Query 021449
Match_columns 312
No_of_seqs 238 out of 1498
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 1.3E-46 2.8E-51 366.2 24.6 218 73-310 49-301 (443)
2 PLN02218 polygalacturonase ADP 100.0 2.5E-46 5.5E-51 362.7 23.4 217 72-310 63-316 (431)
3 PLN02155 polygalacturonase 100.0 9.8E-45 2.1E-49 348.1 20.6 215 72-310 23-269 (394)
4 PLN02188 polygalacturonase/gly 100.0 3.1E-44 6.7E-49 345.9 20.4 212 73-310 33-279 (404)
5 PLN03010 polygalacturonase 100.0 7.6E-43 1.6E-47 335.9 22.3 205 73-310 43-281 (409)
6 PLN03003 Probable polygalactur 100.0 1.8E-42 3.9E-47 335.6 21.4 212 73-310 20-262 (456)
7 COG5434 PGU1 Endopygalactoruna 100.0 6.5E-38 1.4E-42 307.8 19.5 234 69-309 75-341 (542)
8 PF00295 Glyco_hydro_28: Glyco 100.0 1.5E-31 3.3E-36 252.8 11.3 184 106-310 1-216 (326)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 2.3E-25 5.1E-30 213.2 16.4 176 69-284 30-210 (455)
10 PF12708 Pectate_lyase_3: Pect 99.8 8.8E-20 1.9E-24 161.9 18.1 192 76-311 1-221 (225)
11 PF03718 Glyco_hydro_49: Glyco 99.4 3.8E-12 8.2E-17 124.0 15.0 159 110-310 231-413 (582)
12 TIGR03805 beta_helix_1 paralle 99.3 4E-11 8.7E-16 113.0 16.5 170 96-310 1-203 (314)
13 PF00295 Glyco_hydro_28: Glyco 98.9 2.2E-08 4.7E-13 95.0 13.5 116 172-310 92-245 (326)
14 PLN02793 Probable polygalactur 98.9 1.5E-08 3.3E-13 99.5 12.3 114 173-309 178-329 (443)
15 PLN02218 polygalacturonase ADP 98.8 6.6E-08 1.4E-12 94.7 12.2 118 173-309 193-344 (431)
16 TIGR03805 beta_helix_1 paralle 98.7 8E-08 1.7E-12 90.7 11.1 104 181-309 32-150 (314)
17 PLN03003 Probable polygalactur 98.7 1.3E-07 2.8E-12 92.9 12.1 119 173-310 139-291 (456)
18 PLN02188 polygalacturonase/gly 98.7 2.6E-07 5.6E-12 89.9 13.3 116 173-309 156-309 (404)
19 PLN03010 polygalacturonase 98.7 2.6E-07 5.7E-12 89.8 13.0 114 174-310 159-310 (409)
20 PLN02155 polygalacturonase 98.6 3.9E-07 8.4E-12 88.4 12.4 119 173-310 146-299 (394)
21 COG5434 PGU1 Endopygalactoruna 98.6 3.3E-07 7.1E-12 91.4 10.8 113 172-309 238-368 (542)
22 PF07602 DUF1565: Protein of u 98.3 3.7E-05 7.9E-10 69.9 15.6 39 93-136 15-58 (246)
23 PF12541 DUF3737: Protein of u 98.1 5.2E-06 1.1E-10 75.1 6.6 53 218-274 133-185 (277)
24 PF13229 Beta_helix: Right han 98.0 6.1E-05 1.3E-09 62.3 9.8 87 214-311 46-138 (158)
25 PF12541 DUF3737: Protein of u 97.9 2.2E-05 4.7E-10 71.1 6.8 86 219-309 115-205 (277)
26 COG3866 PelB Pectate lyase [Ca 97.9 0.00021 4.5E-09 66.0 11.7 116 175-312 95-231 (345)
27 smart00656 Amb_all Amb_all dom 97.8 0.00036 7.8E-09 61.2 11.5 91 215-309 33-143 (190)
28 PF00544 Pec_lyase_C: Pectate 97.7 0.00024 5.2E-09 62.9 9.2 92 216-311 39-159 (200)
29 PLN02480 Probable pectinestera 97.6 0.0015 3.1E-08 62.4 13.9 178 91-309 58-251 (343)
30 PF05048 NosD: Periplasmic cop 97.6 0.002 4.4E-08 57.9 14.3 66 215-281 81-150 (236)
31 PF13229 Beta_helix: Right han 97.6 0.00024 5.3E-09 58.6 7.2 85 215-311 25-113 (158)
32 TIGR03808 RR_plus_rpt_1 twin-a 97.5 0.0013 2.9E-08 64.2 11.9 107 172-309 135-282 (455)
33 PF05048 NosD: Periplasmic cop 97.4 0.002 4.3E-08 57.9 11.0 93 216-310 38-144 (236)
34 PF14592 Chondroitinas_B: Chon 97.3 0.0044 9.6E-08 60.4 13.1 32 92-128 3-34 (425)
35 PLN02304 probable pectinestera 97.2 0.01 2.2E-07 57.2 13.9 185 92-309 86-286 (379)
36 PLN02713 Probable pectinestera 97.0 0.021 4.6E-07 58.0 15.0 84 219-310 365-455 (566)
37 PLN02682 pectinesterase family 97.0 0.023 5E-07 54.7 14.3 190 92-309 81-279 (369)
38 PLN02170 probable pectinestera 97.0 0.031 6.8E-07 56.2 15.6 178 92-309 236-426 (529)
