Your job contains 1 sequence.
>021449
MVEILSLGRFHLHQNRPDLRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFL
RWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGR
WLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNL
KDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLH
PYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNI
LIRNLVVRSMVR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021449
(312 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2202170 - symbol:AT1G19170 species:3702 "Arabi... 1212 2.7e-123 1
TAIR|locus:2078531 - symbol:AT3G42950 species:3702 "Arabi... 1161 6.9e-118 1
TAIR|locus:2128524 - symbol:AT4G23820 species:3702 "Arabi... 666 2.0e-65 1
TAIR|locus:2101313 - symbol:AT3G48950 species:3702 "Arabi... 651 7.6e-64 1
TAIR|locus:2119156 - symbol:AT4G33440 species:3702 "Arabi... 638 1.8e-62 1
TAIR|locus:2098038 - symbol:AT3G62110 species:3702 "Arabi... 630 1.3e-61 1
TAIR|locus:2152980 - symbol:AT5G41870 species:3702 "Arabi... 620 1.5e-60 1
TAIR|locus:2082787 - symbol:AT3G61490 species:3702 "Arabi... 613 8.1e-60 1
TAIR|locus:2061396 - symbol:AT2G23900 species:3702 "Arabi... 612 1.0e-59 1
TAIR|locus:2117964 - symbol:AT4G23500 species:3702 "Arabi... 594 8.4e-58 1
TAIR|locus:2086740 - symbol:AT3G16850 species:3702 "Arabi... 590 2.2e-57 1
TAIR|locus:504954979 - symbol:AT5G49215 species:3702 "Ara... 570 2.9e-55 1
TAIR|locus:2083383 - symbol:AT3G06770 species:3702 "Arabi... 550 3.8e-53 1
TAIR|locus:2093212 - symbol:AT3G15720 species:3702 "Arabi... 180 2.7e-11 1
TAIR|locus:2076591 - symbol:AT3G57790 species:3702 "Arabi... 176 9.1e-11 1
TAIR|locus:2026795 - symbol:AT1G70500 species:3702 "Arabi... 135 4.0e-06 1
TAIR|locus:2023817 - symbol:AT1G48100 species:3702 "Arabi... 135 4.1e-06 1
TAIR|locus:2027534 - symbol:AT1G56710 species:3702 "Arabi... 131 1.0e-05 1
TAIR|locus:2054396 - symbol:PGAZAT "polygalacturonase abs... 104 1.1e-05 2
TAIR|locus:2167185 - symbol:AT5G17200 species:3702 "Arabi... 130 1.2e-05 1
TAIR|locus:2063114 - symbol:AT2G40310 species:3702 "Arabi... 92 1.5e-05 2
TAIR|locus:2222657 - symbol:AT5G14650 species:3702 "Arabi... 129 1.7e-05 1
TAIR|locus:2119485 - symbol:AT4G13760 species:3702 "Arabi... 86 2.7e-05 2
TAIR|locus:2030803 - symbol:AT1G43100 species:3702 "Arabi... 85 5.7e-05 2
TAIR|locus:2028844 - symbol:AT1G23460 species:3702 "Arabi... 122 0.00011 1
TAIR|locus:2088842 - symbol:AT3G26610 species:3702 "Arabi... 122 0.00023 2
TAIR|locus:2016314 - symbol:AT1G80170 species:3702 "Arabi... 117 0.00039 1
TAIR|locus:2030797 - symbol:AT1G43080 species:3702 "Arabi... 114 0.00072 1
TAIR|locus:2077407 - symbol:QRT2 "QUARTET 2" species:3702... 104 0.00077 2
>TAIR|locus:2202170 [details] [associations]
symbol:AT1G19170 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 EMBL:CP002684 GO:GO:0005576
GO:GO:0005975 GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
GO:GO:0016829 IPI:IPI00527248 RefSeq:NP_173351.1 UniGene:At.41758
ProteinModelPortal:F4IE17 SMR:F4IE17 PRIDE:F4IE17
EnsemblPlants:AT1G19170.1 GeneID:838500 KEGG:ath:AT1G19170
OMA:GHYLRPS Uniprot:F4IE17
Length = 506
Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
Identities = 235/331 (70%), Positives = 266/331 (80%)
Query: 1 MVEILSLGRFHLHQNRPDLRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFS-- 58
MVE L RF H R D +R + + L+SHKTLFT LW+ AF SVF+WQR A + G S
Sbjct: 1 MVENLFPSRFQFHLQRLDPKRRLTSLLASHKTLFTFLWITAFGSVFLWQRTAYIEGGSGT 60
Query: 59 ------FLRWGVAS--RPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLG-KK 109
F +G +PIPRLRP F+L DFGGVGDG TLNTEAF+RAV +ISKLG
Sbjct: 61 GPVGGKFTIFGKIKPIQPIPRLRPVVFDLKDFGGVGDGFTLNTEAFERAVISISKLGGSS 120
Query: 110 GGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGP 169
GGGQLNVPPGRWLTAPFNLTSHMTLFLA+D+EIL +E+EKYWPLMPPLPSYGYGRE GP
Sbjct: 121 GGGQLNVPPGRWLTAPFNLTSHMTLFLAEDSEILGVEDEKYWPLMPPLPSYGYGRERPGP 180
Query: 170 RFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNI 229
R+GS IHGQNLKD+VITGHNGTINGQGQ+WWKK++++LLN TRGPLVQIMWSSDI+I+NI
Sbjct: 181 RYGSLIHGQNLKDIVITGHNGTINGQGQSWWKKHQRRLLNYTRGPLVQIMWSSDIVIANI 240
Query: 230 TLRDSPFWTLHPYDCKNVTIRNAFI-SKIQLF--------DSCEDMVIEDCYISVGDDAI 280
T+RDSPFWTLHPYDCKNVTIRN I + + DSCEDMVIEDCYIS GDDAI
Sbjct: 241 TMRDSPFWTLHPYDCKNVTIRNVTILAPVTGAPNTDGIDPDSCEDMVIEDCYISTGDDAI 300
Query: 281 AIKSGWDQYGIAYGRPSMNILIRNLVVRSMV 311
AIKSGWDQ+GIAYGRPS NILIRNLVVRS++
Sbjct: 301 AIKSGWDQFGIAYGRPSTNILIRNLVVRSVI 331
>TAIR|locus:2078531 [details] [associations]
symbol:AT3G42950 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR000743
Pfam:PF00295 EMBL:CP002686 GO:GO:0005576 GO:GO:0005975 CAZy:GH28
GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
GO:GO:0016829 EMBL:AL138654 EMBL:AY050383 IPI:IPI00517878
PIR:T47353 RefSeq:NP_189881.1 UniGene:At.1332
ProteinModelPortal:Q9M1L0 SMR:Q9M1L0 PRIDE:Q9M1L0
EnsemblPlants:AT3G42950.1 GeneID:823351 KEGG:ath:AT3G42950
TAIR:At3g42950 InParanoid:Q9M1L0 OMA:QNIRITN PhylomeDB:Q9M1L0
ProtClustDB:CLSN2682441 Genevestigator:Q9M1L0 Uniprot:Q9M1L0
Length = 484
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 222/310 (71%), Positives = 252/310 (81%)
Query: 23 VPAFLSSHKTLFTVLWLAAFASVFIWQRNAV----VGGFSFLRWG-------VASRPIPR 71
V FLSSHK+L TV W+A FAS+FIWQ V GFS L W V S P+
Sbjct: 2 VRRFLSSHKSLITVFWIATFASLFIWQFGGVSTNLYSGFS-LFWSSSSTTTTVFSGGFPK 60
Query: 72 LRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSH 131
LRP FNLTDFG VGDGVT+NTEAF++A+Y ISKL KKGGGQLNVPPGRWLTAPFNLTS+
Sbjct: 61 LRPVVFNLTDFGAVGDGVTINTEAFEKAIYKISKLAKKGGGQLNVPPGRWLTAPFNLTSY 120
Query: 132 MTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGT 191
MTLFL+++AEILA+++EKYW L+PPLPSYGYGREHHGPR+GSFIHGQNL+DVV+TG+NG+
Sbjct: 121 MTLFLSENAEILALQDEKYWSLLPPLPSYGYGREHHGPRYGSFIHGQNLRDVVVTGNNGS 180
Query: 192 INGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN 251
INGQGQ WWKKYRQKLLN+TRGPLVQIMWSSDI+ +NITLRDSPFWTLHPYDCKNVTI N
Sbjct: 181 INGQGQTWWKKYRQKLLNHTRGPLVQIMWSSDIVFANITLRDSPFWTLHPYDCKNVTITN 240
Query: 252 AFISKIQLF----------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIL 301
I +F DSCEDM+IE+ YISVGDD IAIKSGWDQYG YG+PS NIL
Sbjct: 241 MTILA-PVFEAPNTDGIDPDSCEDMLIENSYISVGDDGIAIKSGWDQYGTTYGKPSKNIL 299
Query: 302 IRNLVVRSMV 311
IRNL++RSMV
Sbjct: 300 IRNLIIRSMV 309
>TAIR|locus:2128524 [details] [associations]
symbol:AT4G23820 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 GO:GO:0005576 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0005975 CAZy:GH28 eggNOG:COG5434
GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
EMBL:AL161560 EMBL:AL035394 HOGENOM:HOG000238076
ProtClustDB:CLSN2686003 EMBL:AY062697 EMBL:AY128793 IPI:IPI00542449
