BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021449
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001
PE=1 SV=1
Length = 491
Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/251 (50%), Positives = 162/251 (64%), Gaps = 18/251 (7%)
Query: 72 LRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSH 131
R + +L DFGGVGDG TLNT+AFQ AV +SK G +GG QL VP G+WLT F+LTSH
Sbjct: 58 CRAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSH 117
Query: 132 MTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGT 191
TLFL DA +LA ++ WP++ PLPSYG GR+ R+ S I G NL DV+ITG NGT
Sbjct: 118 FTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGT 177
Query: 192 INGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN 251
I+GQG WW+++ L TR L+++M+S+DI ISN+TL +SP W +HP V RN
Sbjct: 178 IDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHP-----VYSRN 232
Query: 252 AFISKIQLF-------------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSM 298
I I + DSC + IEDCYI GDD +A+KSGWD+YGIAYG P+
Sbjct: 233 ILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTK 292
Query: 299 NILIRNLVVRS 309
++IR L S
Sbjct: 293 QLVIRRLTCIS 303
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana
GN=At3g15720 PE=1 SV=1
Length = 456
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 32/219 (14%)
Query: 76 AFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPG-RWLTAPFNLTSHMTL 134
A ++T FG VGDGVT +++AF +A A+ G GQ VP G ++ P L
Sbjct: 23 ALDVTQFGAVGDGVTDDSQAFLKAWEAVCS--GTGDGQFVVPAGMTFMLQP--------L 72
Query: 135 FLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTING 194
+ + + L+ P G + +I +++ +VI G +G ING
Sbjct: 73 KFQGSCKSTPVFVQMLGKLVAPSKGNWKGDKDQ------WILFTDIEGLVIEG-DGEING 125
Query: 195 QGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFI 254
QG +WW+ +R ++ +++ +S +T DSP +H +C VTI + I
Sbjct: 126 QGSSWWEH------KGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRI 179
Query: 255 SKIQL--------FDSCEDMVIEDCYISVGDDAIAIKSG 285
+ + + ++VI+DC I+ GDD IAI SG
Sbjct: 180 NAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG 218
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1
Length = 410
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 42/234 (17%)
Query: 75 AAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT--SHM 132
+F++T G G+G T +T+A Q A +A S G G + +P G +L N T
Sbjct: 39 GSFDITKLGASGNGKTDSTKAVQEA-WA-SACGGTGKQTILIPKGDFLVGQLNFTGPCKG 96
Query: 133 TLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTI 192
+ + D +LA + L Y +EH G++I + ++VITG G +
Sbjct: 97 DVTIQVDGNLLATTD---------LSQY---KEH-----GNWIEILRVDNLVITGK-GNL 138
Query: 193 NGQGQAWW------KKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKN 246
+GQG A W KKY K+L N+ + + + ++ +S +TL +S F+ ++ Y CKN
Sbjct: 139 DGQGPAVWSKNSCTKKYDCKILPNS----LVMDFVNNGEVSGVTLLNSKFFHMNMYQCKN 194
Query: 247 VTIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGI 291
+ I++ ++ I + DS + I + I VGDD I+I G + I
Sbjct: 195 MLIKDVTVTAPGDSPNTDGIHMGDS-SGITITNTVIGVGDDCISIGPGTSKVNI 247
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1
Length = 410
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 42/234 (17%)
Query: 75 AAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT--SHM 132
+F++T G G+G T +T+A Q A +A S G G + +P G +L P N T
Sbjct: 39 GSFDITKLGASGNGKTDSTKAVQEA-WA-SACGGTGKQTILIPKGDFLVGPLNFTGPCKG 96
Query: 133 TLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTI 192
+ + + +LA + L Y ++H G++I + ++VITG G +
Sbjct: 97 DVTIQVNGNLLATTD---------LSQY---KDH-----GNWIEILRVDNLVITGK-GKL 138
Query: 193 NGQGQAWW------KKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKN 246
+GQG A W KKY K+L N+ + + + ++ +S ITL +S F+ ++ Y CK+
Sbjct: 139 DGQGPAVWSKNSCVKKYDCKILPNS----LVMDFVNNGEVSGITLLNSKFFHMNMYKCKD 194
Query: 247 VTIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGI 291
+ I++ ++ I + DS + I + I VGDD I+I G + I
Sbjct: 195 MLIKDVNVTAPGDSPNTDGIHMGDS-SGVTITNTVIGVGDDCISIGPGTSKVNI 247
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1
Length = 410
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 42/235 (17%)
Query: 75 AAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT--SHM 132
+F++T G G+G T +T+A Q A +A S G G + +P G +L N T
Sbjct: 39 GSFDITKLGASGNGKTDSTKAVQEA-WA-SACGGTGKQTILIPKGDFLVGQLNFTGPCKG 96
Query: 133 TLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTI 192
+ + D +LA + L Y ++H G++I + ++VITG G +
Sbjct: 97 DVTIQVDGNLLATTD---------LSQY---KDH-----GNWIEILRVDNLVITGK-GNL 138
Query: 193 NGQGQAWW------KKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKN 246
+GQG A W KKY K+L N+ + + + ++ +S +TL +S F+ ++ Y CK+
Sbjct: 139 DGQGPAVWSKNSCTKKYDCKILPNS----LVMDFVNNGEVSGVTLLNSKFFHMNMYRCKD 194
Query: 247 VTIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIA 292
+ I++ ++ I + DS + I + I VGDD I+I G + I
Sbjct: 195 MLIKDVTVTAPGDSPNTDGIHMGDS-SGITITNTVIGVGDDCISIGPGTSKVNIT 248
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1
Length = 514
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 94/249 (37%), Gaps = 51/249 (20%)
