Query 021448
Match_columns 312
No_of_seqs 219 out of 1388
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 04:18:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nug_A Ribonuclease III, RNAse 100.0 1.5E-49 5.1E-54 351.5 21.6 209 35-269 3-219 (221)
2 3n3w_A Ribonuclease III; nucle 100.0 5.3E-51 1.8E-55 366.0 11.7 227 20-269 14-247 (248)
3 3c4b_A Endoribonuclease dicer; 100.0 3.2E-49 1.1E-53 358.5 22.6 232 35-270 14-264 (265)
4 1o0w_A Ribonuclease III, RNAse 100.0 1.4E-48 4.9E-53 351.5 18.7 217 33-270 18-250 (252)
5 2a11_A Ribonuclease III, RNAse 100.0 3.1E-48 1.1E-52 347.5 6.0 215 35-271 6-233 (242)
6 3rv0_A K. polysporus DCR1; RNA 100.0 1.7E-46 5.7E-51 349.6 9.4 220 36-275 85-326 (341)
7 3o2r_A Ribonuclease III; struc 100.0 7E-37 2.4E-41 258.8 11.9 142 35-197 27-168 (170)
8 3rv1_A K. polysporus DCR1; RNA 100.0 3.6E-34 1.2E-38 254.4 11.1 144 37-198 86-242 (246)
9 2qvw_A GLP_546_48378_50642; di 100.0 3.7E-29 1.3E-33 253.8 12.8 133 34-197 593-753 (756)
10 2qvw_A GLP_546_48378_50642; di 99.9 1.4E-29 4.7E-34 257.0 2.4 165 58-272 324-500 (756)
11 1u61_A Hypothetical protein; s 99.8 3.1E-21 1.1E-25 156.3 10.4 107 65-193 9-127 (138)
12 2gsl_A Hypothetical protein; a 99.8 1.4E-19 4.9E-24 146.2 7.6 109 65-196 12-130 (137)
13 1qu6_A Protein kinase PKR; dsR 99.6 2.3E-16 7.9E-21 134.3 5.6 107 204-312 12-124 (179)
14 2yt4_A Protein DGCR8; DSRBD, R 99.6 2.5E-14 8.5E-19 126.4 12.8 108 204-312 21-150 (232)
15 1x48_A Interferon-induced, dou 99.5 3.7E-14 1.3E-18 106.5 10.8 73 204-277 5-82 (88)
16 3llh_A RISC-loading complex su 99.5 2.6E-14 9E-19 107.8 9.6 71 204-275 13-88 (90)
17 3adl_A RISC-loading complex su 99.5 5E-14 1.7E-18 105.7 10.2 68 204-272 14-87 (88)
18 3adg_A F21M12.9 protein; HYL1, 99.5 4.6E-14 1.6E-18 102.3 9.2 64 205-268 3-72 (73)
19 2dix_A Interferon-inducible do 99.5 8.4E-14 2.9E-18 103.6 10.1 68 204-272 7-79 (84)
20 3adj_A F21M12.9 protein; HYL1, 99.5 4.4E-14 1.5E-18 103.2 8.4 65 205-269 4-74 (76)
21 1di2_A XLRBPA, double stranded 99.5 7.6E-14 2.6E-18 100.0 9.3 62 206-268 1-68 (69)
22 2cpn_A TAR RNA-binding protein 99.5 1.2E-13 4.2E-18 103.8 10.4 67 204-271 15-87 (89)
23 1x49_A Interferon-induced, dou 99.5 5.5E-14 1.9E-18 107.4 8.1 71 204-274 13-88 (97)
24 1t4n_A Ribonuclease III; DSRBD 99.5 4.1E-14 1.4E-18 106.7 6.1 66 205-270 6-76 (94)
25 1ekz_A DSRBDIII, maternal effe 99.5 3E-14 1E-18 104.1 4.7 65 204-269 6-75 (76)
26 1uhz_A Staufen (RNA binding pr 99.5 3.2E-13 1.1E-17 101.5 9.9 65 204-269 5-75 (89)
27 2khx_A Ribonuclease 3; drosha, 99.4 8.7E-14 3E-18 103.7 5.9 65 205-269 1-76 (85)
28 2l2n_A Hyponastic leave 1; DSR 99.4 3.2E-13 1.1E-17 104.3 8.8 70 203-272 15-90 (103)
29 1x47_A DGCR8 protein; structur 99.4 5.2E-13 1.8E-17 102.2 9.8 66 204-269 15-84 (98)
30 1whq_A RNA helicase A; double- 99.4 3.5E-13 1.2E-17 103.3 8.1 69 204-272 5-78 (99)
31 1t4o_A Ribonuclease III; RNT1P 99.4 2.9E-13 9.9E-18 105.6 7.2 67 205-271 8-79 (117)
32 2b7t_A Double-stranded RNA-spe 99.4 9.8E-13 3.3E-17 95.3 8.8 65 204-270 3-72 (73)
33 2l33_A Interleukin enhancer-bi 99.4 1.6E-12 5.5E-17 97.8 9.4 70 205-276 14-88 (91)
34 1uil_A Double-stranded RNA-bin 99.4 1.6E-12 5.3E-17 102.0 9.2 70 205-274 26-104 (113)
35 1whn_A Hypothetical protein ri 99.4 1.4E-12 4.7E-17 104.3 9.0 68 204-271 25-96 (128)
36 2dmy_A Spermatid perinuclear R 99.4 3.2E-12 1.1E-16 97.6 9.7 67 204-272 15-86 (97)
37 2ljh_A Double-stranded RNA-spe 99.3 7.5E-12 2.6E-16 97.9 8.3 64 204-272 36-104 (114)
38 2b7v_A Double-stranded RNA-spe 99.2 5.8E-11 2E-15 85.4 8.4 62 204-270 3-69 (71)
39 3p1x_A Interleukin enhancer-bi 99.1 2E-10 6.9E-15 83.4 8.7 63 205-272 7-74 (75)
40 1qu6_A Protein kinase PKR; dsR 99.0 4.9E-10 1.7E-14 95.0 8.4 68 204-271 103-174 (179)
41 2l3j_A Double-stranded RNA-spe 98.9 3.6E-09 1.2E-13 93.5 9.8 64 205-270 4-72 (236)
42 2l3j_A Double-stranded RNA-spe 98.7 4.7E-08 1.6E-12 86.4 9.8 62 204-270 160-226 (236)
43 2yt4_A Protein DGCR8; DSRBD, R 98.5 1.6E-07 5.6E-12 82.6 6.8 64 204-271 129-200 (232)
44 2db2_A KIAA0890 protein; DSRM 96.3 0.032 1.1E-06 42.3 9.2 76 201-276 13-96 (119)
45 2kou_A Dicer-like protein 4; A 95.3 0.062 2.1E-06 40.6 7.3 70 205-276 4-87 (102)
46 3adl_A RISC-loading complex su 94.9 0.0067 2.3E-07 44.7 0.9 23 290-312 14-36 (88)
47 2cpn_A TAR RNA-binding protein 94.4 0.0075 2.6E-07 44.6 0.2 23 290-312 15-37 (89)
48 1ekz_A DSRBDIII, maternal effe 93.8 0.015 5.3E-07 41.4 0.8 21 291-312 7-27 (76)
49 1whn_A Hypothetical protein ri 93.6 0.032 1.1E-06 44.0 2.5 22 291-312 26-47 (128)
50 1x47_A DGCR8 protein; structur 93.2 0.017 5.8E-07 43.4 0.2 23 290-312 15-37 (98)
51 2l2n_A Hyponastic leave 1; DSR 93.2 0.013 4.4E-07 44.5 -0.5 23 290-312 16-38 (103)
52 1uil_A Double-stranded RNA-bin 92.2 0.073 2.5E-06 41.0 2.6 22 290-312 25-46 (113)
53 1ztd_A Hypothetical protein PF 91.8 1 3.5E-05 34.0 8.3 90 67-193 11-100 (133)
54 3htx_A HEN1; HEN1, small RNA m 90.3 0.39 1.3E-05 49.4 6.3 67 206-275 18-101 (950)
55 2dix_A Interferon-inducible do 89.4 0.094 3.2E-06 38.0 0.8 21 291-312 8-28 (84)
56 1x49_A Interferon-induced, dou 88.9 0.077 2.6E-06 39.7 -0.0 22 290-312 13-34 (97)
57 3llh_A RISC-loading complex su 86.4 0.19 6.3E-06 36.9 0.8 21 291-312 14-34 (90)
58 2dmy_A Spermatid perinuclear R 82.4 0.3 1E-05 36.4 0.4 21 290-312 15-35 (97)
59 2nug_A Ribonuclease III, RNAse 74.7 0.5 1.7E-05 40.4 -0.5 22 291-312 150-171 (221)
60 3n3w_A Ribonuclease III; nucle 74.2 0.65 2.2E-05 40.6 0.0 23 290-312 176-198 (248)
61 2a11_A Ribonuclease III, RNAse 70.2 0.9 3.1E-05 39.4 0.0 23 290-312 161-183 (242)
62 1o0w_A Ribonuclease III, RNAse 68.0 0.87 3E-05 39.8 -0.6 22 291-312 179-200 (252)
63 2l33_A Interleukin enhancer-bi 56.0 1.5 5E-05 32.2 -1.2 19 292-312 15-33 (91)
64 3bid_A UPF0339 protein NMB1088 42.5 48 0.0016 22.3 4.9 39 230-272 10-49 (64)
65 2l6m_A Protein dicer; DSRBD, h 38.2 1.2E+02 0.004 22.4 9.8 65 206-270 24-105 (121)
66 3rv0_A K. polysporus DCR1; RNA 37.7 6.9 0.00024 35.7 0.0 23 290-312 253-276 (341)
67 3iwf_A Transcription regulator 35.3 38 0.0013 25.1 3.9 44 80-125 19-65 (107)
68 1ng7_A Poliovirus 3A-N, genome 31.6 18 0.00063 24.1 1.3 16 295-310 32-47 (60)
69 2o3f_A Putative HTH-type trans 24.0 30 0.001 25.8 1.5 44 80-125 23-69 (111)
No 1
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=1.5e-49 Score=351.46 Aligned_cols=209 Identities=27% Similarity=0.354 Sum_probs=186.0
Q ss_pred HHHHHHHHcCcccCChhHHHHHHcCCCCCCCCCcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHHHHcCChHHHHH
Q 021448 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114 (312)
Q Consensus 35 ~~~~le~~lgy~f~~~~Ll~~AlTh~S~~~~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r~~lvsn~~La~ 114 (312)
.+.+||++|||+|+|++||.+||||+|+....+|||||||||+||+++|+++||.+||+.++|.|+.+|+.+||+++|+.