PIR:T05614 RefSeq:NP_194113.1 UniGene:At.22227 UniGene:At.67753
ProteinModelPortal:Q9SUP5 PaxDb:Q9SUP5 PRIDE:Q9SUP5
EnsemblPlants:AT4G23820.1 GeneID:828482 KEGG:ath:AT4G23820
TAIR:At4g23820 InParanoid:Q9SUP5 OMA:PCTELTS PhylomeDB:Q9SUP5
Genevestigator:Q9SUP5 Uniprot:Q9SUP5
Length = 444
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 132/246 (53%), Positives = 167/246 (67%)
Query: 69 IP-RLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFN 127
+P R R ++TDFGGVGDG T+NT+AF+ A+Y I L ++GG L +PPG +LT FN
Sbjct: 32 VPLRYRYDKISITDFGGVGDGRTVNTKAFRAAIYRIQHLKRRGGTLLYIPPGVYLTESFN 91
Query: 128 LTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITG 187
LTSHMTL+LA A I A+++ WPL+ PLPSYG GRE G R+ SFIHG L+DVVITG
Sbjct: 92 LTSHMTLYLAKGAVIRAVQDTWNWPLIDPLPSYGRGRELPGGRYMSFIHGDGLRDVVITG 151
Query: 188 HNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNV 247
NGTI+GQG+ WW +R + L TR L++ S +I+ISN+ ++SPFW +HP C NV
Sbjct: 152 QNGTIDGQGEVWWNMWRSRTLKYTRPNLIEFKDSKEIIISNVIFQNSPFWNIHPVYCSNV 211
Query: 248 TIRNAFISKIQLF--------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMN 299
I + I Q DS ++ IED YIS GDD +AIKSGWDQYGIAYGRPS N
Sbjct: 212 VIHHVTILAPQDSPNTDGIDPDSSYNVCIEDSYISTGDDLVAIKSGWDQYGIAYGRPSSN 271
Query: 300 ILIRNL 305
I IR +
Sbjct: 272 ITIRRI 277
>TAIR|locus:2101313 [details] [associations]
symbol:AT3G48950 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005576 EMBL:AL132967 GO:GO:0005975
CAZy:GH28 eggNOG:COG5434 GO:GO:0004650 Gene3D:2.160.20.10
InterPro:IPR006626 InterPro:IPR012334 InterPro:IPR011050
SMART:SM00710 SUPFAM:SSF51126 HOGENOM:HOG000238076
ProtClustDB:CLSN2684221 EMBL:DQ056615 IPI:IPI00541492 PIR:T46135
RefSeq:NP_190464.1 UniGene:At.53842 ProteinModelPortal:Q9SMT3
SMR:Q9SMT3 PaxDb:Q9SMT3 PRIDE:Q9SMT3 EnsemblPlants:AT3G48950.1
GeneID:824056 KEGG:ath:AT3G48950 TAIR:At3g48950 InParanoid:Q9SMT3
OMA:ARRITMK PhylomeDB:Q9SMT3 Genevestigator:Q9SMT3 Uniprot:Q9SMT3
Length = 469
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 126/236 (53%), Positives = 163/236 (69%)
Query: 79 LTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLAD 138
LTDFG VGDG T NT+AF+ A+ +S++ GG QL VPPG+WLT FNLTSH TLF+
Sbjct: 47 LTDFGAVGDGKTSNTKAFRNAISKLSQMATDGGAQLVVPPGKWLTGSFNLTSHFTLFIQR 106
Query: 139 DAEILAIENEKYWPLMPPLPSYGYGREHHGP-RFGSFIHGQNLKDVVITGHNGTINGQGQ 197
A ILA ++E WP++ PLPSYG GR+ G RF S I G NL DVVITG+NGTINGQGQ
Sbjct: 107 GATILASQDESEWPVIAPLPSYGKGRDGTGTGRFNSLISGTNLTDVVITGNNGTINGQGQ 166
Query: 198 AWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFI-SK 256
WW K+++K TR L++I++S +I ISNITL DSP W +HP C +V +++ + +
Sbjct: 167 YWWDKFKKKQFKITRPYLIEILFSKNIQISNITLIDSPSWNIHPVYCNSVIVKSVTVLAP 226
Query: 257 IQLF-------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNL 305
+ + DSC + +IEDCYI GDD IA+KSGWDQYGI +G P+ + IR L
Sbjct: 227 VTVPNTDGINPDSCTNTLIEDCYIVSGDDCIAVKSGWDQYGIKFGMPTQQLSIRRL 282
>TAIR|locus:2119156 [details] [associations]
symbol:AT4G33440 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 GO:GO:0005576 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0005975 CAZy:GH28 eggNOG:COG5434
GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
HOGENOM:HOG000238076 EMBL:BT002785 EMBL:BT004354 IPI:IPI00528054
RefSeq:NP_195070.2 UniGene:At.43591 ProteinModelPortal:Q84K13
PaxDb:Q84K13 PRIDE:Q84K13 EnsemblPlants:AT4G33440.1 GeneID:829481
KEGG:ath:AT4G33440 TAIR:At4g33440 InParanoid:Q84K13 OMA:TRGHLIE
PhylomeDB:Q84K13 ProtClustDB:CLSN2690354 Genevestigator:Q84K13
Uniprot:Q84K13
Length = 475
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 126/236 (53%), Positives = 161/236 (68%)
Query: 78 NLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLA 137
++TDFGGVGDG T NT AF+RAV + +GG QLNVP G WL+ FNLTS+ TLFL
Sbjct: 73 SITDFGGVGDGKTSNTAAFRRAVRHLEGFAAEGGAQLNVPEGTWLSGSFNLTSNFTLFLE 132
Query: 138 DDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQ 197
A IL ++ WP++ PLPSYG GRE G R S IHG NL +VVITG NGTI+GQG+
Sbjct: 133 RGALILGSKDLDEWPIIEPLPSYGRGRERPGGRHISLIHGDNLTNVVITGENGTIDGQGK 192
Query: 198 AWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN-AFISK 256
WW+ + + L +TRG L+++ S +ILISN+TL +SPFWT+HP C NV IRN ++
Sbjct: 193 MWWELWWNRTLVHTRGHLIELKNSHNILISNLTLLNSPFWTIHPVYCSNVVIRNMTILAP 252
Query: 257 IQLF-------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNL 305
+ DS ++ IEDCYI GDD +A+KSGWDQYG+A RPS NI+IR +
Sbjct: 253 MNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAVARPSSNIVIRRI 308
>TAIR|locus:2098038 [details] [associations]
symbol:AT3G62110 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] InterPro:IPR000743 Pfam:PF00295
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005576
GO:GO:0005975 CAZy:GH28 eggNOG:COG5434 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
HOGENOM:HOG000238076 EMBL:AF324992 EMBL:BT000724 IPI:IPI00542616
RefSeq:NP_567126.1 UniGene:At.19142 ProteinModelPortal:Q9FPJ2
SMR:Q9FPJ2 PaxDb:Q9FPJ2 PRIDE:Q9FPJ2 EnsemblPlants:AT3G62110.1
GeneID:825384 KEGG:ath:AT3G62110 TAIR:At3g62110 InParanoid:Q9FPJ2
OMA:YGEHPDE PhylomeDB:Q9FPJ2 ProtClustDB:CLSN2689318
ArrayExpress:Q9FPJ2 Genevestigator:Q9FPJ2 Uniprot:Q9FPJ2
Length = 471
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 121/241 (50%), Positives = 164/241 (68%)
Query: 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHM 132
RP + ++T+FG VGDGVTLNT+AFQ A++ ++ KGG +L VP G+WLT F+L SH+
Sbjct: 39 RPHSVSITEFGAVGDGVTLNTKAFQNALFYLNSFSDKGGAKLFVPAGQWLTGSFDLISHL 98
Query: 133 TLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTI 192
TL+L A IL + + WP++ PLPSYG GRE G R S I+GQNL DVVITG NGTI
Sbjct: 99 TLWLDKGATILGSTSSENWPVVDPLPSYGRGRELPGRRHRSLIYGQNLTDVVITGENGTI 158
Query: 193 NGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN- 251
+GQG WW +R LN TR LV++M S+ ++ISN+T +SPFW +HP C++V ++N
Sbjct: 159 DGQGTVWWDWFRNGELNYTRPHLVELMNSTGLIISNLTFLNSPFWNIHPVYCRDVVVKNL 218
Query: 252 AFISKIQLF-------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRN 304
++ ++ DS ++ IEDCYI GDD ++IKSGWD+YGI+Y RPS I I
Sbjct: 219 TILAPLESPNTDGVDPDSSTNVCIEDCYIVTGDDLVSIKSGWDEYGISYARPSSKIKINR 278
Query: 305 L 305
L
Sbjct: 279 L 279
>TAIR|locus:2152980 [details] [associations]
symbol:AT5G41870 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005576 GO:GO:0005975 CAZy:GH28
eggNOG:COG5434 GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
EMBL:AB016871 HSSP:P26509 HOGENOM:HOG000238076 EMBL:BT015129
IPI:IPI00540800 RefSeq:NP_199002.1 UniGene:At.27978
UniGene:At.43191 ProteinModelPortal:Q9FJ27 SMR:Q9FJ27 PaxDb:Q9FJ27
PRIDE:Q9FJ27 EnsemblPlants:AT5G41870.1 GeneID:834192