Query: 77 FNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWL---TAPFNLTSHMT 133
FN+ +G VGDG +TEAF A K K L VP + F
Sbjct: 59 FNVEQYGAVGDGKHDSTEAFATTWNAACK---KASAVLLVPANKKFFVNNLVFRGPCQPH 115
Query: 134 LFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTIN 193
L D I+A + W ++ L D + G G I+
Sbjct: 116 LSFKVDGTIVAQPDPARWK-----------------NSKIWLQFAQLTDFNLMG-TGVID 157
Query: 194 GQGQAWWKKY------RQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNV 247
GQGQ WW R + R ++I +S + + +TL +SP + L +C+ V
Sbjct: 158 GQGQQWWAGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGV 217
Query: 248 TIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSM 298
I+ I I +F S + IE C I GDD IAI +G S
Sbjct: 218 KIQGLKIKAPRDSPNTDGIDIFAS-KRFHIEKCVIGTGDDCIAIGTG-----------SS 265
Query: 299 NILIRNLVV 307
NI I++L+
Sbjct: 266 NITIKDLIC 274
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100
PE=2 SV=1
Length = 475
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 36/255 (14%)
Query: 75 AAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTL 134
F++T FG VGDG +T AFQ A A + G + P G F +TS T+
Sbjct: 78 CVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVES---GVVLAPEG----GVFKITS--TI 128
Query: 135 FLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTING 194
F L + + LMPP + + + ++ F L +G GT+ G
Sbjct: 129 FSGPCKPGLVFQLDGV--LMPPDGPEEWPEKDNKNQWLVFYR---LDGFTFSG-KGTVEG 182
Query: 195 QGQAWW----KKYRQKLLNNTRGP-----LVQIMWSSDILISNITLRDSPFWTLHPYDCK 245
GQ WW K +R +++ GP +++ S++I + + +++SP + + C+
Sbjct: 183 NGQKWWDLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQ 242
Query: 246 NVTIRNAFISKIQL--------FDSCEDMVIEDCYISVGDDAIAIKSGW---DQYGIAYG 294
V I IS +L + + I + +S GDD I+I +G D G+ G
Sbjct: 243 GVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCG 302
Query: 295 RPSMNILIRNLVVRS 309
PS I I +L V +
Sbjct: 303 -PSHGISIGSLGVHN 316
>sp|P15922|PEHX_ERWCH Exo-poly-alpha-D-galacturonosidase OS=Erwinia chrysanthemi GN=pehX
PE=1 SV=1
Length = 602
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 74 PAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMT 133
P N+T +G GDG TLNT A Q+A+ A G +++VP G + T L S MT
Sbjct: 149 PKVINITQYGAKGDGTTLNTSAIQKAIDACPT-----GCRIDVPAGVFKTGALWLKSDMT 203
Query: 134 LFLADDAEILAIENEKYWPLMPPLPSY 160
L L A +L +N +P + SY
Sbjct: 204 LNLLQGATLLGSDNAADYPDAYKIYSY 230
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1
Length = 507
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 99/253 (39%), Gaps = 59/253 (23%)
Query: 77 FNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFL 136
FN+ +G VGDG +T+AF++ W A L++ +FL
Sbjct: 60 FNVEHYGAVGDGKHDSTDAFEKT---------------------WNAACNKLSA---VFL 95
Query: 137 ADDAEILAIENEKYWPLMPPLPSY-------GYGREHHGPRFGSFIHGQNLKDVVITGHN 189
+ + N ++ P S+ Y ++H L D + G
Sbjct: 96 VPANKKFVVNNLVFYGPCQPHFSFKVDGTIAAYPDPAKWKNSKIWMHFARLTDFNLMG-T 154
Query: 190 GTINGQGQAWW----KKYRQKLLNNTRG--PLVQIMWSSDILISNITLRDSPFWTLHPYD 243
G I+GQG WW K + + N +G ++I +S + + +TL +SP + L +
Sbjct: 155 GVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGE 214
Query: 244 CKNVTIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYG 294
C V I+ I I +F S + IE C I GDD +A+ +G
Sbjct: 215 CDGVKIQGIKIKAPRDSPNTDGIDIFAS-KRFEIEKCTIGTGDDCVAVGTG--------- 264
Query: 295 RPSMNILIRNLVV 307
S NI I++L
Sbjct: 265 --SSNITIKDLTC 275
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1
Length = 514
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 59 FLRWGVASRPIPRLRPAA---FNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLN 115
+LR + R + R A FN+ +G VGDG TEAF A A K K L
Sbjct: 38 YLRSNRSLRKVEHSRHDAINIFNVEKYGAVGDGKHDCTEAFSTAWQAACK---KPSAMLL 94
Query: 116 VPPGRWLTAP---FNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFG 172
VP + FN D I A +N W R
Sbjct: 95 VPGNKKFVVNNLFFNGPCQPHFTFKVDGIIAAYQNPASW---------------KNNRI- 138
Query: 173 SFIHGQNLKDVVITGHNGTINGQGQAWWKKY------RQKLLNNTRGPLVQIMWSSDILI 226
++ L + G G I+GQG+ WW R+ + R ++ +S+ ++I
Sbjct: 139 -WLQFAKLTGFTLMG-KGVIDGQGKQWWAGQCKWVNGREICNDRDRPTAIKFDFSTGLII 196
Query: 227 SNITLRDSPFWTLHPYDCKNVTIRNAFISK---------IQLFDSCEDMVIEDCYISVGD 277
+ L +SP + L +C+ V I I+ I +F S ++ ++ I GD
Sbjct: 197 QGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFAS-KNFHLQKNTIGTGD 255
Query: 278 DAIAIKSGWDQYGIAYGRPSMNILIRNLVV 307
D +AI +G S NI+I +L+
Sbjct: 256 DCVAIGTG-----------SSNIVIEDLIC 274
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1
Length = 462
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 36/231 (15%)
Query: 70 PRLRPAA-FNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGR---WLTAP 125
P P ++ DFG GDG T +T+AF++A K G L VP +
Sbjct: 77 PETSPDTDISVDDFGARGDG-TDDTKAFEKAW----KDACSSGSVLIVPENKNYLLKQIT 131
Query: 126 FNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVI 185
F+ L + I A ++ W G+ R+ +I +++ ++ +
Sbjct: 132 FSGPCKSDLRVKIRGTIEASSDQSDW--------VGHNRKR-------WIEFEDISNLTL 176
Query: 186 TGHNGTINGQGQAWWKKY--RQKLLNNTRGPLVQIMWSS-DILISNITLRDSPFWTLHPY 242
G GT NG G+ WW R+K L P S ++++S+++++DS L