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~ 82 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 82 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHH
Confidence 46789999999999999999999999998767999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCchHHHhhcchhhhHHHHHHHHHhhccccccccCCccCCchhHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhh
Q 021448 115 VAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194 (312)
Q Consensus 115 ia~~~gL~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~lad~fEAliGAiylD~G~~~~~~~~~v~~ll~p 194 (312)
+|.++||++|++.++. ...+++++|+|||+|||||+|+|++.+.+++|+..++.|
T Consensus 83 ~a~~l~l~~~l~~~~~-------------------------~~~~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~ 137 (221)
T 2nug_A 83 LAQKLELHKFIRIKRG-------------------------KINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKE 137 (221)
T ss_dssp HHHTTTGGGTCBSCTT-------------------------CCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHcChHHhhccCCC-------------------------cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999987743 122899999999999999999999975577999999988
Q ss_pred hcC-hhhh-hcCCchhHHHHHHHHhcCCc-eeeEEee-eC----CeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHH
Q 021448 195 IVT-LEEL-QQQPQPVTLLFKLCQKNGKQ-VDIKHWR-KN----RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266 (312)
Q Consensus 195 ~i~-~~~l-~~~~~p~~~L~e~~q~~~~~-~~~~~~~-~g----~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~ 266 (312)
.+. .... ....|||+.||||||+++.. +.|+... .| +.|+|.|+++|+ +|+|.|.|||+||+.||+.||+.
T Consensus 138 ~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~ 216 (221)
T 2nug_A 138 DILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKL 216 (221)
T ss_dssp HHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHH
Confidence 876 4332 22469999999999999876 4687543 33 689999999999 99999999999999999999999
Q ss_pred Hhh
Q 021448 267 LAQ 269 (312)
Q Consensus 267 L~~ 269 (312)
|..
T Consensus 217 L~~ 219 (221)
T 2nug_A 217 LEE 219 (221)
T ss_dssp HC-
T ss_pred hhc
Confidence 963
No 2
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=5.3e-51 Score=366.03 Aligned_cols=227 Identities=30% Similarity=0.371 Sum_probs=129.8
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHcCcccCChhHHHHHHcCCCCCCCCCcchhhhhhHHhhHHHHHHHHHHHCCCCCccch
Q 021448 20 KEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99 (312)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~le~~lgy~f~~~~Ll~~AlTh~S~~~~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~L 99 (312)
.++.+++.|.+ +. .+.+||++|||+|+|++||.+||||+|+....+|||||||||+||+++|+++||.+||+.++|.|
T Consensus 14 ~~~~~~~~~~~-~~-~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~L 91 (248)
T 3n3w_A 14 GTENLYFQSNA-MK-NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDL 91 (248)
T ss_dssp ------------CT-THHHHHHHHTCCCSSHHHHHHHTBCTTSBTTBCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCH
T ss_pred ccceeeeCCcc-HH-HHHHHHHHHCCCCCCHHHHHHHhcCcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44455554422 22 48999999999999999999999999998768999999999999999999999999999999999
Q ss_pred hHHHHHcCChHHHHHHHHHcCchHHHhhcchhhhHHHHHHHHHhhccccccccCCccCCchhHHHHHHHHHHHHhhcCCc
Q 021448 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 179 (312)
Q Consensus 100 t~~r~~lvsn~~La~ia~~~gL~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~lad~fEAliGAiylD~G~ 179 (312)
+.+|+.+|||++|+.+|.++||+++++.++... ..++ ...+++++|+|||+|||||+|+|+
T Consensus 92 s~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e~------------------~~~g-~~~~~~lad~fEAliGAiyld~G~ 152 (248)
T 3n3w_A 92 SKLRAALVNEKSFAKIANSLNLGDFILMSVAEE------------------NNGG-KEKPSILSDALEAIIGAIHLEAGF 152 (248)
T ss_dssp HHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHHH------------------HTTG-GGCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHCHHHHHHHHHHcCcHHHhhcCchhh------------------hcCC-CCCccHHHHHHHHHHHHHHHHCCh
Confidence 999999999999999999999999999875421 0122 456899999999999999999997
Q ss_pred ChHHHHHHHHHhhhhhcChhhh-hcCCchhHHHHHHHHhcCCce-eeEEee-eC----CeEEEEEEECCEEEEEeeccCH
Q 021448 180 DLQKLWMIFRGLLEPIVTLEEL-QQQPQPVTLLFKLCQKNGKQV-DIKHWR-KN----RKNIASVYVDGSFVASASSEQK 252 (312)
Q Consensus 180 ~~~~~~~~v~~ll~p~i~~~~l-~~~~~p~~~L~e~~q~~~~~~-~~~~~~-~g----~~f~~~V~v~g~~~~~g~g~sk 252 (312)
+ .+++|+..++.|.+..... ....|||+.||||||+++..+ .|+... .| +.|+|.|+++|+.+|+|.|.||
T Consensus 153 ~--~~~~~i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SK 230 (248)
T 3n3w_A 153 E--FAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSK 230 (248)
T ss_dssp H--HHHHHHHHHHHHHCC--------------------------------------------------------------
T ss_pred H--HHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCH
Confidence 7 5668999999998865332 234699999999999998765 476542 33 6899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 021448 253 EIAKLNAAREALEKLAQ 269 (312)
Q Consensus 253 k~Ae~~AA~~AL~~L~~ 269 (312)
|+||++||+.||+.|+.
T Consensus 231 K~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 231 KEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999999875
No 3
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=3.2e-49 Score=358.49 Aligned_cols=232 Identities=30% Similarity=0.425 Sum_probs=189.7
Q ss_pred HHHHHHHHcCcccCChhHHHHHHcCCCCCC---CCCcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHHHHcCChHH
Q 021448 35 AVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111 (312)
Q Consensus 35 ~~~~le~~lgy~f~~~~Ll~~AlTh~S~~~---~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r~~lvsn~~ 111 (312)
.+.+||++|||+|+|++||.+||||+||.. ..||||||||||+||+++|++|||.+||++++|.|+.+|+.+|||++
T Consensus 14 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~ 93 (265)
T 3c4b_A 14 GFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTI 93 (265)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHH
Confidence 478899999999999999999999999975 35999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchHHHhhcchhhhHHHHHHHHHh--hcccc------------ccccCCccCCchhHHHHHHHHHHHHhhcC
Q 021448 112 LARVAVKHGFYKFVRHSAAALDDKVKEFAEAV--SQEDN------------TAVYGGSIKAPKVLADIVESIAAAIYVDI 177 (312)
Q Consensus 112 La~ia~~~gL~~~l~~~~~~~~~~~~~~~~~~--~~e~~------------~~~~~~~~~~~k~lad~fEAliGAiylD~ 177 (312)
||.+|.++||++|+++.++.+...+.+|+... +++.. ....++ ...+++++|+|||+|||||+|+
T Consensus 94 La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~laD~~EAliGAiylD~ 172 (265)
T 3c4b_A 94 FASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEED-IEVPKAMGDIFESLAGAIYMDS 172 (265)
T ss_dssp HHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CC-SCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcc-cccchHHHHHHHHHhhheeeec
Confidence 99999999999999988877777777776531 11100 001222 4678999999999999999999
Q ss_pred CcChHHHHHHHHHhhhhhcChhhhhcCCchhHHHHHHHHhcCCceeeEE--eeeCCeEEEEEEECCEEEEEeeccCHHHH
Q 021448 178 DFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKH--WRKNRKNIASVYVDGSFVASASSEQKEIA 255 (312)
Q Consensus 178 G~~~~~~~~~v~~ll~p~i~~~~l~~~~~p~~~L~e~~q~~~~~~~~~~--~~~g~~f~~~V~v~g~~~~~g~g~skk~A 255 (312)
|++.+.+++|+.+++.|.++..... +|++.|+++.+.......|.. ..+.+.|+|+|+++|+.+|+|.|.|||+|
T Consensus 173 G~~~~~~~~~i~~~~~~~i~~~~~~---~~k~~l~el~~~~~~~~~~~~~~~~~~~~f~v~v~v~~~~~~~G~G~SkK~A 249 (265)
T 3c4b_A 173 GMSLEVVWQVYYPMMQPLIEKFSAN---VPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIA 249 (265)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHCTTTEEECCCEECTTSCEEEEEEETTTEEEEEEESSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhhc---CCCCHHHHHHHhccCCceeeeccccCCCcEEEEEEEecceEEEEeeCCHHHH
Confidence 9988889999999999887543322 445555555544433222221 13568899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 021448 256 KLNAAREALEKLAQS 270 (312)
Q Consensus 256 e~~AA~~AL~~L~~~ 270 (312)
|++||+.||++|+..
T Consensus 250 eq~AA~~AL~~l~~~ 264 (265)
T 3c4b_A 250 KSAAARRALRSLKAN 264 (265)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999743
No 4
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=1.4e-48 Score=351.47 Aligned_cols=217 Identities=31% Similarity=0.391 Sum_probs=188.1
Q ss_pred HHHHHHHHHHcCcccCChhHHHHHHcCCCCCC----CC-----CcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHH
Q 021448 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTD----ST-----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLR 103 (312)
Q Consensus 33 ~~~~~~le~~lgy~f~~~~Ll~~AlTh~S~~~----~~-----~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r 103 (312)
.+.+.+|+++|||+|+|++||.+||||+|+.. .. +|||||||||+||+++|+++||.+||++++|.|+.+|
T Consensus 18 ~~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r 97 (252)
T 1o0w_A 18 RKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVK 97 (252)
T ss_dssp HHHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 35889999999999999999999999999864 23 8999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHcCchHHHhhcchhhhHHHHHHHHHhhccccccccCCccCCchhHHHHHHHHHHHHhhcCCcChHH
Q 021448 104 AANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQK 183 (312)
Q Consensus 104 ~~lvsn~~La~ia~~~gL~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~lad~fEAliGAiylD~G~~~~~ 183 (312)
+.+||+++|+.+|.++||++|++.++... ..++ ...+++++|+|||+|||||+|+|++ .
T Consensus 98 ~~lV~~~~la~~a~~lgL~~~l~~~~~e~------------------~~~~-~~~~~~lad~~EAliGAiyld~g~~--~ 156 (252)
T 1o0w_A 98 SAAASEEVLAMVSRKMNLGKFLFLGKGEE------------------KTGG-RDRDSILADAFEALLAAIYLDQGYE--K 156 (252)
T ss_dssp HHHTSHHHHHHHHHHTTHHHHCBCCHHHH------------------HTTG-GGCHHHHHHHHHHHHHHHHHHHCHH--H
T ss_pred HHHhCHHHHHHHHHHcCcHHhhccCchhh------------------hcCC-CCCccHHHhHHHHHHHHHHHcCCHH--H
Confidence 99999999999999999999999875321 0122 4568999999999999999999976 5
Q ss_pred HHHHHHHhhhhhcChhhh-hcCCchhHHHHHHHHhcCC-ceeeEEee-eC----CeEEEEEEECCEEEEEeeccCHHHHH
Q 021448 184 LWMIFRGLLEPIVTLEEL-QQQPQPVTLLFKLCQKNGK-QVDIKHWR-KN----RKNIASVYVDGSFVASASSEQKEIAK 256 (312)
Q Consensus 184 ~~~~v~~ll~p~i~~~~l-~~~~~p~~~L~e~~q~~~~-~~~~~~~~-~g----~~f~~~V~v~g~~~~~g~g~skk~Ae 256 (312)
+++|+..++.|.+..... ....|||+.||||||+.+. .+.|+... .| +.|+|.|+++|+.+|+|.|.|||+||
T Consensus 157 ~~~~i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Ae 236 (252)
T 1o0w_A 157 IKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAE 236 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHH
Confidence 678999999888764332 2246999999999999987 45687643 34 68999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 021448 257 LNAAREALEKLAQS 270 (312)
Q Consensus 257 ~~AA~~AL~~L~~~ 270 (312)
+.||+.||+.|...