KEGG:ath:AT5G41870 TAIR:At5g41870 InParanoid:Q9FJ27 OMA:PCAELAT
PhylomeDB:Q9FJ27 ProtClustDB:CLSN2686003 Genevestigator:Q9FJ27
Uniprot:Q9FJ27
Length = 449
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 124/242 (51%), Positives = 159/242 (65%)
Query: 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQL-NVPPGRWLTAPFNLTSH 131
R +++DFG VGDG TLNT+AF A+ I G L VP G +LT FNLTSH
Sbjct: 41 RNEMLSISDFGAVGDGKTLNTKAFNSAIDRIRNSNNSNEGTLLYVPRGVYLTQSFNLTSH 100
Query: 132 MTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGT 191
MTL+LAD A I A+++ + WPL PLPSYG GREH G R+ SFIHG L DVVITG NGT
Sbjct: 101 MTLYLADGAVIKAVQDTEKWPLTDPLPSYGRGREHPGRRYISFIHGDGLNDVVITGRNGT 160
Query: 192 INGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN 251
I+GQG+ WW +R L TR L++ S++IL+S++ L++SPFWTLHP C NV + +
Sbjct: 161 IDGQGEPWWNMWRHGTLKFTRPGLIEFNNSTNILVSHVVLQNSPFWTLHPVYCSNVVVHH 220
Query: 252 AFI-SKIQLF-------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIR 303
I + + DS ++ IED YIS GDD +A+KSGWD+YGIAY RPS +I IR
Sbjct: 221 VTILAPTDSYNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYNRPSRDITIR 280
Query: 304 NL 305
+
Sbjct: 281 RI 282
>TAIR|locus:2082787 [details] [associations]
symbol:AT3G61490 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005576 EMBL:AL132962 GO:GO:0005975
CAZy:GH28 eggNOG:COG5434 GO:GO:0004650 Gene3D:2.160.20.10
InterPro:IPR006626 InterPro:IPR012334 InterPro:IPR011050
SMART:SM00710 SUPFAM:SSF51126 HOGENOM:HOG000238076 IPI:IPI00527942
PIR:T47941 RefSeq:NP_001190154.1 RefSeq:NP_191708.1
RefSeq:NP_974473.1 UniGene:At.43625 ProteinModelPortal:Q9M318
SMR:Q9M318 PaxDb:Q9M318 PRIDE:Q9M318 EnsemblPlants:AT3G61490.1
EnsemblPlants:AT3G61490.2 EnsemblPlants:AT3G61490.3 GeneID:825322
KEGG:ath:AT3G61490 TAIR:At3g61490 InParanoid:Q9M318 OMA:GKLKYTR
PhylomeDB:Q9M318 ProtClustDB:CLSN2915754 Genevestigator:Q9M318
Uniprot:Q9M318
Length = 476
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 119/241 (49%), Positives = 162/241 (67%)
Query: 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHM 132
R + ++T++GGVGDG TLNT+AFQ AV +S+ +GG QL VP G+WLT FNLTSH
Sbjct: 41 RSHSASITEYGGVGDGKTLNTKAFQSAVDHLSQYSSEGGAQLFVPAGKWLTGSFNLTSHF 100
Query: 133 TLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTI 192
TLFL DA +LA ++ +P++ LPSYG GR+ G RF S I G NL DV+ITG+NGTI
Sbjct: 101 TLFLHKDAILLAAQDLNEYPILKALPSYGRGRDAAGGRFASLIFGTNLSDVIITGNNGTI 160
Query: 193 NGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNA 252
+GQG WW+K+ L TR L+++M+S I ISN+T DSP W +HP N+ ++
Sbjct: 161 DGQGSFWWQKFHGGKLKYTRPYLIELMFSDTIQISNLTFLDSPSWNIHPVYSSNIIVKGV 220
Query: 253 -FISKIQLF-------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRN 304
I+ ++ DSC + IEDCYI GDD IA+KSGWD+YGI++G P+ +++IR
Sbjct: 221 TIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCIAVKSGWDEYGISFGMPTKHLVIRR 280
Query: 305 L 305
L
Sbjct: 281 L 281
>TAIR|locus:2061396 [details] [associations]
symbol:AT2G23900 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 GO:GO:0005576 EMBL:CP002685
GO:GO:0005975 GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
GO:GO:0016829 EMBL:DQ446556 IPI:IPI00539911 RefSeq:NP_179968.2
UniGene:At.50092 ProteinModelPortal:Q1PF10 SMR:Q1PF10 PRIDE:Q1PF10
EnsemblPlants:AT2G23900.1 GeneID:816922 KEGG:ath:AT2G23900
TAIR:At2g23900 InParanoid:Q1PF10 OMA:NDGCDPE PhylomeDB:Q1PF10
ProtClustDB:CLSN2684221 Genevestigator:Q1PF10 Uniprot:Q1PF10
Length = 477
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 132/292 (45%), Positives = 178/292 (60%)
Query: 24 PAFLSSHKTLFTVLWLAAFASVFIWQ-RNAVVGGFSFLRWGVASRPIPRLRPAAFNLTDF 82
P+ L +T F +L + A +S + + R+ G + + + + R A LT+F
Sbjct: 7 PSTLKMIRTSFCILVVLAISSFSMMEARDLASKGKTNIEYMALNC---RKHTAV--LTEF 61
Query: 83 GGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEI 142
G VGDG T NT+AF+ A+ ++ GG QL VPPG+WLT FNLTSH TLF+ A I
Sbjct: 62 GAVGDGKTSNTKAFKEAITKLAPKAADGGVQLIVPPGKWLTGSFNLTSHFTLFIQKGATI 121
Query: 143 LAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKK 202
LA ++E +P++ PLPSYG GR+ GP F S I G NL DVVITG+NGTINGQG+ WW K
Sbjct: 122 LASQDESEYPVVAPLPSYGQGRDAAGPTFASLISGTNLTDVVITGNNGTINGQGKYWWVK 181
Query: 203 YRQKLLNN-TRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFI-SKIQLF 260
YR TR ++I++S ++ ISNIT+ DSP W +HP C NV ++ I + I
Sbjct: 182 YRSGGFKGITRPYTIEIIFSQNVQISNITIIDSPAWNIHPVYCNNVIVKGVTILAPIDSP 241
Query: 261 -------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNL 305
DSC + +IEDCY+ GDD IA+KSGWDQ+GI G P+ + IR L
Sbjct: 242 NTDGINPDSCTNTLIEDCYVVSGDDCIAVKSGWDQFGIKVGMPTQQLSIRRL 293
>TAIR|locus:2117964 [details] [associations]
symbol:AT4G23500 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS] [GO:0005618
"cell wall" evidence=IDA] InterPro:IPR000743 Pfam:PF00295
GO:GO:0005618 GO:GO:0005576 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0005975 CAZy:GH28 eggNOG:COG5434 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126 EMBL:AL031326
EMBL:AL161559 EMBL:AY142497 EMBL:AK221568 IPI:IPI00537164
PIR:T05388 RefSeq:NP_194081.1 UniGene:At.32423
ProteinModelPortal:O81746 SMR:O81746 PaxDb:O81746 PRIDE:O81746
EnsemblPlants:AT4G23500.1 GeneID:828450 KEGG:ath:AT4G23500
TAIR:At4g23500 HOGENOM:HOG000238076 InParanoid:O81746 OMA:YGRGRDT
PhylomeDB:O81746 ProtClustDB:CLSN2916139 Genevestigator:O81746
Uniprot:O81746
Length = 495
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 123/241 (51%), Positives = 155/241 (64%)
Query: 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHM 132
R + +L +FG VGDGVT NT AF+ AV +S+ GG L VP GRWLT FNLTSH
Sbjct: 64 RAYSASLDEFGAVGDGVTSNTAAFRDAVSQLSRFADYGGSLLFVPAGRWLTGNFNLTSHF 123
Query: 133 TLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTI 192
TLFL DA ILA + E + ++ PLPSYG GR+ G RF S + G NL DVVITG NGTI
Sbjct: 124 TLFLHRDAVILASQEESDYEVIEPLPSYGRGRDTDGGRFISLLFGSNLTDVVITGENGTI 183
Query: 193 NGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN- 251
+GQG+ WW K+++ L TR L++IM S I ISN+T +SP W +HP N+ I+
Sbjct: 184 DGQGEPWWGKFKRGELKYTRPYLIEIMHSDGIQISNLTFLNSPSWHIHPVYSSNIYIQGL 243
Query: 252 AFISKIQLF-------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRN 304
++ + + DSC + IEDCYI GDD IA+KSGWDQYGI YG P+ +LIR
Sbjct: 244 TILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGINYGMPTKQLLIRR 303
Query: 305 L 305
L
Sbjct: 304 L 304
>TAIR|locus:2086740 [details] [associations]
symbol:AT3G16850 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0009505 "plant-type cell wall"
evidence=IDA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009637
"response to blue light" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0046777 "protein autophosphorylation"
evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
InterPro:IPR000743 Pfam:PF00295 GO:GO:0005773 EMBL:CP002686
GO:GO:0005576 GO:GO:0005975 GO:GO:0009505 CAZy:GH28 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
HOGENOM:HOG000238076 EMBL:AY035074 EMBL:AY113876 IPI:IPI00537813
RefSeq:NP_188308.1 UniGene:At.22797 ProteinModelPortal:Q94C86
STRING:Q94C86 PRIDE:Q94C86 EnsemblPlants:AT3G16850.1 GeneID:820938
KEGG:ath:AT3G16850 TAIR:At3g16850 InParanoid:Q94C86 OMA:CIEDSTI
PhylomeDB:Q94C86 ProtClustDB:CLSN2913450 ArrayExpress:Q94C86
Genevestigator:Q94C86 Uniprot:Q94C86
Length = 455
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 119/245 (48%), Positives = 158/245 (64%)
Query: 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHM 132
RP + ++ +FG VGDG TLNT AFQ AV+ + KGG QL VPPG+WLT FNLTSH+
Sbjct: 36 RPHSVSILEFGAVGDGKTLNTIAFQNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHL 95
Query: 133 TLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTI 192
TLFL A ILA + +W ++ PLPSYG G E G R+ S I+G NL DVVITG NGT
Sbjct: 96 TLFLEKGATILASPDPSHWDVVSPLPSYGRGIELPGKRYRSLINGDNLIDVVITGENGTF 155
Query: 193 NGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNA 252
+GQG AWW+ LN +R +++ + S ILISN+T ++P +HP C + IR
Sbjct: 156 DGQGAAWWEWLESGSLNYSRPHIIEFVSSKHILISNLTFLNAPAINIHPVYCSQIHIRKV 215
Query: 253 FI-SKIQ-------LFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRN 304
I + + DS +++ IED I+VG DA+++KSGWDQYGI YGRP+ + IRN
Sbjct: 216 LIETSVDSPHVLGVAPDSSDNVCIEDSTINVGHDAVSLKSGWDQYGIHYGRPTTAVHIRN 275
Query: 305 LVVRS 309
L ++S
Sbjct: 276 LRLKS 280
>TAIR|locus:504954979 [details] [associations]
symbol:AT5G49215 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005576 GO:GO:0005975 CAZy:GH28
eggNOG:COG5434 GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
HOGENOM:HOG000238076 EMBL:AY090997 EMBL:AY133817 IPI:IPI00524996
RefSeq:NP_680409.1 UniGene:At.44190 ProteinModelPortal:Q8RX04
PaxDb:Q8RX04 PRIDE:Q8RX04 EnsemblPlants:AT5G49215.1 GeneID:834981
KEGG:ath:AT5G49215 TAIR:At5g49215 InParanoid:Q8RX04 OMA:FLANGSF
PhylomeDB:Q8RX04 ProtClustDB:CLSN2690230 Genevestigator:Q8RX04
Uniprot:Q8RX04
Length = 449
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 112/248 (45%), Positives = 161/248 (64%)
Query: 70 PRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT 129
P RP + +TDFG VGDG TLNT AFQ AV+ + KGG QL VPPGRWLT FNLT
Sbjct: 36 PSERPHSVKITDFGAVGDGKTLNTLAFQNAVFYLKSFADKGGAQLYVPPGRWLTGSFNLT 95
Query: 130 SHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHN 189
SH+TLFL DA ILA ++ +W + LPSYG G + G R+ S I+G L DVV+TG N
Sbjct: 96 SHLTLFLEKDAVILASQDPSHWQVTDALPSYGRGIDLPGKRYMSLINGDMLHDVVVTGDN 155
Query: 190 GTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTI 249
GTI+GQG WW ++ L +R LV+ + + ++++SN+T ++P +T+H C+N+ I
Sbjct: 156 GTIDGQGLVWWDRFNSHSLEYSRPHLVEFVSAENVIVSNLTFLNAPAYTIHSVYCRNLYI 215
Query: 250 RNAFISK-------IQLF-DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIL 301
+ I + DS E++ I++ I++G DAI++KSG D+YG++Y RP+ N+
Sbjct: 216 HRVTANTCPESPYTIGIVPDSSENVCIQESSINMGYDAISLKSGCDEYGLSYARPTANVQ 275
Query: 302 IRNLVVRS 309
IRN+ +R+
Sbjct: 276 IRNVYLRA 283
>TAIR|locus:2083383 [details] [associations]
symbol:AT3G06770 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005634
"nucleus" evidence=ISM] [GO:0005975 "carbohydrate metabolic
process" evidence=IEA;ISS] InterPro:IPR000743 Pfam:PF00295
EMBL:CP002686 GO:GO:0005576 GO:GO:0005975 CAZy:GH28 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
HOGENOM:HOG000238076 EMBL:AY093030 EMBL:AY128935 IPI:IPI00522825
RefSeq:NP_850525.1 UniGene:At.26688 ProteinModelPortal:Q8RWK6
SMR:Q8RWK6 STRING:Q8RWK6 PRIDE:Q8RWK6 EnsemblPlants:AT3G06770.2
GeneID:819862 KEGG:ath:AT3G06770 TAIR:At3g06770 InParanoid:Q8RWK6
OMA:TENVHIR PhylomeDB:Q8RWK6 ProtClustDB:CLSN2688125
ArrayExpress:Q8RWK6 Genevestigator:Q8RWK6 Uniprot:Q8RWK6
Length = 446
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 109/244 (44%), Positives = 158/244 (64%)
Query: 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHM 132
RP + ++TDFG VGDG TLNT AFQ AV+ + KGG QL VPPG WLT F+LTSH+
Sbjct: 39 RPHSVSITDFGAVGDGKTLNTLAFQNAVFYLMSFADKGGAQLYVPPGHWLTGSFSLTSHL 98
Query: 133 TLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTI 192
TLFL + A I+A ++ +W ++ PLPSYG G + G R+ S I+G L DVV+TG NGTI
Sbjct: 99 TLFLENGAVIVASQDPSHWEVVDPLPSYGRGIDLPGKRYKSLINGNKLHDVVVTGDNGTI 158
Query: 193 NGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN- 251
+GQG WW ++ L R L++ + S ++++SN+T ++P ++++ +V I
Sbjct: 159 DGQGLVWWDRFTSHSLKYNRPHLIEFLSSENVIVSNLTFLNAPAYSIYSIYSSHVYIHKI 218
Query: 252 -AFISKIQLF------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRN 304
A S + DS + + I++ I+VG DAI++KSGWD+YGIAY RP+ N+ IRN
Sbjct: 219 LAHSSPKSPYTIGIVPDSSDYVCIQNSTINVGYDAISLKSGWDEYGIAYSRPTENVHIRN 278
Query: 305 LVVR 308
+ +R
Sbjct: 279 VYLR 282
>TAIR|locus:2093212 [details] [associations]
symbol:AT3G15720 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS] [GO:0031225
"anchored to membrane" evidence=TAS] [GO:0046658 "anchored to
plasma membrane" evidence=IDA] [GO:0009505 "plant-type cell wall"
evidence=IDA] InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005576 GO:GO:0005975
GO:GO:0009505 CAZy:GH28 eggNOG:COG5434 HOGENOM:HOG000237792
KO:K01184 GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
EMBL:AB017071 GO:GO:0046658 IPI:IPI00519614 RefSeq:NP_566524.1
UniGene:At.39003 HSSP:O74213 ProteinModelPortal:Q9LW07 SMR:Q9LW07
STRING:Q9LW07 EnsemblPlants:AT3G15720.1 GeneID:820815
KEGG:ath:AT3G15720 GeneFarm:340 TAIR:At3g15720 InParanoid:Q9LW07
OMA:SLRINAP PhylomeDB:Q9LW07 ProtClustDB:PLN03003
Genevestigator:Q9LW07 GermOnline:AT3G15720 Uniprot:Q9LW07
Length = 456
Score = 180 (68.4 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 74/241 (30%), Positives = 116/241 (48%)
Query: 76 AFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLF 135
A ++T FG VGDGVT +++AF +A A+ G G GQ VP G +T F L L
Sbjct: 23 ALDVTQFGAVGDGVTDDSQAFLKAWEAVCS-GT-GDGQFVVPAG--MT--FML---QPLK 73
Query: 136 LADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQ 195
+ + + L+ P S G + G + +I +++ +VI G +G INGQ
Sbjct: 74 FQGSCKSTPVFVQMLGKLVAP--SKGNWK---GDK-DQWILFTDIEGLVIEG-DGEINGQ 126
Query: 196 GQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFIS 255
G +WW+ +R ++ +++ +S +T DSP +H +C VTI + I+
Sbjct: 127 GSSWWEH------KGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRIN 180
Query: 256 KIQLFDSCE--------DMVIEDCYISVGDDAIAIKSGWDQY---GIAYGRPSMNILIRN 304
+ + + ++VI+DC I+ GDD IAI SG GI G P I I +
Sbjct: 181 APESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCG-PGHGISIGS 239
