
.|+ +.....-.+.++..
T Consensus 68 ~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 68 FPDDELNAALRVFLALALYN 87 (120)
T ss_pred CCCccccHHHHHHHHHHHHH
Confidence 777 66666666666654
No 112
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.67 E-value=0.00014 Score=72.90 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=60.5
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
...+...|......|++++|+..|++++. +.|....++.++|.++.++|++++|+..+++++
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~------------------~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al 137 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLA------------------VNVCQPEDVLLVASVLLKSKQYATVADLAEQAW 137 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456666677777788888888888777 555566677778888888888888888888888
Q ss_pred HcCCCchHHHHHHHHHhhh
Q 021445 292 RDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~ 310 (312)
+++|.+..++..+|.++..
T Consensus 138 ~l~P~~~~a~~~la~~l~~ 156 (656)
T PRK15174 138 LAFSGNSQIFALHLRTLVL 156 (656)
T ss_pred HhCCCcHHHHHHHHHHHHH
Confidence 8888888888777777654
No 113
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.66 E-value=0.00023 Score=46.71 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=35.3
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV 307 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a 307 (312)
++..+|.+++|+|+|.+|.+.|+.+|+++|+|..|.--+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 677899999999999999999999999999999887665544
No 114
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00017 Score=68.50 Aligned_cols=79 Identities=20% Similarity=0.149 Sum_probs=68.4
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
...+.+.|-.+.+.++|.+|+..|++||. +.|.....|...|.||..+|+++.|++++.+||
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~------------------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALL------------------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHH------------------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44577899999999999999999999999 667788899999999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHh
Q 021445 292 RDGDDNVKALFRQGQVS 308 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~ 308 (312)
-++|+|.-+---.+.|.
T Consensus 517 ~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 517 ALKPDNIFISELLKLAI 533 (611)
T ss_pred hcCCccHHHHHHHHHHH
Confidence 99999965444444443
No 115
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.64 E-value=0.00015 Score=77.42 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=67.9
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
...|..+++.|++++|+..|+++++ +.|....++.++|.++.++|++++|++.++++|+++|
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~------------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQ------------------VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4568889999999999999999999 4555667899999999999999999999999999999
Q ss_pred CchHHHHHHHHHhh
Q 021445 296 DNVKALFRQGQVSI 309 (312)
Q Consensus 296 ~~~Ka~~rrg~a~~ 309 (312)
.+..++...+.+|.
T Consensus 417 ~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 417 GNTNAVRGLANLYR 430 (1157)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888777653
No 116
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.0001 Score=50.35 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=41.2
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 268 ~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+++|..+++.|+|++|+..++++++.+|.+..+++.+|.++..+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~ 44 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ 44 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999999999764
No 117
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00017 Score=68.43 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=72.4
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+.+.|...|..+.|.+|+..|++++..+.... .+ .......++|+|.++-|+++|.+||..+.+||.+.
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~------~e-----~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVL------NE-----KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhcc------cc-----ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 68899999999999999999999997544320 00 11345679999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhhh
Q 021445 295 DDNVKALFRQGQVSIIL 311 (312)
Q Consensus 295 p~~~Ka~~rrg~a~~~L 311 (312)
|.++.++---|.+|..|
T Consensus 486 ~k~~~~~asig~iy~ll 502 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLL 502 (611)
T ss_pred CCchhHHHHHHHHHHHh
Confidence 99999999888888654
No 118
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.61 E-value=0.0002 Score=76.52 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=69.8
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.+..+|+.+...|++++|+..|+++++ +.|....++.++|.+|.++|++++|+..+++++++
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLA------------------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 456788999999999999999999999 55666778999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhh
Q 021445 294 GDDNVKALFRQGQVSI 309 (312)
Q Consensus 294 ~p~~~Ka~~rrg~a~~ 309 (312)
+|.++.++|.+|..+.
T Consensus 525 ~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 525 KPNDPEQVYAYGLYLS 540 (1157)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999998876543
No 119
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0002 Score=66.56 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=80.1
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc----------------cCCCCchhhhHHHHHHHHHHhHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------------KEGIDEGKSSSLRKTKSQIFTNSSACK 274 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~N~a~~~ 274 (312)
....|--.|-++..-++-..|++.|++|+++....-. -.-.--....++.|....++.-+|.||
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECY 442 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4566788999999999999999999999986422000 000001223346777888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
.|+++.++|+.++.+|+.....+..||++.|++|..|+
T Consensus 443 ~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998763
No 120
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=9.1e-05 Score=68.24 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=113.4
Q ss_pred eeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCC----cccC-CCC
Q 021445 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE----SIYG-LKF 91 (312)
Q Consensus 17 ~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~----~~~~-~~~ 91 (312)
..-|.|+|+.+-.|..++-|...|.-. |+++..|.+|...+++|.||.......++- +..+ ..|
T Consensus 111 ~s~IAVs~~~sg~i~VvD~~~d~~q~~-----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 111 ISLIAVSLFKSGKIFVVDGFGDFCQDG-----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred eeeEEeecccCCCcEEECCcCCcCccc-----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 348999999999999999999999987 899999999999999999986533322221 1111 012
Q ss_pred CC--CcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEee
Q 021445 92 ED--ENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169 (312)
Q Consensus 92 ~~--e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~ 169 (312)
++ .+..++|.. -+..+...-..-.+-+|+++....+.++.+..|+|+|..|-++++.|....++....|..++.|.+
T Consensus 180 Pr~~l~~~~K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~ 258 (558)
T KOG0882|consen 180 PRTNLNFELKHET-DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH 258 (558)
T ss_pred ccccccccccccc-hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence 22 234566643 444444443334467899998889999999999999999999999999999999999999999999
Q ss_pred eeeeCC
Q 021445 170 CGEIPE 175 (312)
Q Consensus 170 ~g~l~~ 175 (312)
....++
T Consensus 259 VelgRR 264 (558)
T KOG0882|consen 259 VELGRR 264 (558)
T ss_pred eehhhh
Confidence 887764
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.60 E-value=0.00011 Score=71.65 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=71.5
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
.+..|+-.+++++|++|.++++.+++ ++|+....|.+++.|.+++++++.|.+++.+++.++
T Consensus 488 ~r~~~~~~~~~~~fs~~~~hle~sl~------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 488 QRSLALLILSNKDFSEADKHLERSLE------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHhhccccccchhHHHHHHHHHHHhh------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 34556666778999999999999998 889999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhhh
Q 021445 295 DDNVKALFRQGQVSIIL 311 (312)
Q Consensus 295 p~~~Ka~~rrg~a~~~L 311 (312)
|++..||-+.+.||..+
T Consensus 550 Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRL 566 (777)
T ss_pred CCchhhhhhhhHHHHHH
Confidence 99999999999999765
No 122
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.56 E-value=0.00038 Score=61.72 Aligned_cols=84 Identities=8% Similarity=-0.021 Sum_probs=66.5
Q ss_pred hhhHhhhhhH-HhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEH-YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 213 ~~~k~~Gn~~-~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
....+.+-.+ ++.|+|++|+..|++.+..... .+....++.-+|.+|+.+++|++|+..+.+++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---------------s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---------------STYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456677776 6679999999999999984211 12224578899999999999999999999999
Q ss_pred HcCCC---chHHHHHHHHHhhhh
Q 021445 292 RDGDD---NVKALFRQGQVSIIL 311 (312)
Q Consensus 292 ~l~p~---~~Ka~~rrg~a~~~L 311 (312)
...|+ ...|+++.|.++..+
T Consensus 208 ~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 208 KNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HHCCCCcchhHHHHHHHHHHHHc
Confidence 88876 567899999988654
No 123
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.55 E-value=0.00025 Score=72.47 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=72.9
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..+...|+.++++|+|++|+..|.++++ ..|....++..+|.+++++|+|++|+..+.++
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 82 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQ------------------KDPNDAEARFLLGKIYLALGDYAAAEKELRKA 82 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345678899999999999999999999999 55667779999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhh
Q 021445 291 MRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~ 310 (312)
++..|....+++..|.++..
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (899)
T TIGR02917 83 LSLGYPKNQVLPLLARAYLL 102 (899)
T ss_pred HHcCCChhhhHHHHHHHHHH
Confidence 99999988888888887764
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.00042 Score=57.33 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=59.8
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC------------
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD------------ 279 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~------------ 279 (312)
+..+...|..+++.|+|++|+..|.+|+. +.|.....+.+++.++..+++
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~ 133 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALE------------------LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE 133 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH
Confidence 34678899999999999999999999999 445567788899999999887
Q ss_pred --HHHHHHHHHHHHHcCCCch
Q 021445 280 --LKGALLDTEFAMRDGDDNV 298 (312)
Q Consensus 280 --~~~Ai~~~~~al~l~p~~~ 298 (312)
+++|++.+.+++.++|++.
T Consensus 134 ~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 134 ALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHHHHHHhhCchhH
Confidence 6889999999999999874
No 125
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.52 E-value=0.00048 Score=58.75 Aligned_cols=81 Identities=19% Similarity=0.069 Sum_probs=72.6
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
+.+....+.|-.++..|++..|..-.++||+ .+|....+|.-||..|.++|+.+.|-+.+.+
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~------------------~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALE------------------HDPSYYLAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 4677788999999999999999999999999 7888899999999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHh
Q 021445 290 AMRDGDDNVKALFRQGQVS 308 (312)
Q Consensus 290 al~l~p~~~Ka~~rrg~a~ 308 (312)
||.++|++...+-+-|.=+
T Consensus 95 Alsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 95 ALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHhcCCCccchhhhhhHHH
Confidence 9999999887776665433
No 126
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.50 E-value=0.00028 Score=70.24 Aligned_cols=85 Identities=19% Similarity=0.175 Sum_probs=73.1
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
..+.-+.+-+.++...|+|.+|+..|...+..-. -....+|.++|.||+.++.|++|++.+.+
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-----------------~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREG-----------------YQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-----------------ccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3556678999999999999999999999887211 11266899999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHhhhh
Q 021445 290 AMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 290 al~l~p~~~Ka~~rrg~a~~~L 311 (312)
||.++|.+..+..+.+..+..+
T Consensus 475 vl~~~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 475 VLILAPDNLDARITLASLYQQL 496 (895)
T ss_pred HHhcCCCchhhhhhHHHHHHhc
Confidence 9999999999999999888654
No 127
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.49 E-value=0.00031 Score=71.78 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=26.0
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~ 240 (312)
.+..+...|..+++.|+|++|+..|.++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 153 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALA 153 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455677889999999999999999999987
No 128
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.48 E-value=0.0018 Score=51.82 Aligned_cols=99 Identities=14% Similarity=0.024 Sum_probs=74.9
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccC----CCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE----GIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~ 288 (312)
+.+...|...-..++...++..|.+|+.+........ ..-......+......++..++..+...|++++|+..|.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3445567777788899999999999999876643322 222233455778888899999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHhhhh
Q 021445 289 FAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 289 ~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+++.++|.+..+|...-++|..+
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~ 109 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQ 109 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHC
Confidence 99999999999999988888653
No 129
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.48 E-value=0.00013 Score=61.57 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=74.5
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
+|.-+.++|+-+=..|-+..|.-.|+++|. +.|....+++-++.-+..-|+|+.|.+.++.+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa------------------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~ 125 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 125 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhh------------------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence 566678888888888899999999999999 78888999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhh
Q 021445 291 MRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~ 309 (312)
+++||.+--|..+||.+++
T Consensus 126 ~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 126 LELDPTYNYAHLNRGIALY 144 (297)
T ss_pred hccCCcchHHHhccceeee
Confidence 9999999999999998865
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.47 E-value=0.0003 Score=49.91 Aligned_cols=66 Identities=27% Similarity=0.332 Sum_probs=56.5
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
..+...|..++..+++++|+..|++++.. .+....++.+++.++..++++++|+..+.++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALEL------------------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 34677899999999999999999999983 222336889999999999999999999999999
Q ss_pred cCCC
Q 021445 293 DGDD 296 (312)
Q Consensus 293 l~p~ 296 (312)
.+|.
T Consensus 97 ~~~~ 100 (100)
T cd00189 97 LDPN 100 (100)
T ss_pred cCCC
Confidence 8874
No 131
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.47 E-value=0.00021 Score=42.03 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~ 297 (312)
.+|.++|.+|.++|++++|++.+.++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999854
No 132
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.45 E-value=0.00047 Score=70.51 Aligned_cols=80 Identities=11% Similarity=-0.039 Sum_probs=71.2
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.....|..+...|++++|+..+++++. ..|....++.++|.++.++|++++|+..+++++.+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 345678888899999999999999998 45666779999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhhhh
Q 021445 294 GDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 294 ~p~~~Ka~~rrg~a~~~L 311 (312)
+|++..+++-+|.+++.+
T Consensus 423 ~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 423 EPRNINLEVEQAWTALDL 440 (765)
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 999999999999887654
No 133
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.44 E-value=0.00098 Score=62.14 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=55.6
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.+...+..+.+.|+|++|++.|.++++.-. .+ .......++.+++.++++++++++|+..+++++++
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGG-------DS------LRVEIAHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcC-------Cc------chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 345566677777777777777777765210 00 01122345677777777778888888888887777
Q ss_pred CCCchHHHHHHHHHhhh
Q 021445 294 GDDNVKALFRQGQVSII 310 (312)
Q Consensus 294 ~p~~~Ka~~rrg~a~~~ 310 (312)
+|.+..+++.+|.++..
T Consensus 210 ~p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 210 DPQCVRASILLGDLALA 226 (389)
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 77777777777777654
No 134
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.40 E-value=0.00055 Score=70.05 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=44.9
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.+...|..+.+.|++.+|+..|+++|+. .|....++.+++.++++++++++|+..+.++++.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSL------------------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3677888899999999999999999883 2222333344444444444444444444444444
Q ss_pred CCCchHHHHHHHHHh
Q 021445 294 GDDNVKALFRQGQVS 308 (312)
Q Consensus 294 ~p~~~Ka~~rrg~a~ 308 (312)
+|+++. ++.+|.++
T Consensus 113 ~P~~~~-~~~la~~l 126 (765)
T PRK10049 113 APDKAN-LLALAYVY 126 (765)
T ss_pred CCCCHH-HHHHHHHH
Confidence 444444 44444443
No 135
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.39 E-value=0.00044 Score=67.86 Aligned_cols=82 Identities=22% Similarity=0.067 Sum_probs=73.7
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHH--HHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL--DTEF 289 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~--~~~~ 289 (312)
+..+...|..+-.+|++.+|.+.|..|+. ++|....+..-+|.|+++.|+..-|.. ....
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~------------------ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA------------------LDPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 34468889999999999999999999999 778888899999999999999888888 9999
Q ss_pred HHHcCCCchHHHHHHHHHhhhh
Q 021445 290 AMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 290 al~l~p~~~Ka~~rrg~a~~~L 311 (312)
++++||.|.+|||..|..+..+
T Consensus 746 alr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 746 ALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred HHhhCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999988653
No 136
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00059 Score=62.68 Aligned_cols=67 Identities=22% Similarity=0.202 Sum_probs=59.3
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
.+.+-.+.|.++|.+|+..-+++|. +++....++.-|+.|++.+++|+.|+.++.+|++++|
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe------------------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLE------------------LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHh------------------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 4556666788899999999999999 6788899999999999999999999999999999999
Q ss_pred CchHH
Q 021445 296 DNVKA 300 (312)
Q Consensus 296 ~~~Ka 300 (312)
.|--+
T Consensus 323 ~Nka~ 327 (397)
T KOG0543|consen 323 SNKAA 327 (397)
T ss_pred CcHHH
Confidence 99543
No 137
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.38 E-value=8.7e-05 Score=44.04 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHH
Q 021445 234 KYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (312)
Q Consensus 234 ~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~ 285 (312)
+|+|||+ ++|....+|.|+|.+|...|++++|++
T Consensus 1 ~y~kAie------------------~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE------------------LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHH------------------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999 789999999999999999999999973
No 138
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.36 E-value=0.00073 Score=63.00 Aligned_cols=76 Identities=14% Similarity=0.058 Sum_probs=45.9
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+...|..+++.+++++|+..|.++++. .|....++.++|.++.++|++++|++.+.+++..+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAA------------------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhH------------------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 456777778888999999999888873 22223345555555555555555555555555555
Q ss_pred CCch-HHHHHHHHHh
Q 021445 295 DDNV-KALFRQGQVS 308 (312)
Q Consensus 295 p~~~-Ka~~rrg~a~ 308 (312)
|.+. .++...+.+|
T Consensus 245 p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 245 PEYLSEVLPKLMECY 259 (389)
T ss_pred hhhHHHHHHHHHHHH
Confidence 5442 3334444444
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.35 E-value=0.0013 Score=52.71 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=66.3
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
.......|..++..|+|++|+..|.+++..- .-..+...+.+++|.+++.+++|++|+..++. +
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---------------~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~ 111 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANA---------------PDPELKPLARLRLARILLQQGQYDEALATLQQ-I 111 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-c
Confidence 3445678999999999999999999999831 01244566889999999999999999999966 3
Q ss_pred HcCCCchHHHHHHHHHhhhh
Q 021445 292 RDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~L 311 (312)
.-.+-.+.++..+|.+|..+
T Consensus 112 ~~~~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 112 PDEAFKALAAELLGDIYLAQ 131 (145)
T ss_pred cCcchHHHHHHHHHHHHHHC
Confidence 44455667888888888754
No 140
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.29 E-value=0.0036 Score=54.22 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=65.0
Q ss_pred hHhhhhhHHhh--------hcHHHHHHHHHHHHHHhhhccccCCCCchhh------hHHHHHHHHHHhHHHHHHHHcCCH
Q 021445 215 IKVFGNEHYKK--------QDYKMALRKYRKALRYLDICWEKEGIDEGKS------SSLRKTKSQIFTNSSACKLKLGDL 280 (312)
Q Consensus 215 ~k~~Gn~~~~~--------~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~N~a~~~~kl~~~ 280 (312)
+...|..+++. +++++|+..|++++..-. .+.... ............++|.+|+++|++
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 182 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-------NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY 182 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 45566666654 889999999999997421 111110 111222233456899999999999
Q ss_pred HHHHHHHHHHHHcCCC---chHHHHHHHHHhhhh
Q 021445 281 KGALLDTEFAMRDGDD---NVKALFRQGQVSIIL 311 (312)
Q Consensus 281 ~~Ai~~~~~al~l~p~---~~Ka~~rrg~a~~~L 311 (312)
.+|+..+.+++...|+ .+++++++|.++..+
T Consensus 183 ~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 183 VAAINRFETVVENYPDTPATEEALARLVEAYLKL 216 (235)
T ss_pred HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence 9999999999999665 569999999999875
No 141
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.25 E-value=0.00076 Score=64.91 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=61.4
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..++.-|+.+...++|.+|+..|.+||..+... .....|.....+.|+|..|.+.|+|.+|..+|++|+
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~----------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEV----------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh----------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 4445678999999999999999999999976542 112457788899999999999999999999999999
Q ss_pred HcC
Q 021445 292 RDG 294 (312)
Q Consensus 292 ~l~ 294 (312)
++-
T Consensus 311 ~I~ 313 (508)
T KOG1840|consen 311 EIY 313 (508)
T ss_pred HHH
Confidence 653
No 142
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.24 E-value=0.0013 Score=57.17 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=70.7
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
-+..|.++|....+.|+|.+|+..|.+...- .+ ..|....+.+.++.+++|-++|++|+...++-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p--------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-------HP--------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CC--------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4667999999999999999999999888762 11 23444567788999999999999999999999
Q ss_pred HHcCCCchH---HHHHHHHHhhh
Q 021445 291 MRDGDDNVK---ALFRQGQVSII 310 (312)
Q Consensus 291 l~l~p~~~K---a~~rrg~a~~~ 310 (312)
+++.|++.. ++|-+|.++..
T Consensus 98 i~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 98 IRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHhCCCCCChhHHHHHHHHHHhc
Confidence 999998775 78888887653
No 143
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.23 E-value=0.0012 Score=54.36 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCc
Q 021445 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLDTEFAMRDGDDN 297 (312)
Q Consensus 228 y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~----------~~~Ai~~~~~al~l~p~~ 297 (312)
|+.|.+.|..+.. .+|.....+.|-+.+++.|-+ +++|+.-+++||.++|+.
T Consensus 7 FE~ark~aea~y~------------------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~ 68 (186)
T PF06552_consen 7 FEHARKKAEAAYA------------------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK 68 (186)
T ss_dssp HHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHH------------------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence 6778888888887 778888899999999988743 578899999999999999
Q ss_pred hHHHHHHHHHhhhh
Q 021445 298 VKALFRQGQVSIIL 311 (312)
Q Consensus 298 ~Ka~~rrg~a~~~L 311 (312)
..|++..|.||..+
T Consensus 69 hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 69 HDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999764
No 144
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.00019 Score=66.50 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=66.7
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
.+.||.+|++.+|.+|+..|+-||..+... -+...+.++.|.+.++.++|+|+.||..++.+.+..|
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsi-------------nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p 307 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSI-------------NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP 307 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhcccc-------------chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc
Confidence 478999999999999999999999865442 3567888999999999999999999999999999998
Q ss_pred CchHHHHHHHHHhh
Q 021445 296 DNVKALFRQGQVSI 309 (312)
Q Consensus 296 ~~~Ka~~rrg~a~~ 309 (312)
+. ++-+..-.|+.
T Consensus 308 n~-~a~~nl~i~~f 320 (840)
T KOG2003|consen 308 NF-IAALNLIICAF 320 (840)
T ss_pred cH-Hhhhhhhhhhe
Confidence 55 45455554443
No 145
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.18 E-value=0.00078 Score=47.74 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=41.7
Q ss_pred HHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCchHHHHHHHHHhhhh
Q 021445 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-------DDNVKALFRQGQVSIIL 311 (312)
Q Consensus 261 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~-------p~~~Ka~~rrg~a~~~L 311 (312)
|....+|.|+|.+|..+|+|++|+..+++|+++. |.-+.+++..|.++..+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~ 59 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999999999552 23467889999988765
No 146
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.17 E-value=0.0021 Score=57.97 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=62.9
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
..+++-++++.++|..|....+.||. ++..+..+|+.|+.+...||+..+|-+||+.||+|.
T Consensus 134 ~~NRA~AYlk~K~FA~AE~DC~~Aia------------------Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 134 HINRALAYLKQKSFAQAEEDCEAAIA------------------LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHH------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 56888999999999999999999999 889999999999999999999999999999999999
Q ss_pred CCchH
Q 021445 295 DDNVK 299 (312)
Q Consensus 295 p~~~K 299 (312)
|++..
T Consensus 196 P~~~E 200 (536)
T KOG4648|consen 196 PKNIE 200 (536)
T ss_pred cccHH
Confidence 98653
No 147
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.14 E-value=0.00079 Score=46.97 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=38.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 271 a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
...|++.++|++|++.+++++.++|.++.+|+.+|.++..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 42 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL 42 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh
Confidence 56789999999999999999999999999999999999865
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.13 E-value=0.0016 Score=53.57 Aligned_cols=76 Identities=17% Similarity=0.024 Sum_probs=51.3
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH---
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE--- 288 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~--- 288 (312)
+..+.+.|..+...|++++|+..|.+|+..-.. . .........+|.|++..+.++|++++|+.+++
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-------~----~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPF-------L----PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------c----HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 346788999999999999999999999983110 0 11122334455555555558999885555554
Q ss_pred ----HHHHcCCCch
Q 021445 289 ----FAMRDGDDNV 298 (312)
Q Consensus 289 ----~al~l~p~~~ 298 (312)
+++..+|.+.