Sbjct: 177 EG-GGTSNGNGETWWDSSCKRKKSLPCKSAPTALTFRSCKNLIVSDLSIKDSQKMHLSFD 235
Query: 243 DCKNVTIRNAFISKIQLFDSCEDMVIE--------DCYISVGDDAIAIKSG 285
C++V N ++ + + + + I + I GDD I+I+SG
Sbjct: 236 KCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESG 286
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana
GN=At1g80170 PE=1 SV=1
Length = 444
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 34/231 (14%)
Query: 77 FNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPG-RWLTAPFNLT--SHMT 133
++ +FG G+GVT +T+AF A + K ++ VP L P +L+
Sbjct: 53 LHVGNFGAKGNGVTDDTKAFADAWK--TACSSKVKTRILVPENYTCLLRPIDLSGPCKAR 110
Query: 134 LFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTIN 193
L L I+A + W G R R + HG L + + G GT+N
Sbjct: 111 LTLQISGTIIAPNDPDVWE--------GLNR-----RKWLYFHG--LSRLTVEG-GGTVN 154
Query: 194 GQGQAWWKK-YRQKLLNNTRGPLVQIMW--SSDILISNITLRDSPFWTLHPYDCKNVTIR 250
G GQ WW++ + N RG + + ++ + N+ + DS + C+ VTI
Sbjct: 155 GMGQEWWERSCKHNHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTIS 214
Query: 251 NAFI---------SKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIA 292
+ I + S +VI++ +S GDD I+I Q I+
Sbjct: 215 GLKVIAPATSPNTDGIHISVS-RGIVIDNTTVSTGDDCISIVKNSTQISIS 264
>sp|A1D415|RGXC_NEOFI Putative galacturan 1,4-alpha-galacturonidase C OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=rgxC PE=3 SV=1
Length = 423
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 184 VITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWS-SDILISNITLRDSPFWTLHPY 242
+I+GHN TI+G G W+ +K + + P+ + W+ S++ + N ++D P W+L+
Sbjct: 115 IISGHNVTIDGNGNTWYTA--EKGVTQSGRPMPFVFWNVSEVNVENFYVKDPPLWSLNIM 172
Query: 243 DCKNVTIRNAFISKIQL 259
+ N+ N + + +
Sbjct: 173 NGTNMRFNNIYCNATSV 189
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2
Length = 433
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 55/262 (20%)
Query: 46 FIWQRNAVVGGFSFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRA-VYAIS 104
I +R + G SF+R + + P +++DFG GDG T +T+AF A A S
Sbjct: 44 LIKRREDITGLRSFVRASLRT-------PTTVSVSDFGAKGDGKTDDTQAFVNAWKKACS 96
Query: 105 KLGKKGGGQLNVPPGR-------WLTAPFN--LTSHMTLFLADDAEILAIENEKYWPLMP 155
G L VP G LT P N LT + L+ + ++ W +
Sbjct: 97 S---NGAVNLLVPKGNTYLLKSIQLTGPCNSILTVQIFGTLSASQKRSDYKDISKWIMFD 153
Query: 156 PLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKY--RQKLLNNTRG 213
+ NL V G G ++G G+ WW+ R K T+
Sbjct: 154 GV--------------------NNLS--VDGGDTGVVDGNGETWWQNSCKRNKAKPCTKA 191
Query: 214 PLVQIMWSS-DILISNITLRDSPFWTLHPYDCKNVTIRNAFISK---------IQLFDSC 263
P ++S +++ N+ +R++ + C NV + N ++ I + ++
Sbjct: 192 PTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNT- 250
Query: 264 EDMVIEDCYISVGDDAIAIKSG 285
+++ + + I GDD I+I+SG
Sbjct: 251 QNIRVSESIIGTGDDCISIESG 272
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1
Length = 467
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 37/223 (16%)
Query: 78 NLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT----SHMT 133
N+ DFG GDG +T+AF++A A L VP +L P + + S +T
Sbjct: 91 NVDDFGAKGDGRD-DTKAFEKAWKA--ACSSTSSAVLLVPKKNYLVRPISFSGPCKSGLT 147
Query: 134 LFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTIN 193
+ + Y + Y ++ G + F QNL+ + G GTIN
Sbjct: 148 MQI-------------YGTIEASDDRSDYRKD--GRHWLVFDSVQNLR---VEG-GGTIN 188
Query: 194 GQGQAWWKKYRQ--KLLNNTRGPLVQIMWSSD-ILISNITLRDSPFWTLHPYDCKNVTIR 250
G G+ WW+ + K L P + S +++ N+ + ++ + +C NV
Sbjct: 189 GNGKIWWQNSCKTNKALPCKDAPTALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQAS 248
Query: 251 NAFISKIQ--------LFDSCEDMVIEDCYISVGDDAIAIKSG 285
N ++ + +++ I C I GDD I+I +G
Sbjct: 249 NLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNG 291
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1
Length = 312
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 230 TLRDSPFWTLHPYDCKNVTIRNAFI------SKIQLF--DSCEDMVIEDCYISVGDDAIA 281
T+R++ WT+HP C+++T + I F +SC +++I SVGDD IA
Sbjct: 39 TIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIA 98
Query: 282 IKSG 285
+K+G
Sbjct: 99 VKAG 102
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2
Length = 439
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 49/248 (19%)
Query: 70 PRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGR-----WLTA 124
PR P +FN+ FG +G +++AF +A A G + P R +T
Sbjct: 64 PRSSPRSFNVNTFGAKANG-NDDSKAFMKAWEA--ACSSTGIVYIVAPKNRDYMLKAVTF 120
Query: 125 PFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVV 184
S + +F I A EN PS R H +I +N+ ++
Sbjct: 121 SGPCKSSLIIFKIY-GRIEAWEN----------PSDYKERRH-------WIVFENVNNLR 162
Query: 185 ITGHNGTINGQGQAWWKKYRQKLLNNTRGPL------VQIMWSSDILISNITLRDSPFWT 238
+ G G I+G G WW K + N + P V + +++ +SNI L ++
Sbjct: 163 VEG-GGRIDGNGHIWWPKSCKI---NPQLPCLGAPTAVTFVECNNLRVSNIRLENAQQMH 218
Query: 239 LHPYDCKNVTIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQY 289
L DCKNV N ++ I + + ++++I+D + GDD I+I SG +
Sbjct: 219 LTFQDCKNVKALNLMVTSPADSPNTDGIHVSGT-QNILIQDSIVRTGDDCISIVSGSENV 277
Query: 290 ---GIAYG 294
GI G
Sbjct: 278 RATGITCG 285
>sp|P18192|PGLR1_PECCC Endo-polygalacturonase OS=Pectobacterium carotovorum subsp.