Query: 305 L 305
L
Sbjct: 240 L 240
>TAIR|locus:2076591 [details] [associations]
symbol:AT3G57790 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS] [GO:0005774
"vacuolar membrane" evidence=IDA] InterPro:IPR000743 Pfam:PF00295
GO:GO:0005774 EMBL:CP002686 GO:GO:0005576 GO:GO:0005975
GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
IPI:IPI00532018 RefSeq:NP_567055.1 UniGene:At.28595
ProteinModelPortal:F4J3I0 SMR:F4J3I0 PRIDE:F4J3I0
EnsemblPlants:AT3G57790.1 GeneID:824949 KEGG:ath:AT3G57790
OMA:ITRCHID ArrayExpress:F4J3I0 Uniprot:F4J3I0
Length = 490
Score = 176 (67.0 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 65/222 (29%), Positives = 96/222 (43%)
Query: 78 NLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNV--PPGRWLTAPFNLTSHMTLF 135
++TDFG GDG+ +T A Q + A ++ V P G +LTA +L S + L
Sbjct: 36 SVTDFGATGDGINYDTSAIQSTIDACNRHYTSFSSICRVVFPSGNYLTAKLHLRSGVILD 95
Query: 136 LADDAEILAIEN-EKYWPLMPPLPSY---GYGREHHGPRFGSFIHGQNLKDVVITGHNGT 191
+ ++A +L E Y+P Y G G I GQ K VV
Sbjct: 96 VTENAVLLGGPRIEDYYPAETSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKN 155
Query: 192 INGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN 251
+ W + L + R LV + S ++ I NITLR+ +W LH C+N ++ +
Sbjct: 156 V----MVSWNQTGACLGDECRPRLVGFVDSINVEIWNITLREPAYWCLHIVRCENTSVHD 211
Query: 252 AFI---------SKIQLFDSCEDMVIEDCYISVGDDAIAIKS 284
I I + DS + VI C+I GDDAI K+
Sbjct: 212 VSILGDFNTPNNDGIDIEDS-NNTVITRCHIDTGDDAICPKT 252
>TAIR|locus:2026795 [details] [associations]
symbol:AT1G70500 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0010638 "positive regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0042546 "cell wall
biogenesis" evidence=RCA] [GO:0044036 "cell wall macromolecule
metabolic process" evidence=RCA] [GO:0045492 "xylan biosynthetic
process" evidence=RCA] InterPro:IPR000743 Pfam:PF00295
PROSITE:PS00502 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005576 GO:GO:0005975 EMBL:AC010796 CAZy:GH28 eggNOG:COG5434
HOGENOM:HOG000237792 GO:GO:0004650 Gene3D:2.160.20.10
InterPro:IPR006626 InterPro:IPR012334 InterPro:IPR011050
SMART:SM00710 SUPFAM:SSF51126 GO:GO:0016829 IPI:IPI00520664
PIR:H96728 RefSeq:NP_177207.1 UniGene:At.52467
ProteinModelPortal:Q9CAL5 SMR:Q9CAL5 PRIDE:Q9CAL5
EnsemblPlants:AT1G70500.1 GeneID:843386 KEGG:ath:AT1G70500
TAIR:At1g70500 InParanoid:Q9CAL5 OMA:TIQSCRI PhylomeDB:Q9CAL5
ProtClustDB:CLSN2682788 Genevestigator:Q9CAL5 Uniprot:Q9CAL5
Length = 468
Score = 135 (52.6 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 62/225 (27%), Positives = 99/225 (44%)
Query: 78 NLTDFGGVGDGVTLNTEAFQRA-VYAISKLGKKGGGQLNVPPGR-WLT--APFNLTSHMT 133
N+ F GDGV+ +T+AF RA A S L VP GR +L F+
Sbjct: 68 NVDSFNASGDGVSDDTQAFIRAWTMACSA----PNSVLLVPQGRSYLVNATKFDGPCQEK 123
Query: 134 LFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTIN 193
L + D I+A + W P + PR +++ L+ VV G NG I+
Sbjct: 124 LIIQIDGTIIAPDEPSQWD-----PKF--------PR--NWLQFSKLQGVVFQG-NGVID 167
Query: 194 GQGQAWWKKYRQKLLNN--TRGPLVQIMWSS-DILISNITLRDSPFWTLHPYDCKNVTIR 250
G G WW +K +N P ++SS ++ + +T+R+S +H ++ T+R
Sbjct: 168 GSGTKWWAASCKKNKSNPCVGAPTALTIYSSSNVYVRGLTIRNSQ--QMHLIIQRSTTVR 225
Query: 251 NAFISKIQLFDS----------CEDMVIEDCYISVGDDAIAIKSG 285
+ + DS D+V++D IS GDD ++I +G
Sbjct: 226 ISRVMVTSPGDSPNTDGIHITASTDVVVQDSKISTGDDCVSIVNG 270
>TAIR|locus:2023817 [details] [associations]
symbol:AT1G48100 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005618 GO:GO:0005576 GO:GO:0005975
CAZy:GH28 eggNOG:COG5434 HOGENOM:HOG000237792 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126 EMBL:AC023673
EMBL:AF410319 EMBL:AY050798 EMBL:AY096360 IPI:IPI00541837
PIR:C96521 RefSeq:NP_175244.1 UniGene:At.48286 UniGene:At.70184
ProteinModelPortal:Q949Z1 SMR:Q949Z1 EnsemblPlants:AT1G48100.1
GeneID:841228 KEGG:ath:AT1G48100 GeneFarm:478 TAIR:At1g48100
InParanoid:Q949Z1 OMA:QACVSNI PhylomeDB:Q949Z1
ProtClustDB:CLSN2682184 Genevestigator:Q949Z1 Uniprot:Q949Z1
Length = 475
Score = 135 (52.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 68/253 (26%), Positives = 112/253 (44%)
Query: 77 FNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFL 136
F++T FG VGDG +T AFQ A A + G + P G F +TS T+F
Sbjct: 80 FDVTSFGAVGDGSCDDTAAFQDAWKAACAVES---GVVLAPEG----GVFKITS--TIFS 130
Query: 137 ADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQG 196
L + + LMPP + + + ++ F L +G GT+ G G
Sbjct: 131 GPCKPGLVFQLDGV--LMPPDGPEEWPEKDNKNQWLVFYR---LDGFTFSG-KGTVEGNG 184
Query: 197 QAWW----KKYRQKLLNNTRGP-----LVQIMWSSDILISNITLRDSPFWTLHPYDCKNV 247
Q WW K +R +++ GP +++ S++I + + +++SP + + C+ V
Sbjct: 185 QKWWDLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGV 244
Query: 248 TIRNAFISKIQLFDSCE--------DMVIEDCYISVGDDAIAIKSGW---DQYGIAYGRP 296
I IS +L + + + I + +S GDD I+I +G D G+ G P
Sbjct: 245 LINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCG-P 303
Query: 297 SMNILIRNLVVRS 309
S I I +L V +
Sbjct: 304 SHGISIGSLGVHN 316
>TAIR|locus:2027534 [details] [associations]
symbol:AT1G56710 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005576 GO:GO:0005975 CAZy:GH28
eggNOG:COG5434 HOGENOM:HOG000237792 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126 GO:GO:0016829
EMBL:AC009323 IPI:IPI00545331 PIR:A96609 RefSeq:NP_176064.1
UniGene:At.49984 ProteinModelPortal:Q9FXC1 SMR:Q9FXC1 PaxDb:Q9FXC1
PRIDE:Q9FXC1 EnsemblPlants:AT1G56710.1 GeneID:842127
KEGG:ath:AT1G56710 TAIR:At1g56710 InParanoid:Q9FXC1 OMA:CDSPVAI
PhylomeDB:Q9FXC1 ProtClustDB:CLSN2912808 Genevestigator:Q9FXC1
Uniprot:Q9FXC1
Length = 434
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 74/262 (28%), Positives = 110/262 (41%)
Query: 72 LRPAAFNLTDFGGVGDGVTLNTEAFQRAV-YAISKLGKKGGGQLNVP-PGRWLTAP--FN 127
+ P F++T FG +GD T +T AF+ A A G K L VP +L P FN
Sbjct: 43 IAPTVFDVTSFGAIGDCSTDDTSAFKMAWDAACMSTGPKSA-LLLVPYTFCFLVKPTTFN 101
Query: 128 LTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITG 187
L L D I++ + + WP Y R+ + F L I G
Sbjct: 102 GPCRTNLVLQIDGFIVSPDGPRSWPS-------NYQRQ-----WMMFYRVNGLS---IQG 146
Query: 188 HNGTINGQGQAWWKK--YRQKLLNNTR--GPL-----VQIMWSSDILISNITLRDSPFWT 238
+G ING+GQ WW K LN T GP +++ SS + I I +S +
Sbjct: 147 -SGVINGRGQKWWNLPCKPHKGLNGTTQTGPCDSPVAIRLFQSSKVRIQGINFMNSAQFH 205
Query: 239 LHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCY--------ISVGDDAIAIKSGW---D 287
+ +C +V + + I + + + IE+ + IS GDD I+I +G D
Sbjct: 206 VRFDNCSDVVVDSVIIKAPASSPNTDGIHIENTHNVQIRNSMISNGDDCISIGAGCFNVD 265
Query: 288 QYGIAYGRPSMNILIRNLVVRS 309
+ G PS I I +L V +
Sbjct: 266 IKNVTCG-PSHGISIGSLGVHN 286
>TAIR|locus:2054396 [details] [associations]
symbol:PGAZAT "polygalacturonase abscission zone A.