T Consensus 141 ~~~~~a~~~~p~~~ 154 (168)
T CHL00033 141 EYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHhCcccH
Confidence 5667888655
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.11 E-value=0.0044 Score=55.61 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=63.7
Q ss_pred hhhhhHhhhhhHHhh-hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~-~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
.+..+.+.|..+-+. +++++|++.|++|++++... ........++.+.|.++.++++|++|++.+++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e------------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE------------GSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455567777777787 89999999999999987552 02344567899999999999999999999999
Q ss_pred HHHcCC------CchHHH-HHHHHHhhhh
Q 021445 290 AMRDGD------DNVKAL-FRQGQVSIIL 311 (312)
Q Consensus 290 al~l~p------~~~Ka~-~rrg~a~~~L 311 (312)
+....- .++|-+ ++.+.|++.+
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAM 209 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence 986421 145544 4556666543
No 150
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.0023 Score=61.09 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=72.5
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
..+|..++++|+.-+|+-.|+.|+. -+|..+.+|.-++.++...++-..||....++|++||
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk------------------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP 350 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK------------------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP 350 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh------------------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999 7888999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhh
Q 021445 296 DNVKALFRQGQVSI 309 (312)
Q Consensus 296 ~~~Ka~~rrg~a~~ 309 (312)
+|.+|+.-.|..|.
T Consensus 351 ~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 351 TNLEALMALAVSYT 364 (579)
T ss_pred ccHHHHHHHHHHHh
Confidence 99999999998885
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.05 E-value=0.0022 Score=60.03 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=62.4
Q ss_pred hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (312)
Q Consensus 219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~ 298 (312)
+..++..++-.+|++...++|. ..|....++.-.|..+++.++|+.|+..+.+|.++.|...
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~------------------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f 268 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALK------------------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF 268 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH
Confidence 3444445566778888888886 3344477888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhC
Q 021445 299 KALFRQGQVSIILL 312 (312)
Q Consensus 299 Ka~~rrg~a~~~L~ 312 (312)
++|+..|++|..+.
T Consensus 269 ~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 269 ETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998763
No 152
>PRK15331 chaperone protein SicA; Provisional
Probab=97.05 E-value=0.0019 Score=52.50 Aligned_cols=76 Identities=14% Similarity=0.087 Sum_probs=60.6
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+...|-.+-..++|++|+..|..|..+ .+.....+...|.||+.+++..+|..++..|+. .
T Consensus 74 ~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l------------------~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~ 134 (165)
T PRK15331 74 TMGLAAVCQLKKQFQKACDLYAVAFTL------------------LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-R 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc------------------ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-C
Confidence 566777777889999999999999873 333344578899999999999999999999999 4
Q ss_pred CCchHHHHHHHHHhhh
Q 021445 295 DDNVKALFRQGQVSII 310 (312)
Q Consensus 295 p~~~Ka~~rrg~a~~~ 310 (312)
|. -..+.+||++++.
T Consensus 135 ~~-~~~l~~~A~~~L~ 149 (165)
T PRK15331 135 TE-DESLRAKALVYLE 149 (165)
T ss_pred cc-hHHHHHHHHHHHH
Confidence 54 4467777887764
No 153
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.00 E-value=0.0014 Score=36.70 Aligned_cols=33 Identities=33% Similarity=0.301 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~ 297 (312)
.++.++|.|+..++++++|+..+.++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 368899999999999999999999999998863
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0033 Score=54.43 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=67.2
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC---CHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDT 287 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~~~Ai~~~ 287 (312)
..+.|.+.++-++..++|+.|+-||.+.+- +.|..+.++.-+|.+++-+| ++.-|.+++
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll------------------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLL------------------IQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456688889999999999999999999987 67788888888999888877 688899999
Q ss_pred HHHHHcCCCchHHHHHHHHH
Q 021445 288 EFAMRDGDDNVKALFRQGQV 307 (312)
Q Consensus 288 ~~al~l~p~~~Ka~~rrg~a 307 (312)
.++|+++|.+..+||---.|
T Consensus 215 ~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHhChHhHHHHHHHHHH
Confidence 99999999998888765443
No 155
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.95 E-value=0.0016 Score=58.16 Aligned_cols=99 Identities=20% Similarity=0.085 Sum_probs=70.3
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---------cCCCCchhh-------hHHHHHHHHHHhHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEGKS-------SSLRKTKSQIFTNSSACKLK 276 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---------~~~~~~~~~-------~~~~~~~~~~~~N~a~~~~k 276 (312)
.-+...|..+.+.|++++|++.|++||+.-...+. .+....++. ....+....++..+|.++++
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 34567888888999999999999999985432110 111111110 01123345678899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 277 l~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+|++++|+..+.++++.+|+++..+...|.++...
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA 261 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998653
No 156
>PRK00969 hypothetical protein; Provisional
Probab=96.92 E-value=0.0037 Score=59.05 Aligned_cols=101 Identities=28% Similarity=0.436 Sum_probs=68.1
Q ss_pred eEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEee--cCCeEEeCCCCCCCCCCCCcccCCCCCCCc
Q 021445 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVI--KGFMIQGGDISAGDGTGGESIYGLKFEDEN 95 (312)
Q Consensus 18 G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~--~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 95 (312)
=.+.++|.++ +|.++++|+.+.+.+. ++|- .+-+|. ..+.-|...+.|+
T Consensus 204 Ty~eve~~~~-~p~s~EH~la~~~~G~-----------------f~Vd~~tstfI~-----------d~~L~g~~~p~En 254 (508)
T PRK00969 204 TYVEVELDPG-APKSVEHFLALLEDGT-----------------FEVDFETSTFIA-----------DDRLQGLKIPEEN 254 (508)
T ss_pred EEEEEEEcCC-CCchHHHHHHHHhCCe-----------------EEEeeeecceEe-----------eccccCccCCccc
Confidence 4677888877 8999999999999872 2221 111111 1223345556666
Q ss_pred ccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhc
Q 021445 96 FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (312)
Q Consensus 96 ~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~ 152 (312)
..- -++|+|++.+.|.. ....||.-.+.+. .-.|+|+|+|+.||++++--..
T Consensus 255 ~~~--R~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 255 FEP--RRRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred cCc--cccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence 432 35799999998843 4578888776543 3458999999999999876544
No 157
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.92 E-value=0.0041 Score=58.58 Aligned_cols=101 Identities=26% Similarity=0.425 Sum_probs=67.8
Q ss_pred eEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEee--cCCeEEeCCCCCCCCCCCCcccCCCCCCCc
Q 021445 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVI--KGFMIQGGDISAGDGTGGESIYGLKFEDEN 95 (312)
Q Consensus 18 G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~--~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 95 (312)
=.+.+||.++ +|.++++|+.+.+.+. ++|- .+-+|. ..+.-|...+.|+
T Consensus 201 Ty~evE~~~~-~p~s~EH~la~~~~G~-----------------~~Vd~~tsTfi~-----------d~~L~g~~~p~En 251 (503)
T TIGR03268 201 TYVEVELDPN-APVSVEHFLALMEDGT-----------------FRVDYRTSTFIS-----------DDSLRGLDKPEEN 251 (503)
T ss_pred EEEEEEEcCC-CChhHHHHHHHHhCCe-----------------EEEeeeecceEe-----------cccccCccCCccc
Confidence 4678888777 8999999999988872 2221 111111 1223344556665
Q ss_pred ccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhc
Q 021445 96 FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (312)
Q Consensus 96 ~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~ 152 (312)
.. .-++|+|++.+.|.. ....||--.+.+. .-.|+|+|+|+.||++++--+.
T Consensus 252 ~~--~R~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 252 IE--KRRRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred cC--cccceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence 43 235799999998843 4568888776543 3458999999999999876544
No 158
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.91 E-value=0.0044 Score=51.07 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=53.9
Q ss_pred hhhhHhhhhhHHhh----------hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC--
Q 021445 212 VDSIKVFGNEHYKK----------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-- 279 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~----------~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~-- 279 (312)
++.|..-|..|... .-+++|+.+|++||. ++|.+..++.|++.+|..++.
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~------------------I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK------------------INPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh------------------cCCchHHHHHHHHHHHHHHHhhc
Confidence 34455555555433 346778888888887 899999999999999998763
Q ss_pred ---------HHHHHHHHHHHHHcCCCchHHHHHHHH
Q 021445 280 ---------LKGALLDTEFAMRDGDDNVKALFRQGQ 306 (312)
Q Consensus 280 ---------~~~Ai~~~~~al~l~p~~~Ka~~rrg~ 306 (312)
|++|.+++.+|...+|+|. +||++.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne--~Y~ksL 120 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE--LYRKSL 120 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHH
Confidence 8899999999999999985 555543
No 159
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.91 E-value=0.0016 Score=38.96 Aligned_cols=29 Identities=21% Similarity=0.105 Sum_probs=24.8
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+|.|+|.+|.++|+|++|++.+.++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999977543
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.85 E-value=0.0037 Score=55.44 Aligned_cols=73 Identities=11% Similarity=0.042 Sum_probs=61.9
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
..+.-.|..++..|+|++|+..|.+++..... .+....++.+++.|+.++|++++|+..+.++++
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999984221 244566899999999999999999999999999
Q ss_pred cCCCchHH
Q 021445 293 DGDDNVKA 300 (312)
Q Consensus 293 l~p~~~Ka 300 (312)
..|+..-|
T Consensus 246 ~yP~s~~a 253 (263)
T PRK10803 246 KYPGTDGA 253 (263)
T ss_pred HCcCCHHH
Confidence 99987744
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0051 Score=54.60 Aligned_cols=82 Identities=18% Similarity=0.107 Sum_probs=64.0
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC---CHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDT 287 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~~~Ai~~~ 287 (312)
.++.|--.|..++..+++..|...|.+|++ +.+.+..++.-.|.+++... .-.++...+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r------------------L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR------------------LAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 566788999999999999999999999999 45556666666777766654 356777777
Q ss_pred HHHHHcCCCchHHHHHHHHHhhh
Q 021445 288 EFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 288 ~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
++||.+||.++.+++-.|.++..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe 239 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFE 239 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHH
Confidence 78888888888887777776653
No 162
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.81 E-value=0.0074 Score=58.24 Aligned_cols=91 Identities=18% Similarity=0.055 Sum_probs=71.1
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..+.+.+..+-..++|++|...|+++++++...+ ...++.....+.|+|.+|+++|+|++|.+.+.+|
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~----------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP----------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc----------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 445567888888899999999999999999875321 1123456779999999999999999999999999
Q ss_pred HHcC--------CCchHHHHHHHHHhhhh
Q 021445 291 MRDG--------DDNVKALFRQGQVSIIL 311 (312)
Q Consensus 291 l~l~--------p~~~Ka~~rrg~a~~~L 311 (312)
|.+. +.-.+.+...|.+|..+
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 9553 33456777777777543
No 163
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.0049 Score=54.01 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=70.3
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
++++.+.+-.+++.|+|.+|...|..-|+-... ......++.=++.|++.+|+|++|...+..+.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN---------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------CcccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 344899999999999999999999999984322 12334467779999999999999999999999
Q ss_pred HcCCCchH---HHHHHHHHhhhh
Q 021445 292 RDGDDNVK---ALFRQGQVSIIL 311 (312)
Q Consensus 292 ~l~p~~~K---a~~rrg~a~~~L 311 (312)
+-.|++.| +++..|.+...|
T Consensus 206 k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 206 KDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HhCCCCCCChHHHHHHHHHHHHh
Confidence 99888776 599999988765
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.74 E-value=0.0029 Score=43.34 Aligned_cols=38 Identities=29% Similarity=0.218 Sum_probs=35.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 274 ~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+++.|+|++|++.+.+++..+|++..+++..|.+|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 38 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ 38 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 46889999999999999999999999999999999864
No 165
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.0017 Score=57.59 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=55.5
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..+.+.|.-+|++|+|++|+++|+.|+++ ....+.+-.|+|+|+++.++|..|++..++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqv------------------sGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQV------------------SGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhh------------------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4566789999999999999999999999994 3334557789999999999999999999998
Q ss_pred HH
Q 021445 291 MR 292 (312)
Q Consensus 291 l~ 292 (312)
++
T Consensus 205 ie 206 (459)
T KOG4340|consen 205 IE 206 (459)
T ss_pred HH
Confidence 84
No 166
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0053 Score=55.92 Aligned_cols=104 Identities=27% Similarity=0.444 Sum_probs=69.4
Q ss_pred eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEee--cCCeEEeCCCCCCCCCCCCcccCCCCC
Q 021445 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVI--KGFMIQGGDISAGDGTGGESIYGLKFE 92 (312)
Q Consensus 15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~--~~~~iq~G~~~~~~~~~~~~~~~~~~~ 92 (312)
...-.+.++|.++ +|+++++|+.|...+. .||. .+.+|. ..+....+.+
T Consensus 200 rifTy~eve~s~n-sP~saEH~lalmedG~-----------------lri~~~tntfis-----------~~~lq~~~~~ 250 (512)
T COG4070 200 RIFTYFEVELSRN-SPKSAEHFLALMEDGT-----------------LRIDVTTNTFIS-----------DDTLQEEKVP 250 (512)
T ss_pred EEEEEEEEEeCCC-CchhHHHHHHHhhcce-----------------EEEEEeccceee-----------ccccccccCC
Confidence 3345788999887 7999999999988762 2331 222221 1223345566
Q ss_pred CCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhc
Q 021445 93 DENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (312)
Q Consensus 93 ~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~ 152 (312)
.||+.++ .+|.|+..+.|-. ...-||.-.+-+. .-.|.|+|||++||++++--..
T Consensus 251 ~en~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 251 EENFDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhhhhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 6766544 4799999998733 4567887655332 2358999999999998876544
No 167
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.66 E-value=0.0059 Score=56.16 Aligned_cols=78 Identities=13% Similarity=0.042 Sum_probs=57.9
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.+...|..+...|++++|+..|+++++ +.|....++.++|.+++.+|++++|+..+.+++..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALE------------------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 344677788899999999999999998 34444667788888888888888888888888887
Q ss_pred CCCch----HHHHHHHHHhh
Q 021445 294 GDDNV----KALFRQGQVSI 309 (312)
Q Consensus 294 ~p~~~----Ka~~rrg~a~~ 309 (312)
.|... ..|+.+|.++.
T Consensus 178 ~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 178 WDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred cCCCcchhHHHHHHHHHHHH
Confidence 76432 23445565554
No 168
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.013 Score=53.23 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=68.3
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
-...+-..|.+-.|++||+.|++.|. -++....+-.++|+||+||.-|+-+-+...--|+--
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~------------------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQ------------------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF 215 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh------------------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC
Confidence 44566777888899999999999998 667888899999999999999999999999899999
Q ss_pred CCchHHHHHHHHHhhhh
Q 021445 295 DDNVKALFRQGQVSIIL 311 (312)
Q Consensus 295 p~~~Ka~~rrg~a~~~L 311 (312)
|+..-|.--++..++.|
T Consensus 216 pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRL 232 (557)
T ss_pred CCcHHHHHHHHHHHhhh
Confidence 99998888887766654
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.65 E-value=0.0056 Score=59.63 Aligned_cols=67 Identities=13% Similarity=-0.003 Sum_probs=57.2
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~ 296 (312)
..|-.+..+|++++|...|++|+. +++ ....|..+|.++...|++++|++.+.+|++++|.
T Consensus 425 ala~~~~~~g~~~~A~~~l~rAl~------------------L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 425 ILAVQALVKGKTDEAYQAINKAID------------------LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH------------------cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 345556678999999999999999 556 3678999999999999999999999999999999
Q ss_pred chHHHH
Q 021445 297 NVKALF 302 (312)
Q Consensus 297 ~~Ka~~ 302 (312)
++.-|.
T Consensus 486 ~pt~~~ 491 (517)
T PRK10153 486 ENTLYW 491 (517)
T ss_pred CchHHH
Confidence 875443
No 170
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.65 E-value=0.0037 Score=36.06 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~ 297 (312)
++.++|.|+.++|++++|++.+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67899999999999999999999999998864
No 171
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.62 E-value=0.0047 Score=55.11 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=36.1
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
+...|..++..|++++|+..|.+++. ..|.....+.+.|.++.+.|++++|+....++++
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~------------------~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALK------------------LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHH------------------HSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHhcccccccccccccccccc------------------cccccccccccccccccccccccccccccccccc
Confidence 35678888899999999999999998 6777889999999999999999999999988875
No 172
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.011 Score=57.19 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=63.4
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.+-+.+..+|+.++|..|++.|...+.++... ..+.....+..|++.||++|.+.+.|++...+|=+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D------------~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD------------NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccch------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 35688999999999999999999999965331 134455889999999999999999999999999999
Q ss_pred CCCchH
Q 021445 294 GDDNVK 299 (312)
Q Consensus 294 ~p~~~K 299 (312)
||.++-
T Consensus 424 d~~~~l 429 (872)
T KOG4814|consen 424 DRQSPL 429 (872)
T ss_pred ccccHH
Confidence 998763
No 173
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.59 E-value=0.0027 Score=37.55 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=22.9
Q ss_pred HHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 287 TEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 287 ~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
|++||+++|+++.+|+.+|.+|..+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~ 26 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQ 26 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHC
Confidence 7899999999999999999998754
No 174
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0041 Score=62.70 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=49.0
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHH-HHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+.+.+.|..+..+|+|++|...|.+++.. ++. ....+.-+++.|++.++++.|+.++++++
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~------------------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKA------------------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHcc------------------CCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 33556666666666666666666666662 111 23345566666666666666666666666
Q ss_pred HcCCCchHHHHHHHHHhhh
Q 021445 292 RDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~ 310 (312)
+..|++.+...-.|..|..
T Consensus 370 k~~p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAH 388 (1018)
T ss_pred HhCcchHHHHHHHHhHHHh
Confidence 6666666666666665544
No 175
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.57 E-value=0.015 Score=54.96 Aligned_cols=114 Identities=19% Similarity=0.311 Sum_probs=71.2
Q ss_pred EEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCCcccc
Q 021445 19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL 98 (312)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 98 (312)
-|.|+||.+.||.++..|.++.--.... ==-..+|-..++..+--|+.. ++..+.+||.+-
T Consensus 376 vi~IeLydd~AP~s~~yFRk~tGL~~~~---------VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~ 436 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFTGLKTKP---------VGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPE 436 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhcCCcccc---------cceeEEEEEeCCeeEeccCch----------hccccCCCCCCC
Confidence 5889999999999999999985443100 112456667777655544432 123356677666
Q ss_pred cCCCcceEEeecCCCC---CCCceEEEe--cCCC-CCCCCCCceEEEEEeChHHHHHHhc
Q 021445 99 KHERKGMLSMANAGPN---TNGSQFFIT--TTRT-SHLDGKHVVFGRVIKGMGVVRSIEH 152 (312)
Q Consensus 99 ~~~~~G~l~~~~~~~~---~~~sqF~I~--~~~~-~~ld~~~~vfG~V~~G~~vl~~i~~ 152 (312)
....+|.|++.|.... ..|-+|-=+ ++|. ..+++.+ ++|+|+++++.|.++..
T Consensus 437 ~~V~ag~IgvTN~a~k~~G~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 437 DKVEAGVIGVTNQACKHVGMIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKE 495 (503)
T ss_pred CccccceEeeechhhhcCceEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhccccc
Confidence 6678899998876422 112221111 1332 2455544 56999999999988765
No 176
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.57 E-value=0.011 Score=59.15 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=72.4
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---------cCCCCchh-------hhHHHHHHHHHHhHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEGK-------SSSLRKTKSQIFTNSSACK 274 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---------~~~~~~~~-------~~~~~~~~~~~~~N~a~~~ 274 (312)
.+..+..++|.+|-.|++++|.+...++|+.-...+. .+..+-+. ...++|.....|.-++--.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4778899999999999999999999999984211100 00001000 1123444445666666677
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
.+++++.+|.-++++||+.+|.+.+-+++|+..|..+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~ 254 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT 254 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 7788889999999999999999999999999888643
No 177
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.51 E-value=0.014 Score=53.67 Aligned_cols=100 Identities=11% Similarity=-0.062 Sum_probs=72.5
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc-----------cC-CCCchhh-h------HHHHHHHHHHhHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------KE-GIDEGKS-S------SLRKTKSQIFTNSSA 272 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~-----------~~-~~~~~~~-~------~~~~~~~~~~~N~a~ 272 (312)
.+...-++..++..|++++|+..+.++++....... .. ....... . ...+.....+.++|.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 344566788999999999999999999875321110 00 0000000 0 123444567789999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 273 ~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
++..+|++++|+..+.++++++|++.-++...|.+++.+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999888753
No 178
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.0096 Score=60.17 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=72.1
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
...|.+.|+.++..|+|..|++.|+.+++.+. ......++.-+|.++++-+.|.+|.+...+|+
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~----------------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY----------------KKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc----------------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44578999999999999999999999998542 23345577779999999999999999999999
Q ss_pred HcCCCchHHHHHHHHHhhhh
Q 021445 292 RDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~L 311 (312)
.+.|.+.-..|..|.++..+
T Consensus 744 ~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 744 HLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HhCCccchHHhHHHHHHHHH
Confidence 99999999999999887654
No 179
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.35 E-value=0.019 Score=40.62 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=56.6
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+....++|-.+|.+.+.++|+..+++||+-... .+..-.++--++.+|..+|+|.++++.+.+=
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~---------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD---------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999999999995322 3456678888999999999999999998877
Q ss_pred HHc
Q 021445 291 MRD 293 (312)
Q Consensus 291 l~l 293 (312)
+.+
T Consensus 70 ~~~ 72 (80)
T PF10579_consen 70 LEI 72 (80)
T ss_pred HHH
Confidence 654
No 180
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.31 E-value=0.017 Score=59.30 Aligned_cols=99 Identities=7% Similarity=-0.129 Sum_probs=68.7
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc-c--------cCCCCchhhhH-H------HHHHHHHHhHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-E--------KEGIDEGKSSS-L------RKTKSQIFTNSSACKL 275 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~-~--------~~~~~~~~~~~-~------~~~~~~~~~N~a~~~~ 275 (312)
+.....++-..+++|+|..|+..|.++++.-...+ . ......++... + .+.....+..+|..+.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 44578899999999999999999999997432211 0 00011111110 0 1222445555678999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 276 kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
.+|+|++|++.+.++++.+|+++.+++-.+.++..
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999866665543
No 181
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.22 E-value=0.0079 Score=35.12 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=26.2
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRY 241 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~ 241 (312)
|..+...|..++..++|++|+..|++||++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 356789999999999999999999999993
No 182
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.22 E-value=0.011 Score=55.45 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=57.0
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..|..++.-+.++++|+.|+...++|++ +.|.....|..+|.||.++|+|++|+...+.+-
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~------------------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVE------------------LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 56678899999999999999999999999 678888999999999999999999998887554
Q ss_pred Hc
Q 021445 292 RD 293 (312)
Q Consensus 292 ~l 293 (312)
.+
T Consensus 296 m~ 297 (395)
T PF09295_consen 296 ML 297 (395)
T ss_pred CC
Confidence 44
No 183
>PRK00969 hypothetical protein; Provisional
Probab=96.16 E-value=0.032 Score=52.90 Aligned_cols=112 Identities=19% Similarity=0.291 Sum_probs=71.4
Q ss_pred EEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCCcccc
Q 021445 19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL 98 (312)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 98 (312)
-|.|+||.+.||.++..|.++.--.... ==-..+|-..++.++--|+.. ++..+.+||.+-
T Consensus 379 vi~IeLydd~AP~s~~yFR~~tGL~~~~---------VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~ 439 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVTGLKTKP---------VGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPE 439 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhcCCcccc---------cceeEEEEEeCCeEEEccChh----------hccccCCCCCCC
Confidence 5889999999999999999985543100 112456667788666655432 133356777766
Q ss_pred cCCCcceEEeecCCCCCCCceEEEec------CCC-CCCCCCCceEEEEEeChHHHHHHhc
Q 021445 99 KHERKGMLSMANAGPNTNGSQFFITT------TRT-SHLDGKHVVFGRVIKGMGVVRSIEH 152 (312)
Q Consensus 99 ~~~~~G~l~~~~~~~~~~~sqF~I~~------~~~-~~ld~~~~vfG~V~~G~~vl~~i~~ 152 (312)
....+|.|++.|......| -.=|-| +|. ..+++ --++|+|+ +++.|.++..