T Consensus 237 q~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 237 KEAARIAYEKLLKE 250 (252)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999754
No 5
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.1e-48 Score=347.50 Aligned_cols=215 Identities=28% Similarity=0.308 Sum_probs=126.8
Q ss_pred HHHHHHHHcCcccCChhHHHHHHcCCCCCC----CCCcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHHHHcCChH
Q 021448 35 AVFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTE 110 (312)
Q Consensus 35 ~~~~le~~lgy~f~~~~Ll~~AlTh~S~~~----~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r~~lvsn~ 110 (312)
.+..||++|||+| |++||.+||||+|+.. ..+|||||||||+||+++|+++||.+||+.++|.|+.+|+.+|||+
T Consensus 6 ~l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~ 84 (242)
T 2a11_A 6 SRQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQ 84 (242)
T ss_dssp CCHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHH
Confidence 4678999999999 9999999999999863 4699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc---CchHHHhhcchhhhHHHHHHHHHhhccccccccCCccCCchhHHHHHHHHHHHHhhcCCcChHHHHHH
Q 021448 111 KLARVAVKH---GFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187 (312)
Q Consensus 111 ~La~ia~~~---gL~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~lad~fEAliGAiylD~G~~~~~~~~~ 187 (312)
+|+.+|.++ ||++|++.++... ..++ ...+++++|+|||+|||||+|+|++ .+++|
T Consensus 85 ~la~~a~~l~~~gL~~~l~~~~~e~------------------~~~~-~~~~~~lad~~EAliGAiyld~g~~--~~~~~ 143 (242)
T 2a11_A 85 ALADVARRLCAEGLGVHVLLGRGEA------------------NTGG-ADKSSILADGMESLLGAIYLQHGME--KAREV 143 (242)
T ss_dssp HHHHHHHHHSSSCSGGGCBCCHHHH------------------HTTG-GGCHHHHHHHHHHHHHHHHHHHCHH--HHHHH
T ss_pred HHHHHHHHhhhhChHHHhhcCchhh------------------hcCC-CCCccHHHHHHHHHHHHHHhcCCHH--HHHHH
Confidence 999999999 9999999875321 0122 4568999999999999999999976 56789
Q ss_pred HHHhhhhhcChhhhh-cCCchhHHHHHHHHhcCCc-eeeEEeeeC----CeEEEEEEECCEEEEEeeccCHHHHHHHHHH
Q 021448 188 FRGLLEPIVTLEELQ-QQPQPVTLLFKLCQKNGKQ-VDIKHWRKN----RKNIASVYVDGSFVASASSEQKEIAKLNAAR 261 (312)
Q Consensus 188 v~~ll~p~i~~~~l~-~~~~p~~~L~e~~q~~~~~-~~~~~~~~g----~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~ 261 (312)
+..++.|.+...... ...|||+.||||||+++.. +.|+....| +.|+|.|+++|+.+|+|.|.|||+||++||+
T Consensus 144 i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~ 223 (242)
T 2a11_A 144 ILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAA 223 (242)
T ss_dssp HHHHTHHHHHHTTC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHH
Confidence 999998877543221 2459999999999999875 567765443 5899999999999999999999999999999
Q ss_pred HHHHHHhhcC
Q 021448 262 EALEKLAQSM 271 (312)
Q Consensus 262 ~AL~~L~~~~ 271 (312)
.||+.|....
T Consensus 224 ~AL~~L~~~~ 233 (242)
T 2a11_A 224 AAWKALEVLD 233 (242)
T ss_dssp ----------
T ss_pred HHHHHHhhcc
Confidence 9999998654
No 6
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=1.7e-46 Score=349.57 Aligned_cols=220 Identities=22% Similarity=0.235 Sum_probs=122.4
Q ss_pred HHHHHHHcCcc-cCChhHHHHHHcCCCCCC-----------CCCcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHH
Q 021448 36 VFYVENIINYN-FKNKRLLEEALTHSSYTD-----------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLR 103 (312)
Q Consensus 36 ~~~le~~lgy~-f~~~~Ll~~AlTh~S~~~-----------~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r 103 (312)
...+|++|||+ |+|++||.+||||+|+.. ..+|||||||||+||+++++++||.+||++++|.|+.+|
T Consensus 85 ~~~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr 164 (341)
T 3rv0_A 85 NTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMK 164 (341)
T ss_dssp CCTTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhHHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHH
Confidence 45689999999 999999999999999975 248999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHcCchHHHhhcchhhhHHHHHHHHHhhccccccccCCccCCchhHHHHHHHHHHHHhhcC---CcC
Q 021448 104 AANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI---DFD 180 (312)
Q Consensus 104 ~~lvsn~~La~ia~~~gL~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~lad~fEAliGAiylD~---G~~ 180 (312)
+.+||+.+|+.+|.++||+++++++.+. ++ .++....+++++|+|||+|||||+|+ |++
T Consensus 165 ~~lVs~~~La~iA~~lgL~~~l~~~~g~-------------~~-----~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~ 226 (341)
T 3rv0_A 165 ESIVNNNNLFDWSTKLNFTKRLQGNIAT-------------PT-----RVVKDKMSKRYADCVEAYIGALVIDRFGTEFL 226 (341)
T ss_dssp HHHHSHHHHHHHHHHTTTTTTTCCSSCC-------------C---------CCHHHHHHHHHHHHHHHHHHHHHCSSTTH
T ss_pred HHHhCHHHHHHHHHHcCcHHHhhhcCCh-------------hh-----hccCCccccHHHHHHHHHHHHHhhcCccCCHH
Confidence 9999999999999999999999964211 00 00112357999999999999999998 555
Q ss_pred hHHHHHHHHHhhhhhcChhhh-----hcCCchhHHHHHHHHhcCC--ceeeEEeeeCCeEEEEEEECCEEEEEeeccCHH
Q 021448 181 LQKLWMIFRGLLEPIVTLEEL-----QQQPQPVTLLFKLCQKNGK--QVDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253 (312)
Q Consensus 181 ~~~~~~~v~~ll~p~i~~~~l-----~~~~~p~~~L~e~~q~~~~--~~~~~~~~~g~~f~~~V~v~g~~~~~g~g~skk 253 (312)
.+++|+..++.|.+..... ....|||+.||||||+++. .+.|+.....+.|+|+|+++|+.+|+|.|.|||
T Consensus 227 --~a~~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~GpF~v~v~i~~~~~g~G~G~SKK 304 (341)
T 3rv0_A 227 --DIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPPFRVEVKIGDILLDEAEGNSIR 304 (341)
T ss_dssp --HHHHHHHHHTHHHHHCGGGC----------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCCEEEEEEECCEEEEEEEeCCHH
Confidence 5678899999887643221 1246999999999999875 346876554445999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcc
Q 021448 254 IAKLNAAREALEKLAQSMPVNC 275 (312)
Q Consensus 254 ~Ae~~AA~~AL~~L~~~~~~~~ 275 (312)
+||++||+.||+.|+.......
T Consensus 305 ~AEq~AA~~AL~~L~~~~k~~~ 326 (341)
T 3rv0_A 305 EAEHRAAMKVLENDELLRKYSV 326 (341)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhhhhhhhhh
Confidence 9999999999999987644433
No 7
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=7e-37 Score=258.78 Aligned_cols=142 Identities=35% Similarity=0.515 Sum_probs=128.9
Q ss_pred HHHHHHHHcCcccCChhHHHHHHcCCCCCCCCCcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHHHHcCChHHHHH
Q 021448 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114 (312)
Q Consensus 35 ~~~~le~~lgy~f~~~~Ll~~AlTh~S~~~~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r~~lvsn~~La~ 114 (312)
.+.+||++|||+|+|++|+.+||||+|+....+|||||||||+||+++|+++||.+||+.++|.|+.+|+.+|||++|+.
T Consensus 27 ~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~La~ 106 (170)
T 3o2r_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAK 106 (170)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTTCCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHHHHH
Confidence 58999999999999999999999999998778999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCchHHHhhcchhhhHHHHHHHHHhhccccccccCCccCCchhHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhh
Q 021448 115 VAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194 (312)
Q Consensus 115 ia~~~gL~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~lad~fEAliGAiylD~G~~~~~~~~~v~~ll~p 194 (312)
+|.++||+++++.++... ..++ ...++++||+|||+|||||+|+|++ .+++|+..++.|
T Consensus 107 ia~~lgL~~~l~~~~~~~------------------~~~~-~~~~~ilad~fEAliGAiylD~G~~--~a~~~i~~~~~~ 165 (170)
T 3o2r_A 107 IANSLNLGDFILMSVAEE------------------NNGG-KEKPSILSDALEAIIGAIHLEAGFE--FAKTIALRLIEK 165 (170)
T ss_dssp HHHHTTGGGTCBCCHHHH------------------HTTG-GGCHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHH
T ss_pred HHHHcCcHHhhhcCcchh------------------hcCC-CCcchHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHH
Confidence 999999999999875421 0122 4578999999999999999999987 566899999998
Q ss_pred hcC
Q 021448 195 IVT 197 (312)
Q Consensus 195 ~i~ 197 (312)
.++
T Consensus 166 ~~~ 168 (170)
T 3o2r_A 166 NFP 168 (170)
T ss_dssp HCT
T ss_pred HHh
Confidence 774
No 8
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.6e-34 Score=254.43 Aligned_cols=144 Identities=25% Similarity=0.327 Sum_probs=121.7
Q ss_pred HHHHHHcCcc-cCChhHHHHHHcCCCCCC-----------CCCcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHHH
Q 021448 37 FYVENIINYN-FKNKRLLEEALTHSSYTD-----------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRA 104 (312)
Q Consensus 37 ~~le~~lgy~-f~~~~Ll~~AlTh~S~~~-----------~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r~ 104 (312)
..+|++|||+ |+|++||.+||||+|+.. ..+|||||||||+||+++++++||.+||+.++|.|+.+|+
T Consensus 86 ~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs 165 (246)
T 3rv1_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (246)
T ss_dssp CGGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 5689999999 999999999999999974 3589999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHcCchHHHhhcchhhhHHHHHHHHHhhccccccccCCccCCchhHHHHHHHHHHHHhhcC-CcChHH
Q 021448 105 ANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQK 183 (312)
Q Consensus 105 ~lvsn~~La~ia~~~gL~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~lad~fEAliGAiylD~-G~~~~~ 183 (312)
.+|||++|+.+|.++||+++++++.+. ++ .++....++++||+|||+|||||+|+ |.+...