carotovorum GN=peh PE=3 SV=1
Length = 402
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 23/183 (12%)
Query: 121 WLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNL 180
+L+ P +L S ++L + + A+ N K + P S G + +G +FI +
Sbjct: 78 FLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFENAPS--SCGV-VDTNGKGCDAFITATST 134
Query: 181 KDVVITGHNGTINGQGQ--------AWWK---KYRQKLLNNTRGPLVQIMWSSDILISNI 229
+ I G GTI+GQG +WW + K L L+QI S + + N+
Sbjct: 135 TNSGIYGP-GTIDGQGGVKLQDKKVSWWDLAADAKVKKLKQNTPRLIQINKSKNFTLYNV 193
Query: 230 TLRDSP-----FWTLHPYDCKNVTIRNAFISK-IQLFD--SCEDMVIEDCYISVGDDAIA 281
+L +SP F + TI+ ++ D S +++ I IS GDD +A
Sbjct: 194 SLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVA 253
Query: 282 IKS 284
IK+
Sbjct: 254 IKA 256
>sp|O31980|YOME_BACSU SPBc2 prophage-derived uncharacterized protein YomE OS=Bacillus
subtilis (strain 168) GN=yomE PE=4 SV=1
Length = 644
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 78 NLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTS 130
N+ D G DG+ NT F++A +S L +KGGG+L+ P G +L N TS
Sbjct: 343 NVLDLGFSPDGLIDNTAKFKKA---LSDLSEKGGGKLHFPKGTYLIGKQNTTS 392
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1
Length = 431
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 44/234 (18%)
Query: 72 LRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSH 131
L + ++++FG GDG T +T+AF++A W A T+
Sbjct: 63 LEASTVSVSNFGAKGDGKTDDTQAFKKA---------------------WKKACS--TNG 99
Query: 132 MTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQN----LKDV---- 183
+T FL + +++ ++ L ++ S +N L+DV
Sbjct: 100 VTTFLVPKGKTYLLKSTRFRGPCKSLRNFQILGTLSASTKRSDYKDKNHWLILEDVNNLS 159
Query: 184 VITGHNGTINGQGQAWWKKYRQ--KLLNNTRGPLVQIMWS-SDILISNITLRDSPFWTLH 240
+ G G ING G+ WW+ + K T+ P +++ ++ + N+ ++++ +
Sbjct: 160 IDGGSTGIINGNGKTWWQNSCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQIS 219
Query: 241 PYDCKNVTIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSG 285
C V + N I+ I + ++ +++ + + I GDD I+I+ G
Sbjct: 220 IEKCNKVEVSNVEITAPGDSPNTDGIHITNT-QNIRVSNSDIGTGDDCISIEDG 272
>sp|P26509|PGLR2_PECSS Endo-polygalacturonase OS=Pectobacterium sp. (strain SCC3193)
GN=pehA PE=1 SV=1
Length = 402
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 121 WLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNL 180
+L+ P +L S ++L + + A+ N K + P S G + +G +FI +
Sbjct: 78 FLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFENAPS--SCGV-VDKNGKGCDAFITAVST 134
Query: 181 KDVVITGHNGTINGQGQ--------AWWK---KYRQKLLNNTRGPLVQIMWSSDILISNI 229
+ I G GTI+GQG +WW+ + K L L+QI S + + N+
Sbjct: 135 TNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNV 193
Query: 230 TLRDSP-----FWTLHPYDCKNVTIRNAFISK-IQLFD--SCEDMVIEDCYISVGDDAIA 281
+L +SP F + TI+ ++ D S +++ I I+ GDD +A
Sbjct: 194 SLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVA 253
Query: 282 IKS 284
IK+
Sbjct: 254 IKA 256
>sp|P47180|PGLR_YEAST Polygalacturonase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PGU1 PE=1 SV=1
Length = 361
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 164 REHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSD 223
+E GP I G + V +GH TI+GQG WW + V++ +
Sbjct: 81 KEWSGPLIS--ISGSKISVVGASGH--TIDGQGAKWWDGLGDS--GKVKPKFVKLALTGT 134
Query: 224 ILISNITLRDSPFWTLHPYDCKNVTIRNAFIS----------KIQLFD--SCEDMVIEDC 271
++ + ++++P C ++TI + I FD S +++I+ C
Sbjct: 135 SKVTGLNIKNAPHQVFSINKCSDLTISDITIDIRDGDSAGGHNTDGFDVGSSSNVLIQGC 194
Query: 272 YISVGDDAIAIKSG 285
+ DD IA+ SG
Sbjct: 195 TVYNQDDCIAVNSG 208
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1
Length = 460
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 44/246 (17%)
Query: 57 FSFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNV 116
+ + G+A+ P ++ DFG G+G +T+AF +A A G L V
Sbjct: 82 LNTITGGIATSSAP---AKTISVDDFGAKGNGAD-DTQAFVKAWKA--ACSSSGAMVLVV 135
Query: 117 PPGRWLTAPFNLT----SHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFG 172
P +L P + S +TL + I A E+ + + +H
Sbjct: 136 PQKNYLVRPIEFSGPCKSQLTLQIY--GTIEASEDRSIYKDI----------DH------ 177
Query: 173 SFIHGQNLKDVVITGHNGTINGQGQAWWK---KYRQKLLNNTRGPL-VQIMWSSDILISN 228
++ N++++++ G GTING G WWK K + + T P V +++++ N
Sbjct: 178 -WLIFDNVQNLLVVGP-GTINGNGNIWWKNSCKIKPQPPCGTYAPTAVTFNRCNNLVVKN 235