T Consensus 440 ~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 440 DKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhccccc
Confidence 6778899998876422111 111222 332 24555 34679999 9998888765
No 184
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.09 E-value=0.01 Score=34.48 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.0
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRY 241 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~ 241 (312)
++.+...|..+++.|+|++|++.|++|+++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356788999999999999999999999984
No 185
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.06 E-value=0.038 Score=53.28 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=66.4
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+..+|.-+..+|+.++|++.|++|+.. .....+....++.-++.|++-+.+|++|.+++.+.++.+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~--------------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIES--------------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccc--------------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 577888899999999999999999962 223677788899999999999999999999999999965
Q ss_pred CCchHHHHHHHHH
Q 021445 295 DDNVKALFRQGQV 307 (312)
Q Consensus 295 p~~~Ka~~rrg~a 307 (312)
.+.||+|....|
T Consensus 336 -~WSka~Y~Y~~a 347 (468)
T PF10300_consen 336 -KWSKAFYAYLAA 347 (468)
T ss_pred -ccHHHHHHHHHH
Confidence 688998876544
No 186
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.02 E-value=0.0073 Score=56.76 Aligned_cols=73 Identities=23% Similarity=0.254 Sum_probs=65.5
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+-+++-+.++.++|..|+....+||+ +.|....+|.-+|.+++++++|.+|+.++.++..+.
T Consensus 41 ~anRa~a~lK~e~~~~Al~Da~kaie------------------~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 41 FANRALAHLKVESFGGALHDALKAIE------------------LDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred echhhhhheeechhhhHHHHHHhhhh------------------cCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 34567788899999999999999999 779999999999999999999999999999999999
Q ss_pred CCchHHHHHHH
Q 021445 295 DDNVKALFRQG 305 (312)
Q Consensus 295 p~~~Ka~~rrg 305 (312)
|+.+++.-.-.
T Consensus 103 Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 103 PNDPDATRKID 113 (476)
T ss_pred cCcHHHHHHHH
Confidence 99988764433
No 187
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.94 E-value=0.017 Score=35.14 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=26.9
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+.++.|+|.+|..+|+|++|+..+.+++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578999999999999999999999999653
No 188
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.86 E-value=0.011 Score=53.39 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=41.9
Q ss_pred HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
...+++-+|.|++.+|+|++|.+...+||..+|+++.++..++.+...+
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL 248 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence 3557788999999999999999999999999999999999998876553
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.80 E-value=0.052 Score=42.12 Aligned_cols=80 Identities=15% Similarity=0.030 Sum_probs=61.8
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
...+.+.|..+...|++++|+...++++.-.. -.+....+...+|.++..+|++++|+..+-.+|
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p---------------~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFP---------------DDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45677899999999999999999999997211 012244566778999999999999999999998
Q ss_pred HcCCCchHHHHHHHHHhhh
Q 021445 292 RDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~a~~~ 310 (312)
.-... .|+|+...+.
T Consensus 103 a~~~~----~y~ra~~~ya 117 (120)
T PF12688_consen 103 AETLP----RYRRAIRFYA 117 (120)
T ss_pred HHHHH----HHHHHHHHHH
Confidence 63322 7888877654
No 190
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.027 Score=52.21 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=69.7
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
..+.+.-+|+.+...++.++|+-.|+.|+. +.|....+|--+-.||+..+++++|+-.++.+
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQM------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHh------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 456688899999999999999999999999 77888999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHH
Q 021445 291 MRDGDDNVKALFRQG 305 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg 305 (312)
++.=|.+++++---|
T Consensus 395 ~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 395 IRLFQNSARSLTLFG 409 (564)
T ss_pred HHHhhcchhhhhhhc
Confidence 998889988887654
No 191
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.77 E-value=0.026 Score=57.95 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=44.2
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
..+...|..+..+|+|++|++.|+++++ ..|....++.-++..+..++++++|++.+.+++.
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~------------------~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLK------------------KDPTNPDLISGMIMTQADAGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence 3455667788888999999999999998 3333334444455566666666666666666666
Q ss_pred cCCC
Q 021445 293 DGDD 296 (312)
Q Consensus 293 l~p~ 296 (312)
.+|.
T Consensus 165 ~dp~ 168 (822)
T PRK14574 165 RDPT 168 (822)
T ss_pred cCcc
Confidence 6555
No 192
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.69 E-value=0.028 Score=54.69 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=63.3
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
|.-.|--.-..++|.+||.||+.||. +.+....++.-+|....+|++|+.....-.+.|+++
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~------------------~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALK------------------IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHh------------------cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 44556666677889999999999998 667778888889999999999999999999999999
Q ss_pred CCchHHHHHHHHHhh
Q 021445 295 DDNVKALFRQGQVSI 309 (312)
Q Consensus 295 p~~~Ka~~rrg~a~~ 309 (312)
|.+.-.|+--|.|+.
T Consensus 140 ~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQH 154 (700)
T ss_pred hhhHHHHHHHHHHHH
Confidence 988888877777664
No 193
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.67 E-value=0.13 Score=41.03 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=63.0
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
+.+..........+..+++..+...+.+.+.-.. -.+.-..+.+.+|.+++..|+|++|+..+.+
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYP---------------SSPYAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455556666666677777777666666665211 1233456788899999999999999999999
Q ss_pred HHHcCCCc---hHHHHHHHHHhhhh
Q 021445 290 AMRDGDDN---VKALFRQGQVSIIL 311 (312)
Q Consensus 290 al~l~p~~---~Ka~~rrg~a~~~L 311 (312)
++...|+. ..+.+|.|.+++.+
T Consensus 74 ~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 74 ALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 99977554 46888999888754
No 194
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.63 E-value=0.018 Score=34.30 Aligned_cols=27 Identities=26% Similarity=0.456 Sum_probs=23.4
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRY 241 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~ 241 (312)
+...|+.+.+.|+|++|+..|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567899999999999999999998864
No 195
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=95.58 E-value=0.066 Score=37.89 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=41.7
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK 274 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~ 274 (312)
+.|..+-.++..+=+.|+|++|+.+|.+||++|.........++.....+ ...+.=|.+||...
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~i-r~K~~eYl~RAE~L 67 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTI-QEKSNEYLDRAQAL 67 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHH
Confidence 35667788889999999999999999999998855322222232222222 34444566665543
No 196
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.57 E-value=0.0098 Score=53.46 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=36.2
Q ss_pred HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC---CchHHHHHHHHH
Q 021445 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD---DNVKALFRQGQV 307 (312)
Q Consensus 260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p---~~~Ka~~rrg~a 307 (312)
.-....+|+|+++|++.-++++-++..+.+||..-. .-+..||+.|.+
T Consensus 354 G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 354 GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence 334456899999999999999999999999986532 345667776643
No 197
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.54 E-value=0.029 Score=53.01 Aligned_cols=97 Identities=20% Similarity=0.149 Sum_probs=74.3
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHH-HhhhccccCCCCchhhhH-HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEKEGIDEGKSSS-LRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~-~l~~~~~~~~~~~~~~~~-~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
.-.+.+.|.-.|+-+.|+.++..|.+||+ .+..... ...+....+ .......+++|.+..|+..|++..|.+++.+
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN--GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc--cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 33457889999999999999999999996 3332211 111111111 2344566899999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHhhh
Q 021445 290 AMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 290 al~l~p~~~Ka~~rrg~a~~~ 310 (312)
+...--.|+..|.|.|.|.++
T Consensus 361 av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHH
Confidence 999888999999999998864
No 198
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.51 E-value=0.061 Score=55.31 Aligned_cols=46 Identities=13% Similarity=-0.046 Sum_probs=41.9
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
.++..+|.||-+||++++|...++++|++||+|+-++-+.|..|..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 4888899999999999999999999999999999999998887753
No 199
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.51 E-value=0.023 Score=50.70 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=68.2
Q ss_pred hhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHH
Q 021445 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (312)
Q Consensus 205 ~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai 284 (312)
.....+...++ ..+....+.|+.++|...|..||. +.|....++.-.+.-.-.-++.-+|=
T Consensus 110 pa~~kEA~~Al-~~A~~~~~~Gk~ekA~~lfeHAla------------------laP~~p~~L~e~G~f~E~~~~iv~AD 170 (472)
T KOG3824|consen 110 PAKVKEAILAL-KAAGRSRKDGKLEKAMTLFEHALA------------------LAPTNPQILIEMGQFREMHNEIVEAD 170 (472)
T ss_pred chhhHHHHHHH-HHHHHHHhccchHHHHHHHHHHHh------------------cCCCCHHHHHHHhHHHHhhhhhHhhh
Confidence 33333344444 456678899999999999999999 66777778888888777778888999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHH
Q 021445 285 LDTEFAMRDGDDNVKALFRQGQV 307 (312)
Q Consensus 285 ~~~~~al~l~p~~~Ka~~rrg~a 307 (312)
.++.+||.++|.|.+|+..|++.
T Consensus 171 q~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 171 QCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred hhhheeeeeCCCchHHHhhhhcc
Confidence 99999999999999999998764
No 200
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=95.48 E-value=0.088 Score=37.07 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=42.6
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK 276 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k 276 (312)
+.|..+..++-.+=++|+|.+|+.+|++|+++|....... .++.....-...+.=|.||+...-+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~--pD~~~k~~yr~ki~eY~~Rae~Lk~ 68 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNY--PDSPTRLIYEQMINEYKRRIEVLEK 68 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788899999999999999999999999876532111 1111122334445556666665443
No 201
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.48 E-value=0.11 Score=38.42 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=48.6
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 222 ~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
..+.++|.+|++...+..++..... ..........+.+|+|..+..+|++++|+..+++|+++-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~---------~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSN---------NSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcc---------cchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4567999999999998888643310 000023455678999999999999999999999999764
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.29 E-value=0.023 Score=52.65 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=62.5
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH-
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR- 292 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~- 292 (312)
.+-+.||.+|-.|+|+.||..-+.-|++..... -......+|+|++.||+-+++|+.|++++.+.|.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG------------DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG------------DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhh------------hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 345789999999999999998888887533210 2334456899999999999999999999998873
Q ss_pred ---cCCCc--hHHHHHHHHHhhhh
Q 021445 293 ---DGDDN--VKALFRQGQVSIIL 311 (312)
Q Consensus 293 ---l~p~~--~Ka~~rrg~a~~~L 311 (312)
+...- +..-|-.|.+|..|
T Consensus 265 Aielg~r~vEAQscYSLgNtytll 288 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLL 288 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHH
Confidence 33333 34455566666543
No 203
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.23 E-value=0.024 Score=55.85 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=65.1
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
...|...|..+.+.++++.|..+|++++. +.|.....++|++.+|+++++-.+|.....+||
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvt------------------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVT------------------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhh------------------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 44578999999999999999999999999 788889999999999999999999999999999
Q ss_pred HcCCCchHHH
Q 021445 292 RDGDDNVKAL 301 (312)
Q Consensus 292 ~l~p~~~Ka~ 301 (312)
+.+-.+.+.|
T Consensus 581 Kcn~~~w~iW 590 (777)
T KOG1128|consen 581 KCNYQHWQIW 590 (777)
T ss_pred hcCCCCCeee
Confidence 9887666654
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.018 Score=50.40 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=55.3
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
.++.+-.+.-+++|.+|...|++.+. .++..+.+-+|.|+|.+-+|+..+|++..+.+++.+
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~------------------~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILR------------------MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccc------------------cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45666666678889999999999988 566678888999999999999999999999999999
Q ss_pred CCc
Q 021445 295 DDN 297 (312)
Q Consensus 295 p~~ 297 (312)
|..
T Consensus 317 P~~ 319 (366)
T KOG2796|consen 317 PRH 319 (366)
T ss_pred Ccc
Confidence 863
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.15 E-value=0.022 Score=35.56 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=33.5
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHH
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~ 272 (312)
.+...|..+...|++++|++.|+++|+ ..|....++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~------------------~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA------------------LDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCcCCHHHHHHhhh
Confidence 456788999999999999999999999 55666667666654
No 206
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.12 E-value=0.089 Score=49.69 Aligned_cols=52 Identities=10% Similarity=-0.023 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
.|....+..-++..+++.++..+|++.+.+++.++|...-..+..|++|+++
T Consensus 336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 336 QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 3455667777999999999999999999999999999999999999999764
No 207
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.11 E-value=0.085 Score=47.28 Aligned_cols=65 Identities=18% Similarity=0.089 Sum_probs=43.1
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc-CCHHHHHHHHHHHHHc
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEFAMRD 293 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl-~~~~~Ai~~~~~al~l 293 (312)
..+-.++++.++.+|+.+|++|++++.... ....-..++.++|..|.+. +++++|++.+.+|+.+
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G------------~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREAG------------RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444555566777777777776543310 2234466889999999998 9999999999999965
No 208
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.10 E-value=0.16 Score=39.83 Aligned_cols=75 Identities=21% Similarity=0.125 Sum_probs=62.7
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..+.+++..+--+|+-++|++...+|+++-.. ........|..|+..|-.+|+-+.|..|+..|
T Consensus 76 raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--------------~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 76 RASAYNNRAQALRLQGDDEEALDDLNKALELAGD--------------QTRTACQAFVQRGLLYRLLGNDDAARADFEAA 141 (175)
T ss_pred chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--------------cchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence 4566788888888999999999999999996433 23445778999999999999999999999999
Q ss_pred HHcCCCchH
Q 021445 291 MRDGDDNVK 299 (312)
Q Consensus 291 l~l~p~~~K 299 (312)
-++-...++
T Consensus 142 A~LGS~FAr 150 (175)
T KOG4555|consen 142 AQLGSKFAR 150 (175)
T ss_pred HHhCCHHHH
Confidence 988766554
No 209
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=95.06 E-value=0.15 Score=35.25 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=31.2
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhc
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~ 245 (312)
++.+..+..+|-.+=+.|+|++|+.+|++|+++|...
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3456677788888889999999999999999988664
No 210
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.03 E-value=0.12 Score=50.25 Aligned_cols=72 Identities=18% Similarity=0.082 Sum_probs=56.3
Q ss_pred hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (312)
Q Consensus 219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~ 298 (312)
...+...|+|++|++...+.... -.....++--+|.++++||++++|...+...|..+|+|.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~------------------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ------------------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 33445668888888877665552 233566788899999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 021445 299 KALFRQGQVS 308 (312)
Q Consensus 299 Ka~~rrg~a~ 308 (312)
.-|.....|+
T Consensus 73 ~Yy~~L~~~~ 82 (517)
T PF12569_consen 73 DYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHH
Confidence 7776666665
No 211
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.99 E-value=0.11 Score=49.13 Aligned_cols=75 Identities=11% Similarity=0.016 Sum_probs=56.5
Q ss_pred hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHH-HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (312)
Q Consensus 219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~ 297 (312)
+-...+.|+++.|...|.+|.+. .|.. .....-.+..++..|++++|+..++++++.+|++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~------------------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~ 186 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL------------------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH 186 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc------------------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 44446777777777777777762 2221 1223345889999999999999999999999999
Q ss_pred hHHHHHHHHHhhhh
Q 021445 298 VKALFRQGQVSIIL 311 (312)
Q Consensus 298 ~Ka~~rrg~a~~~L 311 (312)
+.++...+.+|...
T Consensus 187 ~~al~ll~~~~~~~ 200 (398)
T PRK10747 187 PEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888654
No 212
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.94 E-value=0.11 Score=49.20 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=55.4
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHH-HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
-.|..+.++|+++.|...|.++.+. .|.. ..+...++..++..+++++|+..++++++..|
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~------------------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P 184 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAEL------------------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAP 184 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh------------------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3444455556666666666665542 1222 12445568889999999999999999999999
Q ss_pred CchHHHHHHHHHhhhh
Q 021445 296 DNVKALFRQGQVSIIL 311 (312)
Q Consensus 296 ~~~Ka~~rrg~a~~~L 311 (312)
+++.++...+.++..+
T Consensus 185 ~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 185 RHKEVLKLAEEAYIRS 200 (409)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888654
No 213
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.89 E-value=0.31 Score=40.58 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=57.8
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
-..+.+.|+-+.+-|++++|++.|.++.+++.. ....+.+++|+-.+.+.+++|..+....++|-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS---------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445789999999999999999999999986543 34567788999999999999999999999987
Q ss_pred HcC
Q 021445 292 RDG 294 (312)
Q Consensus 292 ~l~ 294 (312)
.+-
T Consensus 101 ~~~ 103 (177)
T PF10602_consen 101 SLI 103 (177)
T ss_pred HHH
Confidence 554
No 214
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.87 E-value=0.11 Score=40.78 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=38.3
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHh
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVS 308 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~ 308 (312)
..+..-+|..|+++++|++++.+++..|+.+|+|..|.--+-...
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIE 115 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 446667999999999999999999999999999998876654443
No 215
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.83 E-value=0.17 Score=52.21 Aligned_cols=99 Identities=10% Similarity=0.005 Sum_probs=69.3
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc----------cCCCCchhhhHHHHHHHHHHhHHH---------
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------KEGIDEGKSSSLRKTKSQIFTNSS--------- 271 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~N~a--------- 271 (312)
.+..+.+-|-.+-.+ +.++|...|.+|+..+-.... --..++++-..+-.....+...+.
T Consensus 149 n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 149 NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 466677788777777 899999999999876422110 001112222222223333344444
Q ss_pred ---HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 272 ---ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 272 ---~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
.||-++++|++++.....+|+++|+|.+|.+..+.||..
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 899999999999999999999999999999999999864
No 216
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.089 Score=48.19 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=63.4
Q ss_pred EEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCC--eEEeCCCCCCCCCCCCcccCCCCCCCcc
Q 021445 19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGF--MIQGGDISAGDGTGGESIYGLKFEDENF 96 (312)
Q Consensus 19 ~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 96 (312)
-|.||||.+.||.++..|.++..-.. ++ --...+|-+.++. ++.-|+.. ++..+.+||.
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~-------kp--VGkL~Vhfay~d~~~vmfegn~~----------~~K~llPEN~ 437 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKT-------KP--VGKLKVHFAYDDTYLVMFEGNAV----------LAKGLLPENT 437 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhccccc-------cc--ccceEEEEEeCCceEEEEcCChH----------HhccCCCCCC
Confidence 48999999999999999999865431 11 1124566667773 22233322 2223445555
Q ss_pred cccCCCcceEEeecCCCCCCCceEEEec------CCC-CCCCCCCceEEEEEeChHHHHHHhc
Q 021445 97 ELKHERKGMLSMANAGPNTNGSQFFITT------TRT-SHLDGKHVVFGRVIKGMGVVRSIEH 152 (312)
Q Consensus 97 ~~~~~~~G~l~~~~~~~~~~~sqF~I~~------~~~-~~ld~~~~vfG~V~~G~~vl~~i~~ 152 (312)
+-....+|.|+..|......| -.-+-| +|. ..+.+ .-++|+|++|.+-|..|..
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe~-TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFEG-TNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred chhheecccccccccchhccc-eeEEEeccccccCCCCCcccc-ceeehhhccChHHhccccc
Confidence 444445555554443211000 011112 222 23334 4578999999999988876
No 217
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=0.21 Score=48.34 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=67.6
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
-+.+.+.+..+...|+|.+|++...+|++++......++.++|+ +......+..-+|.++..+|+-++|...+...|
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEe---ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEE---IEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhh---HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 44578899999999999999999999988776543333333333 566677788899999999999999999999999
Q ss_pred HcCCCch
Q 021445 292 RDGDDNV 298 (312)
Q Consensus 292 ~l~p~~~ 298 (312)
+.+|.+.
T Consensus 252 ~~~~~D~ 258 (652)
T KOG2376|consen 252 KRNPADE 258 (652)
T ss_pred HhcCCCc
Confidence 8887654
No 218
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.25 Score=43.16 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=65.8
Q ss_pred CCCCCCCCCCCCCCCCCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHH
Q 021445 187 DGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI 266 (312)
Q Consensus 187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (312)
+.+.|+..+.|+. .+..-..+.+..+|.+|..+ +||+.-.+=++.+ .....+
T Consensus 105 A~e~y~~lL~ddp---t~~v~~KRKlAilka~GK~l-------~aIk~ln~YL~~F------------------~~D~EA 156 (289)
T KOG3060|consen 105 AIEYYESLLEDDP---TDTVIRKRKLAILKAQGKNL-------EAIKELNEYLDKF------------------MNDQEA 156 (289)
T ss_pred HHHHHHHHhccCc---chhHHHHHHHHHHHHcCCcH-------HHHHHHHHHHHHh------------------cCcHHH
Confidence 3444555555543 23333334455555555444 6666555555532 335668
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 267 ~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
|.-+|..|+.+++|++|+-++++++-++|.++--+-|.|..++-
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888877753
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.61 E-value=0.15 Score=40.65 Aligned_cols=62 Identities=21% Similarity=0.197 Sum_probs=51.8
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
...+...+..+...|++.+|+..+++++. ++|..-.+|.-+-.||..+|++.+|++.+.+..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~------------------~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALA------------------LDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH------------------HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44456777778889999999999999999 778888899999999999999999999988875
No 220
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=94.54 E-value=0.22 Score=35.30 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=41.3
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK 274 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~ 274 (312)
.+..+..+|..+=+.|+|++|+.+|.+||++|......+ +++.- ...-.....-|.+||...
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e-~d~~~-k~~~r~ki~eY~~RAE~L 66 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGT-KDEAK-KKNLRQKISEYMDRAEAI 66 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhC-CCHHH-HHHHHHHHHHHHHHHHHH
Confidence 566778888999999999999999999999987643222 22211 222333444566666543
No 221
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.54 E-value=0.19 Score=43.77 Aligned_cols=78 Identities=22% Similarity=0.182 Sum_probs=65.0
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
+.+-.+|-.+-+.|++++|-..|.+|++ +.+-...+++|++..|+-.|+++.|......+-.
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~------------------L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALE------------------LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHH------------------hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3467899999999999999999999999 5566677899999999999999999999988887
Q ss_pred cCCCchHHHHHHHHHh
Q 021445 293 DGDDNVKALFRQGQVS 308 (312)
Q Consensus 293 l~p~~~Ka~~rrg~a~ 308 (312)
.-+.+....-.++.+.
T Consensus 197 ~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 197 SPAADSRVRQNLALVV 212 (257)
T ss_pred CCCCchHHHHHHHHHH
Confidence 7776666665555543
No 222
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.1 Score=46.62 Aligned_cols=72 Identities=13% Similarity=-0.013 Sum_probs=56.6
Q ss_pred hHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (312)
Q Consensus 221 ~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka 300 (312)
.+.+..+|..||++.+--.+ ..|.....++-++.||+..++|..|..++++...+.|...+-
T Consensus 19 ~lI~d~ry~DaI~~l~s~~E------------------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELE------------------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 34677778888777665555 445556678889999999999999999999999999998877
Q ss_pred HHHHHHHhhh
Q 021445 301 LFRQGQVSII 310 (312)
Q Consensus 301 ~~rrg~a~~~ 310 (312)
-+..|+.++.
T Consensus 81 rlY~AQSLY~ 90 (459)
T KOG4340|consen 81 RLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHH
Confidence 6666766653
No 223
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.50 E-value=0.12 Score=52.87 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=67.9
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC-HHHHHHHHHHHHH
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEFAMR 292 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~-~~~Ai~~~~~al~ 292 (312)
.....+.+..+.++|++|++.-.++|+ .+|....++.=++.++..++. .++|-+++-.|.+
T Consensus 4 ~aLK~Ak~al~nk~YeealEqskkvLk------------------~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaK 65 (1238)
T KOG1127|consen 4 TALKSAKDALRNKEYEEALEQSKKVLK------------------EDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAK 65 (1238)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHh------------------cCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHh
Confidence 345567888899999999999999999 667777788889999999998 9999999999999
Q ss_pred cCCCchHHHHHHHHHhh
Q 021445 293 DGDDNVKALFRQGQVSI 309 (312)
Q Consensus 293 l~p~~~Ka~~rrg~a~~ 309 (312)
++|++.-||--.+.-|.