thaliana" species:3702 "Arabidopsis thaliana" [GO:0004650
"polygalacturonase activity" evidence=IEA;ISS;IDA] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005975 "carbohydrate
metabolic process" evidence=IEA;ISS] [GO:0009830 "cell wall
modification involved in abscission" evidence=RCA;TAS] [GO:0009901
"anther dehiscence" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010227 "floral organ abscission" evidence=IMP]
InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502 GO:GO:0005618
GO:GO:0005576 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005975
EMBL:AC002339 CAZy:GH28 eggNOG:COG5434 HOGENOM:HOG000237792
ProtClustDB:PLN02218 GO:GO:0004650 GO:GO:0009901 GO:GO:0009830
GO:GO:0010047 Gene3D:2.160.20.10 InterPro:IPR006626
InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
EMBL:AY078936 EMBL:AF083793 IPI:IPI00518873 PIR:H84846
RefSeq:NP_850359.1 UniGene:At.42781 ProteinModelPortal:Q8RY29
SMR:Q8RY29 STRING:Q8RY29 EnsemblPlants:AT2G41850.1 GeneID:818785
KEGG:ath:AT2G41850 GeneFarm:30 TAIR:At2g41850 InParanoid:Q8RY29
OMA:QINDITC PhylomeDB:Q8RY29 Genevestigator:Q8RY29 GO:GO:0010227
Uniprot:Q8RY29
Length = 433
Score = 104 (41.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/111 (23%), Positives = 54/111 (48%)
Query: 187 GHNGTINGQGQAWWKKY--RQKLLNNTRGPLVQIMWSS-DILISNITLRDSPFWTLHPYD 243
G G ++G G+ WW+ R K T+ P ++S +++ N+ +R++ +
Sbjct: 163 GDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEK 222
Query: 244 CKNVTIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSG 285
C NV + N ++ I + ++ +++ + + I GDD I+I+SG
Sbjct: 223 CSNVQVSNVVVTAPADSPNTDGIHITNT-QNIRVSESIIGTGDDCISIESG 272
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 32/86 (37%), Positives = 41/86 (47%)
Query: 47 IWQRNAVVGGFSFLRWGVASRPIPRLR-PAAFNLTDFGGVGDGVTLNTEAFQRAVYAISK 105
I +R + G SF+R AS LR P +++DFG GDG T +T+AF V A K
Sbjct: 45 IKRREDITGLRSFVR---AS-----LRTPTTVSVSDFGAKGDGKTDDTQAF---VNAWKK 93
Query: 106 LGKKGGG-QLNVPPGR-WLTAPFNLT 129
G L VP G +L LT
Sbjct: 94 ACSSNGAVNLLVPKGNTYLLKSIQLT 119
>TAIR|locus:2167185 [details] [associations]
symbol:AT5G17200 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005886 "plasma membrane" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005576 GO:GO:0005975 CAZy:GH28
eggNOG:COG5434 HOGENOM:HOG000237792 KO:K01184 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126 EMBL:AB005238
HSSP:P26214 IPI:IPI00532874 RefSeq:NP_197222.1 UniGene:At.54880
ProteinModelPortal:Q9FFI9 SMR:Q9FFI9 STRING:Q9FFI9
EnsemblPlants:AT5G17200.1 GeneID:831584 KEGG:ath:AT5G17200
TAIR:At5g17200 InParanoid:Q9FFI9 OMA:GSSHINI PhylomeDB:Q9FFI9
ProtClustDB:CLSN2914874 Genevestigator:Q9FFI9 Uniprot:Q9FFI9
Length = 421
Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 66/242 (27%), Positives = 109/242 (45%)
Query: 78 NLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLA 137
++T FG +GDG T +T+AF +A A+ K G ++ VP G+ F L +
Sbjct: 40 SVTSFGAIGDGKTDDTKAFLKAWEAVCKGGHNR--KILVPQGK----TFMLKPLTFIGPC 93
Query: 138 DDAEI-LAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQG 196
+ I L+I L+ P GY + R+ ++I ++ +V+TG GTI+G+G
Sbjct: 94 KSSTISLSIRGN----LVAP----GY--TWYAGRYTTWISFDSINGLVVTG-GGTIDGRG 142
Query: 197 QAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISK 256
WW +NN R + + + ISN+ +SP + +N+ +R ++
Sbjct: 143 SLWWGN-----VNN-RPCAMHFNNCNGLRISNLRHLNSPRNHVGLSCSQNIEVRGLRMTA 196
Query: 257 ---------IQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIA--YGRPSMNILIRNL 305
I + +C + I D I+ GDD IAI SG I + P I + +L
Sbjct: 197 PGDSPNTDGIDI-SNCIGVHIHDSVIATGDDCIAINSGSSHINITGIFCGPGHGISVGSL 255
Query: 306 VV 307
V
Sbjct: 256 GV 257
>TAIR|locus:2063114 [details] [associations]
symbol:AT2G40310 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502 GO:GO:0005576
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005975 EMBL:AF085279
CAZy:GH28 eggNOG:COG5434 HOGENOM:HOG000237792 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126 EMBL:AC007020
ProtClustDB:CLSN2679499 IPI:IPI00533646 PIR:H84827
RefSeq:NP_181560.1 UniGene:At.53084 ProteinModelPortal:Q9S761
SMR:Q9S761 EnsemblPlants:AT2G40310.1 GeneID:818623
KEGG:ath:AT2G40310 TAIR:At2g40310 InParanoid:Q9S761 OMA:CHESGAM
PhylomeDB:Q9S761 ArrayExpress:Q9S761 Genevestigator:Q9S761
Uniprot:Q9S761
Length = 404
Score = 92 (37.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 37/124 (29%), Positives = 66/124 (53%)
Query: 173 SFIHGQNLKDVVITGHNGTINGQG-QAWWKKYRQKLLNNTRGPLVQ-IMWSSDILISNIT 230
++I+ + + ++ I+G +GT++GQG Q+W K LN + + + ++ I +IT
Sbjct: 110 TWINFRYINNLSISG-SGTLDGQGKQSWPLNDCHKNLNCPKLAMTMGFAFVNNSNIKDIT 168
Query: 231 LRDSP-----FWTLHPYDCKNVTIRNAFISK----IQLFDSCEDMVIEDCYISVGDDAIA 281
+S F+++H ++ VTI + S I++ SC +M I + I GDD IA
Sbjct: 169 SLNSKMGHFNFFSVHHFNITGVTITASGDSPNTDGIKM-GSCSNMHISNTNIGTGDDCIA 227
Query: 282 IKSG 285
I SG
Sbjct: 228 ILSG 231
Score = 80 (33.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 58 SFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVP 117
SFL VASRP +RP FN+ G DG T N F ++++ + K G ++ VP
Sbjct: 14 SFLFIFVASRPT--IRPKTFNVQRHGSKPDGKTDNANVFT-SIWSRACKRKSGSSKIYVP 70
Query: 118 PG 119
G
Sbjct: 71 KG 72
>TAIR|locus:2222657 [details] [associations]
symbol:AT5G14650 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005576 GO:GO:0005975 CAZy:GH28
eggNOG:COG5434 HOGENOM:HOG000237792 KO:K01184 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126 EMBL:AL163792
IPI:IPI00547360 PIR:T48638 RefSeq:NP_196969.1 UniGene:At.31902
ProteinModelPortal:Q9LYJ5 SMR:Q9LYJ5 STRING:Q9LYJ5 PRIDE:Q9LYJ5
EnsemblPlants:AT5G14650.1 GeneID:831317 KEGG:ath:AT5G14650
TAIR:At5g14650 InParanoid:Q9LYJ5 OMA:NYINIKG PhylomeDB:Q9LYJ5
ProtClustDB:CLSN2916713 Genevestigator:Q9LYJ5 Uniprot:Q9LYJ5
Length = 435
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 57/225 (25%), Positives = 100/225 (44%)
Query: 78 NLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGR-WLTAPFNLTSHMTLFL 136
N+ D G GDG + +T+AF+ A K+ L VP G +L P + FL
Sbjct: 52 NVLDHGAKGDGTSDDTKAFEDAWQVACKVA---ASTLLVPSGSTFLVGPVS-------FL 101
Query: 137 ADDA-EILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQ 195
+ E + + E ++ P + +G G +I + L+ + I G G I+G+