Query: 229 ITLRDSPFWTLHPYDCKNVTIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDA 279
+ ++D+ + +C NV ++ I + ++ +++ I I GDD
Sbjct: 236 LNIQDAQQIHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNT-QNITISSSVIGTGDDC 294
Query: 280 IAIKSG 285
I+I SG
Sbjct: 295 ISIVSG 300
>sp|Q873X6|PGXB_EMENI Probable exopolygalacturonase B OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pgxB
PE=2 SV=1
Length = 440
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 30/142 (21%)
Query: 182 DVVITGHNGTINGQGQAWWKKYR-QKLL---NNTRGPLVQIMWSSDIL-ISNITLRDSPF 236
DV I G GT+NG GQ W+ ++ Q++L N P++ + ++ L + IT +SP
Sbjct: 148 DVRIFGR-GTLNGNGQRWYNEFAGQEILDPDNTYYRPILFVAENATRLSVEGITELNSPC 206
Query: 237 WTLHPYDCKNVTIRNAFISKIQLFDSCE-------------DMVIEDCYISVGDDAIAIK 283
WT + K+++ N FI+ S E + + + + +GDD + K
Sbjct: 207 WTNFLVNSKDISFDNVFINAYSTNASAEPKNTDGFDSLNVNGLSVTNTRVDIGDDCFSPK 266
Query: 284 SGWDQYGIAYGRPSMNILIRNL 305
+ NI ++NL
Sbjct: 267 PN-----------TTNIFVQNL 277
>sp|Q4WBK6|PGXB_ASPFU Probable exopolygalacturonase B OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pgxB
PE=3 SV=2
Length = 453
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 30/143 (20%)
Query: 181 KDVVITGHNGTINGQGQAWWKKYR-QKLLNNTRGPLVQIMWSSD----ILISNITLRDSP 235
+D+ I G +G +NG GQ W+ ++ Q++L+ I++ ++ + + IT +SP
Sbjct: 142 EDIKIFG-SGVLNGNGQRWYNEFAGQEILDPNNKYYRPILFVTENATRVSVEGITQLNSP 200
Query: 236 FWTLHPYDCKNVTIRNAFISKIQL-----------FDS--CEDMVIEDCYISVGDDAIAI 282
WT K+++ N FI FD+ + + + + + +GDD ++
Sbjct: 201 CWTNFFVRTKDISFDNVFIHAYSTNASALPKNTDGFDTLNVDGLTVTNTRVDIGDDCLSP 260
Query: 283 KSGWDQYGIAYGRPSMNILIRNL 305
K + N+ ++NL
Sbjct: 261 KPN-----------TTNVFVKNL 272
>sp|B0YAA4|PGXB_ASPFC Probable exopolygalacturonase B OS=Neosartorya fumigata (strain
CEA10 / CBS 144.89 / FGSC A1163) GN=pgxB PE=3 SV=2
Length = 453
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 30/143 (20%)
Query: 181 KDVVITGHNGTINGQGQAWWKKYR-QKLLNNTRGPLVQIMWSSD----ILISNITLRDSP 235
+D+ I G +G +NG GQ W+ ++ Q++L+ I++ ++ + + IT +SP
Sbjct: 142 EDIKIFG-SGVLNGNGQRWYNEFAGQEILDPNNKYYRPILFVTENATRVSVEGITQLNSP 200
Query: 236 FWTLHPYDCKNVTIRNAFISKIQL-----------FDS--CEDMVIEDCYISVGDDAIAI 282
WT K+++ N FI FD+ + + + + + +GDD ++
Sbjct: 201 CWTNFFVRTKDISFDNVFIHAYSTNASALPKNTDGFDTLNVDGLTVTNTRVDIGDDCLSP 260
Query: 283 KSGWDQYGIAYGRPSMNILIRNL 305
K + N+ ++NL
Sbjct: 261 KPN-----------TTNVFVKNL 272
>sp|A1DAX2|PGXB_NEOFI Probable exopolygalacturonase B OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pgxB
PE=3 SV=1
Length = 453
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 19/121 (15%)
Query: 181 KDVVITGHNGTINGQGQAWWKKYR-QKLLNNTRGPLVQIMWSSD----ILISNITLRDSP 235
+D+ I G +G +NG GQ W+ ++ Q++L+ I++ ++ + + IT +SP
Sbjct: 142 EDIKIFG-SGVLNGNGQRWYNEFAGQEILDPNNKYYRPILFVTENATRVSVEGITQLNSP 200
Query: 236 FWTLHPYDCKNVTIRNAFI-----------SKIQLFDS--CEDMVIEDCYISVGDDAIAI 282
WT K+++ N FI FD+ + + + + + +GDD ++
Sbjct: 201 CWTNFFVRTKDISFNNVFIHAYSTNASALPKNTDGFDTLNVDGLTVTNTRVDIGDDCLSP 260
Query: 283 K 283
K
Sbjct: 261 K 261
>sp|B8NX60|PGXB_ASPFN Probable exopolygalacturonase B OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=pgxB PE=3 SV=1
Length = 435
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 30/147 (20%)
Query: 181 KDVVITGHNGTINGQGQAWWKKYR-QKLLNNTRGPLVQIMW----SSDILISNITLRDSP 235
KD+ I G G +NG GQ W+ ++ Q++L+ I++ ++ I + IT +SP
Sbjct: 141 KDIKIFG-TGLLNGNGQRWYNEFAGQEILDPDNEYYRPILFLTENATRISVEGITQLNSP 199
Query: 236 FWTLHPYDCKNVTIRNAFISKIQL-----------FDS--CEDMVIEDCYISVGDDAIAI 282
WT K+V+ + +I FDS + + + + + VGDD +
Sbjct: 200 CWTNFFIQSKDVSFDDVYIHAFSTNKSALPKNSDGFDSLNVDGLTVTNTRVDVGDDCFSP 259
Query: 283 KSGWDQYGIAYGRPSMNILIRNLVVRS 309
K + NI ++NL+ +
Sbjct: 260 KPN-----------TTNIFVQNLLCNN 275
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1
Length = 407
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Query: 190 GTINGQGQAWWKK-------YRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPY 242
G +GQG ++K +R KL N R V ++ LI +IT +DS + ++ +
Sbjct: 124 GIFDGQGSIAYEKNTCENREFRSKLPVNIRFDFV-----TNALIQDITSKDSKLFHINVF 178
Query: 243 DCKNVTIRNAFISKIQLFDS-----------CEDMVIEDCYISVGDDAIAIKSG 285
CKN+T+ KI+ D E + I I GDD I+I G