T Consensus 66 ldpdnlLAWkGL~nLye 82 (1238)
T KOG1127|consen 66 LDPDNLLAWKGLGNLYE 82 (1238)
T ss_pred cChhhhHHHHHHHHHHH
Confidence 99999999877766554
No 224
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.48 E-value=0.37 Score=37.11 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=52.7
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
-....+-+.|+|++++..-.+||.|++.. -+.+++ --.+.+.+-.|||.++-.+|+.++|+..+..+-+
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR---GEL~qd----eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRR---GELHQD----EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH-----TTST----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhc---cccccc----cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 34556778999999999999999999873 222222 2356678889999999999999999999998864
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.35 E-value=0.1 Score=48.51 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=53.2
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+-++-.+|..++|.|++..-+..|++||+.=.. --..++.+|+.++.+|+-|++|.+|+++-..-
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTe--------------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hD 81 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTE--------------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHD 81 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch--------------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhh
Confidence 3567889999999999999999999999985211 23456778999999999999888888765554
Q ss_pred H
Q 021445 291 M 291 (312)
Q Consensus 291 l 291 (312)
|
T Consensus 82 l 82 (639)
T KOG1130|consen 82 L 82 (639)
T ss_pred H
Confidence 4
No 226
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.085 Score=47.62 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=60.0
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+-+++-..+--|+|..|+..-++|+. ++|....+|.--|.|++.|+++.+|+..|+..|+++
T Consensus 122 Y~NRAAa~~~l~NyRs~l~Dcs~al~------------------~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 122 YTNRAAAQLYLGNYRSALNDCSAALK------------------LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHh------------------cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45677777778999999999999999 788999999999999999999999999999999888
Q ss_pred CCchHHH
Q 021445 295 DDNVKAL 301 (312)
Q Consensus 295 p~~~Ka~ 301 (312)
...-++.
T Consensus 184 ~e~K~~~ 190 (390)
T KOG0551|consen 184 DEAKKAI 190 (390)
T ss_pred HHHHHHH
Confidence 6554443
No 227
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.00 E-value=0.15 Score=49.62 Aligned_cols=49 Identities=14% Similarity=-0.008 Sum_probs=44.8
Q ss_pred HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
..-++.-+|++|..+|++++|++..++||+..|+.+..|+.+|++|-++
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence 4557788999999999999999999999999999999999999998653
No 228
>PRK10941 hypothetical protein; Provisional
Probab=93.84 E-value=0.35 Score=43.07 Aligned_cols=76 Identities=12% Similarity=0.145 Sum_probs=64.2
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+.+.-..+.++++|+.|+++-...|. +.|....-+.-||.+|.+|+.+..|+.|.+.-++.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~------------------l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ------------------FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45566678899999999999999998 555566667789999999999999999999999999
Q ss_pred CCchHHHHHHHHHh
Q 021445 295 DDNVKALFRQGQVS 308 (312)
Q Consensus 295 p~~~Ka~~rrg~a~ 308 (312)
|+.+-+-.-|.+..
T Consensus 246 P~dp~a~~ik~ql~ 259 (269)
T PRK10941 246 PEDPISEMIRAQIH 259 (269)
T ss_pred CCchhHHHHHHHHH
Confidence 99988877666543
No 229
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=93.77 E-value=0.3 Score=34.44 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=32.6
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~ 246 (312)
++.|..+..+|...=..|+|++|+.+|..||++|....
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999999886643
No 230
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=93.76 E-value=0.33 Score=34.23 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=41.2
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHH
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~ 272 (312)
+..|..+..+|...=+.|+|++|+.+|..||+++......+ .++.. ...-..+..=|+.||.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e-~~~~~-k~~ir~K~~eYl~RAE 64 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGD-SSPER-REAVKRKIAEYLKRAE 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-CCHHH-HHHHHHHHHHHHHHHH
Confidence 34566777888888899999999999999999986643222 22222 2223334445666654
No 231
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.37 Score=41.95 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=64.8
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+.+...-+.+.++|-++++.-+..|. ..|....+|.-||-++...=+..+|-.|+.++|+++
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~------------------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILR------------------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHh------------------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 45667777788999999999888888 667788999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHh
Q 021445 295 DDNVKALFRQGQVS 308 (312)
Q Consensus 295 p~~~Ka~~rrg~a~ 308 (312)
|.-+++--|--+++
T Consensus 295 pslasvVsrElr~l 308 (329)
T KOG0545|consen 295 PSLASVVSRELRLL 308 (329)
T ss_pred hhhHHHHHHHHHHH
Confidence 98877766654443
No 232
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.72 E-value=0.13 Score=46.53 Aligned_cols=84 Identities=10% Similarity=-0.034 Sum_probs=57.0
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHHHhhhccc--------cCCCCchh-------hhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWE--------KEGIDEGK-------SSSLRKTKSQIFTNSSACKLKLGDLK 281 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~--------~~~~~~~~-------~~~~~~~~~~~~~N~a~~~~kl~~~~ 281 (312)
+.|.-+++.|-+.+|...++.+|........ ..-..++. ..+..|.....++-.|..|..|++++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 5677777777777777777777653211000 00001111 01134677888899999999999999
Q ss_pred HHHHHHHHHHHcCCCchHH
Q 021445 282 GALLDTEFAMRDGDDNVKA 300 (312)
Q Consensus 282 ~Ai~~~~~al~l~p~~~Ka 300 (312)
+|++.+..+|+++|.|+.|
T Consensus 308 ~a~~lYk~vlk~~~~nvEa 326 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEA 326 (478)
T ss_pred HHHHHHHHHHhcCCcccee
Confidence 9999999999999988875
No 233
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.71 E-value=0.7 Score=35.71 Aligned_cols=82 Identities=13% Similarity=0.022 Sum_probs=60.6
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH----H
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE----F 289 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~----~ 289 (312)
+.-..|+..++++++-.|+-+|++|+...+... ..++.+..++--..+...-|+|.-+-.+|+.+-.+++.. +
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~---~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEID---ESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc---ccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455689999999999999999999999765542 223333333555566677899999999999988888764 4
Q ss_pred HHHcCCCch
Q 021445 290 AMRDGDDNV 298 (312)
Q Consensus 290 al~l~p~~~ 298 (312)
++.+-|..+
T Consensus 80 VltLiPQCp 88 (140)
T PF10952_consen 80 VLTLIPQCP 88 (140)
T ss_pred HHHhccCCC
Confidence 566666544
No 234
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=93.68 E-value=0.16 Score=49.59 Aligned_cols=82 Identities=15% Similarity=0.002 Sum_probs=66.3
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
..+.+--+|-.+...|+-++|..+-..++. .+.....||-=+|+.+-.-++|++||+++..|
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLR------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhc------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 444556677777777777888777777777 45556778999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhhh
Q 021445 291 MRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~~ 310 (312)
|.++|+|...|+..+.....
T Consensus 102 l~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 102 LKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred HhcCCCcHHHHHHHHHHHHH
Confidence 99999999999887765444
No 235
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.65 E-value=0.28 Score=44.25 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=16.5
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg 305 (312)
..|+-+|..++.-.+.+.|+....+|++-||+++.|=.-.|
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 33444444444444444444444444444444443333333
No 236
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.62 E-value=0.11 Score=44.52 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=54.7
Q ss_pred hhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (312)
Q Consensus 220 n~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~ 298 (312)
..+.+.+++..|.+.|.+|++ +-|....-|..++....|-|+++.|...+.++|++||.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~------------------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALE------------------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhh------------------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 356788999999999999999 6677788899999999999999999999999999999754
No 237
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=93.62 E-value=0.39 Score=33.83 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=32.4
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhc
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~ 245 (312)
++.+..+..+|...=..|+|++|+..|.+|++.|...
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999987664
No 238
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.60 E-value=0.13 Score=29.67 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=26.2
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRY 241 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~ 241 (312)
+.+...|..+.+.|++++|+..|++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45778899999999999999999999993
No 239
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.57 E-value=0.6 Score=42.22 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=18.2
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~ 240 (312)
....+.+.|..++..|-|+.|-..|..-++
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~d 135 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVD 135 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 344456667777777777766666654443
No 240
>PRK10941 hypothetical protein; Provisional
Probab=93.46 E-value=0.32 Score=43.28 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=47.7
Q ss_pred HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
.......+.|+=.+|++.++|+.|+.+++.+|.++|+++--+--||.+|..|.
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~ 229 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLD 229 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44566788999999999999999999999999999999988888999998874
No 241
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.39 E-value=0.29 Score=44.80 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=52.3
Q ss_pred hhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q 021445 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299 (312)
Q Consensus 220 n~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~K 299 (312)
..+..+.+|..|+...+-.+. .++|++ ..+-+=+|.|++.||+|++|+..++.+.+.+..+.+
T Consensus 30 edfls~rDytGAislLefk~~----------~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e 92 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLN----------LDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE 92 (557)
T ss_pred HHHHhcccchhHHHHHHHhhc----------cchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc
Confidence 455666788888776655553 222222 223334788999999999999999999988877888
Q ss_pred HHHHHHHHhhh
Q 021445 300 ALFRQGQVSII 310 (312)
Q Consensus 300 a~~rrg~a~~~ 310 (312)
.+...|.|+.-
T Consensus 93 l~vnLAcc~Fy 103 (557)
T KOG3785|consen 93 LGVNLACCKFY 103 (557)
T ss_pred cchhHHHHHHH
Confidence 88887777654
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=93.33 E-value=0.25 Score=46.79 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=46.8
Q ss_pred HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~ 309 (312)
+++....++.-+|.++.-.++++.|+..+++|+.++|+.+.+||.+|..+.
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 677788899999999999999999999999999999999999999998654
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.30 E-value=0.74 Score=41.15 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=70.3
Q ss_pred CChhhhhhhhhhhHhhhhhHHhhh-cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445 203 NELSWWMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (312)
Q Consensus 203 ~~~~~~~~~~~~~k~~Gn~~~~~~-~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~ 281 (312)
.++......+..+.+-|..+++++ +|++|+...++|+++++... ..........+++..++.-++.+|+..+.++
T Consensus 26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~----~~~~~~~~~~elr~~iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG----KMDKLSPDGSELRLSILRLLANAYLEWDTYE 101 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh----hccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence 345556678889999999999999 99999999999999986631 1112233366788999999999999999876
Q ss_pred HHHHHHHHHHHc----CCCchHHHHHH
Q 021445 282 GALLDTEFAMRD----GDDNVKALFRQ 304 (312)
Q Consensus 282 ~Ai~~~~~al~l----~p~~~Ka~~rr 304 (312)
...+ |..+++. -|+.+-.++-+
T Consensus 102 ~~~k-a~~~l~~l~~e~~~~~~~~~L~ 127 (278)
T PF08631_consen 102 SVEK-ALNALRLLESEYGNKPEVFLLK 127 (278)
T ss_pred HHHH-HHHHHHHHHHhCCCCcHHHHHH
Confidence 5544 5555533 25544444333
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.29 E-value=0.18 Score=40.14 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=57.1
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC---------------
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--------------- 279 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~--------------- 279 (312)
....|-.+|++++|.+|+..|.+-|++-.. .|.-.-++.-+|++++++..
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~---------------hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~ 114 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---------------HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTP 114 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHH
Confidence 467899999999999999999999994211 12223477889999999887
Q ss_pred HHHHHHHHHHHHHcCCCchH
Q 021445 280 LKGALLDTEFAMRDGDDNVK 299 (312)
Q Consensus 280 ~~~Ai~~~~~al~l~p~~~K 299 (312)
..+|+.++.++++.-|++.-
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 89999999999999998763
No 245
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=93.21 E-value=0.42 Score=33.54 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=31.6
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~ 246 (312)
++.+..+..+|...=+.|+|++|+..|..|++.|....
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34566677788888889999999999999999887643
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=93.09 E-value=0.25 Score=46.74 Aligned_cols=71 Identities=8% Similarity=0.043 Sum_probs=59.3
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
--.|..+.-.++++.|+..+.+|+. ++|..+.+|.-+|..+.--|+.++|++..++|++++|
T Consensus 342 ~~~g~~~~~~~~~~~a~~~f~rA~~------------------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 342 AIMGLITGLSGQAKVSHILFEQAKI------------------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhh------------------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 3445555566678888888888888 7888999999999999999999999999999999999
Q ss_pred CchHHHHHH
Q 021445 296 DNVKALFRQ 304 (312)
Q Consensus 296 ~~~Ka~~rr 304 (312)
...+|-.-+
T Consensus 404 ~~~~~~~~~ 412 (458)
T PRK11906 404 RRRKAVVIK 412 (458)
T ss_pred hhhHHHHHH
Confidence 887765444
No 247
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.05 E-value=0.42 Score=39.92 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=54.3
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
+.....||.+...|+|.+|...|.+++.=+ -.....+++.+|.+.+.++++.+|....+++.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~-----------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGI-----------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccc-----------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 334678999999999999999999999731 122355778899999999999999999999888
Q ss_pred cCCC
Q 021445 293 DGDD 296 (312)
Q Consensus 293 l~p~ 296 (312)
.+|.
T Consensus 153 ~~pa 156 (251)
T COG4700 153 YNPA 156 (251)
T ss_pred cCCc
Confidence 8763
No 248
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=0.53 Score=45.69 Aligned_cols=42 Identities=24% Similarity=0.161 Sum_probs=31.0
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 268 ~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
.-.|.|++++++.++|+.+.+ .+++...+.+.-+|+.++.|+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~ 124 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLE 124 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHh
Confidence 567788888888888888777 556666777777777776653
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.80 E-value=0.49 Score=41.65 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=62.5
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
...=.|..+|.+|+|.+|...|..+++-.... +.-...++-+|.|..++++-++|...+.++++-
T Consensus 180 A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 180 AYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34557888999999999999999999833221 223457889999999999999999999999999
Q ss_pred CCCchHHHHHHH
Q 021445 294 GDDNVKALFRQG 305 (312)
Q Consensus 294 ~p~~~Ka~~rrg 305 (312)
-|....|-.-+.
T Consensus 245 YP~t~aA~~Ak~ 256 (262)
T COG1729 245 YPGTDAAKLAKV 256 (262)
T ss_pred CCCCHHHHHHHH
Confidence 999887765543
No 250
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=92.76 E-value=0.53 Score=46.96 Aligned_cols=81 Identities=11% Similarity=0.004 Sum_probs=67.4
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
..|...+..+.+.+.-++|..|..+|-. +.++.+..|.-+|.++...+++.+|.+.+..|+.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASK------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 3344555555666666777777777777 6788899999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHhhhh
Q 021445 293 DGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 293 l~p~~~Ka~~rrg~a~~~L 311 (312)
+||+++.+..-.|.+|..+
T Consensus 713 ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLEL 731 (799)
T ss_pred cCCCCcHHHHHHHHHHHHh
Confidence 9999999999999888653
No 251
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=92.67 E-value=0.63 Score=32.80 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=30.9
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~ 244 (312)
++.+..+..+|...=..|+|++|++.|..||++|..
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 346667788888888999999999999999998765
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.63 E-value=0.87 Score=36.92 Aligned_cols=75 Identities=27% Similarity=0.278 Sum_probs=47.8
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHH-HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
..+..+...++++.|+..+.+++.. .+. ....+.+++.++...+++.+|+.....++...|
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKL------------------NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhh------------------CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 3333355555666666666666652 222 355677777777777788888888888887777
Q ss_pred CchHHHHHHHHHhh
Q 021445 296 DNVKALFRQGQVSI 309 (312)
Q Consensus 296 ~~~Ka~~rrg~a~~ 309 (312)
.....++..+..+.
T Consensus 234 ~~~~~~~~~~~~~~ 247 (291)
T COG0457 234 DNAEALYNLALLLL 247 (291)
T ss_pred ccHHHHhhHHHHHH
Confidence 76666666655554
No 253
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=92.60 E-value=0.82 Score=32.16 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=31.7
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~ 246 (312)
++.|..+..+|..+=+.|+|++|+.+|.+|++.|....
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34566777888888889999999999999999887643
No 254
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=0.34 Score=45.15 Aligned_cols=81 Identities=10% Similarity=0.023 Sum_probs=66.1
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..|.-.|..+|.+++|..|+..-.|+|+ +++..+..|.=.+..++.++++++|+..+..|
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~------------------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCID------------------SEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhc------------------cCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 345566777888888899999988889988 66777888888999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHhh
Q 021445 291 MRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 291 l~l~p~~~Ka~~rrg~a~~ 309 (312)
..+.|.....|--.-.+|+
T Consensus 361 q~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred HhcchhhHHHHHHHHHHHH
Confidence 9999987776654444443
No 255
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.93 E-value=0.5 Score=46.18 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=40.6
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
..+|.-+|..++..|++++|...+++|+.++| ++.+|..+|+++..
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~ 465 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL 465 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 35677788889999999999999999999999 57899999998764
No 256
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.74 E-value=0.29 Score=29.61 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=26.9
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
.+|.-+|.+.+..++|.+|++|+.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999875
No 257
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=91.69 E-value=0.81 Score=36.60 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=56.1
Q ss_pred eEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCC--eEEeCCCCCCCCCCCCcccCCCCCCCc
Q 021445 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGF--MIQGGDISAGDGTGGESIYGLKFEDEN 95 (312)
Q Consensus 18 G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~ 95 (312)
-.++.+|..|.||+||+.|.+.-= |.+..+|-...+. ++.-+++.. .....||
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~LP--------------~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN 62 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEALP--------------LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGREN 62 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-S
T ss_pred eEEEEEEcccCChHHHHHHHHhCC--------------CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCc
Confidence 468999999999999999999851 6667777666553 555555320 0122344
Q ss_pred ccccCCCcceEEee---cCCCC--CC-CceEEEecCCCC-CCCCC-----CceEEEEEeChHHHHHHhc
Q 021445 96 FELKHERKGMLSMA---NAGPN--TN-GSQFFITTTRTS-HLDGK-----HVVFGRVIKGMGVVRSIEH 152 (312)
Q Consensus 96 ~~~~~~~~G~l~~~---~~~~~--~~-~sqF~I~~~~~~-~ld~~-----~~vfG~V~~G~~vl~~i~~ 152 (312)
...+-.+|-|.+. ..... .. -+..-|..+... .+.++ -.+|++|++|++-+.++-+
T Consensus 63 -~T~~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 63 -HTVTPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACR 130 (147)
T ss_dssp -EESS--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHH
T ss_pred -CcccCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHH
Confidence 2334456877766 11111 11 134444443322 12111 3689999999997766543
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.54 E-value=1.5 Score=40.10 Aligned_cols=97 Identities=15% Similarity=0.067 Sum_probs=66.6
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHH-Hhhhcccc--------------CCCC-chhhhHHHHHHHHHHhHHHHHHHHc-
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEK--------------EGID-EGKSSSLRKTKSQIFTNSSACKLKL- 277 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~-~l~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~N~a~~~~kl- 277 (312)
..+.++.+...|+-.+|+......+. .+...... .... .............+++-+|.-...+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~ 266 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY 266 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence 45666667777777888888777776 33321000 0000 0012223455667788788877778
Q ss_pred -----CCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 278 -----GDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 278 -----~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+.+++++..+.+|++++|++.|+|+..|..+..+
T Consensus 267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999887654
No 259
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.11 E-value=0.39 Score=49.31 Aligned_cols=76 Identities=13% Similarity=0.040 Sum_probs=68.0
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
|..+|-.+.+.+++..|+..++-|++ .+|....++.-++.+|..-|+|..|++.+++|..++
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR------------------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALR------------------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhc------------------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 45588888899999999999999999 678888999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHh
Q 021445 295 DDNVKALFRQGQVS 308 (312)
Q Consensus 295 p~~~Ka~~rrg~a~ 308 (312)
|.+.-+-|..|...
T Consensus 627 P~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVME 640 (1238)
T ss_pred cHhHHHHHHHHHHH
Confidence 99888888776543
No 260
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.90 E-value=0.41 Score=28.71 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=26.8
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~ 244 (312)
+..+.+.|..++..|+|++|...|.+++.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 456778999999999999999999999996543
No 261
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=0.89 Score=40.60 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=46.5
Q ss_pred HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
.+|....-|.=+|.+|+.++++..|+..+.+|+++.|+|+..+.-.|.+++.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~ 202 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY 202 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4566667788899999999999999999999999999999999988888864
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.81 E-value=1.3 Score=35.86 Aligned_cols=75 Identities=29% Similarity=0.305 Sum_probs=50.1
Q ss_pred hHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC-chH
Q 021445 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-NVK 299 (312)
Q Consensus 221 ~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~-~~K 299 (312)
.++..++++.|+..|.+++. +... .......+.+++..+...+++++|+....+++...+. ...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 203 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPE--------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCC--------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchH
Confidence 56677777777777777755 2110 0123444555555577788888888888888888887 577
Q ss_pred HHHHHHHHhhh
Q 021445 300 ALFRQGQVSII 310 (312)
Q Consensus 300 a~~rrg~a~~~ 310 (312)
++...+.++..
T Consensus 204 ~~~~~~~~~~~ 214 (291)
T COG0457 204 ALLNLGLLYLK 214 (291)
T ss_pred HHHHhhHHHHH
Confidence 77777766653
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.77 E-value=0.2 Score=42.75 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=61.9
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+..+.=.|--+...|+|+.|.+.|.-.++ ++|..--+++||+..++--|+|.-|.++..+-
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E------------------LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE------------------LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhc------------------cCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 344566678888899999999999999999 77888889999999999999999999999999
Q ss_pred HHcCCCch
Q 021445 291 MRDGDDNV 298 (312)
Q Consensus 291 l~l~p~~~ 298 (312)
-+-||+++
T Consensus 160 YQ~D~~DP 167 (297)
T COG4785 160 YQDDPNDP 167 (297)
T ss_pred HhcCCCCh
Confidence 88888766
No 264
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=90.45 E-value=0.82 Score=43.11 Aligned_cols=95 Identities=9% Similarity=0.006 Sum_probs=67.1
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc-------cCCCCchh-------hhHHHHHHHHHHhHHHHHHHHcCC
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-------KEGIDEGK-------SSSLRKTKSQIFTNSSACKLKLGD 279 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~N~a~~~~kl~~ 279 (312)
....-+..+...|+.++|.....++++. ...+. -...+.++ ..+..|....++.-+|..+++.++
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 3445688888999999999999998872 21110 00111111 223456667789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 280 LKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 280 ~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
|.+|.+.+.++++++|++.- +...+.++.+
T Consensus 344 ~~~A~~~le~al~~~P~~~~-~~~La~~~~~ 373 (398)
T PRK10747 344 WQEASLAFRAALKQRPDAYD-YAWLADALDR 373 (398)
T ss_pred HHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH
Confidence 99999999999999998654 4556666654
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.38 E-value=1.8 Score=39.91 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=70.7
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc--------cCCCCch----h-------------hhHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE--------KEGIDEG----K-------------SSSLRKTKSQ 265 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~--------~~~~~~~----~-------------~~~~~~~~~~ 265 (312)
.+.+..+.|.++|...++++|+..+++.|..++.... ..-..+. + ...-......
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999999999987654211 0000000 0 0112344566
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch-----HHHHHHHHHhhhh
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV-----KALFRQGQVSIIL 311 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~-----Ka~~rrg~a~~~L 311 (312)
+|.|++..+-++.+|.+++.+|...+.+....+ .++.-.|.|+..|
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl 135 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL 135 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH
Confidence 899999999999999999999999998765544 4555666666554
No 266
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.28 E-value=1.4 Score=38.58 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=53.5
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
.+.|..+|+.|+|++|+..|+.+...... ..-..+...++..+..|+.++++.+..+..|-+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~------------egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRR------------EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHh------------CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 58899999999999999999999765432 113466777899999999999999999999887763
No 267
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.15 E-value=1.9 Score=37.76 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=53.3
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC---------------
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--------------- 279 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~--------------- 279 (312)
....|..+|+.++|.+|+..|++.++.-.. .|....++.-+|.|+..+++
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD 136 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPT---------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRD 136 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccC
Confidence 567889999999999999999999994322 12234577788888766641
Q ss_pred ---HHHHHHHHHHHHHcCCCch
Q 021445 280 ---LKGALLDTEFAMRDGDDNV 298 (312)
Q Consensus 280 ---~~~Ai~~~~~al~l~p~~~ 298 (312)
-.+|+..+.+.++.-|+..