T Consensus 166 ~lVsn~~La~iA~~lgL~~~l~~~~g~-------------~~-----~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~ 227 (246)
T 3rv1_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIAT-------------PT-----RVVKDKMSKRYADCVQAYIGALVIDRFGTEFLD 227 (246)
T ss_dssp HHHSHHHHHHHHHHTTSHHHHCSSCC-----------------------------CHHHHHHHHHHHHHHHHHCSSTTHH
T ss_pred HHhCHHHHHHHHHHCCcHHHHhhcCCH-------------hh-----hccCcccccHHHHHHHHHHHHHhHcCCCCCHHH
Confidence 999999999999999999999964221 00 00012467999999999999999999 878888
Q ss_pred HHHHHHHhhhhhcCh
Q 021448 184 LWMIFRGLLEPIVTL 198 (312)
Q Consensus 184 ~~~~v~~ll~p~i~~ 198 (312)
+++|+..++.|.++.
T Consensus 228 v~~~l~~L~~p~l~e 242 (246)
T 3rv1_A 228 IKEWLEELSEKKLAK 242 (246)
T ss_dssp HHHHHHHHTHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 9
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.96 E-value=3.7e-29 Score=253.77 Aligned_cols=133 Identities=28% Similarity=0.337 Sum_probs=122.4
Q ss_pred HHHHHHHHHcCcccCC--------------------------hhHHHHHHcCCCCCCCCCcchhhhhhHHhhHHHHHHHH
Q 021448 34 DAVFYVENIINYNFKN--------------------------KRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87 (312)
Q Consensus 34 ~~~~~le~~lgy~f~~--------------------------~~Ll~~AlTh~S~~~~~~~erLEfLGDavL~~~v~~~l 87 (312)
..+..+|++|||+|+| ++||.+||||+| |||||||||+||+++|++||
T Consensus 593 ~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S------neRLEfLGDaVL~l~vs~~L 666 (756)
T 2qvw_A 593 KVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV------YQKLELLGDAFLKCSLALHL 666 (756)
T ss_dssp HHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG------GHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc------chHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999 899999999999 89999999999999999999
Q ss_pred HHHCCCCCccchhHHHHHcCChHHHHHHHHHcC--chHHHhhcchhhhHHHHHHHHHhhccccccccCCccCCchhHHHH
Q 021448 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHG--FYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADI 165 (312)
Q Consensus 88 ~~~~p~~~~g~Lt~~r~~lvsn~~La~ia~~~g--L~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~lad~ 165 (312)
|.+||++++|.|+.+|+.+|||++|+.+|.++| |++|++.++.+ . ...++++||+
T Consensus 667 ~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e---------------~--------~~~~kilaD~ 723 (756)
T 2qvw_A 667 HALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPK---------------I--------QPDSKVYGDT 723 (756)
T ss_dssp HHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTT---------------C--------CTTCSHHHHH
T ss_pred HHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchh---------------h--------cCCccHHHHH
Confidence 999999999999999999999999999999999 99999987532 1 2468999999
Q ss_pred HHHHHHHHhhcCCcChHHHHHHHHHhhhhhcC
Q 021448 166 VESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT 197 (312)
Q Consensus 166 fEAliGAiylD~G~~~~~~~~~v~~ll~p~i~ 197 (312)
|||+|||||+|+|++ .+++|+.+++.|.++
T Consensus 724 ~EAliGAiylD~G~~--~a~~~v~~~~~~~l~ 753 (756)
T 2qvw_A 724 FEAILAAILLACGEE--AAGAFVREHVLPQVV 753 (756)
T ss_dssp HHHHHHHHHHHHCHH--HHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHhCCHH--HHHHHHHHHHHHHhh
Confidence 999999999999986 567899999988775
No 10
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.95 E-value=1.4e-29 Score=256.96 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=135.4
Q ss_pred cCCCCCCCCCcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHHHHcCChHHHHHHHHHcCchHHHhhcchhhhHHHH
Q 021448 58 THSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK 137 (312)
Q Consensus 58 Th~S~~~~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r~~lvsn~~La~ia~~~gL~~~l~~~~~~~~~~~~ 137 (312)
||+|+....||||||||||+||+++|+++||.+||++++|.|+.+|+.+|||++|+.+|.++||++|++.+...
T Consensus 324 Th~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e------ 397 (756)
T 2qvw_A 324 GPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNL------ 397 (756)
T ss_dssp BGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC------
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCC------
Confidence 34444333589999999999999999999999999999999999999999999999999999999999877431
Q ss_pred HHHHHhhccccccccCCccCCchhHHHHHHHHHHHHhhc-CCcChHHHHHHHHHhhhhhcChhhh-hcCCch-hHHHHHH
Q 021448 138 EFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD-IDFDLQKLWMIFRGLLEPIVTLEEL-QQQPQP-VTLLFKL 214 (312)
Q Consensus 138 ~~~~~~~~e~~~~~~~~~~~~~k~lad~fEAliGAiylD-~G~~~~~~~~~v~~ll~p~i~~~~l-~~~~~p-~~~L~e~ 214 (312)
...++++||+|||+|||||+| +|++ .+++|+.+++.+.+..... ....|| |+.||||
T Consensus 398 ------------------~~~~~ilaD~~EAliGAiylD~~G~~--~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~ 457 (756)
T 2qvw_A 398 ------------------VAKSKTWADMYEEIVGSIFTGPNGIY--GCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRV 457 (756)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHSTTHHH--HHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHH
T ss_pred ------------------CCcccHHHhHHHHHhCcccccccChH--HHHHHHHHHHHhhhhcccccccccCchHHHHHHH
Confidence 135789999999999999999 9987 4568899999888754332 234689 9999999
Q ss_pred HHhcCCceeeEEeeeCCeEEEEEEECCEEEEEeeccCHHHHH---------HHHHHHHHHHHhhcCC
Q 021448 215 CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK---------LNAAREALEKLAQSMP 272 (312)
Q Consensus 215 ~q~~~~~~~~~~~~~g~~f~~~V~v~g~~~~~g~g~skk~Ae---------~~AA~~AL~~L~~~~~ 272 (312)
+|.+ .++.|.+.+.+.|+ .+||+.||++|.+.++
T Consensus 458 ~q~~------------------------~ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~~ 500 (756)
T 2qvw_A 458 CMGE------------------------AGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPA 500 (756)
T ss_dssp HTSC------------------------CCHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSCH
T ss_pred Hhcc------------------------chhhhhhhhhhHHhhhccccchhhHHHHHHHHhhcccch
Confidence 9844 34556677777777 6899999999887654
No 11
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.85 E-value=3.1e-21 Score=156.28 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=90.2
Q ss_pred CCCcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHHHHcCChHHHHHHHHHc----Cch----HHHhhcchhhhHHH
Q 021448 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKH----GFY----KFVRHSAAALDDKV 136 (312)
Q Consensus 65 ~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r~~lvsn~~La~ia~~~----gL~----~~l~~~~~~~~~~~ 136 (312)
..|.+|||||||||++++|++|||.+ |..++|.|+++|+.+||.++++.++..+ +|. ++++.+..
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn------ 81 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRN------ 81 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTC------
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCC------
Confidence 46899999999999999999999999 8889999999999999999999999999 997 68877642
Q ss_pred HHHHHHhhccccccccCCccCCchh----HHHHHHHHHHHHhhcCCcChHHHHHHHHHhhh
Q 021448 137 KEFAEAVSQEDNTAVYGGSIKAPKV----LADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193 (312)
Q Consensus 137 ~~~~~~~~~e~~~~~~~~~~~~~k~----lad~fEAliGAiylD~G~~~~~~~~~v~~ll~ 193 (312)
+. ..++ ....++ +||+|||+|||||+|+|++ ++.+|+..++.
T Consensus 82 ---------~~---~~~~-~k~~si~~Yr~A~~fEALiGalYLd~g~e--r~~~~i~~~~~ 127 (138)
T 1u61_A 82 ---------AN---SGTV-PKNTDVQTYRHSTAFEALIGYHHLLNNRE--RLDEIVYKAIA 127 (138)
T ss_dssp ---------CC---SSCC-CTTCCHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHH
T ss_pred ---------cc---cCCC-CCCCchhhhhhhhHHHHHHHHHHHCCCHH--HHHHHHHHHHH
Confidence 21 1122 456788 9999999999999999877 44577776663
No 12
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.79 E-value=1.4e-19 Score=146.21 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=85.7
Q ss_pred CCCcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHHHHcCChHHHHHHHHHcC--ch----HHHhhcchhhhHHHHH
Q 021448 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHG--FY----KFVRHSAAALDDKVKE 138 (312)
Q Consensus 65 ~~~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r~~lvsn~~La~ia~~~g--L~----~~l~~~~~~~~~~~~~ 138 (312)
..|.+|||||||||++++|+++|+.+ |. ++|.|+++++.+||.+++|.++..++ |. .+++.+.
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGr--------- 80 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAK--------- 80 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHH---------
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcc---------
Confidence 46889999999999999999999998 88 99999999999999999999999985 44 4444332
Q ss_pred HHHHhhccccccccCCccCCchh----HHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhhhc
Q 021448 139 FAEAVSQEDNTAVYGGSIKAPKV----LADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196 (312)
Q Consensus 139 ~~~~~~~e~~~~~~~~~~~~~k~----lad~fEAliGAiylD~G~~~~~~~~~v~~ll~p~i 196 (312)
+.. .++..++.++ +||.|||+|||+|+|+|++ ++.+|+..++.-.+
T Consensus 81 ------na~----~~~~~k~~si~~Y~~At~fEALiGaLYLd~~~e--rl~~ll~~~~~~~~ 130 (137)
T 2gsl_A 81 ------NSN----IKTFPRSCTVMEYKEATALEAIIGAMYLLKKEE--EIKKIINIVIKGEL 130 (137)
T ss_dssp ------C------CCSCCSSSCHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHTTC
T ss_pred ------ccc----CCCCCCCCChHHHHHhhHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHH
Confidence 111 1111345564 9999999999999999877 55577777765443
No 13
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.62 E-value=2.3e-16 Score=134.31 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=82.1
Q ss_pred CCchhHHHHHHHHhcCCceeeEEee-eC----CeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCCCcccc-
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWR-KN----RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDV- 277 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~-~g----~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~~~~~~- 277 (312)
..||++.||||||+++..+.|+... .| +.|+|.|+|+|..+++|.|.|||+||+.||+.||+.|..........