Sbjct: 179 ACKNITLERL---KIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDG 229
>sp|Q2TW03|PGXB_ASPOR Probable exopolygalacturonase B OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=pgxB PE=3 SV=2
Length = 435
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 30/147 (20%)
Query: 181 KDVVITGHNGTINGQGQAWWKKYR-QKLLNNTRGPLVQIMW----SSDILISNITLRDSP 235
KD+ I G G +NG GQ W+ ++ Q++L+ I++ ++ I + IT +SP
Sbjct: 141 KDIKIFG-TGLLNGNGQRWYNEFAGQEILDPDNEYYRPILFLTENATRISVEGITQLNSP 199
Query: 236 FWTLHPYDCKNVTIRNAFISKIQL-----------FDS--CEDMVIEDCYISVGDDAIAI 282
WT K+V+ + +I FDS + + + + + VGDD +
Sbjct: 200 CWTNFFIQSKDVSFDDVYIHAFSTNKSALPKNSDGFDSLNVDGLTVTNTRVDVGDDCFSP 259
Query: 283 KSGWDQYGIAYGRPSMNILIRNLVVRS 309
K + NI ++NL+ +
Sbjct: 260 KPN-----------TTNIFVQNLLCNN 275
>sp|A2RAY7|RGXC_ASPNC Putative galacturan 1,4-alpha-galacturonidase C OS=Aspergillus
niger (strain CBS 513.88 / FGSC A1513) GN=rgxC PE=2 SV=1
Length = 423
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 37/163 (22%)
Query: 164 REHHGPRFGSFIHGQNLKDVVITGH-NGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWS- 221
+ HH G I G N + I G+ G I+G G W+ +K P+ + W+
Sbjct: 106 QNHHA---GFIISGDN---ITINGYGTGGIDGNGNTWYTA--EKGDTQPGRPMPFVFWNV 157
Query: 222 SDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL--------------FDSCEDMV 267
S++++ + ++D P W+++ + N+ N + + + FD+ +
Sbjct: 158 SEVIVDSFYVKDPPLWSVNIMNGTNMRFNNIYCNATAVDAPWGDNWVQNTDGFDTMDATN 217
Query: 268 IE--DCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVR 308
I+ + GDD IAIK S NI I+N+ R
Sbjct: 218 IQLTNFVYQGGDDCIAIKP-----------RSYNIDIQNVTCR 249
>sp|Q8CYC9|PFBA_STRR6 Plasmin and fibronectin-binding protein A OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=pfbA PE=1 SV=1
Length = 719
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 19/201 (9%)
Query: 58 SFLRWGVASRPIPR-LRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNV 116
S+ ++ R I + A ++ D+G VGDG+ + + + GGG +
Sbjct: 132 SYKEDVISDRIIKKEFEDTALSVKDYGAVGDGI--HDDRQAIQDAIDAAAQGLGGGNVYF 189
Query: 117 PPGRWLTAPFN-LTSHMTLFLADDAEILAIENEKYWP---LMPPLPSYGYGREHHGPRFG 172
P G +L L SH L L + A IL N K P M L + + GP
Sbjct: 190 PEGTYLVKEIVFLKSHTHLELNEKATILNGINIKNHPSIVFMTGLFTDDGAQVEWGP--- 246
Query: 173 SFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLR 232
+D+ +G +NG K + L N+ G I S+++ I N+T +
Sbjct: 247 -------TEDISYSGGTIDMNGALNEEGTKAKNLPLINSSGAFA-IGNSNNVTIKNVTFK 298
Query: 233 DS-PFWTLHPYDCKNVTIRNA 252
DS + KNV + N+
Sbjct: 299 DSYQGHAIQIAGSKNVLVDNS 319
>sp|Q9XJP3|TSPE_BPSFV Bifunctional tail protein OS=Enterobacteria phage Sf6 PE=1 SV=2
Length = 623
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 76 AFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVP 117
A ++ DFG + DGVT N +A Q A+ A++ L GG+L +P
Sbjct: 160 AISILDFGVIDDGVTDNYQAIQNAIDAVASL--PSGGELFIP 199
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1
Length = 407
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Query: 190 GTINGQGQAWWKK-------YRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPY 242
G +GQG ++K +R KL N R + ++ LI +IT +DS + ++ +
Sbjct: 124 GIFDGQGSIAYEKNTCENREFRSKLPVNIR-----FDFLTNALIQDITSKDSKLFHINVF 178
Query: 243 DCKNVTIRNAFISKIQLFDS-----------CEDMVIEDCYISVGDDAIAIKSG 285
CKN+T+ KI+ D E + I I GDD I+I G
Sbjct: 179 ACKNITLERL---KIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDG 229
>sp|B5ZV40|SYL_RHILW Leucine--tRNA ligase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=leuS PE=3 SV=1
Length = 876
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 247 VTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYG 290
+RNA IQL + E+C++++G++ + ++GW QYG
Sbjct: 765 AAVRNAAEILIQLVAPMTPHLAEECWMALGNEGLLARTGWPQYG 808
>sp|Q9F5I8|CGIA_ALTFO Iota-carrageenase OS=Alteromonas fortis GN=cgiA PE=1 SV=1
Length = 491
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 34 FTVLWLAAFASVFIWQRNAVVGGFSFLRWGVASRPI-PRLRPAAFNLTD-FGGVGDGVTL 91
F LWL +A +G S + A + P + ++L D FG G+ +
Sbjct: 5 FRKLWLTNLFLGGALASSAAIGAVSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSD 64
Query: 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEI 142
++ A QRA+ AIS+ K GG L +P G + + S++ + + D I
Sbjct: 65 DSNALQRAINAISR--KPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVII 113