T Consensus 137 ~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 137 PQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHHHHHHHHHHHHHCcCCh
Confidence 2579999999999999765
No 268
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.08 E-value=0.46 Score=25.62 Aligned_cols=27 Identities=41% Similarity=0.541 Sum_probs=24.5
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALR 240 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~ 240 (312)
.+...|..++..++++.|+..|+++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456789999999999999999999997
No 269
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=89.86 E-value=1.2 Score=37.71 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=53.4
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-----------CH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----------DL 280 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-----------~~ 280 (312)
.+.+...|..+|+.++|.+|+..|++-++.... .+....++.-+|.|++++. ..
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---------------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~ 106 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---------------SPKADYALYMLGLSYYKQIPGILRSDRDQTST 106 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CcchhhHHHHHHHHHHHhCccchhcccChHHH
Confidence 344678899999999999999999999985322 1233446777888877753 34
Q ss_pred HHHHHHHHHHHHcCCCchH
Q 021445 281 KGALLDTEFAMRDGDDNVK 299 (312)
Q Consensus 281 ~~Ai~~~~~al~l~p~~~K 299 (312)
.+|+..+...++.-|++.-
T Consensus 107 ~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 107 RKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTT
T ss_pred HHHHHHHHHHHHHCcCchH
Confidence 5899999999999998663
No 270
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=89.72 E-value=1.8 Score=40.92 Aligned_cols=82 Identities=11% Similarity=-0.023 Sum_probs=62.7
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~ 288 (312)
.+++.....+|-..+.+|+|+.|.+...++.+. .|.....+.-.|.+..++|+++.|.+...
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~------------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~ 142 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH------------------AAEPVLNLIKAAEAAQQRGDEARANQHLE 142 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345667778899999999999999999988873 22234456678899999999999999999
Q ss_pred HHHHcCCCchH-HHHHHHHHh
Q 021445 289 FAMRDGDDNVK-ALFRQGQVS 308 (312)
Q Consensus 289 ~al~l~p~~~K-a~~rrg~a~ 308 (312)
++++..|.+.- +...+++.+
T Consensus 143 ~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 143 EAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHhCCcCchHHHHHHHHHH
Confidence 99999887753 333234443
No 271
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.58 E-value=2.5 Score=36.26 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=55.5
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
.+..++......-++.|++.|.+|++. +....+. ++ ...+..=+|..+.++|++++|+..+.+++...
T Consensus 128 yR~~~~~~~E~~fl~~Al~~y~~a~~~-------e~~~~~~---~~--~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 128 YRDLGDEENEKRFLRKALEFYEEAYEN-------EDFPIEG---MD--EATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHh-------CcCCCCC---ch--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 356666666666678888889888873 2211111 11 22355568999999999999999999999775
Q ss_pred CCch-HHHHHHHHHh
Q 021445 295 DDNV-KALFRQGQVS 308 (312)
Q Consensus 295 p~~~-Ka~~rrg~a~ 308 (312)
..+. ..+..+|+-+
T Consensus 196 ~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 196 KASKEPKLKDMARDQ 210 (214)
T ss_pred CCCCcHHHHHHHHHH
Confidence 3333 3666666644
No 272
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.56 E-value=1.5 Score=35.07 Aligned_cols=47 Identities=17% Similarity=0.045 Sum_probs=40.0
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
.....+|...+.-|+|.-|++.++.++..+|+|..|..-++.||..|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999775
No 273
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=89.19 E-value=0.56 Score=42.27 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=52.9
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCH-HHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-KGALLDTEFA 290 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~-~~Ai~~~~~a 290 (312)
...+...+......|+|++|.....+|+. .++....++.|+..|...+|+. +.+-+...+.
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~------------------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALE------------------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCC------------------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 34467789999999999999999999887 3445566899999999999998 4555666666
Q ss_pred HHcCCCch
Q 021445 291 MRDGDDNV 298 (312)
Q Consensus 291 l~l~p~~~ 298 (312)
-..+|+++
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 67888766
No 274
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=88.92 E-value=1.3 Score=41.80 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=54.1
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc----------------------------ccCCCCc---hh--
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW----------------------------EKEGIDE---GK-- 255 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~----------------------------~~~~~~~---~~-- 255 (312)
+.......+.|-++|+.|+|.+|+..|+..|..+-... ....... ++
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence 33444455679999999999999999999886541110 0111111 11
Q ss_pred ----------hhHHHHHHHHHHhHHHH-HHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445 256 ----------SSSLRKTKSQIFTNSSA-CKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (312)
Q Consensus 256 ----------~~~~~~~~~~~~~N~a~-~~~kl~~~~~Ai~~~~~al~l~p~~~Ka 300 (312)
...+.+....+-++.|. ..+|+++|.-|...|.+.|++.|....+
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 01234444444333333 3467899999999999999999876543
No 275
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.70 E-value=3.1 Score=36.14 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=51.7
Q ss_pred hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC------chH
Q 021445 226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD------NVK 299 (312)
Q Consensus 226 ~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~------~~K 299 (312)
.+++.||.+|++|-++.... +....-..|++..|.---.+++|.+||.-++++....-+ .+|
T Consensus 128 ~d~ekaI~~YE~Aae~yk~e------------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGE------------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred HHHHHHHHHHHHHHHHHcch------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 57899999999999876541 133444557777777777899999999999999854332 456
Q ss_pred HHHHH-HHHhhh
Q 021445 300 ALFRQ-GQVSII 310 (312)
Q Consensus 300 a~~rr-g~a~~~ 310 (312)
.|+-+ |.||+.
T Consensus 196 dyflkAgLChl~ 207 (288)
T KOG1586|consen 196 DYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHhHh
Confidence 66655 666653
No 276
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.43 E-value=0.79 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=24.3
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALR 240 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~ 240 (312)
.+...|..+++.|++++|+..|++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 466789999999999999999999987
No 277
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.04 E-value=1.7 Score=38.37 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=40.3
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~ 309 (312)
..+++-.|.|++.+++|++|......||..+++++.++-+.-.+-.
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL 252 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999887755433
No 278
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.79 E-value=2.3 Score=37.62 Aligned_cols=50 Identities=18% Similarity=0.042 Sum_probs=44.7
Q ss_pred HHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 262 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
....++.|.+..|+-.++|.+|...++++++.||.++.|--.+|.|++-|
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence 45668899999999999999999999999999999999999988887654
No 279
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=87.34 E-value=4.6 Score=28.77 Aligned_cols=69 Identities=20% Similarity=0.097 Sum_probs=46.8
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---cCCCCchhhhHHHHHHHHHHhHHHHHHHHcC
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---KEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~ 278 (312)
+.|-...++|-.+=..|+.++|+..|++|++.|..-.. ......+++..........-.|+..+..+|+
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL~ 77 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRLQ 77 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555666777777779999999999999998866432 1233445555566666666677776666553
No 280
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.22 E-value=0.96 Score=24.55 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTE 288 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~ 288 (312)
++.++|..+..+|++++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 67899999999999999998765
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.76 E-value=3.7 Score=39.42 Aligned_cols=85 Identities=14% Similarity=0.005 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhhhccccC----CCCchhhh---HHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ch
Q 021445 228 YKMALRKYRKALRYLDICWEKE----GIDEGKSS---SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--NV 298 (312)
Q Consensus 228 y~~A~~~Y~kal~~l~~~~~~~----~~~~~~~~---~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~--~~ 298 (312)
..+|.+.|++|++.-+...... ........ .......-+-..+|.|.-|+|+.++|++.+...++..|. +.
T Consensus 216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l 295 (539)
T PF04184_consen 216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNL 295 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchh
Confidence 6788888999888654432111 11111000 011223445677999999999999999999999988775 55
Q ss_pred HHHHHHHHHhhhhC
Q 021445 299 KALFRQGQVSIILL 312 (312)
Q Consensus 299 Ka~~rrg~a~~~L~ 312 (312)
-..+....+|+.++
T Consensus 296 ~IrenLie~LLelq 309 (539)
T PF04184_consen 296 NIRENLIEALLELQ 309 (539)
T ss_pred hHHHHHHHHHHhcC
Confidence 67777777777654
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.49 E-value=1.1 Score=41.28 Aligned_cols=84 Identities=21% Similarity=0.199 Sum_probs=62.6
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
....|++....+.|++|++.|++|+++.... + -.-+...++..++.-+-+++++++|+-...+|+++-
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~------~------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNN------D------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc------C------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 4458999999999999999999999975431 0 112335688999999999999999999999998664
Q ss_pred CC----c------hHHHHHHHHHhhh
Q 021445 295 DD----N------VKALFRQGQVSII 310 (312)
Q Consensus 295 p~----~------~Ka~~rrg~a~~~ 310 (312)
.. + .-++|+.+.||..
T Consensus 193 ~s~~l~d~~~kyr~~~lyhmaValR~ 218 (518)
T KOG1941|consen 193 NSYGLKDWSLKYRAMSLYHMAVALRL 218 (518)
T ss_pred HhcCcCchhHHHHHHHHHHHHHHHHH
Confidence 32 1 2355666666543
No 283
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.32 E-value=1.4 Score=27.52 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=24.2
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 268 TNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 268 ~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
+++|.+|+++|+++.|.+-.++++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 68999999999999999999999953
No 284
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.18 E-value=3.2 Score=37.21 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=44.6
Q ss_pred chhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445 253 EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 253 ~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~ 309 (312)
+++...+..+.+.++.-.|..|++.|.|.+|++.|.++|.+||-+...+.-.-+.|.
T Consensus 268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la 324 (361)
T COG3947 268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLA 324 (361)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 334455777788888888999999999999999999999999977665555444443
No 285
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.83 E-value=1.7 Score=26.24 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=24.7
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhh
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~ 243 (312)
.+-..|......++|.+|+..|++||++..
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345567788889999999999999999643
No 286
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.54 E-value=4.9 Score=41.15 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=59.6
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc----------------------------c---CCCCchhhh
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------------------------K---EGIDEGKSS 257 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~----------------------------~---~~~~~~~~~ 257 (312)
+....+..++|-++.+.|+|.+|+++|..+|-.+....- . .+.+-+...
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 455666789999999999999999999888743311100 0 111111111
Q ss_pred ---------HHHHHHHH-HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445 258 ---------SLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (312)
Q Consensus 258 ---------~~~~~~~~-~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka 300 (312)
.+.|.... ++.---..++|+++|+.|-..|.+.|++-|.-..|
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 12233222 23333357889999999999999999999865544
No 287
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.33 E-value=3 Score=36.87 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=44.6
Q ss_pred HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
.......+..|+=..++..++++.|+.+.++.|.++|.++-.+--||.+|..|+
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~ 229 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLG 229 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC
Confidence 445566778888888888999999999999999999999888888888887763
No 288
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.28 E-value=3.2 Score=24.67 Aligned_cols=31 Identities=13% Similarity=-0.013 Sum_probs=24.4
Q ss_pred HhHHHHHHHHcCCHHHHHHHHH--HHHHcCCCc
Q 021445 267 FTNSSACKLKLGDLKGALLDTE--FAMRDGDDN 297 (312)
Q Consensus 267 ~~N~a~~~~kl~~~~~Ai~~~~--~al~l~p~~ 297 (312)
+.-+|.++..+|+|++|+..+. -+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567999999999999999944 888888764
No 289
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=85.13 E-value=3.2 Score=36.18 Aligned_cols=55 Identities=20% Similarity=0.120 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH-cCCHHHHHHHHHHHH
Q 021445 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (312)
Q Consensus 227 ~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k-l~~~~~Ai~~~~~al 291 (312)
--+.|...|++|+++.... .....|....+.+|.|..|+. +++.++|++.+.+|+
T Consensus 141 ~~~~a~~aY~~A~~~a~~~----------L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKE----------LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhcc----------cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3488999999999986552 112568899999999998866 899999999999998
No 290
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.12 E-value=3 Score=31.69 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=49.6
Q ss_pred hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-----------CHHHHHHH
Q 021445 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----------DLKGALLD 286 (312)
Q Consensus 218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-----------~~~~Ai~~ 286 (312)
++..+|++|++-+|++.-+..+.. ...+... ..++.--+..+.++. -...|+++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~-------h~~~~~~--------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~ 66 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR-------HGEDESS--------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVEC 66 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH-------ccCCCch--------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHH
Confidence 567889999999888888887762 1111110 122333333333332 24679999
Q ss_pred HHHHHHcCCCchHHHHHHHHH
Q 021445 287 TEFAMRDGDDNVKALFRQGQV 307 (312)
Q Consensus 287 ~~~al~l~p~~~Ka~~rrg~a 307 (312)
+.++..+.|..+..+|..|.=
T Consensus 67 ~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 67 FSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HHHHhccChhHHHHHHHHHHH
Confidence 999999999999888888764
No 291
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.54 E-value=0.43 Score=43.37 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=59.0
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.+.....++..+.+.++...|++.|..||+ +++....-|--|+.++--|++|.+|-.+...|
T Consensus 147 ~a~l~~kr~sv~lkl~kp~~airD~d~A~e------------------in~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a 208 (377)
T KOG1308|consen 147 LAILYAKRASVFLKLKKPNAAIRDCDFAIE------------------INPDSAKGYKFRGYAERLLGNWEEAAHDLALA 208 (377)
T ss_pred hhhhcccccceeeeccCCchhhhhhhhhhc------------------cCcccccccchhhHHHHHhhchHHHHHHHHHH
Confidence 455567899999999999999999999999 66777777888888999999999999999999
Q ss_pred HHcCC
Q 021445 291 MRDGD 295 (312)
Q Consensus 291 l~l~p 295 (312)
+++|=
T Consensus 209 ~kld~ 213 (377)
T KOG1308|consen 209 CKLDY 213 (377)
T ss_pred Hhccc
Confidence 98873
No 292
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.75 E-value=3.2 Score=36.15 Aligned_cols=63 Identities=14% Similarity=0.006 Sum_probs=56.3
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
.-+.+++-.+++.++|+.+...-.+|++ +.+.....+.=++++.+..+.|.+||....+|..
T Consensus 45 ~Y~tnralchlk~~~~~~v~~dcrralq------------------l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 45 SYYTNRALCHLKLKHWEPVEEDCRRALQ------------------LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred hhhhhHHHHHHHhhhhhhhhhhHHHHHh------------------cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3467888889999999999999999999 7788889999999999999999999999999964
Q ss_pred c
Q 021445 293 D 293 (312)
Q Consensus 293 l 293 (312)
+
T Consensus 107 l 107 (284)
T KOG4642|consen 107 L 107 (284)
T ss_pred H
Confidence 3
No 293
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.50 E-value=3.4 Score=30.19 Aligned_cols=40 Identities=18% Similarity=0.037 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~ 298 (312)
.+|....+...+|.+++..|++++|++.+-.+++.++.+-
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 5677778899999999999999999999999999988763
No 294
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=83.33 E-value=4.2 Score=40.42 Aligned_cols=97 Identities=19% Similarity=0.144 Sum_probs=59.7
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc------cCCCCchhhhHHHHHHH---------HHHhHHHHHHHHcCC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWE------KEGIDEGKSSSLRKTKS---------QIFTNSSACKLKLGD 279 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~------~~~~~~~~~~~~~~~~~---------~~~~N~a~~~~kl~~ 279 (312)
|.--+...++.|+...|.....+|++....... .-.....+......++. .+|..-+...--+++
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 345556666778888888777777764211100 00000000011122221 244444555555889
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 280 LKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 280 ~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
.++|++.|+++|+.-|.+.|.|.-+|+.+..+
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH
Confidence 99999999999999999999999999998764
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.17 E-value=10 Score=33.80 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=50.1
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-CHHHHHHHHHHHHHc
Q 021445 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRD 293 (312)
Q Consensus 222 ~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~l 293 (312)
..++|+++.|...|.|+=...... .+......+..++|.|...++.+ +|++|+....+|+++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~----------~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL----------DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC----------CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 457899999999999998765211 12245677889999999999999 999999999988866
No 296
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=82.49 E-value=3.5 Score=36.46 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=59.4
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
...=+.+..+++++.|..+-.+.|. +.|....-..-||.+|.+++.+.-|++|....++.-|
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~------------------l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLD------------------LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHh------------------hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 3444567788899999998888888 4444555566799999999999999999999999989
Q ss_pred CchHHHHHHHHH
Q 021445 296 DNVKALFRQGQV 307 (312)
Q Consensus 296 ~~~Ka~~rrg~a 307 (312)
+..-|-.-|++.
T Consensus 247 ~~~~a~~ir~~l 258 (269)
T COG2912 247 DDPIAEMIRAQL 258 (269)
T ss_pred CchHHHHHHHHH
Confidence 888877766654
No 297
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.59 E-value=6.8 Score=40.88 Aligned_cols=69 Identities=7% Similarity=-0.114 Sum_probs=55.1
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+...|..+...|++.+|...|++++....... .......++..+|.++.++|++++|.....+|+++-
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g------------~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLR------------LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45677788899999999999999998643210 122455678889999999999999999999999776
Q ss_pred C
Q 021445 295 D 295 (312)
Q Consensus 295 p 295 (312)
.
T Consensus 762 ~ 762 (903)
T PRK04841 762 N 762 (903)
T ss_pred C
Confidence 4
No 298
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.17 E-value=7.7 Score=34.68 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 257 SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 257 ~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
..+.+.++.++.-++..+...++++.+++..++.+.++|.+.++|.+.-.+|+.
T Consensus 146 ~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~ 199 (280)
T COG3629 146 RALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV 199 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999999999998888764
No 299
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.64 E-value=10 Score=35.52 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=61.1
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+.+.|.-+..-|+++.|+++|.++-.++.. ..-.+..+.|.-.+-+-+++|...+..-++|.+--
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTS---------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcc---------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence 456788888899999999999998888754 23446678999999999999999998888887651
Q ss_pred --------CCchHHHHHHHHHhhhh
Q 021445 295 --------DDNVKALFRQGQVSIIL 311 (312)
Q Consensus 295 --------p~~~Ka~~rrg~a~~~L 311 (312)
.-.+|...-.|.|++.|
T Consensus 218 ~~~~~~~q~v~~kl~C~agLa~L~l 242 (466)
T KOG0686|consen 218 DANENLAQEVPAKLKCAAGLANLLL 242 (466)
T ss_pred hhhhhHHHhcCcchHHHHHHHHHHH
Confidence 12334555555555443
No 300
>PRK04841 transcriptional regulator MalT; Provisional
Probab=78.98 E-value=8.3 Score=40.24 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=42.3
Q ss_pred hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.|..+...|++++|...|.+++...... . .......++.++|.+++..|++++|...+.+++.+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~-----------g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQH-----------D-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhh-----------c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444455666666666666666542210 0 01122446789999999999999999999999875
No 301
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.49 E-value=3.8 Score=40.16 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka 300 (312)
.++-++.+|+-|++.++||+.+..|+.++|++...
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence 56778889999999999999999999999988753
No 302
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=78.38 E-value=12 Score=36.06 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=44.3
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
+..+..+.+.|+.++|++.|+..++.... .....++.|+..|++.++.|.++-....+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~----------------~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPN----------------LDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCc----------------cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 45677777899999999999999873211 123458999999999999998776655553
No 303
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.36 E-value=7.6 Score=35.61 Aligned_cols=49 Identities=12% Similarity=-0.084 Sum_probs=39.4
Q ss_pred HHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 261 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~ 309 (312)
|..+-++-=.|-|+..+|-|++|.+.++++|++++.+.-|..-++-++.
T Consensus 172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle 220 (491)
T KOG2610|consen 172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLE 220 (491)
T ss_pred cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence 3445555568999999999999999999999999988777766665553
No 304
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=77.22 E-value=8.4 Score=33.75 Aligned_cols=54 Identities=15% Similarity=-0.017 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH-cCCHHHHHHHHHHHH
Q 021445 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (312)
Q Consensus 228 y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k-l~~~~~Ai~~~~~al 291 (312)
-+.|...|++|+++.... .....|....+.+|.|..|+. +++.++|++.+.+|+
T Consensus 144 ~~~a~~aY~~A~e~a~~~----------L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAE----------LPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHcc----------CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468899999999874331 122568889999999999887 589999998888887
No 305
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.98 E-value=9.7 Score=33.40 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=44.1
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
-.+++-.+.+.-+-++|++.|++++.++... .-...-..++...+..+.++++|.+|-..+.+-
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~------------dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEED------------DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc------------chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 3455666667778888999999998876431 122334557788888899999998876555443
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.31 E-value=13 Score=31.43 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=44.7
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
...+.+...+..+++++|....+.++.. ..-..+...+-.++|.+.+.++++++|+...+..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~---------------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ---------------TKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---------------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 3467778888899999999999988862 1123455566777888888888887777765543
No 307
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.28 E-value=6.3 Score=35.64 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=30.2
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~ 246 (312)
++.+-.+-.++...=+.++|.+|+..|+.||+|+....
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~l 44 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHAL 44 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHH
Confidence 44566666777777788999999999999999976543
No 308
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.36 E-value=14 Score=35.77 Aligned_cols=78 Identities=9% Similarity=-0.029 Sum_probs=64.4
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..+..++..+...|+-+.|+..++.+++ . .+++..+.++.-++.|+.-+.+|..|-.+++...
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~--~--------------~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIP--I--------------RMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhccc--H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44456777788888887888888888877 1 2778899999999999999999999999999998
Q ss_pred HcCCCchHHHHHHHH
Q 021445 292 RDGDDNVKALFRQGQ 306 (312)
Q Consensus 292 ~l~p~~~Ka~~rrg~ 306 (312)
.+. +|.+|+|..=.
T Consensus 331 des-dWS~a~Y~Yfa 344 (546)
T KOG3783|consen 331 DES-DWSHAFYTYFA 344 (546)
T ss_pred hhh-hhhHHHHHHHH
Confidence 886 78899887633
No 309
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=73.66 E-value=13 Score=37.23 Aligned_cols=70 Identities=10% Similarity=0.038 Sum_probs=45.9
Q ss_pred hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (312)
Q Consensus 219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~ 298 (312)
++-..-.++.++|++...+||+ .-|....+|+-+++.+-++++.+.|.+.+..-++.-|+..
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk------------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALK------------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHH------------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 3333344555666666666666 3456677777788888888777777777777777777666
Q ss_pred HHHHHHHH
Q 021445 299 KALFRQGQ 306 (312)
Q Consensus 299 Ka~~rrg~ 306 (312)
-.|.-.++
T Consensus 720 pLWllLak 727 (913)
T KOG0495|consen 720 PLWLLLAK 727 (913)
T ss_pred hHHHHHHH
Confidence 65554443
No 310
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=73.48 E-value=6 Score=40.15 Aligned_cols=47 Identities=9% Similarity=-0.046 Sum_probs=39.2
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
...|..+..++.+.|+++.|...++++++++|.+...|...+.+|..
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence 34688888888899999999999999999999988887777766643
No 311
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=73.31 E-value=13 Score=33.70 Aligned_cols=46 Identities=22% Similarity=0.170 Sum_probs=39.4
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~ 309 (312)
+.+-+|.|.-..+.|+-++|...+..||.++|.++.++.+.|+-..
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E 161 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE 161 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH
Confidence 3345677777888999999999999999999999999999987653
No 312
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.09 E-value=26 Score=24.61 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=25.4
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHH-------HcCCCchHHHH
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAM-------RDGDDNVKALF 302 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al-------~l~p~~~Ka~~ 302 (312)
..-|..+|.-+-+.|++.+|+.++.+++ ..-|++.+...