T Consensus 12 ~~n~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~~ 91 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPLL 91 (179)
T ss_dssp SCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSCCSCSS
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence 3589999999999999887888653 33 68999999999999999999999999999999999998654321100
Q ss_pred cCcCCCCchhHhhHHHHHHHHHHHhcCCCCCCCCC
Q 021448 278 CEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
...+... .+....+|++.|+|||++++|++ .|+
T Consensus 92 ~~~~~~~-e~~~~~n~~~~L~E~~qk~~~~~-~Y~ 124 (179)
T 1qu6_A 92 LTTTNSS-EGLSMGNYIGLINRIAQKKRLTV-NYE 124 (179)
T ss_dssp CCCSCSS-CCCCCCCCHHHHHHHHHHSCCEE-EEE
T ss_pred CCCCCcc-cccCCCCHHHHHHHHHHhcCCcc-eEE
Confidence 0011110 11134589999999999999987 663
No 14
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.56 E-value=2.5e-14 Score=126.44 Aligned_cols=108 Identities=26% Similarity=0.224 Sum_probs=81.1
Q ss_pred CCchhHHHHHHHHhcCCc-eeeEEee-eC--CeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCCCcccc--
Q 021448 204 QPQPVTLLFKLCQKNGKQ-VDIKHWR-KN--RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDV-- 277 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~-~~~~~~~-~g--~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~~~~~~-- 277 (312)
..||++.||||||+++.. +.|+... .| +.|+|.|+|+|..+|+|.|.|||+||+.||+.||+.|....+.....
T Consensus 21 ~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~~ 100 (232)
T 2yt4_A 21 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEEK 100 (232)
T ss_dssp TSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTTTTTC-----
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhhccccCCccc
Confidence 469999999999999885 5688654 34 78999999999999999999999999999999999998743221100
Q ss_pred ------c-Cc---C-CCCch-----hHhhHHHHHHHHHHHhcCCCCCCCCC
Q 021448 278 ------C-EI---F-DDIDE-----KFEIEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 278 ------~-~~---~-~~~~~-----~~~~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
. .+ . .+... .....+++..||| |.+++|++|.|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~ 150 (232)
T 2yt4_A 101 PKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTS 150 (232)
T ss_dssp ---CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEE
T ss_pred cccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceE
Confidence 0 00 0 01100 0112288999999 999999999984
No 15
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.55 E-value=3.7e-14 Score=106.50 Aligned_cols=73 Identities=23% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCchhHHHHHHHHhcCCceeeEEeee----CC-eEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCCCcccc
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWRK----NR-KNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDV 277 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~~----g~-~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~~~~~~ 277 (312)
..|||+.||||||+++..+.|+ ... .+ .|+|.|+|+|+.+++|.|.|||+||+.||+.||+.|...++....+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~~~~ 82 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSVNYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAGT 82 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCEEEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCCCCCC
T ss_pred CCCHHHHHHHHHHHcCCCCeeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3599999999999999888887 433 35 6999999999999999999999999999999999999876665553
No 16
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=107.80 Aligned_cols=71 Identities=21% Similarity=0.201 Sum_probs=56.7
Q ss_pred CCchhHHHHHHHHhcCCceeeEEee-e----CCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCCCcc
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWR-K----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNC 275 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~-~----g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~~~~ 275 (312)
..|||+.||||||+++..+.|+... . .+.|+|.|+|+|. +++|.|.|||+||+.||+.||+.|.....+..
T Consensus 13 ~kd~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~~p 88 (90)
T 3llh_A 13 GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGSMLEP 88 (90)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC-------
T ss_pred CCCHHHHHHHHHHhcCCCCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 4699999999999998777788643 3 3689999999997 79999999999999999999999988766543
No 17
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.53 E-value=5e-14 Score=105.67 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=57.9
Q ss_pred CCchhHHHHHHHHhcCCc-eeeEEee-eC----CeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCC
Q 021448 204 QPQPVTLLFKLCQKNGKQ-VDIKHWR-KN----RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~-~~~~~~~-~g----~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~ 272 (312)
..|||+.||||||+.+.. +.|++.. .| +.|+|.|+|+|. +++|.|.|||+||+.||+.||+.|...++
T Consensus 14 ~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p~ 87 (88)
T 3adl_A 14 GSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVPL 87 (88)
T ss_dssp TCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccCC
Confidence 459999999999999986 5687643 33 789999999998 99999999999999999999999986553
No 18
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.52 E-value=4.6e-14 Score=102.34 Aligned_cols=64 Identities=22% Similarity=0.108 Sum_probs=57.5
Q ss_pred CchhHHHHHHHHhcCCce-eeEEeeeC----CeEEEEEEECCEEEEEeec-cCHHHHHHHHHHHHHHHHh
Q 021448 205 PQPVTLLFKLCQKNGKQV-DIKHWRKN----RKNIASVYVDGSFVASASS-EQKEIAKLNAAREALEKLA 268 (312)
Q Consensus 205 ~~p~~~L~e~~q~~~~~~-~~~~~~~g----~~f~~~V~v~g~~~~~g~g-~skk~Ae~~AA~~AL~~L~ 268 (312)
.|||+.||||||+++..+ .|++...| +.|+|.|+|+|..+++|.| .|||+||+.||+.||+.|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 489999999999999864 58766544 6899999999999999999 9999999999999999885
No 19
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.51 E-value=8.4e-14 Score=103.65 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=58.9
Q ss_pred CCchhHHHHHHHHhcCCceeeEEee-----eCCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCC
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~-----~g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~ 272 (312)
..|||+.||||||+++..+.|++.. +.+.|+|.|+|+| .+++|.|.|||+||+.||+.||+.|.....
T Consensus 7 ~~d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~ 79 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANAS 79 (84)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcccc
Confidence 4699999999999998666787643 3478999999999 899999999999999999999999975443
No 20
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.51 E-value=4.4e-14 Score=103.20 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=57.4
Q ss_pred CchhHHHHHHHHhcCCce-eeEEee-e----CCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhh
Q 021448 205 PQPVTLLFKLCQKNGKQV-DIKHWR-K----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (312)
Q Consensus 205 ~~p~~~L~e~~q~~~~~~-~~~~~~-~----g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~ 269 (312)
.|||+.||||||+++..+ .|++.. . .+.|+|.|+|+|..++.|.|.|||+||+.||+.||+.|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 489999999999999864 687643 3 3689999999999999999999999999999999999864
No 21
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.51 E-value=7.6e-14 Score=100.04 Aligned_cols=62 Identities=26% Similarity=0.273 Sum_probs=55.0
Q ss_pred chhHHHHHHHHhcCCc-eeeEEee-eC----CeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHh
Q 021448 206 QPVTLLFKLCQKNGKQ-VDIKHWR-KN----RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268 (312)
Q Consensus 206 ~p~~~L~e~~q~~~~~-~~~~~~~-~g----~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~ 268 (312)
.|++.||||||+++.. +.|+... .| +.|+|.|+++|. +++|.|.|||+||+.||+.||..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 3899999999999986 4687643 34 789999999998 9999999999999999999999986
No 22
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.50 E-value=1.2e-13 Score=103.79 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=58.6
Q ss_pred CCchhHHHHHHHHhcCCc-eeeEEee-----eCCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcC
Q 021448 204 QPQPVTLLFKLCQKNGKQ-VDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~-~~~~~~~-----~g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~ 271 (312)
..|||+.||||||++++. +.|++.. +.+.|+|.|+|+|. +++|.|.|||+||+.||+.||+.|...+
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~s 87 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGPS 87 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 459999999999999986 5687643 34789999999998 9999999999999999999999997544
No 23
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.49 E-value=5.5e-14 Score=107.39 Aligned_cols=71 Identities=23% Similarity=0.198 Sum_probs=62.2
Q ss_pred CCchhHHHHHHHHhcCCceeeEEee-e----CCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCCCc
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWR-K----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVN 274 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~-~----g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~~~ 274 (312)
..|||+.||||||+++..+.|++.. . .+.|+|.|+|+|+.+++|.|.|||+||+.||+.||+.|.......
T Consensus 13 ~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~ 88 (97)
T 1x49_A 13 PGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENKVD 88 (97)
T ss_dssp TTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4589999999999999887887543 3 478999999999999999999999999999999999998665553
No 24
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.48 E-value=4.1e-14 Score=106.65 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=57.8
Q ss_pred CchhHHHHHHHHhcCCceeeEEeeeC----CeEEEEEEECCE-EEEEeeccCHHHHHHHHHHHHHHHHhhc
Q 021448 205 PQPVTLLFKLCQKNGKQVDIKHWRKN----RKNIASVYVDGS-FVASASSEQKEIAKLNAAREALEKLAQS 270 (312)
Q Consensus 205 ~~p~~~L~e~~q~~~~~~~~~~~~~g----~~f~~~V~v~g~-~~~~g~g~skk~Ae~~AA~~AL~~L~~~ 270 (312)
.|||+.||||+|+.+..+.|++...| +.|+|.|+|+|. .+|+|.|.|||+||+.||+.||..|.-.
T Consensus 6 ~D~KT~LQE~~Q~~~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l 76 (94)
T 1t4n_A 6 MNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML 76 (94)
T ss_dssp HHHHHHHHHHTCSSSSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred CCchHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 38999999999998656678875544 689999999999 9999999999999999999999987643
No 25
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.47 E-value=3e-14 Score=104.14 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=57.7
Q ss_pred CCchhHHHHHHHHhcCCceeeEEee-e----CCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhh
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWR-K----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~-~----g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~ 269 (312)
..||++.||||||+++..+.|.... . .+.|+|.|+++| .+++|.|.|||+||+.||+.||+.|..
T Consensus 6 ~~d~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 3599999999999999887787643 3 378999999999 899999999999999999999999864
No 26
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.46 E-value=3.2e-13 Score=101.54 Aligned_cols=65 Identities=28% Similarity=0.330 Sum_probs=57.0
Q ss_pred CCchhHHHHHHHHhcCCc-eeeEEee-----eCCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhh
Q 021448 204 QPQPVTLLFKLCQKNGKQ-VDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~-~~~~~~~-----~g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~ 269 (312)
..|||+.||||||+++.. +.|++.. +.+.|+|.|+|+|. +++|.|.|||+||+.||+.||+.|..
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 359999999999999986 5687643 34789999999996 89999999999999999999999963
No 27
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.45 E-value=8.7e-14 Score=103.72 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=55.4
Q ss_pred CchhHHHHHHHHhc-----CC-ceeeEEee-eC----CeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhh
Q 021448 205 PQPVTLLFKLCQKN-----GK-QVDIKHWR-KN----RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (312)
Q Consensus 205 ~~p~~~L~e~~q~~-----~~-~~~~~~~~-~g----~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~ 269 (312)
.|||+.||||||+. +. .+.|++.. .| +.|+|.|+|+|..+|+|.|.|||+||+.||+.||+.|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 38999999999984 33 45687643 33 789999999999999999999999999999999998754
No 28
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.44 E-value=3.2e-13 Score=104.31 Aligned_cols=70 Identities=21% Similarity=0.090 Sum_probs=58.5
Q ss_pred cCCchhHHHHHHHHhcCCce-eeEEeeeC----CeEEEEEEECCEEEEEeec-cCHHHHHHHHHHHHHHHHhhcCC
Q 021448 203 QQPQPVTLLFKLCQKNGKQV-DIKHWRKN----RKNIASVYVDGSFVASASS-EQKEIAKLNAAREALEKLAQSMP 272 (312)
Q Consensus 203 ~~~~p~~~L~e~~q~~~~~~-~~~~~~~g----~~f~~~V~v~g~~~~~g~g-~skk~Ae~~AA~~AL~~L~~~~~ 272 (312)
...|||+.||||||+++..+ .|++...| +.|+|.|+|+|..+++|.| .|||+||+.||+.||+.|...+.