>sp|Q01832|C4_GIAIN Protein C4 OS=Giardia intestinalis GN=C4 PE=4 SV=1
Length = 198
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 139 DAEILAIENEKYWPLMPPLPSYGYGREHH-----------GPRFGSFIHGQNLKDVVITG 187
DA E+ K+W P P +G + H GP+ F+ +++KD+ +T
Sbjct: 51 DAHCCDREHRKFWKHPPEFPHFGKCKGRHALPFPRMEHWPGPKHCPFLSEKDMKDLPVTV 110
Query: 188 HNGTI 192
H+G +
Sbjct: 111 HHGCM 115
>sp|Q0C7H7|PGXB_ASPTN Probable exopolygalacturonase B OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=pgxB PE=3 SV=1
Length = 435
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 19/121 (15%)
Query: 181 KDVVITGHNGTINGQGQAWWKKYR-QKLL--NNT--RGPLVQIMWSSDILISNITLRDSP 235
+D+ I G +G +NG GQ W+ ++ Q++L +NT R L ++ + + IT +SP
Sbjct: 141 QDIKIFG-SGVLNGNGQRWYNEFAGQEILDPDNTFYRPILFVTENATRVSVEGITQLNSP 199
Query: 236 FWTLHPYDCKNVTIRNAFISKIQL-----------FDS--CEDMVIEDCYISVGDDAIAI 282
WT +V+ N +I FDS + + + + ++VGDD +
Sbjct: 200 CWTNFFVGSNDVSFDNVYIEAFSTNASALPKNTDGFDSYNVKGLSVTNTRVNVGDDCFSP 259
Query: 283 K 283
K
Sbjct: 260 K 260
>sp|Q27UB3|PGLRX_ASPNG Exopolygalacturonase X OS=Aspergillus niger GN=pgaX PE=3 SV=1
Length = 435
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 25/137 (18%)
Query: 181 KDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLH 240
+DV + G GTING GQ W+ Y + L R L+ I+ + I + LR SP +
Sbjct: 138 EDVNMYG-GGTINGNGQVWYDLYAEDDL-ILRPILMGIIGLNGGTIGPLKLRYSPQYYHF 195
Query: 241 PYDCKNVTIRNAFISKIQLFDS------------CEDMVIEDCYISVGDDAIAIKSGWDQ 288
+ NV IS D+ ++VI++ I+ GDD ++ K
Sbjct: 196 VANSSNVLFDGIDISGYSKSDNEAKNTDGWDTYRSNNIVIQNSVINNGDDCVSFKPN--- 252
Query: 289 YGIAYGRPSMNILIRNL 305
S NIL++NL
Sbjct: 253 --------STNILVQNL 261
>sp|A2R060|PGLRX_ASPNC Probable exopolygalacturonase X OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=pgaX PE=3 SV=1
Length = 435
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 25/137 (18%)
Query: 181 KDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLH 240
+DV + G GTING GQ W+ Y + L R L+ I+ + I + LR SP +
Sbjct: 138 EDVNMYG-GGTINGNGQVWYDLYAEDDL-ILRPILMGIIGLNGGTIGPLKLRYSPQYYHF 195
Query: 241 PYDCKNVTIRNAFISKIQLFDS------------CEDMVIEDCYISVGDDAIAIKSGWDQ 288
+ NV IS D+ ++VI++ I+ GDD ++ K
Sbjct: 196 VANSSNVLFDGIDISGYSKSDNEAKNTDGWDTYRSNNIVIQNSVINNGDDCVSFKPN--- 252
Query: 289 YGIAYGRPSMNILIRNL 305
S NIL++NL
Sbjct: 253 --------STNILVQNL 261
>sp|Q00293|PGLRX_ASPTU Exopolygalacturonase X OS=Aspergillus tubingensis GN=pgaX PE=1 SV=1
Length = 435
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 190 GTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTI 249
GTING GQ W+ Y + L R L+ I+ + I + LR SP + + NV
Sbjct: 146 GTINGNGQVWYDLYAEDDL-ILRPILMGIIGLNGGTIGPLKLRYSPQYYHFVANSSNVLF 204
Query: 250 RNAFISKIQLFDS------------CEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPS 297
IS D+ ++VI++ I+ GDD ++ K S
Sbjct: 205 DGIDISGYSKSDNEAKNTDGWDTYRSNNIVIQNSVINNGDDCVSFKPN-----------S 253
Query: 298 MNILIRNL 305
NIL++NL
Sbjct: 254 TNILVQNL 261
>sp|Q27UB1|PGXB_ASPNG Exopolygalacturonase B OS=Aspergillus niger GN=pgxB PE=3 SV=1
Length = 438
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 181 KDVVITGHNGTINGQGQAWWKKY--RQKLLNNT--RGPLVQIMWSSDILISNITLRDSPF 236
+D+ I G +G +NG GQ W+ ++ +Q L+ NT R L ++ I + IT +SP
Sbjct: 143 QDIKIFG-SGVLNGNGQKWYDEFAGKQILVYNTFYRPILFLTDNATRISVEGITQLNSPC 201
Query: 237 WTLHPYDCKNVTIRNAFI 254
WT +V+ N +I
Sbjct: 202 WTNFFVRTNDVSFDNVYI 219
>sp|A2QHG0|PGXB_ASPNC Probable exopolygalacturonase B OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=pgxB PE=3 SV=1
Length = 438
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 181 KDVVITGHNGTINGQGQAWWKKY--RQKLLNNT--RGPLVQIMWSSDILISNITLRDSPF 236
+D+ I G +G +NG GQ W+ ++ +Q L+ NT R L ++ I + IT +SP
Sbjct: 143 QDIKIFG-SGVLNGNGQKWYDEFAGKQILVYNTFYRPILFLTDNATRISVEGITQLNSPC 201
Query: 237 WTLHPYDCKNVTIRNAFI 254
WT +V+ N +I
Sbjct: 202 WTNFFVRTNDVSFDNVYI 219
>sp|P26215|PGLR_COCCA Polygalacturonase OS=Cochliobolus carbonum GN=PGN1 PE=3 SV=1
Length = 364
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 159 SYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQI 218
++GY +E GP + G N+K V +GH TI+ GQ WW + T+
Sbjct: 79 TFGY-KEWEGPLI--SVSGTNIKVVGASGH--TIDAAGQKWWDG-KGSNGGKTKPKFFYA 132