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 4456777777777777776666666555 66677665433
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.59 E-value=12 Score=38.30 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=28.7
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~ 244 (312)
++-.+.-|+-+|++|+|++|...|-++|.+++.
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 334688999999999999999999999987755
No 314
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=70.26 E-value=11 Score=28.72 Aligned_cols=50 Identities=8% Similarity=0.005 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 227 ~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
-...|+++|+++.. +.|..+..+.++|.=+-...-|++|+.-|.++|.+.
T Consensus 59 yLl~sve~~s~a~~------------------Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 59 YLLGSVECFSRAVE------------------LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHhHHHHHHHhc------------------cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 35778999999998 566667778888877666678999999999999764
No 315
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=69.88 E-value=21 Score=34.12 Aligned_cols=59 Identities=8% Similarity=0.058 Sum_probs=44.0
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
.....+.+.-+|.+|+|.++...-.=..+ +.| ...+|.-+|.|.+..++|++|..+...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~------------------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTK------------------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44567788889999999887653333333 445 566888899999999999999986544
No 316
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=69.45 E-value=13 Score=32.58 Aligned_cols=57 Identities=21% Similarity=0.064 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 021445 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305 (312)
Q Consensus 231 A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg 305 (312)
|..+|.+|+. +.|..-..|+.+|..+...++.-.|+-++-++|-.......|.-...
T Consensus 1 A~~~Y~~A~~------------------l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~ 57 (278)
T PF10373_consen 1 AERYYRKAIR------------------LLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQ 57 (278)
T ss_dssp HHHHHHHHHH------------------H-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHH
T ss_pred CHHHHHHHHH------------------hCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 7889999999 56667779999999999999999999999999966544455544433
No 317
>PF15469 Sec5: Exocyst complex component Sec5
Probab=68.59 E-value=14 Score=30.56 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=45.9
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHHHhhhcc----ccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALRYLDICW----EKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
..-..+.++|+|+.|+..|.+|-.++.... .......+-+..+......++..+.... ...++........++
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~---~s~~~~~~~i~~Ll~ 167 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP---SSQEEFLKLIRKLLE 167 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHh
Confidence 334455689999999999999999876531 0011111111112222222222222222 256777777888888
Q ss_pred cCCCchHHHH
Q 021445 293 DGDDNVKALF 302 (312)
Q Consensus 293 l~p~~~Ka~~ 302 (312)
|++..--+|+
T Consensus 168 L~~~~dPi~~ 177 (182)
T PF15469_consen 168 LNVEEDPIWY 177 (182)
T ss_pred CCCCCCHHHH
Confidence 8875544554
No 318
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=67.55 E-value=10 Score=36.77 Aligned_cols=39 Identities=10% Similarity=-0.136 Sum_probs=33.9
Q ss_pred HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~ 297 (312)
+++....++.-++.|+..++++.+|+++...+....|.+
T Consensus 440 ln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 440 LNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 788889999999999999999999999877777766743
No 319
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=66.86 E-value=17 Score=20.35 Aligned_cols=30 Identities=20% Similarity=0.006 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 282 GALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 282 ~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+.++.+.++|..+|.|.-||.-|-.++..+
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 357889999999999999998887766554
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.72 E-value=16 Score=36.05 Aligned_cols=81 Identities=14% Similarity=0.019 Sum_probs=50.3
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCC-CCchhhhHHH-HHHHHHHhHHH-HHHHHcCCHHHHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEG-IDEGKSSSLR-KTKSQIFTNSS-ACKLKLGDLKGALLD 286 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~N~a-~~~~kl~~~~~Ai~~ 286 (312)
+...+|++.|+.+.+.+++..|.+|+.+|-.+-...-.... .+.+-...+. .-...-.+|.| .||+.+|++++|++.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHH
Confidence 34567899999999999999999999999764222111111 1111111111 11222345555 689999999998876
Q ss_pred HHHH
Q 021445 287 TEFA 290 (312)
Q Consensus 287 ~~~a 290 (312)
...-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 5544
No 321
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.51 E-value=54 Score=26.75 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=12.9
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHH
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALR 240 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~ 240 (312)
-.|..+..+|+|.+|++.++...+
T Consensus 49 ~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 49 FDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhc
Confidence 345555556666666655555433
No 322
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.81 E-value=18 Score=34.89 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 258 ~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~ 309 (312)
.+......+|.|.|.+-+.+|++-.|+..+++.|++ |+..|+|--.|-.|.
T Consensus 503 ~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYA 553 (696)
T KOG2471|consen 503 DLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYA 553 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHH
Confidence 467788899999999999999999999999999998 577888877776654
No 323
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.41 E-value=42 Score=31.24 Aligned_cols=88 Identities=10% Similarity=-0.027 Sum_probs=57.5
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc--cc-----CC----CCchhhhHHHHHHHHHHhHHHHHHHHcCC
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW--EK-----EG----IDEGKSSSLRKTKSQIFTNSSACKLKLGD 279 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~--~~-----~~----~~~~~~~~~~~~~~~~~~N~a~~~~kl~~ 279 (312)
.+..+.+-+..+..+|+++.|.+.-++||-.++... .. .. .--+-....+...-.++........+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 355677777777888888888888888887665321 00 00 00011111122333455566778888999
Q ss_pred HHHHHHHHHHHHHcCCC-ch
Q 021445 280 LKGALLDTEFAMRDGDD-NV 298 (312)
Q Consensus 280 ~~~Ai~~~~~al~l~p~-~~ 298 (312)
|.-|++.|.-.|.+||. ++
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999998 44
No 324
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.33 E-value=12 Score=36.86 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=57.0
Q ss_pred hhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHH-HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHH
Q 021445 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS-QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (312)
Q Consensus 224 ~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~ 302 (312)
-.|+-..|+.|...|+. +.|+.. .-+.|+|...++-+-..+|-....++|.+....+-.+|
T Consensus 619 ~~gn~~~a~~cl~~a~~------------------~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~ 680 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN------------------LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFL 680 (886)
T ss_pred ecCCcHHHHHHHHHHhc------------------cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHH
Confidence 46777788999999987 223222 34789999999999999999999999999988888888
Q ss_pred HHHHHhhhh
Q 021445 303 RQGQVSIIL 311 (312)
Q Consensus 303 rrg~a~~~L 311 (312)
-.|.+++.|
T Consensus 681 ~~g~~~l~l 689 (886)
T KOG4507|consen 681 SLGNAYLAL 689 (886)
T ss_pred hcchhHHHH
Confidence 889888765
No 325
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=64.77 E-value=20 Score=33.49 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=50.0
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
...+.-.|--+++++.|.+|...++.||++ .+ ...-|.=+|-++.++|+..+|-+....+|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~------------------~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL------------------RP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc------------------CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 345677899999999999999999999983 11 23356668999999999999999998888
Q ss_pred H
Q 021445 292 R 292 (312)
Q Consensus 292 ~ 292 (312)
.
T Consensus 389 ~ 389 (400)
T COG3071 389 L 389 (400)
T ss_pred H
Confidence 4
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.61 E-value=8.3 Score=32.67 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=42.6
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai 284 (312)
.++-....|. +|-+.+-++|+..|.++|++... -......++..+|..++++++++.|-
T Consensus 140 t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~--------------~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALAT-YYTKRDPEKTIQLLLRALELSNP--------------DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3444444444 44567889999999999996543 11334568889999999999999884
No 327
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.70 E-value=16 Score=32.85 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=43.5
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHH
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~ 285 (312)
...++..+...+++.+|...+..++. ..+....+..-++.||+.+|+.+.|..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~------------------~~~~~~~~~~~la~~~l~~g~~e~A~~ 189 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQ------------------AAPENSEAKLLLAECLLAAGDVEAAQA 189 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHH------------------hCcccchHHHHHHHHHHHcCChHHHHH
Confidence 56788999999999999999999999 344456677788999999998865544
No 328
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=62.80 E-value=40 Score=27.27 Aligned_cols=72 Identities=21% Similarity=0.103 Sum_probs=47.2
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
........+|.+++.|+.+.|.+...-+-.-+... ....+ +. ...-..++|..++..|+|.+|-.....|
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~-------~~~lP-L~--~~~~av~~A~~ll~~~k~~eA~~aL~~A 143 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDIT-------TALLP-LA--QTPAAVKQAAALLDEGKYYEANAALKQA 143 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEE-------EEEEE-HH--HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceee-------eeeCC-HH--hhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56678899999999999999987654432211110 00000 11 2335678999999999999999988888
Q ss_pred HH
Q 021445 291 MR 292 (312)
Q Consensus 291 l~ 292 (312)
+.
T Consensus 144 ~~ 145 (155)
T PF10938_consen 144 LD 145 (155)
T ss_dssp HH
T ss_pred hc
Confidence 73
No 329
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.17 E-value=31 Score=34.16 Aligned_cols=62 Identities=21% Similarity=0.172 Sum_probs=42.7
Q ss_pred hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc----CCHHHHHHHHHHHHHcCCCchHHH
Q 021445 226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----GDLKGALLDTEFAMRDGDDNVKAL 301 (312)
Q Consensus 226 ~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl----~~~~~Ai~~~~~al~l~p~~~Ka~ 301 (312)
.++..|.+.|..|... -.+.+..++|.||..= .+...|...+.+|-+.. ++.|.
T Consensus 342 ~d~~~A~~yy~~Aa~~--------------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~ 399 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKA--------------------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAA 399 (552)
T ss_pred ccHHHHHHHHHHHHHc--------------------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhH
Confidence 4566666666666652 2345777888888763 47788888888888876 67777
Q ss_pred HHHHHHhh
Q 021445 302 FRQGQVSI 309 (312)
Q Consensus 302 ~rrg~a~~ 309 (312)
++++..+.
T Consensus 400 ~~~~~~~~ 407 (552)
T KOG1550|consen 400 YLLGAFYE 407 (552)
T ss_pred HHHHHHHH
Confidence 77766554
No 330
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=60.97 E-value=20 Score=36.97 Aligned_cols=73 Identities=18% Similarity=0.021 Sum_probs=48.6
Q ss_pred hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (312)
Q Consensus 218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~ 297 (312)
+|-.+++.|++++|. .--+++..+. .+ .-..+.-+..||-.++++++|...+.++++-+|.
T Consensus 49 kaLsl~r~gk~~ea~-~~Le~~~~~~-------~~----------D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~- 109 (932)
T KOG2053|consen 49 KALSLFRLGKGDEAL-KLLEALYGLK-------GT----------DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS- 109 (932)
T ss_pred HHHHHHHhcCchhHH-HHHhhhccCC-------CC----------chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-
Confidence 455566788888887 3333333211 11 1123344677999999999999999999999998
Q ss_pred hHHHHHHHHHhh
Q 021445 298 VKALFRQGQVSI 309 (312)
Q Consensus 298 ~Ka~~rrg~a~~ 309 (312)
.+-++-.-+||.
T Consensus 110 eell~~lFmayv 121 (932)
T KOG2053|consen 110 EELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHH
Confidence 666655555553
No 331
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=58.71 E-value=13 Score=39.78 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=58.8
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
..+....+.|.+...++.|.+|.+ -.+++.+++.. ...+.+....+|.-+|..+.+++++++|+..+.+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v----------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~k 998 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV----------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRK 998 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh----------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccc
Confidence 456778899999999999999988 66777665421 1225678889999999999999999999999999
Q ss_pred HHHc
Q 021445 290 AMRD 293 (312)
Q Consensus 290 al~l 293 (312)
|.-+
T Consensus 999 a~ii 1002 (1236)
T KOG1839|consen 999 ACII 1002 (1236)
T ss_pred ceee
Confidence 8733
No 332
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=56.09 E-value=82 Score=29.76 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=49.4
Q ss_pred hHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (312)
Q Consensus 221 ~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka 300 (312)
.....|+|+.|++.-......... . ....+.....++.-.+...+.- +...|..++.++++++|+.+-+
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vi-------e---~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPa 265 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVI-------E---KDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPA 265 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhh-------c---hhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchH
Confidence 445677888888777655542111 0 1113344555555555555443 5899999999999999998866
Q ss_pred HHHHHHHhh
Q 021445 301 LFRQGQVSI 309 (312)
Q Consensus 301 ~~rrg~a~~ 309 (312)
-.--+++|.
T Consensus 266 av~AAralf 274 (531)
T COG3898 266 AVVAARALF 274 (531)
T ss_pred HHHHHHHHH
Confidence 666555554
No 333
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.92 E-value=66 Score=29.90 Aligned_cols=93 Identities=11% Similarity=0.116 Sum_probs=58.1
Q ss_pred hhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHH
Q 021445 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (312)
Q Consensus 208 ~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~ 287 (312)
.-+.+..+...|+.+++.++|..|...|..|..++.... ..-.......+.-.+-+++++.++..++...
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~----------Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY----------GEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445788899999999999999999999999999764420 0011122223344566677776665544322
Q ss_pred HH----------------HH-HcCCCchHHHHHHHHHhhh
Q 021445 288 EF----------------AM-RDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 288 ~~----------------al-~l~p~~~Ka~~rrg~a~~~ 310 (312)
-. .. +++......+||-+.++..
T Consensus 107 ale~~~~eE~e~~~s~e~s~e~nn~~e~vee~r~~~a~~~ 146 (400)
T KOG4563|consen 107 ALETESAEEEEVEKSGELSDEENNNKETVEEYRYGLALLE 146 (400)
T ss_pred ccccccccchhhccccccchhhhccHHHHHHHHhhhhhhh
Confidence 22 11 2223445677777777653
No 334
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.45 E-value=23 Score=37.38 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=42.3
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
.+..-|+.+|.++.|+.|.-.|...-. |..+|.++.+||+|+.|+..+.+|-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN--------------------------~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSN--------------------------FAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhhh--------------------------HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 357788999999999888877764433 5678899999999999999998873
No 335
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.43 E-value=35 Score=22.13 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.1
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALR 240 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~ 240 (312)
+.-.+-..++.|+|.+|.+.-..+|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34556778999999999999999998
No 336
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=55.29 E-value=22 Score=19.09 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.|+.+-.+|.+.+++++|.+.+++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4677888999999999999998887653
No 337
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.74 E-value=42 Score=30.29 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=39.4
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~ 281 (312)
.+.+|.+.+.+++++|+..|.+.|.- ..+.++ +.....-...+|++..|..+|+|.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k--------g~s~de--k~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK--------GVSKDE--KTLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC--------CCChhh--hhhhHHHHHHHHHHHHHHhcCCcc
Confidence 57899999999999999999998872 011111 122233446678888999988764
No 338
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.27 E-value=34 Score=18.43 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 021445 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQV 307 (312)
Q Consensus 278 ~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a 307 (312)
++++.|...+++++...|.+...|...+.-
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467889999999999999888888776643
No 339
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=54.21 E-value=15 Score=34.74 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
..+-....+...|-||+=|++|.+|++.+..+|
T Consensus 159 V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 159 VPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred CcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567789999999999999999999999998
No 340
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=54.18 E-value=39 Score=30.10 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHc-CCHHHHHHHHHHHHHcCCCchHHHH
Q 021445 266 IFTNSSACKLKL-GDLKGALLDTEFAMRDGDDNVKALF 302 (312)
Q Consensus 266 ~~~N~a~~~~kl-~~~~~Ai~~~~~al~l~p~~~Ka~~ 302 (312)
+|...|..-++. ++.+.|...++.+|+.-|.+...|.
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 344444443332 2333355555555544444444333
No 341
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=53.82 E-value=21 Score=27.14 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=38.0
Q ss_pred CCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc
Q 021445 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (312)
Q Consensus 202 ~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~ 246 (312)
..++...+..+..+..+|..++++|+.+.|--.|.+.+.+++..+
T Consensus 28 ~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki~ 72 (115)
T PF08969_consen 28 NIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKIP 72 (115)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCHC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 456677889999999999999999999999999999999985544
No 342
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=52.94 E-value=70 Score=30.98 Aligned_cols=73 Identities=8% Similarity=0.004 Sum_probs=59.5
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
+..-|.---.+++++.|...|.+||. .+-..+.+++.-+.|-+|.+.-..|-...++|+.+=
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALd------------------vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALD------------------VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHh------------------cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 34445555567888889999999998 556678899999999999999999999999999998
Q ss_pred CCchHHHHHHH
Q 021445 295 DDNVKALFRQG 305 (312)
Q Consensus 295 p~~~Ka~~rrg 305 (312)
|.--+-||..-
T Consensus 138 PRVdqlWyKY~ 148 (677)
T KOG1915|consen 138 PRVDQLWYKYI 148 (677)
T ss_pred chHHHHHHHHH
Confidence 88778777654
No 343
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.87 E-value=1.1e+02 Score=28.75 Aligned_cols=66 Identities=23% Similarity=0.109 Sum_probs=49.8
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH--cCCHHHHHHHHHHH
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--LGDLKGALLDTEFA 290 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k--l~~~~~Ai~~~~~a 290 (312)
.....++..+|+.++|..|.+.+...+.-+.. . .. ...+.+++.+|.. .-+|++|.+..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~---------~-----~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPG---------R-----EE--YQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---------h-----hh--HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44567888999999999999999988872111 0 11 4567788888777 55899999999988
Q ss_pred HHcC
Q 021445 291 MRDG 294 (312)
Q Consensus 291 l~l~ 294 (312)
+..+
T Consensus 196 ~~~~ 199 (379)
T PF09670_consen 196 LKRD 199 (379)
T ss_pred HHHh
Confidence 8653
No 344
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=52.41 E-value=49 Score=22.40 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=17.7
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
-+.+.|.-.=+.|+|++|+..+.+++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34556666666778777777777776
No 345
>PLN03077 Protein ECB2; Provisional
Probab=52.15 E-value=43 Score=34.90 Aligned_cols=45 Identities=4% Similarity=-0.109 Sum_probs=33.8
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
+|..+-.++..-++.+.|...++++++++|+++-.|...+..|..
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 444444455567788888888889999999999888888877753
No 346
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=51.43 E-value=9 Score=35.21 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=36.7
Q ss_pred HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka 300 (312)
.++....+|.-|++.++++.++++|+++...+...+|++...
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 455667789999999999999999999999999999987643
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=51.35 E-value=1e+02 Score=32.08 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=40.6
Q ss_pred hhcHHHH------HHHHHHHHHHhhhccc------cCCCCchh-hhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 225 KQDYKMA------LRKYRKALRYLDICWE------KEGIDEGK-SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 225 ~~~y~~A------~~~Y~kal~~l~~~~~------~~~~~~~~-~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
..+|++| .+.|+.||.++..... .+...++. ..--......++-.+|.|++++|.|..|-+-+++|=
T Consensus 1093 ~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1093 NQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 4455555 4568888887754211 00001000 000123456688889999999999999988887763
No 348
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=51.24 E-value=42 Score=30.06 Aligned_cols=61 Identities=7% Similarity=0.048 Sum_probs=49.7
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
.+.+....+...++++.++...++-+. ..|..-.+|.-+-..|++.|+...|+..|.+.-+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~------------------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE------------------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345567777778888888888888877 5666677888899999999999999999998865
No 349
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.13 E-value=1.2e+02 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=18.6
Q ss_pred HHHHHHcCCHHHHHHHHHH---HH-HcCCCchHHHHHHHHHhh
Q 021445 271 SACKLKLGDLKGALLDTEF---AM-RDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 271 a~~~~kl~~~~~Ai~~~~~---al-~l~p~~~Ka~~rrg~a~~ 309 (312)
+..|..-|.++-|-...++ +| ..+|+.+--+|.||.+..
T Consensus 98 s~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV 140 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 3334445555443333333 33 234556666666665543
No 350
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.65 E-value=83 Score=27.59 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=19.8
Q ss_pred HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
....|.-.+.||-|. ++.+|+.+..+++++
T Consensus 73 aat~YveA~~cykk~-~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 73 AATTYVEAANCYKKV-DPEEAVNCLEKAIEI 102 (288)
T ss_pred HHHHHHHHHHHhhcc-ChHHHHHHHHHHHHH
Confidence 344566666666555 777788887777755
No 351
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=49.51 E-value=1e+02 Score=26.20 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHhhhh
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMR-DGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~-l~p~~~Ka~~rrg~a~~~L 311 (312)
-...+|.....+|++.+|...+.+++. +-..++.-+.-+|+|...+
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 456789999999999999999999994 3456677777888887665
No 352
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=49.01 E-value=1.4e+02 Score=29.28 Aligned_cols=89 Identities=10% Similarity=0.041 Sum_probs=59.4
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH---
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM--- 291 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al--- 291 (312)
.......+...|.-.+|+++-.-+...++..-+.. ....-+.+..+|.-.+.||...+.+.+|...+.++|
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~------t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki 227 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLL------TVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKI 227 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhh------hcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 34555556666666777776655555444321111 112457889999999999999999999999999999
Q ss_pred -------HcCC----CchHHHHHHHHHhh
Q 021445 292 -------RDGD----DNVKALFRQGQVSI 309 (312)
Q Consensus 292 -------~l~p----~~~Ka~~rrg~a~~ 309 (312)
.+++ .-.+..|+-|..-+
T Consensus 228 ~eL~qLE~ms~s~~s~es~~~f~eA~ikm 256 (542)
T PF14858_consen 228 DELRQLENMSSSPPSEESQRIFREATIKM 256 (542)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 2222 24567777766543
No 353
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=48.58 E-value=96 Score=27.97 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=47.5
Q ss_pred hhhhhHhhhhhHHhh------hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC-----
Q 021445 211 AVDSIKVFGNEHYKK------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----- 279 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~------~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~----- 279 (312)
.+..+...|+-.... +.+++++..|.+|++ +.+.....|.+.|..+.++=+
T Consensus 251 ~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~------------------~~~~~~k~~~~~a~~~~~~~~~~~~~ 312 (352)
T PF02259_consen 251 KAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK------------------LDPSWEKAWHSWALFNDKLLESDPRE 312 (352)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH------------------hChhHHHHHHHHHHHHHHHHHhhhhc
Confidence 445556666655555 889999999999998 444455566666666665421
Q ss_pred ------------HHHHHHHHHHHHHcCCC
Q 021445 280 ------------LKGALLDTEFAMRDGDD 296 (312)
Q Consensus 280 ------------~~~Ai~~~~~al~l~p~ 296 (312)
...|+..+-++|.+.+.
T Consensus 313 ~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 313 KEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 23488889999998887
No 354
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=48.52 E-value=22 Score=27.40 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=29.7
Q ss_pred CCcceEEeecCCCCCCCceEEEecCCCC-------CCCCCCceEEEEEeChHHHHHHhc
Q 021445 101 ERKGMLSMANAGPNTNGSQFFITTTRTS-------HLDGKHVVFGRVIKGMGVVRSIEH 152 (312)
Q Consensus 101 ~~~G~l~~~~~~~~~~~sqF~I~~~~~~-------~ld~~~~vfG~V~~G~~vl~~i~~ 152 (312)
...|-|+.-..+.+ |.|-.++.| .......++|+|.+|.+.+..+..
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 36788888765543 777777764 445668899999999988877754
No 355
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=48.36 E-value=44 Score=35.26 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~K 299 (312)
=|+-.|++|.++++|++-++++.-||+--|+++.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 4888999999999999999999999999888774
No 356
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=48.18 E-value=68 Score=28.23 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=39.7
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHhhh
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQVSII 310 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~---~Ka~~rrg~a~~~ 310 (312)
..-+.|-|+..++-|+|++|+..++.+....|.. .++.+-.+.|+++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk 83 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK 83 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh
Confidence 4467899999999999999999999999888754 4788888888764
No 357
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.12 E-value=1.5e+02 Score=28.96 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=37.4
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCH
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~ 280 (312)
.-.|-....-+.|+.|...|..|++..+. ..+.+-+-.|+|..|++.++-
T Consensus 371 ~LlGlys~sv~~~enAe~hf~~a~k~t~~---------------~dl~a~~nlnlAi~YL~~~~~ 420 (629)
T KOG2300|consen 371 MLLGLYSHSVNCYENAEFHFIEATKLTES---------------IDLQAFCNLNLAISYLRIGDA 420 (629)
T ss_pred HHHhhHhhhcchHHHHHHHHHHHHHhhhH---------------HHHHHHHHHhHHHHHHHhccH
Confidence 34455555677889999999999985433 345677889999999998764
No 358
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.44 E-value=58 Score=32.23 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC---CHHHHHHHHHHHHHcCCCchHHHHH
Q 021445 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDTEFAMRDGDDNVKALFR 303 (312)
Q Consensus 227 ~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~~~Ai~~~~~al~l~p~~~Ka~~r 303 (312)
++..|+..|.+|-+. ....+..+++.|++.-. ++..|.+.+..|-+. .+..|.|+
T Consensus 308 d~~~A~~~~~~aA~~--------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL--------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred cHHHHHHHHHHHHhc--------------------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 677788888877762 12346677888888765 678999999999875 68899999
Q ss_pred HHHHhhh
Q 021445 304 QGQVSII 310 (312)
Q Consensus 304 rg~a~~~ 310 (312)
.|.+|..