T Consensus 15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~ 90 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSE 90 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence 34699999999999999864 68766544 6899999999999999999 99999999999999999986544
No 29
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.44 E-value=5.2e-13 Score=102.17 Aligned_cols=66 Identities=30% Similarity=0.287 Sum_probs=58.9
Q ss_pred CCchhHHHHHHHHhcCCc-eeeEEee-eC--CeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhh
Q 021448 204 QPQPVTLLFKLCQKNGKQ-VDIKHWR-KN--RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~-~~~~~~~-~g--~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~ 269 (312)
..|||+.||||||+++.. +.|++.. .| +.|+|.|+|+|..+++|.|.|||+||++||+.||+.|..
T Consensus 15 ~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (98)
T 1x47_A 15 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIP 84 (98)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 469999999999999986 4687654 34 789999999999999999999999999999999999973
No 30
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.42 E-value=3.5e-13 Score=103.26 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=59.3
Q ss_pred CCchhHHHHHHHHhcCCceeeEEeee----CCeEEEEEEECC-EEEEEeeccCHHHHHHHHHHHHHHHHhhcCC
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWRK----NRKNIASVYVDG-SFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~~----g~~f~~~V~v~g-~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~ 272 (312)
..|||+.||||||++...+.|++... .+.|+|.|+|+| ..+++|.|.|||+||+.||+.||+.|.....
T Consensus 5 ~~d~Kt~LqE~~Qk~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 78 (99)
T 1whq_A 5 SSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp CCSSHHHHHHHHHHTTCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHCCCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 35999999999999944566876433 468999999999 7999999999999999999999999987654
No 31
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.42 E-value=2.9e-13 Score=105.56 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=57.9
Q ss_pred CchhHHHHHHHHhcCCceeeEEeeeC----CeEEEEEEECCE-EEEEeeccCHHHHHHHHHHHHHHHHhhcC
Q 021448 205 PQPVTLLFKLCQKNGKQVDIKHWRKN----RKNIASVYVDGS-FVASASSEQKEIAKLNAAREALEKLAQSM 271 (312)
Q Consensus 205 ~~p~~~L~e~~q~~~~~~~~~~~~~g----~~f~~~V~v~g~-~~~~g~g~skk~Ae~~AA~~AL~~L~~~~ 271 (312)
.|||+.||||+|..+..+.|.+...| +.|+|.|+|+|. .+|+|.|.|||+||++||+.||..+....
T Consensus 8 ~D~KT~LQE~~Q~~~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~ 79 (117)
T 1t4o_A 8 MNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLD 79 (117)
T ss_dssp TTHHHHHHHHHCCGGGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHH
T ss_pred CCchHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999996545678876545 589999999999 99999999999999999999999866544
No 32
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.40 E-value=9.8e-13 Score=95.27 Aligned_cols=65 Identities=26% Similarity=0.252 Sum_probs=55.1
Q ss_pred CCchhHHHHHHHHhcCCceeeEEee-----eCCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhc
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~-----~g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~ 270 (312)
..|||+.||||||. ...+.|.+.. +.+.|+|.|.|+|..+ +|.|.|||+||+.||+.||+.|...
T Consensus 3 ~~d~Ks~Lqe~~q~-~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSSHHHHHHHHHH-CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcC-CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhcC
Confidence 35899999999996 4455687643 3479999999999886 9999999999999999999999854
No 33
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=97.82 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=59.9
Q ss_pred CchhHHHHHHHHhcCCceeeEEee-e----CCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCCCccc
Q 021448 205 PQPVTLLFKLCQKNGKQVDIKHWR-K----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276 (312)
Q Consensus 205 ~~p~~~L~e~~q~~~~~~~~~~~~-~----g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~~~~~ 276 (312)
.++++.||||||+++ .+.|++.. . .+.|+|.|.|+|..+ +|.|.|||+||+.||+.||+.|....+...+
T Consensus 14 ~~~K~~LqEl~Qk~~-~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~~~~~ 88 (91)
T 2l33_A 14 KHGKNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTPLALD 88 (91)
T ss_dssp SSTTCHHHHHHHHCS-SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCCCCCSS
T ss_pred cCCCCHHHHHHHhCC-CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcCCcccc
Confidence 379999999999998 77787643 3 368999999999885 9999999999999999999999876665544
No 34
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.38 E-value=1.6e-12 Score=102.04 Aligned_cols=70 Identities=20% Similarity=0.149 Sum_probs=60.1
Q ss_pred CchhHHHHHHHHhcCCceeeEEeee----CCeEEEEEEE-----CCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCCCc
Q 021448 205 PQPVTLLFKLCQKNGKQVDIKHWRK----NRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKLAQSMPVN 274 (312)
Q Consensus 205 ~~p~~~L~e~~q~~~~~~~~~~~~~----g~~f~~~V~v-----~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~~~ 274 (312)
.|||+.||||||+++..+.|++... .+.|+|.|+| +|+.+++|.|.|||+||+.||+.||+.|....-+.
T Consensus 26 ~d~Kt~LqE~~Qk~~~~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ie 104 (113)
T 1uil_A 26 ENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVIE 104 (113)
T ss_dssp HHHHHHHHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHCCCCCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4899999999999998666884333 4799999999 68899999999999999999999999998765433
No 35
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.38 E-value=1.4e-12 Score=104.33 Aligned_cols=68 Identities=19% Similarity=0.133 Sum_probs=59.9
Q ss_pred CCchhHHHHHHHHhcCCce-eeEEee--eCCeEEEEEEECCEEEEEeec-cCHHHHHHHHHHHHHHHHhhcC
Q 021448 204 QPQPVTLLFKLCQKNGKQV-DIKHWR--KNRKNIASVYVDGSFVASASS-EQKEIAKLNAAREALEKLAQSM 271 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~-~~~~~~--~g~~f~~~V~v~g~~~~~g~g-~skk~Ae~~AA~~AL~~L~~~~ 271 (312)
..|||+.||||||+++... .|++.. +.+.|+|.|+|+|+.+++|.| .|||+||++||+.||+.|....
T Consensus 25 ~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~~ 96 (128)
T 1whn_A 25 QITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPE 96 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeecCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhccc
Confidence 4699999999999999865 576543 568999999999999999999 9999999999999999997443
No 36
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.36 E-value=3.2e-12 Score=97.64 Aligned_cols=67 Identities=25% Similarity=0.222 Sum_probs=57.0
Q ss_pred CCchhHHHHHHHHhcCCceeeEEee-----eCCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCC
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~-----~g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~ 272 (312)
..|||+.||||||++ ..+.|++.. +.+.|+|.|+|+|..+ +|.|.|||+||+.||+.||+.|....+
T Consensus 15 ~~d~Kt~LqE~~Q~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~~~ 86 (97)
T 2dmy_A 15 AIDLMNALMRLNQIR-PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYPTG 86 (97)
T ss_dssp SSSCTHHHHHHHHHS-CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCCCS
T ss_pred CCCHHHHHHHHHhcC-CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCCCCc
Confidence 459999999999996 455687653 3479999999999987 999999999999999999999975443
No 37
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.29 E-value=7.5e-12 Score=97.88 Aligned_cols=64 Identities=25% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCchhHHHHHHHHhcCCceeeEEee-e----CCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCC
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWR-K----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~-~----g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~ 272 (312)
..|||+.||||||. +.|++.. . .+.|+|.|+|+|+.+ +|.|.|||+||++||+.||+.|...+.
T Consensus 36 ~kd~Ks~LQE~~q~----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~ 104 (114)
T 2ljh_A 36 PKNTVAMLNELRHG----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKD 104 (114)
T ss_dssp CSCHHHHHHHHCSC----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCCHHHHHHHHccC----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999999985 6787643 3 379999999999999 999999999999999999999986443
No 38
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.20 E-value=5.8e-11 Score=85.37 Aligned_cols=62 Identities=29% Similarity=0.373 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHhcCCceeeEEee-e----CCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhc
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWR-K----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~-~----g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~ 270 (312)
..||++.|+||+ ..+.|+... . .+.|+|.|.|+|.. ++|.|.|||+||+.||+.||+.|...
T Consensus 3 ~knp~s~L~E~~----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR----PGLKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC----CSCEEEEEECCCCTTTCCEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC----CCCEEEEEEeECCCCCceEEEEEEECCEE-EEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 359999999993 345787643 3 37899999999986 59999999999999999999998753
No 39
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.13 E-value=2e-10 Score=83.38 Aligned_cols=63 Identities=29% Similarity=0.354 Sum_probs=49.9
Q ss_pred CchhHHHHHHHHhcCCceeeEEee-e----CCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCC
Q 021448 205 PQPVTLLFKLCQKNGKQVDIKHWR-K----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (312)
Q Consensus 205 ~~p~~~L~e~~q~~~~~~~~~~~~-~----g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~ 272 (312)
.+|++.|+++ . ..+.|.... . .+.|++.|.|+|..+ +|.|.|||+||+.||+.||+.|...-|
T Consensus 7 K~pl~~L~q~---~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~~ 74 (75)
T 3p1x_A 7 KNPVMELNEK---R-RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP 74 (75)
T ss_dssp CCHHHHHHHH---S-TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCHHHHHHHc---C-CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccCC
Confidence 4566666555 3 356787643 3 478999999999887 999999999999999999999976543
No 40
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.04 E-value=4.9e-10 Score=95.03 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=60.6
Q ss_pred CCchhHHHHHHHHhcCCceeeEEeeeC----CeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcC
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWRKN----RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~~g----~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~ 271 (312)
..||++.|+|+||++++.+.|.....| +.|++.|.|+|..++.|.|.|||+||+.||+.||..|....
T Consensus 103 ~~n~~~~L~E~~qk~~~~~~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~~~ 174 (179)
T 1qu6_A 103 MGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEE 174 (179)
T ss_dssp CCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHhcCCcceEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHHhccc
Confidence 358999999999999998888865555 58999999999988999999999999999999999997644
No 41
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=98.92 E-value=3.6e-09 Score=93.51 Aligned_cols=64 Identities=27% Similarity=0.246 Sum_probs=53.3
Q ss_pred CchhHHHHHHHHhcCCceeeEEee-eC----CeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhc
Q 021448 205 PQPVTLLFKLCQKNGKQVDIKHWR-KN----RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (312)
Q Consensus 205 ~~p~~~L~e~~q~~~~~~~~~~~~-~g----~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~ 270 (312)
.+||+.|+++++. ...+.|++.. .| +.|+|.|.|+|.. +.|.|.|||+||+.||+.||+.|...