Sbjct: 102 GKECKEKIVFQLEG--KIIAPTSASAWGS---G--LLQWIEFKALQGITIKG-KGIIDGR 153
Query: 196 GQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFIS 255
G WW + T+ ++ S+ + +S IT+++SP L +C ++ + + S
Sbjct: 154 GSVWWNDMMGTKMPRTKPTALRFYGSNGVTVSGITIQNSPQTHLKFDNCISIQVSDFTTS 213
Query: 256 K---------IQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGI 291
I L +S +D VI ++ GDD I+I++G I
Sbjct: 214 SPGDSPNTDGIHLQNS-QDAVIYRSTLACGDDCISIQTGCSNINI 257
>TAIR|locus:2119485 [details] [associations]
symbol:AT4G13760 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502 GO:GO:0005576
EMBL:CP002687 GO:GO:0005975 GO:GO:0004650 Gene3D:2.160.20.10
InterPro:IPR006626 InterPro:IPR012334 InterPro:IPR011050
SMART:SM00710 SUPFAM:SSF51126 IPI:IPI00536611 RefSeq:NP_193112.2
UniGene:At.54312 ProteinModelPortal:F4JTS9 SMR:F4JTS9
EnsemblPlants:AT4G13760.1 GeneID:827010 KEGG:ath:AT4G13760
OMA:NPRITIS ArrayExpress:F4JTS9 Uniprot:F4JTS9
Length = 404
Score = 86 (35.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 36/123 (29%), Positives = 57/123 (46%)
Query: 173 SFIHGQNLKDVVITGHNGTINGQGQAWW------KKYRQKLLNNTRG-PLVQIMWSSDIL 225
++I + + D+ I+G +GT++GQG+ W K L T G V DI
Sbjct: 110 TWIKFKYINDLSISG-SGTLDGQGKQSWPLNDCHKNPNCPKLAMTMGFAFVNNSNIKDIT 168
Query: 226 ISNITLRDSPFWTLHPYDCKNVTIR---NAFISKIQLFDSCEDMVIEDCYISVGDDAIAI 282
N + F+++H ++ VTI N+ + SC ++ I + I GDD IAI
Sbjct: 169 SLNSKMGHFNFFSVHHFNITGVTITAPGNSPNTDGIKMGSCSNIHISNTNIGTGDDCIAI 228
Query: 283 KSG 285
SG
Sbjct: 229 LSG 231
Score = 84 (34.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 58 SFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVP 117
SFL VASRP +RP FN+ G DG T NT F +V+ + K G ++ VP
Sbjct: 14 SFLFIVVASRPT--IRPKMFNVQRHGSKSDGKTDNTNVFT-SVWNRACRRKSGSSKIYVP 70
Query: 118 PG 119
G
Sbjct: 71 KG 72
>TAIR|locus:2030803 [details] [associations]
symbol:AT1G43100 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005576 GO:GO:0005975 CAZy:GH28
eggNOG:COG5434 HOGENOM:HOG000237792 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126 EMBL:AC026757
HSSP:P26509 ProtClustDB:CLSN2679499 IPI:IPI00518656 PIR:C96498
RefSeq:NP_175005.1 UniGene:At.52009 ProteinModelPortal:Q9C8C2
SMR:Q9C8C2 EnsemblPlants:AT1G43100.1 GeneID:840909
KEGG:ath:AT1G43100 TAIR:At1g43100 InParanoid:Q9C8C2
PhylomeDB:Q9C8C2 Genevestigator:Q9C8C2 Uniprot:Q9C8C2
Length = 444
Score = 85 (35.0 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 58 SFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVP 117
SFL VASRP +RP FN+ +G DG T N AF +V+ + G ++ VP
Sbjct: 14 SFLFIAVASRPT--IRPKVFNVRRYGSRPDGKTDNANAFT-SVWKRACTRISGSSKIYVP 70
Query: 118 PGRW 121
G++
Sbjct: 71 KGKF 74
Score = 83 (34.3 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 37/126 (29%), Positives = 64/126 (50%)
Query: 173 SFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGP-LVQIM---WSSDILISN 228
++I+ + + ++ I+G +GT++GQG+ W NT P L M + ++ I +
Sbjct: 110 TWINFRYINNLSISG-SGTLDGQGKYSWPL--NDCHKNTNCPELAMTMGFAFVNNSRIKD 166
Query: 229 ITLRDSP-----FWTLHPYDCKNVTIRNAFISK----IQLFDSCEDMVIEDCYISVGDDA 279
IT +S F+++H ++ VTI S I++ SC ++ I + I GDD
Sbjct: 167 ITSLNSKMGHFNFFSVHRFNITGVTITAPGDSPNTDGIKM-GSCSNIHISNTNIGTGDDC 225
Query: 280 IAIKSG 285
IAI SG
Sbjct: 226 IAILSG 231
>TAIR|locus:2028844 [details] [associations]
symbol:AT1G23460 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502 EMBL:CP002684
GO:GO:0005576 GO:GO:0005975 GO:GO:0004650 Gene3D:2.160.20.10
InterPro:IPR006626 InterPro:IPR012334 InterPro:IPR011050
SMART:SM00710 SUPFAM:SSF51126 IPI:IPI00538330 RefSeq:NP_173760.2
UniGene:At.49907 ProteinModelPortal:F4I672 SMR:F4I672 PRIDE:F4I672
EnsemblPlants:AT1G23460.1 GeneID:838954 KEGG:ath:AT1G23460
OMA:HITESTN Uniprot:F4I672
Length = 460
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 58/220 (26%), Positives = 90/220 (40%)
Query: 78 NLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGR-WLT--APFNLTSHMTL 134
N+ FG GDGV+ +T+AF V A SK VP GR +L FN L
Sbjct: 68 NVDTFGAAGDGVSDDTQAF---VSAWSKACSTSKSVFLVPEGRRYLVNATKFNGPCEQKL 124
Query: 135 FLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTING 194
+ D I+A + W + R ++ LK VV G G I+G
Sbjct: 125 IIQIDGTIVAPDEPSNW-------------DSKFQRI--WLEFSKLKGVVFQG-KGVIDG 168
Query: 195 QGQAWWKKYRQKLLNNT--RGPL-VQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN 251
G WW +K +N P + I SS + +S +T+++S +V +
Sbjct: 169 SGSKWWAASCKKNKSNPCKSAPTALTIESSSGVKVSGLTIQNSQQMNFIIARSDSVRVSK 228
Query: 252 AFISK---------IQLFDSCEDMVIEDCYISVGDDAIAI 282
+S I + S +++++DC I GDD ++I
Sbjct: 229 VMVSSPGDSPNTDGIHITGST-NVILQDCKIGTGDDCVSI 267
>TAIR|locus:2088842 [details] [associations]
symbol:AT3G26610 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005576 GO:GO:0005975 CAZy:GH28
eggNOG:COG5434 HOGENOM:HOG000237792 GO:GO:0004650
Gene3D:2.160.20.10 InterPro:IPR006626 InterPro:IPR012334
InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126 EMBL:X98130
EMBL:AB028611 EMBL:AK117620 IPI:IPI00530630 RefSeq:NP_189293.1
UniGene:At.37184 ProteinModelPortal:Q38958 SMR:Q38958
EnsemblPlants:AT3G26610.1 GeneID:822270 KEGG:ath:AT3G26610
TAIR:At3g26610 InParanoid:Q38958 OMA:QWLNFKW PhylomeDB:Q38958
ProtClustDB:CLSN2684866 Genevestigator:Q38958 Uniprot:Q38958
Length = 470
Score = 122 (48.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 57/239 (23%), Positives = 104/239 (43%)
Query: 65 ASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPG-RWLT 123
A P P FN+ +G GDGV+ +++A A A K+ GG++ +P G ++L
Sbjct: 55 APAPYPSTNEGVFNIFSYGAKGDGVSDDSKALVGAWKAACKVV---GGKVEIPAGTQFLV 111
Query: 124 APFNLTSHMTLFLADDAEILAIENEKY--WPLMPPLPSYGYGREHHGPRFGSFIHGQNLK 181
L E + + EK WP + F +++ + +
Sbjct: 112 KAVTLQGPCKEETVVQIEGILVAPEKIGSWP--------------NSSLF-QWLNFKWVS 156
Query: 182 DVVITGHNGTINGQGQAWWK--KYRQKLLNNTRGPL----VQIMWSSDILISNITLRDSP 235
+ I G +GT+NG+G WW Y+ + N P+ ++ S+++ + +I++ +SP
Sbjct: 157 HLTIQG-SGTLNGRGYNWWNLDTYQTQTRNKYIPPMKPTALRFYSSNNVTVRDISIVNSP 215
Query: 236 FWTLHPYDCKNVTIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSG 285
L D V + N IS I L + ++ I+ I+ GDD ++I++G
Sbjct: 216 LCHLKFDDSDGVKVNNITISSPENSPNTDGIHL-QNTRNVEIQHSNIACGDDCVSIQTG 273
Score = 37 (18.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 262 SC-EDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVV 307