T Consensus 366 la~~y~~ 372 (552)
T KOG1550|consen 366 LALCYEL 372 (552)
T ss_pred HHHHHHh
Confidence 9999863
No 359
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.44 E-value=77 Score=27.65 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 229 ~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
...++..++|++.+.... ..-....+...+|.-|+++|+|++|+..++.++..
T Consensus 155 ~~iI~lL~~A~~~f~~~~------------~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYG------------QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHhc------------cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 455666666666554321 12334556778999999999999999999999743
No 360
>PLN03218 maturation of RBCL 1; Provisional
Probab=46.15 E-value=79 Score=34.04 Aligned_cols=28 Identities=14% Similarity=-0.077 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
..|..+..+|.+.|++++|++.+++..+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4566666667777777777766666643
No 361
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.14 E-value=44 Score=26.59 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=26.7
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~ 240 (312)
+--++++.+++.+++.+|+|+.|++.-..++.
T Consensus 67 ~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~ 98 (141)
T PF14863_consen 67 AGGADKVLERAQAALAAGDYQWAAELLDHLVF 98 (141)
T ss_dssp TTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567789999999999999999998888887
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.42 E-value=48 Score=29.97 Aligned_cols=56 Identities=20% Similarity=0.072 Sum_probs=44.7
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
-..+..+...|.+.+|++.-++++. ++|+....+--+-+.+..+|+--.|+.++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~lt------------------ldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALT------------------LDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhh------------------cChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3445666778999999999999998 6777777877888889999987777776654
No 363
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=45.32 E-value=42 Score=23.58 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=33.9
Q ss_pred CCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhh
Q 021445 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (312)
Q Consensus 202 ~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~ 243 (312)
....++.++.|....+.|.-++++|++..|+.++.-|-..|+
T Consensus 25 ~~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwLD 66 (75)
T PF04010_consen 25 YDAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWLD 66 (75)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344566788999999999999999999999999988877654
No 364
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.05 E-value=58 Score=29.02 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=52.1
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH-H
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM-R 292 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al-~ 292 (312)
.+.-+++.....++|++|...-..||. -++.....+.|+-.|-+-+|...++.+....-| .
T Consensus 209 llnG~Av~~l~~~~~eeAe~lL~eaL~------------------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 209 LLNGQAVCHLQLGRYEEAESLLEEALD------------------KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHccHHHHHHHhcCHHHHHHHHHHHHh------------------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 356788888999999999999999998 334456688999999999999888777665555 4
Q ss_pred cCCCch
Q 021445 293 DGDDNV 298 (312)
Q Consensus 293 l~p~~~ 298 (312)
.+|+++
T Consensus 271 ~~p~h~ 276 (299)
T KOG3081|consen 271 SHPEHP 276 (299)
T ss_pred cCCcch
Confidence 456543
No 365
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.79 E-value=81 Score=29.79 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=39.8
Q ss_pred HHHHHHHHHhHHHHHHHHcC--CHHHHHHHHHHHHHcCCCchHHHHHH
Q 021445 259 LRKTKSQIFTNSSACKLKLG--DLKGALLDTEFAMRDGDDNVKALFRQ 304 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~--~~~~Ai~~~~~al~l~p~~~Ka~~rr 304 (312)
.+|....++..|.-++.+.. ++..=++.|+++|+.||.|.-+|--|
T Consensus 104 ~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YR 151 (421)
T KOG0529|consen 104 VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYR 151 (421)
T ss_pred hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHH
Confidence 67788889999999999877 47899999999999999999888544
No 366
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=44.74 E-value=94 Score=29.15 Aligned_cols=101 Identities=13% Similarity=0.020 Sum_probs=66.5
Q ss_pred hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHH--------hhhccc-cCCCCchh-------hhHH-HHHHHHHHhHHHH
Q 021445 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRY--------LDICWE-KEGIDEGK-------SSSL-RKTKSQIFTNSSA 272 (312)
Q Consensus 210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~--------l~~~~~-~~~~~~~~-------~~~~-~~~~~~~~~N~a~ 272 (312)
..+.+...+|-.-+-+|+|.+|...-.++-+. +-.... ....+.+. ..+. .......+.-|+.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 45666677788888889999998877665431 100000 00011110 0011 1223446777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 273 ~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
..+..+++..|..-.+++++..|.+...+--..++|..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~ 199 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR 199 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 88999999999999999999999999888877777764
No 367
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=44.43 E-value=81 Score=21.74 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=13.3
Q ss_pred HHHHHHHcCCHHHHHH-------HHHHHHHcCCC
Q 021445 270 SSACKLKLGDLKGALL-------DTEFAMRDGDD 296 (312)
Q Consensus 270 ~a~~~~kl~~~~~Ai~-------~~~~al~l~p~ 296 (312)
.|..+-+.|++++|+. .+.+++...|+
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3344444555555544 44555555554
No 368
>PLN03218 maturation of RBCL 1; Provisional
Probab=44.12 E-value=1e+02 Score=33.19 Aligned_cols=79 Identities=8% Similarity=0.002 Sum_probs=43.5
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHH------------hhhccccCCCCchhhhH-HHH---------HHHHHHhHHH
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRY------------LDICWEKEGIDEGKSSS-LRK---------TKSQIFTNSS 271 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~------------l~~~~~~~~~~~~~~~~-~~~---------~~~~~~~N~a 271 (312)
.+......+.+.|++++|++.|.+..+. +..+. ....-++... +.. -....|..+-
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~--k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG--QSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 3445667788888999998888766431 00000 0000111100 010 0134566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 021445 272 ACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 272 ~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
.+|.+.|++++|++.+++..+.+
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC
Confidence 77777777777777777777665
No 369
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=44.01 E-value=50 Score=28.61 Aligned_cols=65 Identities=14% Similarity=0.002 Sum_probs=45.4
Q ss_pred hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 021445 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (312)
Q Consensus 217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~ 296 (312)
....++.+.+..++|+..-+.-++ .+|....+---+=..+.-.|+|++|+..|+-+-+++|+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVk------------------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVK------------------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh------------------cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 344567888888888887777666 22222222222333455689999999999999999998
Q ss_pred chH
Q 021445 297 NVK 299 (312)
Q Consensus 297 ~~K 299 (312)
..+
T Consensus 68 ~t~ 70 (273)
T COG4455 68 DTV 70 (273)
T ss_pred cch
Confidence 775
No 370
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=43.59 E-value=1.3e+02 Score=26.78 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=45.5
Q ss_pred HhhhhhHHh-hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 216 KVFGNEHYK-KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 216 k~~Gn~~~~-~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
..-|..-+. .++.+.|...|+.+++.+ +....+++.-..-++++++.+.|-..+++++..-
T Consensus 39 ~~~A~~E~~~~~d~~~A~~Ife~glk~f------------------~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l 100 (280)
T PF05843_consen 39 VAYALMEYYCNKDPKRARKIFERGLKKF------------------PSDPDFWLEYLDFLIKLNDINNARALFERAISSL 100 (280)
T ss_dssp HHHHHHHHHTCS-HHHHHHHHHHHHHHH------------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 344444444 567777999999999854 3334455555567788999999999999999665
Q ss_pred CCch--HHHHH
Q 021445 295 DDNV--KALFR 303 (312)
Q Consensus 295 p~~~--Ka~~r 303 (312)
|... +.++.
T Consensus 101 ~~~~~~~~iw~ 111 (280)
T PF05843_consen 101 PKEKQSKKIWK 111 (280)
T ss_dssp SCHHHCHHHHH
T ss_pred CchhHHHHHHH
Confidence 4433 44443
No 371
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=43.25 E-value=27 Score=35.42 Aligned_cols=34 Identities=15% Similarity=-0.087 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.|.....|.-++.+|.+.|++++|.+..+...+.
T Consensus 524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3444557888999999999999999999887744
No 372
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.23 E-value=1.3e+02 Score=27.48 Aligned_cols=70 Identities=13% Similarity=-0.020 Sum_probs=55.6
Q ss_pred hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 225 ~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
.-.+......|.++|..+............+...+......++.+++.-..+.|..+.|+....-.|+++
T Consensus 115 ~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 115 SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 3467888999999999887654433333444555778888899999999999999999999999999886
No 373
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.67 E-value=1.8e+02 Score=24.87 Aligned_cols=80 Identities=23% Similarity=0.202 Sum_probs=53.4
Q ss_pred hHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCH-------HHHHHHHHHHHHc
Q 021445 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-------KGALLDTEFAMRD 293 (312)
Q Consensus 221 ~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~-------~~Ai~~~~~al~l 293 (312)
.+-....+++|++.|.-||-...... .-....+.+++.+|=+|-.+++. ..|++.+.+|++.
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~-----------~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKK-----------EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 55667789999999999997543310 01225567888888888888884 5566667777654
Q ss_pred CC------CchHHHHHHHHHhhhh
Q 021445 294 GD------DNVKALFRQGQVSIIL 311 (312)
Q Consensus 294 ~p------~~~Ka~~rrg~a~~~L 311 (312)
.. +....+|..|..+..|
T Consensus 155 e~~~~~~~~~~~l~YLigeL~rrl 178 (214)
T PF09986_consen 155 EDFPIEGMDEATLLYLIGELNRRL 178 (214)
T ss_pred CcCCCCCchHHHHHHHHHHHHHHh
Confidence 42 2356777777665543
No 374
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=40.81 E-value=1.1e+02 Score=26.85 Aligned_cols=65 Identities=25% Similarity=0.160 Sum_probs=45.4
Q ss_pred hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH----cCCHHHHHHHHHHHHHcCCCc-hH
Q 021445 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDN-VK 299 (312)
Q Consensus 225 ~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al~l~p~~-~K 299 (312)
.+++.+|+..|.++.+ ........+++..|.. -.++.+|...+.+|.+..... .-
T Consensus 90 ~~~~~~A~~~~~~~a~--------------------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~ 149 (292)
T COG0790 90 SRDKTKAADWYRCAAA--------------------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAAL 149 (292)
T ss_pred cccHHHHHHHHHHHhh--------------------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHH
Confidence 3446777777775554 2334567788988888 559999999999999875333 33
Q ss_pred HHHHHHHHhh
Q 021445 300 ALFRQGQVSI 309 (312)
Q Consensus 300 a~~rrg~a~~ 309 (312)
+.++.|.+|.
T Consensus 150 ~~~~l~~~~~ 159 (292)
T COG0790 150 AMYRLGLAYL 159 (292)
T ss_pred HHHHHHHHHH
Confidence 4788777765
No 375
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=40.40 E-value=62 Score=17.51 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
.|+.+-.+|.+.+++++|++.+.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3566677899999999999999887653
No 376
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=40.01 E-value=18 Score=22.86 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=16.5
Q ss_pred EEEEEEECCeeeeEEEEEEeCCCCc
Q 021445 6 CFLDISIGVELEGRIIVEIYNDVIP 30 (312)
Q Consensus 6 v~~d~~~~~~~~G~i~ieL~~~~aP 30 (312)
+.+.+-++|. ||+||||..+.|-
T Consensus 19 ivmRvPleGG--GRLVvEl~~~Ea~ 41 (51)
T PF11314_consen 19 IVMRVPLEGG--GRLVVELNPDEAK 41 (51)
T ss_pred EEEEEecCCC--cEEEEEeCHHHHH
Confidence 5556666554 9999999887654
No 377
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.30 E-value=67 Score=17.54 Aligned_cols=27 Identities=19% Similarity=0.053 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
.|..+-.++.+.|+++.|++.++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577788899999999999998887664
No 378
>PF12854 PPR_1: PPR repeat
Probab=38.97 E-value=70 Score=18.26 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
...|.-+-.+|.+.|+.++|++..++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44678888899999999999987764
No 379
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=38.90 E-value=34 Score=26.51 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=24.8
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhh
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~ 243 (312)
-.+.|..+..+|++.+|+.++-+||.++.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~ 94 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCP 94 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999998653
No 380
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.87 E-value=48 Score=33.73 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=56.4
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
.+.--+.+.+.++|..|+..-.-|+. ..|....+++-|+.||.-+++.+-|+++..-....+
T Consensus 96 ~~~s~~m~~~l~~~~~~~~E~~la~~------------------~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~ 157 (748)
T KOG4151|consen 96 NQASCYMQLGLGEYPKAIPECELALE------------------SQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMD 157 (748)
T ss_pred HHHHHHhhcCccchhhhcCchhhhhh------------------ccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455666677788888777777776 667788888889999999999999999988888999
Q ss_pred CCchHHHH
Q 021445 295 DDNVKALF 302 (312)
Q Consensus 295 p~~~Ka~~ 302 (312)
|.+..+.-
T Consensus 158 p~~~~~~e 165 (748)
T KOG4151|consen 158 PSNVSASE 165 (748)
T ss_pred CCcchHHH
Confidence 99955544
No 381
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.09 E-value=79 Score=18.27 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 021445 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (312)
Q Consensus 278 ~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~ 306 (312)
++++.|-..+++.+...| ++|.|.+-|+
T Consensus 1 kE~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 1 KEFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred ChHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 357889999999999985 5999988775
No 382
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=37.35 E-value=73 Score=22.61 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=13.2
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 268 TNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 268 ~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
.|.|+++-..|+.++|+.++.+++
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHH
Confidence 344555555555555555555555
No 383
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.32 E-value=1.5e+02 Score=20.88 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
-+.-+|.-.=+.|+|++|+..+..++
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34445555566677777777666666
No 384
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.16 E-value=1.9e+02 Score=29.26 Aligned_cols=50 Identities=10% Similarity=-0.038 Sum_probs=39.9
Q ss_pred HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC------CchHHHHHHHHHhhhhC
Q 021445 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD------DNVKALFRQGQVSIILL 312 (312)
Q Consensus 263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p------~~~Ka~~rrg~a~~~L~ 312 (312)
.+.++-|-|.-++++++|..+++.+...|..-| ..+|..-..+.||+.|+
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~ 408 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE 408 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH
Confidence 356777899999999999999999999996554 34566666777887764
No 385
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=37.15 E-value=1.1e+02 Score=29.65 Aligned_cols=62 Identities=19% Similarity=0.078 Sum_probs=46.5
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCH-------HHHHHHH
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-------KGALLDT 287 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~-------~~Ai~~~ 287 (312)
+.+.|-.++-..+|++|...|.+.++.- +-.....++=.|.|+..+++. ++|.+..
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s-----------------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~ 370 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKES-----------------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELF 370 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhcc-----------------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHH
Confidence 4677777888899999999998888721 112455667789999999998 7777777
Q ss_pred HHHHHc
Q 021445 288 EFAMRD 293 (312)
Q Consensus 288 ~~al~l 293 (312)
.++-.+
T Consensus 371 ~~vp~l 376 (468)
T PF10300_consen 371 RKVPKL 376 (468)
T ss_pred HHHHHH
Confidence 777644
No 386
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.77 E-value=1.4e+02 Score=25.18 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka 300 (312)
+---..+++++-|.|++|.+...+... ||++.|-
T Consensus 113 ik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 113 IKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 334456789999999999999999999 8887776
No 387
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.63 E-value=99 Score=29.35 Aligned_cols=43 Identities=16% Similarity=0.062 Sum_probs=35.3
Q ss_pred CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhc
Q 021445 203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (312)
Q Consensus 203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~ 245 (312)
..+....+.|-...++|-.+=..+++++|+..|.++|.++...
T Consensus 13 a~Ir~ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~G 55 (560)
T KOG2709|consen 13 AQIRAAYKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEG 55 (560)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhc
Confidence 3445566677777888988889999999999999999988663
No 388
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=36.57 E-value=1.3e+02 Score=20.71 Aligned_cols=15 Identities=20% Similarity=0.034 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHcCC
Q 021445 281 KGALLDTEFAMRDGD 295 (312)
Q Consensus 281 ~~Ai~~~~~al~l~p 295 (312)
..|++.+..+++..|
T Consensus 30 ~~aie~l~~~~k~e~ 44 (75)
T cd02678 30 QHALEYFMHALKYEK 44 (75)
T ss_pred HHHHHHHHHHHhhCC
Confidence 344444444444444
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=36.50 E-value=1.2e+02 Score=21.89 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=27.6
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~ 244 (312)
...+...|......|++++|+..+++||++...
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344777888899999999999999999997543
No 390
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=36.36 E-value=1.1e+02 Score=25.25 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
+..-..++..+|.-|.+.|++++|++.+.++...
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDY 65 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 4455678999999999999999999999998754
No 391
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.05 E-value=2.2e+02 Score=25.93 Aligned_cols=62 Identities=10% Similarity=-0.051 Sum_probs=43.8
Q ss_pred hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 021445 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (312)
Q Consensus 225 ~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rr 304 (312)
..-.+..+..|++||+. +|....+++-+=.+..++-+-++..+-.+++|..+|++..-|...
T Consensus 44 ~a~~E~klsilerAL~~------------------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 44 RALAERKLSILERALKH------------------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34456778889999993 233333444444455677788999999999999999988766554
No 392
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=35.49 E-value=2.2e+02 Score=31.59 Aligned_cols=46 Identities=7% Similarity=-0.123 Sum_probs=35.8
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
.+|..++-.|.+-+++++|.+.++..++-=.+..+.|.+.|..++.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 3566677888888889999999988886666777888888877653
No 393
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=35.35 E-value=1.8e+02 Score=27.24 Aligned_cols=45 Identities=18% Similarity=0.019 Sum_probs=35.0
Q ss_pred HHhHHHHHHHH---cCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHhhh
Q 021445 266 IFTNSSACKLK---LGDLKGALLDTEFAM-RDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 266 ~~~N~a~~~~k---l~~~~~Ai~~~~~al-~l~p~~~Ka~~rrg~a~~~ 310 (312)
+-...|.++.+ .|+.++|+..+..+| ...+.++..|--.|.+|-.
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44456777777 999999999999955 5567788888888888753
No 394
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.44 E-value=1.4e+02 Score=19.92 Aligned_cols=59 Identities=15% Similarity=0.040 Sum_probs=35.5
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHH
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~ 286 (312)
...|-.+|..|+|-+|-+.....-.. ...+ + -.-....+..--|..+++.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~-------~~~~--~---~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKA-------APGP--E---RDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCC-------T-CC--H---HHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHH-------CCcc--h---HHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 35688899999999999877666541 1111 1 2223333444455566678888888764
No 395
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=34.01 E-value=95 Score=23.22 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=26.9
Q ss_pred hhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (312)
Q Consensus 208 ~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~ 240 (312)
+.+++.....+|-..+-+|+|+.|.+.-.++-+
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~ 87 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAK 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345666777888888899999999999988876
No 396
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.91 E-value=1.7e+02 Score=35.48 Aligned_cols=51 Identities=24% Similarity=0.122 Sum_probs=45.1
Q ss_pred HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
....+..+.-++.-+.|++++++|-..+..|++++....|||+.-|.-+..
T Consensus 2808 ~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2808 DRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred hHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455677888899999999999999999999999999999999998876543
No 397
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.78 E-value=1.3e+02 Score=25.19 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=43.7
Q ss_pred HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
+|....+---++++-+|-|+|.+|...+.++-. |..-+...-.|+++.+.|
T Consensus 163 n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 163 NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 577788888899999999999999999998887 777888888888887654
No 398
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.33 E-value=3e+02 Score=23.37 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=50.5
Q ss_pred hhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHH------HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Q 021445 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK------SQIFTNSSACKLKLGDLKGALLDTEFAMRDG-DD 296 (312)
Q Consensus 224 ~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~-p~ 296 (312)
+....++|...|.+++..+..-.+ .......++.... ...-+-+|..+...+++++|+.....+|..- ..
T Consensus 46 q~~q~~~AS~~Y~~~i~~~~ak~~---~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De 122 (207)
T COG2976 46 QVEQAQEASAQYQNAIKAVQAKKP---KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH
Confidence 344566899999999997754211 1222222222222 1234557777888999999999999999443 34
Q ss_pred chHHHH--HHHHHhh
Q 021445 297 NVKALF--RQGQVSI 309 (312)
Q Consensus 297 ~~Ka~~--rrg~a~~ 309 (312)
+.|++. |.|+.+.
T Consensus 123 ~lk~l~~lRLArvq~ 137 (207)
T COG2976 123 NLKALAALRLARVQL 137 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556554 4454443
No 399
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=32.88 E-value=1.6e+02 Score=29.82 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=53.8
Q ss_pred hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
...+-|.-|-...-|++|.+.|.++|.++..- ..-.....|+-.....+.--+.+.|...+++||+.
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p-------------~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLFKWP-------------NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc-------------cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 34566666666777899999999999987551 11222345555666666666889999999999986
Q ss_pred CC-CchHHHHH
Q 021445 294 GD-DNVKALFR 303 (312)
Q Consensus 294 ~p-~~~Ka~~r 303 (312)
-| .++|.+|-
T Consensus 580 Cpp~~aKtiyL 590 (835)
T KOG2047|consen 580 CPPEHAKTIYL 590 (835)
T ss_pred CCHHHHHHHHH
Confidence 54 56676653
No 400
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.75 E-value=50 Score=30.17 Aligned_cols=71 Identities=7% Similarity=0.068 Sum_probs=48.0
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhH-HHHHHHHcCCHHHHHHHHHHHHHc
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN-SSACKLKLGDLKGALLDTEFAMRD 293 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N-~a~~~~kl~~~~~Ai~~~~~al~l 293 (312)
|.+-.+-.-+.+-|.+--..|.+++. ..|....+|.- -+.-+.-..+++.|...+.++|++
T Consensus 110 w~~y~~Y~~k~k~y~~~~nI~~~~l~------------------khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 110 WSQYAAYVIKKKMYGEMKNIFAECLT------------------KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 44455555555666666677777776 44555555554 222344456889999999999999
Q ss_pred CCCchHHHHH
Q 021445 294 GDDNVKALFR 303 (312)
Q Consensus 294 ~p~~~Ka~~r 303 (312)
+|.+++.|+.
T Consensus 172 N~~~p~iw~e 181 (435)
T COG5191 172 NSRSPRIWIE 181 (435)
T ss_pred CCCCchHHHH
Confidence 9999987754
No 401
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.64 E-value=3.7e+02 Score=26.34 Aligned_cols=83 Identities=16% Similarity=0.029 Sum_probs=58.7
Q ss_pred hhHhhhhhHH-hhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-CHHHHHHHHHHHH
Q 021445 214 SIKVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAM 291 (312)
Q Consensus 214 ~~k~~Gn~~~-~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al 291 (312)
...+.|..+| -.++++.|..+.++|.......+. ....+...++=+|.||.... .+..|.....+|+
T Consensus 48 t~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~-----------fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkai 116 (629)
T KOG2300|consen 48 THLQLGALLLRYTKNVELAKSHLEKAWLISKSIPS-----------FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAI 116 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHccccc-----------HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 3345555555 478899999999999987665432 33455667788899999988 7788888888999
Q ss_pred HcCCCch----HHHHHHHHH
Q 021445 292 RDGDDNV----KALFRQGQV 307 (312)
Q Consensus 292 ~l~p~~~----Ka~~rrg~a 307 (312)
++....+ |-++..|+.