T Consensus 4 ~~~K~~l~~l~e~-~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-~~G~G~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 4 VLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCTHHHHHHHHHH-CSSCEEEEEEEESCTTSCEEEEEEEETTEE-EEEEESHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHhhc-CCCceEEEEeccCCCCCCeEEEEEEECCEE-EEEecCChHHHHHHHHHHHHHHHHhc
Confidence 4788888888876 3345787643 34 7999999999988 59999999999999999999999864
No 42
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=98.72 E-value=4.7e-08 Score=86.36 Aligned_cols=62 Identities=29% Similarity=0.382 Sum_probs=52.0
Q ss_pred CCchhHHHHHHHHhcCCceeeEEee-----eCCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhc
Q 021448 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~~~~~~-----~g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~ 270 (312)
..|||+.|||| ...+.|.+.. +.+.|+|.|.|+|.. ++|.|.|||+||+.||+.||+.|...
T Consensus 160 ~~d~ks~LqE~----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 160 GKNPVMILNEL----RPGLKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SCCHHHHHHHH----CCCEEEEEECCSSSSSSCCEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHhc----CCCCcEEEEEeeCCCCCCeEEEEEEECCEE-EEeeeCCHHHHHHHHHHHHHHHHccc
Confidence 45999999999 3346787643 347899999999987 49999999999999999999999743
No 43
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=98.49 E-value=1.6e-07 Score=82.61 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=50.9
Q ss_pred CCchhHHHHHHHHhcCCcee-eE--Eee-eC----CeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHhhcC
Q 021448 204 QPQPVTLLFKLCQKNGKQVD-IK--HWR-KN----RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (312)
Q Consensus 204 ~~~p~~~L~e~~q~~~~~~~-~~--~~~-~g----~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~ 271 (312)
..||++.||| |++++..++ |. +.. .| +.|+|.|. ..++.|.|.|||+||+.||+.||+.|....
T Consensus 129 ~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~~~~ 200 (232)
T 2yt4_A 129 LLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLHPHV 200 (232)
T ss_dssp CCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHSTTC
T ss_pred CCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence 4699999999 998887654 65 332 33 57988776 567999999999999999999999998653
No 44
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.28 E-value=0.032 Score=42.29 Aligned_cols=76 Identities=18% Similarity=0.085 Sum_probs=54.7
Q ss_pred hhcCCchhHHHHHHHHhcCCc------eeeEEeeeCCeEEEEEEECC--EEEEEeeccCHHHHHHHHHHHHHHHHhhcCC
Q 021448 201 LQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDG--SFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (312)
Q Consensus 201 l~~~~~p~~~L~e~~q~~~~~------~~~~~~~~g~~f~~~V~v~g--~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~ 272 (312)
+...++||+.|...+|+--.. +-|.....++.-.|++.+.- ..-.+|.|+.|.+||.+||-.|+++|+.++-
T Consensus 13 L~~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~Lgl 92 (119)
T 2db2_A 13 LKEFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWGL 92 (119)
T ss_dssp TTTCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhCCChHHHHHHHHHHHHccCchhhheeEEeecCCceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHcCc
Confidence 344568999999988865332 22333222355577777764 4557799999999999999999999999886
Q ss_pred Cccc
Q 021448 273 VNCD 276 (312)
Q Consensus 273 ~~~~ 276 (312)
....
T Consensus 93 l~p~ 96 (119)
T 2db2_A 93 LGPR 96 (119)
T ss_dssp SCTT
T ss_pred cCCC
Confidence 6554
No 45
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.26 E-value=0.062 Score=40.61 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=49.8
Q ss_pred CchhHHHHHHHHhcCC------ceeeEE--e-eeCCeEEEEEEECC-----EEEEEeeccCHHHHHHHHHHHHHHHHhhc
Q 021448 205 PQPVTLLFKLCQKNGK------QVDIKH--W-RKNRKNIASVYVDG-----SFVASASSEQKEIAKLNAAREALEKLAQS 270 (312)
Q Consensus 205 ~~p~~~L~e~~q~~~~------~~~~~~--~-~~g~~f~~~V~v~g-----~~~~~g~g~skk~Ae~~AA~~AL~~L~~~ 270 (312)
.+.++.|+.+|++-.. .+.|.. . ..|+.| |+|.+-. ...|.-. .||+.||+.||-+|++.|...
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g~~~-~sk~~AK~sAAf~Ac~~L~~~ 81 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI-CRITLPANAPISEIESSLL-PSTEAAKKDACLKAVHELHNL 81 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEEEEE-SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeecCCCeE-EEEECCCCCCCCeeeCCcc-ccHHHHHHHHHHHHHHHHHHC
Confidence 3678899999997643 244553 2 235677 8998743 2334433 899999999999999999987
Q ss_pred CCCccc
Q 021448 271 MPVNCD 276 (312)
Q Consensus 271 ~~~~~~ 276 (312)
+-....
T Consensus 82 G~Ldd~ 87 (102)
T 2kou_A 82 GVLNDF 87 (102)
T ss_dssp CSCTTT
T ss_pred CCCccc
Confidence 755543
No 46
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=94.89 E-value=0.0067 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCC
Q 021448 290 IEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
..++|+.|||+|++++|++|+|+
T Consensus 14 ~~d~Ks~LqE~~Q~~~~~~P~Y~ 36 (88)
T 3adl_A 14 GSHEVGALQELVVQKGWRLPEYT 36 (88)
T ss_dssp TCCHHHHHHHHHHHTTCCCCEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCEEE
Confidence 34899999999999999999995
No 47
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=94.44 E-value=0.0075 Score=44.56 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCC
Q 021448 290 IEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
..++|..|||+|++++|++|+|+
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~ 37 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYT 37 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCeEE
Confidence 34899999999999999999994
No 48
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=93.78 E-value=0.015 Score=41.37 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC
Q 021448 291 EAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
.+||..|||+|++++|+ |.|+
T Consensus 7 ~d~ks~LqE~~q~~~~~-p~Y~ 27 (76)
T 1ekz_A 7 KSPISQVHEIGIKRNMT-VHFK 27 (76)
T ss_dssp SCHHHHHHHHHHHTTCC-CEEE
T ss_pred CCHHHHHHHHHHHcCCC-CEEE
Confidence 38999999999999999 9984
No 49
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=93.64 E-value=0.032 Score=43.99 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC
Q 021448 291 EAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
.++|..|||+|+++++++|+|+
T Consensus 26 ~d~Kt~LQE~~Qk~~~~~P~Y~ 47 (128)
T 1whn_A 26 ITPKMCLLEWCRREKLPQPVYE 47 (128)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCC
T ss_pred CCHHHHHHHHHHHcCCCCCeEE
Confidence 3899999999999999999995
No 50
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=93.19 E-value=0.017 Score=43.40 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCC
Q 021448 290 IEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
..++|..|||+|+++++++|+|+
T Consensus 15 ~kd~Kt~LqE~~Q~~~~~~P~Y~ 37 (98)
T 1x47_A 15 GKSEVCILHEYMQRVLKVRPVYN 37 (98)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCeEE
Confidence 44899999999999999999994
No 51
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=93.19 E-value=0.013 Score=44.50 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCC
Q 021448 290 IEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
..++|..|||+|++++|++|.|+
T Consensus 16 ~~d~Kt~LqE~~Q~~~~~~P~Y~ 38 (103)
T 2l2n_A 16 CYVFKSRLQEYAQKYKLPTPVYE 38 (103)
T ss_dssp ---CTTHHHHHHHHTTCCCCEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCeEE
Confidence 44899999999999999999995
No 52
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=92.21 E-value=0.073 Score=40.97 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCC
Q 021448 290 IEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
..+||..|||+|++++| +|.|+
T Consensus 25 ~~d~Kt~LqE~~Qk~~~-~p~Y~ 46 (113)
T 1uil_A 25 LENAKARLNQYFQKEKI-QGEYK 46 (113)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCE
T ss_pred cCCHHHHHHHHHHHCCC-CCeEE
Confidence 35999999999999999 99995
No 53
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=91.79 E-value=1 Score=34.02 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=64.3
Q ss_pred CcchhhhhhHHhhHHHHHHHHHHHCCCCCccchhHHHHHcCChHHHHHHHHHcCchHHHhhcchhhhHHHHHHHHHhhcc
Q 021448 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE 146 (312)
Q Consensus 67 ~~erLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~~r~~lvsn~~La~ia~~~gL~~~l~~~~~~~~~~~~~~~~~~~~e 146 (312)
.-.-|.-+||++++++++--|.+-. ..+.|. -|-|.+|+.--...||.+.+..
T Consensus 11 tdK~LakfGDSLvNfl~SlALse~l-G~Ptg~-------rVPnaSLaiale~agL~~~~pR------------------- 63 (133)
T 1ztd_A 11 IDKGLAKFGDSLINFLYSLALTEFL-GKPTGD-------RVPNASLAIALELTGLSKNLRR------------------- 63 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH-TSCCCC-------CCCHHHHHHHHHHHTGGGGCCG-------------------
T ss_pred hcchHHHHhHHHHHHHHHHHHHHHh-CCCCCC-------CCCChHHHHHHHHhhhhhcCCc-------------------
Confidence 3457899999999999998886432 222232 4778889887777888776621
Q ss_pred ccccccCCccCCchhHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhh
Q 021448 147 DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193 (312)
Q Consensus 147 ~~~~~~~~~~~~~k~lad~fEAliGAiylD~G~~~~~~~~~v~~ll~ 193 (312)
....--+|+.||+|+--|+.+-+......++++.=+.
T Consensus 64 ----------~DKh~kGd~aEA~iAyAWleG~is~eEaveilk~nl~ 100 (133)
T 1ztd_A 64 ----------VDKHAKGDYAEALIAKAWLMGLISEREAVEIIKKNLY 100 (133)
T ss_dssp ----------GGTTCHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTCC
T ss_pred ----------ccccCccHHHHHHHHHHHHhccccHHHHHHHHHhcCc
Confidence 1124578999999999999998887766666654333
No 54
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=90.35 E-value=0.39 Score=49.36 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=49.9
Q ss_pred chhHHHHHHHHhcCCceeeEEe----------------eeCC-eEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHh
Q 021448 206 QPVTLLFKLCQKNGKQVDIKHW----------------RKNR-KNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268 (312)
Q Consensus 206 ~p~~~L~e~~q~~~~~~~~~~~----------------~~g~-~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~ 268 (312)
.||..+++ +.|-+..|++. ++|| .|.|.+.+-+-.+.+++-+.||+|||.||+.||++|+
T Consensus 18 ~pk~~~~q---~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~~g 94 (950)
T 3htx_A 18 TPKAIIHQ---KFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLG 94 (950)
T ss_dssp CCHHHHHH---TTGGGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHH---HhCcceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHHhC
Confidence 68887764 44444556431 1344 7999999987766788899999999999999999999
Q ss_pred hcCCCcc
Q 021448 269 QSMPVNC 275 (312)
Q Consensus 269 ~~~~~~~ 275 (312)
-.+....