Query: 219 MWSSDILISNITLRDSPFW----------TLHPYDCKNVTIRNAFISKIQLFD--SCEDM 266
+ IS + ++++P TL N +A FD S +
Sbjct: 133 HSLTTSSISGLNIKNTPVQAFSINGVTGLTLDRITIDNSAGDSAGAHNTDAFDIGSSSGI 192
Query: 267 VIEDCYISVGDDAIAIKSGWD 287
I + I DD +AI SG D
Sbjct: 193 TISNANIKNQDDCVAINSGSD 213
>sp|P49426|EXG1_COCCA Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum GN=EXG1 PE=1
SV=1
Length = 788
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 78 NLTDFGGVGDGVTLNTEAFQRAVYAISKLG 107
N+ D+G GDGVT +++AF RA+ S+ G
Sbjct: 72 NVKDYGAKGDGVTDDSDAFNRAISDGSRCG 101
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2
PE=1 SV=1
Length = 377
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 190 GTINGQGQAWWKKYRQKLLNNTRGPLVQIMWS--SDILISNITLRDSPFWTLHPYDCKNV 247
GT++GQGQ W K N + + + + ++ +IT +S + ++ +C+++
Sbjct: 103 GTLDGQGQTAWAKNNCDKNPNCKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDI 162
Query: 248 TIRNAFISK---------IQLFDSCEDMVIEDCYISVGDDAIAIKSG 285
T ++ ++ I + S + + I + I+ GDD I+I G
Sbjct: 163 TFQHVTVTAPGTSINTDGIHVGIS-KGVTITNTKIATGDDCISIGPG 208
>sp|Q2EQQ2|RGXA_ASPNG Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus
niger GN=rgxA PE=2 SV=1
Length = 438
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 109/296 (36%), Gaps = 66/296 (22%)
Query: 59 FLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPP 118
F +A+ +P LR T +G+G + + A+ + G+ GG++ +P
Sbjct: 12 FAGLSLAASAVPSLRKNGTTCTVIP-LGNG----QDDVPNILSAVDECGQTSGGRVVLP- 65
Query: 119 GRWLTAPFN--LTSHMTLFLADD-----AEILAIENEKYWPLMPPLPSYGYGREHHGPRF 171
AP+ + MT L D +L ++ YW + Y +
Sbjct: 66 -----APYTYRINQRMTTHLTDSRLEIGGTLLFSDDIDYWV------NNSYRVDFQNQSS 114
Query: 172 GSFIHGQNLKDVVITG--HNGTINGQGQAW--WKKYRQKLLNNTRGPLVQIMWSSDILIS 227
I G D V+ G H G ++G GQ W W K + R V + S+ +
Sbjct: 115 AWRITGH---DYVVDGGPHRGGVDGNGQLWYTWAKGGSNVFG--RPMPVHVFESTRATLR 169
Query: 228 NITLRDSPFWTLHPYDCKNVTIRNAFISK-------------IQLFDS-----CEDMVIE 269
N+ +R FW + ++ + N +++ +Q D + + I
Sbjct: 170 NLAIRQPQFWAVLVDSSSHINLDNFYVNATNHDSSVSPEGEWVQNTDGIDTYRSDHITIT 229
Query: 270 DCYISVGDDAIAIKSG-----------WDQYGIAYGR----PSMNILIRNLVVRSM 310
+ GDDA+A K + GIA+G P ++ N+ VR++
Sbjct: 230 NWVYQGGDDAVAFKGNSTNIHVENVTVYGGPGIAFGSLGQYPDRTDIVENVTVRNV 285
>sp|Q2U293|RHGA_ASPOR Probable rhamnogalacturonase A OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=rhgA PE=3 SV=1
Length = 467
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 28/125 (22%)
Query: 190 GTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTI 249
G I G G ++ ++ LN R L++ +D + ++ L DSP + L CKN I
Sbjct: 129 GAIQGLG---YEFHKDGSLNGPR--LLRFYDVTDFSVHDVALVDSPAFHLSLDTCKNAEI 183
Query: 250 RNAFISKIQLFDS---------CEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNI 300
N I+ DS E++ + D ++ D+ + +KS P+ NI
Sbjct: 184 YNM---AIRGGDSGGLDGVDIWSENVWVHDVEVTNKDECVTVKS-----------PAKNI 229
Query: 301 LIRNL 305
L+ N+
Sbjct: 230 LVENI 234
>sp|B8NK45|RHGA_ASPFN Probable rhamnogalacturonase A OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=rhgA PE=3 SV=1
Length = 467
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 28/125 (22%)
Query: 190 GTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTI 249
G I G G ++ ++ LN R L++ +D + ++ L DSP + L CKN I
Sbjct: 129 GAIQGLG---YEFHKDGSLNGPR--LLRFYDVTDFSVHDVALVDSPAFHLSLDTCKNAEI 183
Query: 250 RNAFISKIQLFDS---------CEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNI 300
N I+ DS E++ + D ++ D+ + +KS P+ NI
Sbjct: 184 YNM---AIRGGDSGGLDGVDIWSENVWVHDVEVTNKDECVTVKS-----------PAKNI 229
Query: 301 LIRNL 305
L+ N+
Sbjct: 230 LVENI 234
>sp|C4L8J2|DDL_TOLAT D-alanine--D-alanine ligase OS=Tolumonas auensis (strain DSM 9187 /
TA4) GN=ddl PE=3 SV=1
Length = 330
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 130 SHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHG 177
S + FL +D EIL E + P M P+ + EHHG F F+ G
Sbjct: 277 SRIDFFLTEDNEILLNEINTF-PGMTPISMFPKLLEHHGDNFKQFLEG 323
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,368,670
Number of Sequences: 539616
Number of extensions: 5321541
Number of successful extensions: 12912
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 12853
Number of HSP's gapped (non-prelim): 88
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)