T Consensus 117 elsq~~p~wsckllfQLaql 136 (629)
T KOG2300|consen 117 ELSQSVPYWSCKLLFQLAQL 136 (629)
T ss_pred HHhcCCchhhHHHHHHHHHH
Confidence 8876544 444444443
No 402
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=32.49 E-value=1.7e+02 Score=20.08 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=10.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 021445 270 SSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 270 ~a~~~~kl~~~~~Ai~~~~~al 291 (312)
.|.-.=+.|+|++|+..+..++
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEAL 33 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333344455555555555444
No 403
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=32.48 E-value=74 Score=27.36 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=26.5
Q ss_pred HHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
.+.+|+.+|.|+.++++..+|+++.+++-+
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~ 161 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQVRK 161 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999874
No 404
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.99 E-value=1.8e+02 Score=23.12 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=29.8
Q ss_pred ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHh
Q 021445 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242 (312)
Q Consensus 204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l 242 (312)
+.+++-..-..-.+.|.+|+.+|+++++..++..||.++
T Consensus 73 d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vc 111 (143)
T KOG4056|consen 73 DAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVC 111 (143)
T ss_pred CHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhc
Confidence 334433344445789999999999999999999999865
No 405
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=31.90 E-value=40 Score=27.02 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHHHcCCHHHHHHHHHH-HHHc
Q 021445 273 CKLKLGDLKGALLDTEF-AMRD 293 (312)
Q Consensus 273 ~~~kl~~~~~Ai~~~~~-al~l 293 (312)
.|+++|+|++|++.|.. ..+.
T Consensus 112 ~yl~~~~fd~Al~~~~~~~~~~ 133 (147)
T PF05131_consen 112 IYLDKGDFDEALQYCKTNPAQR 133 (147)
T ss_pred HHHhcCcHHHHHHHccCCHHHH
Confidence 67888999999999987 4443
No 406
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=31.84 E-value=1.7e+02 Score=20.48 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=13.7
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 267 FTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 267 ~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
+..+|.-+=+.|+|++|+..+.++|
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555555566666555555554
No 407
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.28 E-value=2.7e+02 Score=25.92 Aligned_cols=46 Identities=9% Similarity=-0.035 Sum_probs=38.6
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII 310 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~ 310 (312)
.+-.-...-+++.++|.+|+.++.+-+.-.++..+...+.+.+..+
T Consensus 192 ~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~la 237 (389)
T KOG0396|consen 192 QLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLA 237 (389)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 3556677788899999999999999999888888898888887653
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.05 E-value=1.6e+02 Score=19.54 Aligned_cols=27 Identities=15% Similarity=-0.048 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
=+++.-..++++|++++|.++..++..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566678999999999999888764
No 409
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=30.67 E-value=1.4e+02 Score=31.18 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=19.8
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.-|.|.|.-+-..++.+.|+++++++
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 35777777777778888888888765
No 410
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=30.35 E-value=2.7e+02 Score=21.93 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=31.7
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~ 309 (312)
..+...+..+.-+....++.+..|...|......-+-++.++.-|.
T Consensus 75 ~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~ 120 (142)
T PF04048_consen 75 SQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYK 120 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3344455667777777788888888888777777777766665443
No 411
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.32 E-value=2.1e+02 Score=27.95 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=35.4
Q ss_pred hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (312)
Q Consensus 225 ~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~ 294 (312)
.++++.....|.+-|+ ..|..+..+.+-|..-..||+.+.|-..++-|+.-.
T Consensus 450 L~efDRcRkLYEkfle------------------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLE------------------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HhhHHHHHHHHHHHHh------------------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 3455555555665555 566777777777777777888777777777777543
No 412
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=29.83 E-value=33 Score=31.93 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=34.2
Q ss_pred CCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEe-ChHHHHHHhc
Q 021445 101 ERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEH 152 (312)
Q Consensus 101 ~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~-G~~vl~~i~~ 152 (312)
-.+|.|.+.|..-.....+.=|++.+.|. |++.-|+|+|.+ -+.+|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 36799999998766667789999999876 888999999996 5788887754
No 413
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.38 E-value=1.4e+02 Score=29.20 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=20.3
Q ss_pred HHHHHHHhHHHHHHHHcCC-HHHHHHHHHHHHHcCCCchHHH
Q 021445 261 KTKSQIFTNSSACKLKLGD-LKGALLDTEFAMRDGDDNVKAL 301 (312)
Q Consensus 261 ~~~~~~~~N~a~~~~kl~~-~~~Ai~~~~~al~l~p~~~Ka~ 301 (312)
|..+.+|.--|.=.+..+. .+.|...+.++|+.+|++++.|
T Consensus 136 p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 136 PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 3334444433333333333 5555555666666666665433
No 414
>PLN03077 Protein ECB2; Provisional
Probab=28.62 E-value=1.1e+02 Score=31.94 Aligned_cols=28 Identities=14% Similarity=-0.171 Sum_probs=19.7
Q ss_pred HHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 265 QIFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
..|+.+-.+|.+.+++++|++.+.+.+.
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3566666777777777777777777764
No 415
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.56 E-value=1.5e+02 Score=26.65 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=37.2
Q ss_pred hhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 224 ~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
++.+.++|+..|++.+++ + ....++ --.++-.+--.++++++|++.++.+.+.|
T Consensus 39 ~e~~p~~Al~sF~kVlel-------E-gEKgeW------GFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLEL-------E-GEKGEW------GFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhc-------c-cccchh------HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 455789999999999984 1 111111 12344455567788899999998888887
No 416
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=28.41 E-value=73 Score=29.97 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC
Q 021445 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD 279 (312)
Q Consensus 231 A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~ 279 (312)
|....++||++|... ........|.++|.+++-||+
T Consensus 330 a~~l~~~Al~yL~kA-------------~d~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 330 AQELIKKALEYLKKA-------------QDEDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHHHH-------------HHS--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------------hccCChhHHHHHHHHHhhhhc
Confidence 466667777777653 223344578888888888875
No 417
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.39 E-value=2.1e+02 Score=26.92 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=46.0
Q ss_pred HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc--CCHHHHHHHHHH
Q 021445 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDLKGALLDTEF 289 (312)
Q Consensus 216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl--~~~~~Ai~~~~~ 289 (312)
..++..+|+..+|..|.+.|..++.- ..+.+ ......++.+++.||..= -+|++|.+..++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r--------~l~~~-----~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRR--------LLSAV-----NHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc--------ccChh-----hhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45777999999999999999999872 11111 234566888888888874 478999998884
No 418
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=28.34 E-value=1e+02 Score=24.72 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=26.9
Q ss_pred hhhhHhhhhhHHhhh-cHHHHHHHHHHHHHHhh
Q 021445 212 VDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLD 243 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~-~y~~A~~~Y~kal~~l~ 243 (312)
-..-.+.|..+..+| ++.+|+.+|-+||.++.
T Consensus 90 Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~ 122 (148)
T TIGR00985 90 FLQEVQLGEELMAQGTNVDEGAVHFYNALKVYP 122 (148)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 334467899999999 99999999999998763
No 419
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=28.03 E-value=1.6e+02 Score=28.80 Aligned_cols=44 Identities=7% Similarity=-0.077 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 021445 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (312)
Q Consensus 263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~ 306 (312)
...++++-..-.-|-+.|.+.-..|.++|..+|+++..|.-.|.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~ 147 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK 147 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh
Confidence 45677777766667777999999999999999999988766554
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=27.70 E-value=66 Score=29.94 Aligned_cols=58 Identities=17% Similarity=0.059 Sum_probs=43.7
Q ss_pred hhcHHHHHHHHHHHHHHhhhccccCCCCchhh---hHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKS---SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 225 ~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
...|+++-..|..++...+. +.. -...|..+..++.+|.++..+|+++.|-+.+++||
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp---------~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDP---------NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CHHHHHHHHHHHHHHHccCH---------HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677888888887764321 111 12456778889999999999999999999999998
No 421
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=26.95 E-value=2.9e+02 Score=21.05 Aligned_cols=81 Identities=9% Similarity=-0.013 Sum_probs=49.1
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCC--chhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHH
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID--EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~ 286 (312)
++.+-....++..+...++++.+...-.||..++......-+.+ .+-...+..++.-+..-+..+. +.+-.+.++.
T Consensus 26 yd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~~L~~A~--~~~d~~~l~~ 103 (122)
T PF02561_consen 26 YDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIRQLVQAN--LKKDPERLDE 103 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHH--HTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHH--HhCCHHHHHH
Confidence 34566667788889999999999999999999887654333333 2333334444433333344443 3444455555
Q ss_pred HHHHH
Q 021445 287 TEFAM 291 (312)
Q Consensus 287 ~~~al 291 (312)
+..++
T Consensus 104 v~~~l 108 (122)
T PF02561_consen 104 VIRIL 108 (122)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 422
>PRK05685 fliS flagellar protein FliS; Validated
Probab=26.88 E-value=3.1e+02 Score=21.37 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=48.5
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCc--hhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHH
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDE--GKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~ 286 (312)
++.+-.....+..+..+++++++...-.||..++......-+.+. +-...+..++.-+...+..+..+.. .+.++.
T Consensus 32 ydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~L~~A~~~~d--~~~l~e 109 (132)
T PRK05685 32 YEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRRLLEANLRND--VQAIDE 109 (132)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHH
Confidence 345666677788889999999999999999998866543333322 3334455555444444444444432 334443
Q ss_pred HHHHH
Q 021445 287 TEFAM 291 (312)
Q Consensus 287 ~~~al 291 (312)
+..+|
T Consensus 110 v~~il 114 (132)
T PRK05685 110 VEGLL 114 (132)
T ss_pred HHHHH
Confidence 33333
No 423
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=26.76 E-value=1.8e+02 Score=28.01 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=25.6
Q ss_pred hhhhhHhhhhhHHhhhcHHHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHYKKQDYKMALRKYRKAL 239 (312)
Q Consensus 211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal 239 (312)
...+|++.|..+.++|+++-|..+|+++=
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 34579999999999999999999999864
No 424
>PF13041 PPR_2: PPR repeat family
Probab=25.52 E-value=1.7e+02 Score=17.93 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=29.2
Q ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC-CCchHHHH
Q 021445 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDG-DDNVKALF 302 (312)
Q Consensus 264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~-p~~~Ka~~ 302 (312)
...|+-+=.+|.+.+++++|++.+++..+.. +-+...|-
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3467777889999999999999999998654 23444443
No 425
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=25.42 E-value=93 Score=25.37 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=30.2
Q ss_pred hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 226 ~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
+...-....|..|+.+|+..... .+....+--=+|.|+..++++. =-.+++++++..+
T Consensus 51 ~~l~i~r~~w~dA~rlLr~l~~~-----------~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 51 GWLHIVRGDWDDALRLLRELEER-----------APGFPYAKALLALCLYALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcc-----------CCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC
Confidence 33444445567777776553111 1111222334677888888742 2334777777764
No 426
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.91 E-value=1.3e+02 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445 266 IFTNSSACKLKLGDLKGALLDTEFAMR 292 (312)
Q Consensus 266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~ 292 (312)
+..|.++||-.++++++|+..+++.|.
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~ 50 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLN 50 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHH
Confidence 457899999999999999999999984
No 427
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=24.90 E-value=1.2e+02 Score=22.21 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=27.5
Q ss_pred hhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241 (312)
Q Consensus 207 ~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~ 241 (312)
..++.|....+.+..+++.|+|..|+.....|++.
T Consensus 3 ~~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~ 37 (118)
T PF05168_consen 3 DWLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEK 37 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45778888889999999999998888777777664
No 428
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=24.67 E-value=2.1e+02 Score=26.14 Aligned_cols=34 Identities=24% Similarity=0.148 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHHHHHHHcC-----CHHHHHHHHHHHHHc
Q 021445 260 RKTKSQIFTNSSACKLKLG-----DLKGALLDTEFAMRD 293 (312)
Q Consensus 260 ~~~~~~~~~N~a~~~~kl~-----~~~~Ai~~~~~al~l 293 (312)
...+..++.=+|.+++.++ +|++|+..|++++..
T Consensus 172 r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 172 RAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 4455566777888888888 899999999999964
No 429
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=24.44 E-value=2.3e+02 Score=22.87 Aligned_cols=51 Identities=4% Similarity=-0.207 Sum_probs=34.4
Q ss_pred HHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311 (312)
Q Consensus 261 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L 311 (312)
|....+-.=-+-.++..++|.+|+...+.+.+-.+..+-+---++.|+..+
T Consensus 41 P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 41 PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 333334444567788999999999999999988776553333445555543
No 430
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.43 E-value=7.6e+02 Score=24.76 Aligned_cols=86 Identities=14% Similarity=0.001 Sum_probs=50.7
Q ss_pred hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc--ccC----CCCchhh-hHHHHHHHHHHhHHHHHHHHcCCHHHHH
Q 021445 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW--EKE----GIDEGKS-SSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (312)
Q Consensus 212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~--~~~----~~~~~~~-~~~~~~~~~~~~N~a~~~~kl~~~~~Ai 284 (312)
+..+.+-+...-.+|+.+-|...-.+||-.++... ... .+.-+-. ..-...+..+ .---+-..+-|-|.-|+
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l-~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLAL-FRYMQSLAQRGCWRTAL 362 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHH-HHHHHHHHhcCChHHHH
Confidence 44566777777778888888888888876665421 100 1110000 0112222222 22233445678999999
Q ss_pred HHHHHHHHcCCC-ch
Q 021445 285 LDTEFAMRDGDD-NV 298 (312)
Q Consensus 285 ~~~~~al~l~p~-~~ 298 (312)
+.|.-.|++||. ++
T Consensus 363 E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 363 EWCKLLLSLDPSEDP 377 (665)
T ss_pred HHHHHHhhcCCcCCc
Confidence 999999999998 44
No 431
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=23.35 E-value=1e+02 Score=31.41 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH-
Q 021445 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM- 291 (312)
Q Consensus 213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al- 291 (312)
.++++.|..++....|++|.+.|.+.-. .-|...|++.++.|++-...+...-
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~--------------------------~e~~~ecly~le~f~~LE~la~~Lpe 850 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD--------------------------TENQIECLYRLELFGELEVLARTLPE 850 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--------------------------hHhHHHHHHHHHhhhhHHHHHHhcCc
Q ss_pred --HcCCCchHHHHHHHHHhhhhC
Q 021445 292 --RDGDDNVKALFRQGQVSIILL 312 (312)
Q Consensus 292 --~l~p~~~Ka~~rrg~a~~~L~ 312 (312)
++=|.-+.++-++|+|-.+.+
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHH
No 432
>PF05942 PaREP1: Archaeal PaREP1/PaREP8 family; InterPro: IPR010268 This family consists of several archaeal PaREP1 proteins, the function of the family is unknown.; PDB: 2Q00_A 2JPU_A.
Probab=22.98 E-value=1.2e+02 Score=22.99 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=23.4
Q ss_pred hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (312)
Q Consensus 209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~ 240 (312)
++.+....+.|..+.++|++.+|..++=+|.+
T Consensus 3 l~~a~~~l~~A~e~L~~G~~rqAaeK~~~A~~ 34 (115)
T PF05942_consen 3 LEEAEKELEEADELLEKGDLRQAAEKAFKAVE 34 (115)
T ss_dssp -BHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667777888888888888888888766665
No 433
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.92 E-value=60 Score=21.80 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=9.0
Q ss_pred CCCeEEEEEEE
Q 021445 2 ARPRCFLDISI 12 (312)
Q Consensus 2 ~~~~v~~d~~~ 12 (312)
.+|+||+||.-
T Consensus 35 ~HPrV~L~mg~ 45 (62)
T COG4391 35 DHPRVFLDMGD 45 (62)
T ss_pred CCCEEEEEcCC
Confidence 48999999953
No 434
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=22.89 E-value=90 Score=21.36 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=16.9
Q ss_pred hHhhhhhHHhhhcHHHHHHHH
Q 021445 215 IKVFGNEHYKKQDYKMALRKY 235 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y 235 (312)
+.++=|.+|..|+|++|.+.-
T Consensus 9 ~~~~F~~l~~~g~y~eAA~~A 29 (66)
T PF13838_consen 9 YVQQFNELFSQGQYEEAAKVA 29 (66)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 567889999999999998764
No 435
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=22.39 E-value=4.2e+02 Score=23.20 Aligned_cols=58 Identities=29% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH----cCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 021445 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (312)
Q Consensus 229 ~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al~l~p~~~Ka~~rr 304 (312)
..|+..|.+|-.. ....+..+++.+|.+ -.++.+|+..+.+|-+... ..+.|+.
T Consensus 172 ~~A~~~~~~aa~~--------------------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~ 229 (292)
T COG0790 172 KKALYLYRKAAEL--------------------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNL 229 (292)
T ss_pred HhHHHHHHHHHHh--------------------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHH
Confidence 4667777776662 245578889988877 3489999999999999876 8888888
Q ss_pred HHHh
Q 021445 305 GQVS 308 (312)
Q Consensus 305 g~a~ 308 (312)
+..+
T Consensus 230 ~~~~ 233 (292)
T COG0790 230 GLMY 233 (292)
T ss_pred HHHH
Confidence 8444
No 436
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=22.33 E-value=61 Score=19.74 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=8.2
Q ss_pred CCCeEEEEEEE
Q 021445 2 ARPRCFLDISI 12 (312)
Q Consensus 2 ~~~~v~~d~~~ 12 (312)
.+|+||++|.-
T Consensus 15 gHPrVyl~l~~ 25 (40)
T PF10276_consen 15 GHPRVYLNLDD 25 (40)
T ss_dssp CCCCEEEE-TT
T ss_pred CCCeEEEecCC
Confidence 58999998874
No 437
>KOG4509 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.06 E-value=3e+02 Score=22.90 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=29.6
Q ss_pred hhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh
Q 021445 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (312)
Q Consensus 208 ~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~ 244 (312)
.+..|....-.+...=++|+|.+|+-+|+.+|+++..
T Consensus 11 ~~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e 47 (247)
T KOG4509|consen 11 LLKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAE 47 (247)
T ss_pred hhhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHH
Confidence 3445666667777888999999999999999998654
No 438
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=22.04 E-value=6.6e+02 Score=25.11 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=52.0
Q ss_pred hhhhhHhhhhhHH-hhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445 211 AVDSIKVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (312)
Q Consensus 211 ~~~~~k~~Gn~~~-~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 289 (312)
.+....+.|.-++ ...++++|...-+||+.++.. ..+...+..+..=++.++.+.+... |+..|++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~ 124 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER------------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDK 124 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence 4455567777777 467899999999999886533 1144555555555688888888766 9999999
Q ss_pred HHHcCCC
Q 021445 290 AMRDGDD 296 (312)
Q Consensus 290 al~l~p~ 296 (312)
+++.-.+
T Consensus 125 ~I~~~~~ 131 (608)
T PF10345_consen 125 AIEDSET 131 (608)
T ss_pred HHHHHhc
Confidence 9866544
No 439
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=21.96 E-value=2.3e+02 Score=26.58 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCch
Q 021445 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---------GDLKGALLDTEFAMRDGDDNV 298 (312)
Q Consensus 228 y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl---------~~~~~Ai~~~~~al~l~p~~~ 298 (312)
-..|+..|++-++.+........+..-+.. .......++.++|.+|.|+ +....++..+..+...-..+.
T Consensus 265 ~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d-~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~ 343 (371)
T PF12309_consen 265 CSKAIKYYQKFLDSYKSPDSGKLPEKLDED-ELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHP 343 (371)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCCcHH-HHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 367888888888876532211111112222 3334466899999999987 456677777777775543343
Q ss_pred H
Q 021445 299 K 299 (312)
Q Consensus 299 K 299 (312)
.
T Consensus 344 ~ 344 (371)
T PF12309_consen 344 E 344 (371)
T ss_pred h
Confidence 3
No 440
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.75 E-value=4.1e+02 Score=21.71 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=19.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445 268 TNSSACKLKLGDLKGALLDTEFAMRDGD 295 (312)
Q Consensus 268 ~N~a~~~~kl~~~~~Ai~~~~~al~l~p 295 (312)
.++-.| ++.|+|+.|+.++.+|..+-.
T Consensus 91 ~~L~~~-i~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 91 SNLREC-IKKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HHHHHH-HHcCcHHHHHHHHHHHHHHHH
Confidence 333333 667999999999999986643
No 441
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=21.22 E-value=1.4e+02 Score=29.49 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445 230 MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (312)
Q Consensus 230 ~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 290 (312)
.++..|.+||...... ......--|.-+|-+|++.++|.+|+...-.|
T Consensus 297 ~~~~l~~~AI~sa~~~-------------Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 297 TPLELFNEAISSARTY-------------YNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp -HHHHHHHHHHHHHHH-------------CTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-------------hcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 3466677777643321 12223334677899999999999999876665
No 442
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.95 E-value=3.6e+02 Score=20.02 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=38.6
Q ss_pred HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI 309 (312)
Q Consensus 260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~ 309 (312)
...+..-.++.|..-+-.|+|+.|.+...++-+..+.-.-+|.-.|+|=.
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~ 104 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQ 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34445566778888889999999999999998887777777776666543
No 443
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=20.69 E-value=3.6e+02 Score=30.05 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=46.9
Q ss_pred hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc-----------ccCCCCchhhh-------HHHHHHHHHHhHHHHHHHH
Q 021445 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGIDEGKSS-------SLRKTKSQIFTNSSACKLK 276 (312)
Q Consensus 215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~-----------~~~~~~~~~~~-------~~~~~~~~~~~N~a~~~~k 276 (312)
|...|..++++.+-+.|.....+||+.+.... .....+.|-.. ...|.+..+|+=..-.-+|
T Consensus 1567 W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik 1646 (1710)
T KOG1070|consen 1567 WIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK 1646 (1710)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc
Confidence 34455555555555666666666666553310 01111111111 1123344445544445555
Q ss_pred cCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHhh
Q 021445 277 LGDLKGALLDTEFAMRD--GDDNVKALFRQGQVSI 309 (312)
Q Consensus 277 l~~~~~Ai~~~~~al~l--~p~~~Ka~~rrg~a~~ 309 (312)
.++.+.+...+++++.+ .|...|-+|.+-..|.
T Consensus 1647 ~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1647 HGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 56666666666666643 3566666666655554
No 444
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=20.56 E-value=3e+02 Score=19.06 Aligned_cols=18 Identities=33% Similarity=0.122 Sum_probs=8.2
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 021445 274 KLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 274 ~~kl~~~~~Ai~~~~~al 291 (312)
.-+.|+|++|+..+..+|
T Consensus 16 ~D~~g~y~eA~~lY~~al 33 (75)
T cd02684 16 KDQRGDAAAALSLYCSAL 33 (75)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 334445554444444444
No 445
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=20.31 E-value=1.2e+02 Score=29.01 Aligned_cols=33 Identities=15% Similarity=-0.003 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (312)
Q Consensus 259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 291 (312)
++|....-++-+|+|+-.|.+|.+|.+.+..|.
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778889999999999999998888776
No 446
>KOG2239 consensus Transcription factor containing NAC and TS-N domains [Transcription]
Probab=20.18 E-value=1.7e+02 Score=24.69 Aligned_cols=29 Identities=7% Similarity=0.118 Sum_probs=20.8
Q ss_pred CCCCChhhhhhhhhhhHhhhhhHHhhhcH
Q 021445 200 QTPNELSWWMNAVDSIKVFGNEHYKKQDY 228 (312)
Q Consensus 200 ~~~~~~~~~~~~~~~~k~~Gn~~~~~~~y 228 (312)
-+.++++-++..+...+.++-.+.+..++
T Consensus 170 ve~kDIeLVmsQanvSR~kAVkALk~~~~ 198 (209)
T KOG2239|consen 170 VEAKDIELVMSQANVSRAKAVKALKNNNN 198 (209)
T ss_pred CchhhHHHHHHHhhhhHHHHHHHHHhccc
Confidence 36677777787887778877777776543
Done!