T Consensus 95 ~~~~~~~ 101 (950)
T 3htx_A 95 IRPQNDD 101 (950)
T ss_dssp STTTSCC
T ss_pred CCccccC
Confidence 8655444
No 55
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=89.42 E-value=0.094 Score=38.04 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC
Q 021448 291 EAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
.+||..|||+|++++ ++|.|+
T Consensus 8 ~d~Ks~LqE~~q~~~-~~p~Y~ 28 (84)
T 2dix_A 8 KTPIQVLHEYGMKTK-NIPVYE 28 (84)
T ss_dssp CCHHHHHHHHHHHTT-CCCEEE
T ss_pred CCHHHHHHHHHHHcC-CCCeEE
Confidence 489999999999998 799984
No 56
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=88.88 E-value=0.077 Score=39.68 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCC
Q 021448 290 IEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
+.++|..|||||++++++ |.|+
T Consensus 13 ~~n~Kt~LqE~~Q~~~~~-p~Y~ 34 (97)
T 1x49_A 13 PGFYMDKLNKYRQMHGVA-ITYK 34 (97)
T ss_dssp TTHHHHHHHHHHHHHTCC-EEEE
T ss_pred CCCHHHHHHHHHHHcCCC-CeEE
Confidence 569999999999999998 8884
No 57
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=86.42 E-value=0.19 Score=36.94 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC
Q 021448 291 EAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
.+||..|||+|++++ +.|+|+
T Consensus 14 kd~Ks~LqE~~q~~~-~~p~Y~ 34 (90)
T 3llh_A 14 KTPISLLQEYGTRIG-KTPVYD 34 (90)
T ss_dssp CCHHHHHHHHHHHTT-CCCEEE
T ss_pred CCHHHHHHHHHHhcC-CCCEEE
Confidence 389999999999887 589984
No 58
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=82.43 E-value=0.3 Score=36.36 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCC
Q 021448 290 IEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
..++|..|||+|.++ ++|+|+
T Consensus 15 ~~d~Kt~LqE~~Q~~--~~p~Y~ 35 (97)
T 2dmy_A 15 AIDLMNALMRLNQIR--PGLQYK 35 (97)
T ss_dssp SSSCTHHHHHHHHHS--CSCCCE
T ss_pred CCCHHHHHHHHHhcC--CCceEE
Confidence 347899999999996 899995
No 59
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=74.75 E-value=0.5 Score=40.42 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC
Q 021448 291 EAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
.+||..|||+|+++++++|.|+
T Consensus 150 ~~pks~LqE~~q~~~~~~p~Y~ 171 (221)
T 2nug_A 150 KDYKTILQEITQKRWKERPEYR 171 (221)
T ss_dssp CCHHHHHHHHHHHHHSCCCEEE
T ss_pred cCHHHHHHHHHHHcCCCCceEE
Confidence 4899999999999999999984
No 60
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=74.16 E-value=0.65 Score=40.61 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCC
Q 021448 290 IEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
..+||..|||+|+++++++|+|+
T Consensus 176 ~~dpks~LqE~~q~~~~~~p~Y~ 198 (248)
T 3n3w_A 176 IKDYKTKLQEITQGKIGQTPQYE 198 (248)
T ss_dssp -----------------------
T ss_pred ccCHHHHHHHHHHHcCCCCCceE
Confidence 45999999999999999999995
No 61
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=70.23 E-value=0.9 Score=39.37 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCC
Q 021448 290 IEAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
..+||..|||+|++++++.|+|+
T Consensus 161 ~~dpkt~Lqe~~q~~~~~~p~Y~ 183 (242)
T 2a11_A 161 GLDWKTSLQELTAARGLGAPSYL 183 (242)
T ss_dssp -----------------------
T ss_pred cCChHHHHHHHHHHhCCCCCeEE
Confidence 34899999999999999999995
No 62
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=68.04 E-value=0.87 Score=39.81 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC
Q 021448 291 EAAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~p~y~ 312 (312)
.+||..|||+|++++++.|+|+
T Consensus 179 ~dpkt~LqE~~q~~~~~~p~Y~ 200 (252)
T 1o0w_A 179 FDYKTALQEIVQSEHKVPPEYI 200 (252)
T ss_dssp SCHHHHHHHHHHHHHSSCCEEE
T ss_pred cCHHHHHHHHHHHcCCCCceEE
Confidence 4899999999999999999984
No 63
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=55.96 E-value=1.5 Score=32.22 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCC
Q 021448 292 AAKQKLHELCGKKKWPKPSYK 312 (312)
Q Consensus 292 ~~~~~l~~~~~~~~~~~p~y~ 312 (312)
++++.|||||.+++ .|+|+
T Consensus 15 ~~K~~LqEl~Qk~~--~p~Y~ 33 (91)
T 2l33_A 15 HGKNPVMELNEKRR--GLKYE 33 (91)
T ss_dssp STTCHHHHHHHHCS--SCEEE
T ss_pred CCCCHHHHHHHhCC--CCeEE
Confidence 56778999999998 88884
No 64
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=42.52 E-value=48 Score=22.31 Aligned_cols=39 Identities=8% Similarity=0.087 Sum_probs=28.2
Q ss_pred CCeEEEEEEE-CCEEEEEeeccCHHHHHHHHHHHHHHHHhhcCC
Q 021448 230 NRKNIASVYV-DGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (312)
Q Consensus 230 g~~f~~~V~v-~g~~~~~g~g~skk~Ae~~AA~~AL~~L~~~~~ 272 (312)
++.|...+.- ||++++++.|.+- ..+|..+++.++...|
T Consensus 10 ~G~frfrLka~NGevI~sSe~Y~s----k~~a~~gI~sVk~na~ 49 (64)
T 3bid_A 10 KGEYRWRLKAANHEIIAQGEGYTS----KQNCQHAVDLLKSTTA 49 (64)
T ss_dssp TSCEEEEEECTTSCEEEECCCBSC----HHHHHHHHHHHHTCCT
T ss_pred CCCEEEEEEeCCCCEEEECCCcCC----HHHHHHHHHHHHHhCC
Confidence 4667777777 8999998888532 3566788888887654
No 65
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Probab=38.16 E-value=1.2e+02 Score=22.35 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=45.4
Q ss_pred chhHHHHHHHHhcCCc-eeeEE--ee----e----------CCeEEEEEEECCEEEEEeeccCHHHHHHHHHHHHHHHHh
Q 021448 206 QPVTLLFKLCQKNGKQ-VDIKH--WR----K----------NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268 (312)
Q Consensus 206 ~p~~~L~e~~q~~~~~-~~~~~--~~----~----------g~~f~~~V~v~g~~~~~g~g~skk~Ae~~AA~~AL~~L~ 268 (312)
+--+.+.+..|.+|+. ..+.. .. + ...|....++.|.+++.|.+.+++.|+..-...-++.+.
T Consensus 24 ~i~~qi~Q~Lq~QGC~~~~~qCVI~e~~~~~~~L~~~~~~~T~~Y~~S~~~H~~IV~~~Ks~~~~Nsq~im~~~L~~L~q 103 (121)
T 2l6m_A 24 DIEHKVYQLLKDQGCEDFGTKCVIEEVKSSHKTLLNTELHLTKYYGFSFFRHGNIVAYGKSRKVANAKYIMKQRLLKLLE 103 (121)
T ss_dssp CHHHHHHHHHTTTTCCCEEEEEEEEECCCCSCCSSSSCTTCCEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcHHHhCCeEEEEehhhhhhhHHHhhhhhheeeeeEEEEeCcEEEehhhhhhhhHHHHHHHHHHHHHH
Confidence 3446788889999874 33331 11 1 135788999999999999999999998776655555554
Q ss_pred hc
Q 021448 269 QS 270 (312)
Q Consensus 269 ~~ 270 (312)
+.
T Consensus 104 ~~ 105 (121)
T 2l6m_A 104 DK 105 (121)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 66
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=37.71 E-value=6.9 Score=35.73 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCCCCC-CCCC
Q 021448 290 IEAAKQKLHELCGKKKWPK-PSYK 312 (312)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~-p~y~ 312 (312)
..+||..|||+|++++++. |+|+
T Consensus 253 ~~d~Kt~LqE~~Q~~~~~~~~~Y~ 276 (341)
T 3rv0_A 253 NKNAKNELAELLQINKLGHKLHYR 276 (341)
T ss_dssp ------------------------
T ss_pred ccCHHHHHHHHHHHcCCCCCceEE
Confidence 3499999999999999876 5884
No 67
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=35.27 E-value=38 Score=25.07 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHC---CCCCccchhHHHHHcCChHHHHHHHHHcCchHHH
Q 021448 80 GLALSNYVFLAY---PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125 (312)
Q Consensus 80 ~~~v~~~l~~~~---p~~~~g~Lt~~r~~lvsn~~La~ia~~~gL~~~l 125 (312)
+.-+++|+..+. +.++-.+| .+..-||..++.++|+++|+..|-
T Consensus 19 e~~ia~yil~~~~~~~~~si~el--A~~~~vS~aTv~Rf~kkLGf~gf~ 65 (107)
T 3iwf_A 19 EKKIAQFILNYPHKVVNMTSQEI--ANQLETSSTSIIRLSKKVTPGGFN 65 (107)
T ss_dssp HHHHHHHHHHCHHHHTTCCHHHH--HHHHTSCHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHHhCHHHHHHCCHHHH--HHHHCCCHHHHHHHHHHhCCCCHH
Confidence 345666666543 34555555 567899999999999999999985
No 68
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=31.57 E-value=18 Score=24.12 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCCCCCC
Q 021448 295 QKLHELCGKKKWPKPS 310 (312)
Q Consensus 295 ~~l~~~~~~~~~~~p~ 310 (312)
.++++||.+++|=+|.
T Consensus 32 ~eV~~YC~~kGwIiP~ 47 (60)
T 1ng7_A 32 QEVRDYCEKKGWIVNI 47 (60)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHCCceecc
Confidence 4779999999999986
No 69
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=23.97 E-value=30 Score=25.80 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHC---CCCCccchhHHHHHcCChHHHHHHHHHcCchHHH
Q 021448 80 GLALSNYVFLAY---PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125 (312)
Q Consensus 80 ~~~v~~~l~~~~---p~~~~g~Lt~~r~~lvsn~~La~ia~~~gL~~~l 125 (312)
+.-|++|+..+. +.++-.+| .+..-||..++.++|+++|+..|-
T Consensus 23 e~~ia~yil~~~~~~~~~si~el--A~~~~vS~aTv~Rf~kklG~~gf~ 69 (111)
T 2o3f_A 23 ERKLADYILAHPHXAIESTVNEI--SALANSSDAAVIRLCXSLGLKGFQ 69 (111)
T ss_dssp HHHHHHHHHHCHHHHHTCCHHHH--HHHTTCCHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHChHHHHhcCHHHH--HHHHCCCHHHHHHHHHHcCCCCHH
Confidence 344666666543 23555555 566799999999999999998875
Done!