+C D+++ED I + IK+ G+ NI ++++ V
Sbjct: 302 ACVSDIIVEDISIQNTLAGVRIKTWQGGLGVVKNLTFSNIQVKDVKV 348
>TAIR|locus:2016314 [details] [associations]
symbol:AT1G80170 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA]
[GO:0009505 "plant-type cell wall" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000743 Pfam:PF00295
PROSITE:PS00502 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005576 GO:GO:0005975 GO:GO:0009505 CAZy:GH28 eggNOG:COG5434
HOGENOM:HOG000237792 GO:GO:0004650 Gene3D:2.160.20.10
InterPro:IPR006626 InterPro:IPR012334 InterPro:IPR011050
SMART:SM00710 SUPFAM:SSF51126 EMBL:AC009322 EMBL:AY046002
EMBL:AY142668 IPI:IPI00518842 PIR:D96833 RefSeq:NP_565232.1
UniGene:At.11620 ProteinModelPortal:Q94AJ5 SMR:Q94AJ5 IntAct:Q94AJ5
STRING:Q94AJ5 EnsemblPlants:AT1G80170.1 GeneID:844357
KEGG:ath:AT1G80170 GeneFarm:519 TAIR:At1g80170 InParanoid:Q94AJ5
OMA:KWLYFHG PhylomeDB:Q94AJ5 ProtClustDB:PLN02793
Genevestigator:Q94AJ5 Uniprot:Q94AJ5
Length = 444
Score = 117 (46.2 bits), Expect = 0.00039, P = 0.00039
Identities = 73/279 (26%), Positives = 111/279 (39%)
Query: 32 TLFTVLWLAAFASVFIWQRNAVVGGFSFLRWGVASRPIPRLRPAAFNLT---DFGGVGDG 88
TL T+L L AS NA F L + R RP + L +FG G+G
Sbjct: 8 TLVTLLLLLVVASSLALTANA--NSFESLLQ-LPRRQSRSTRPRSERLLHVGNFGAKGNG 64
Query: 89 VTLNTEAFQRAVYAISKLGKKGGGQLNVPPG-RWLTAPFNLTS--HMTLFLADDAEILAI 145
VT +T+AF A + K ++ VP L P +L+ L L I+A
Sbjct: 65 VTDDTKAFADAWK--TACSSKVKTRILVPENYTCLLRPIDLSGPCKARLTLQISGTIIAP 122
Query: 146 ENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKY-R 204
+ W G R R + HG L + + G GT+NG GQ WW++ +
Sbjct: 123 NDPDVWE--------GLNR-----RKWLYFHG--LSRLTVEG-GGTVNGMGQEWWERSCK 166
Query: 205 QKLLNNTRGPLVQIMWSS--DILISNITLRDSPFWTLHPYDCKNVTIRNAFI-------- 254
N RG + + ++ + N+ + DS + C+ VTI +
Sbjct: 167 HNHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPN 226
Query: 255 -SKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIA 292
I + S +VI++ +S GDD I+I Q I+
Sbjct: 227 TDGIHISVS-RGIVIDNTTVSTGDDCISIVKNSTQISIS 264
>TAIR|locus:2030797 [details] [associations]
symbol:AT1G43080 species:3702 "Arabidopsis thaliana"
[GO:0004650 "polygalacturonase activity" evidence=IEA;ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS]
InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005576 GO:GO:0005975 CAZy:GH28
HOGENOM:HOG000237792 GO:GO:0004650 Gene3D:2.160.20.10
InterPro:IPR006626 InterPro:IPR012334 InterPro:IPR011050
SMART:SM00710 SUPFAM:SSF51126 EMBL:AC026757 HSSP:P26509
ProtClustDB:CLSN2679499 EMBL:DQ056483 IPI:IPI00545441 PIR:A96498
RefSeq:NP_175003.1 UniGene:At.52007 ProteinModelPortal:Q9C8C4
SMR:Q9C8C4 PRIDE:Q9C8C4 EnsemblPlants:AT1G43080.1 GeneID:840907
KEGG:ath:AT1G43080 TAIR:At1g43080 InParanoid:Q9C8C4 OMA:VCENING
PhylomeDB:Q9C8C4 Genevestigator:Q9C8C4 Uniprot:Q9C8C4
Length = 404
Score = 114 (45.2 bits), Expect = 0.00072, P = 0.00072
Identities = 68/241 (28%), Positives = 104/241 (43%)
Query: 58 SFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVP 117
SFL VASRP +RP FN+ +G DG T N AF +V+ + G ++ VP
Sbjct: 14 SFLFIAVASRPT--IRPKVFNVRRYGSRPDGKTDNANAFT-SVWKRACTRISGSSKIYVP 70
Query: 118 PGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHG 177
G + + E + I+ P P R+ + +F +
Sbjct: 71 KGTFYLGGVEFVGPCK----NPIEFV-IDGTLLAPANP--------RDIKQDTWINFRYI 117
Query: 178 QNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGP-LVQIM---WSSDILISNITLRD 233
NL I+G +GT++GQG+ W NT P L M + ++ I +IT +
Sbjct: 118 NNLS---ISG-SGTLDGQGKYSWPL--NDCHKNTNCPKLAMTMGFAFVNNSRIKDITSLN 171
Query: 234 SP-----FWTLHPYDCKNVTIRNAFISK----IQLFDSCEDMVIEDCYISVGDDAIAIKS 284
S F+++H ++ VTI S I++ SC ++ I + I GDD IAI S
Sbjct: 172 SKMGHFNFFSVHRFNITGVTITAPGDSPNTDGIKM-GSCSNIHISNTNIGTGDDCIAILS 230
Query: 285 G 285
G
Sbjct: 231 G 231
>TAIR|locus:2077407 [details] [associations]
symbol:QRT2 "QUARTET 2" species:3702 "Arabidopsis
thaliana" [GO:0004650 "polygalacturonase activity"
evidence=IEA;ISS;IDA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA;ISS] [GO:0009830 "cell wall modification involved in
abscission" evidence=TAS] [GO:0009901 "anther dehiscence"
evidence=IMP] [GO:0010047 "fruit dehiscence" evidence=IMP]
[GO:0048235 "pollen sperm cell differentiation" evidence=IMP]
[GO:0045490 "pectin catabolic process" evidence=IMP]
InterPro:IPR000743 Pfam:PF00295 PROSITE:PS00502 GO:GO:0005618
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005576 GO:GO:0045490
CAZy:GH28 eggNOG:COG5434 HOGENOM:HOG000237792 GO:GO:0004650
GO:GO:0009901 GO:GO:0009830 GO:GO:0010047 Gene3D:2.160.20.10
InterPro:IPR006626 InterPro:IPR012334 InterPro:IPR011050
SMART:SM00710 SUPFAM:SSF51126 EMBL:AC013483 GO:GO:0048235
IPI:IPI00516594 RefSeq:NP_187454.2 UniGene:At.40276
ProteinModelPortal:Q9SFB7 SMR:Q9SFB7 STRING:Q9SFB7
EnsemblPlants:AT3G07970.1 GeneID:819988 KEGG:ath:AT3G07970
TAIR:At3g07970 InParanoid:Q9SFB7 OMA:NIRLENA PhylomeDB:Q9SFB7
ProtClustDB:CLSN2690525 Genevestigator:Q9SFB7 Uniprot:Q9SFB7
Length = 439
Score = 104 (41.7 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 40/143 (27%), Positives = 66/143 (46%)
Query: 178 QNLKDVVITGHNGTINGQGQAWWKKYRQ--KLLNNTRGPL-VQIMWSSDILISNITLRDS 234
+N+ ++ + G G I+G G WW K + L P V + +++ +SNI L ++
Sbjct: 156 ENVNNLRVEG-GGRIDGNGHIWWPKSCKINPQLPCLGAPTAVTFVECNNLRVSNIRLENA 214
Query: 235 PFWTLHPYDCKNVTIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSG 285
L DCKNV N ++ I + ++++I+D + GDD I+I SG
Sbjct: 215 QQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHV-SGTQNILIQDSIVRTGDDCISIVSG 273
Query: 286 WDQY---GIAYGRPSMNILIRNL 305
+ GI G P I I +L
Sbjct: 274 SENVRATGITCG-PGHGISIGSL 295
Score = 51 (23.0 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 70 PRLRPAAFNLTDFGGVGDGVTLNTEAFQRA 99
PR P +FN+ FG +G +++AF +A
Sbjct: 64 PRSSPRSFNVNTFGAKANGND-DSKAFMKA 92
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.140 0.457 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 312 312 0.00080 116 3 11 22 0.48 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 624 (66 KB)
Total size of DFA: 249 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.39u 0.11s 25.50t Elapsed: 00:00:01
Total cpu time: 25.40u 0.11s 25.51t Elapsed: 00:00:01
Start: Mon May 20 20:14:51 2013 End: Mon May 20 20:14:52 2013