39 PLN02773 pectinesterase 97.0 0.031 6.6E-07 52.9 14.8 83 220-309 128-211 (317)
40 PLN02506 putative pectinestera 96.9 0.029 6.4E-07 56.7 15.3 83 219-309 344-433 (537)
41 PLN02497 probable pectinestera 96.9 0.053 1.2E-06 51.5 15.8 83 219-309 147-238 (331)
42 PLN02416 probable pectinestera 96.9 0.035 7.6E-07 56.2 15.3 175 92-309 241-431 (541)
43 smart00656 Amb_all Amb_all dom 96.9 0.004 8.6E-08 54.7 7.6 62 237-309 32-113 (190)
44 PLN02432 putative pectinestera 96.8 0.039 8.4E-07 51.6 14.2 83 219-309 118-204 (293)
45 PLN02201 probable pectinestera 96.8 0.04 8.7E-07 55.4 15.2 175 92-309 217-407 (520)
46 PLN02671 pectinesterase 96.8 0.038 8.3E-07 53.0 14.3 185 92-309 70-269 (359)
47 PLN02933 Probable pectinestera 96.8 0.054 1.2E-06 54.6 16.0 83 219-309 330-419 (530)
48 PF01095 Pectinesterase: Pecti 96.8 0.0063 1.4E-07 57.1 8.9 84 219-310 112-202 (298)
49 PRK10531 acyl-CoA thioesterase 96.8 0.032 7E-07 54.5 13.9 49 86-136 88-139 (422)
50 PF12218 End_N_terminal: N ter 96.8 0.0012 2.5E-08 46.6 2.8 38 84-127 1-39 (67)
51 PLN02708 Probable pectinestera 96.8 0.049 1.1E-06 55.3 15.5 177 92-309 252-448 (553)
52 PLN02665 pectinesterase family 96.8 0.042 9.1E-07 52.9 14.3 83 219-309 184-271 (366)
53 PLN03043 Probable pectinestera 96.8 0.046 1E-06 55.3 15.2 83 220-310 339-428 (538)
54 PLN02484 probable pectinestera 96.8 0.046 9.9E-07 55.9 15.2 176 92-309 283-474 (587)
55 COG3420 NosD Nitrous oxidase a 96.7 0.0098 2.1E-07 56.0 9.2 138 109-285 32-180 (408)
56 PLN02916 pectinesterase family 96.7 0.047 1E-06 54.6 14.5 83 220-310 303-392 (502)
57 PLN02634 probable pectinestera 96.7 0.072 1.6E-06 51.1 14.8 186 92-309 67-265 (359)
58 PLN02301 pectinesterase/pectin 96.6 0.059 1.3E-06 54.6 14.9 84 219-310 348-438 (548)
59 PLN02176 putative pectinestera 96.6 0.2 4.3E-06 47.9 17.7 179 92-309 50-245 (340)
60 PLN02217 probable pectinestera 96.6 0.051 1.1E-06 56.2 14.6 84 219-310 362-452 (670)
61 PF00544 Pec_lyase_C: Pectate 96.6 0.013 2.9E-07 51.7 9.2 63 237-310 37-128 (200)
62 PLN02488 probable pectinestera 96.6 0.071 1.5E-06 53.3 15.0 179 91-310 207-399 (509)
63 PLN02745 Putative pectinestera 96.6 0.082 1.8E-06 54.1 15.6 84 219-310 397-487 (596)
64 PLN02313 Pectinesterase/pectin 96.5 0.083 1.8E-06 54.1 15.2 83 219-309 387-476 (587)
65 COG3866 PelB Pectate lyase [Ca 96.5 0.018 4E-07 53.4 9.0 93 215-310 94-198 (345)
66 PLN02468 putative pectinestera 96.4 0.11 2.4E-06 52.9 15.5 84 219-310 370-460 (565)
67 PLN02990 Probable pectinestera 96.4 0.086 1.9E-06 53.8 14.6 84 219-310 372-462 (572)
68 PLN02314 pectinesterase 96.4 0.1 2.3E-06 53.4 15.2 84 219-310 390-480 (586)
69 PLN02995 Probable pectinestera 96.4 0.1 2.2E-06 52.9 14.8 176 92-309 234-426 (539)
70 PLN02197 pectinesterase 96.4 0.12 2.6E-06 52.8 15.2 85 219-310 389-480 (588)
71 PF01696 Adeno_E1B_55K: Adenov 96.3 0.31 6.7E-06 47.1 16.7 148 78-274 45-198 (386)
72 PRK10123 wcaM putative colanic 95.8 0.54 1.2E-05 43.7 15.2 52 73-137 31-85 (464)
73 PF03718 Glyco_hydro_49: Glyco 94.4 2.1 4.6E-05 43.1 15.6 169 110-309 255-440 (582)
74 PF01696 Adeno_E1B_55K: Adenov 92.1 2.5 5.4E-05 41.0 11.9 80 219-310 118-200 (386)
75 COG4677 PemB Pectin methyleste 91.9 3.6 7.9E-05 38.9 12.3 46 91-137 92-140 (405)
76 PF12708 Pectate_lyase_3: Pect 90.0 2.1 4.5E-05 37.3 8.8 73 224-309 94-196 (225)
77 TIGR03804 para_beta_helix para 87.8 1.2 2.6E-05 28.9 4.3 41 216-257 2-42 (44)
78 PF08480 Disaggr_assoc: Disagg 86.0 6.5 0.00014 34.3 8.8 62 222-283 2-84 (198)
79 TIGR03804 para_beta_helix para 83.0 1.4 3E-05 28.6 2.8 39 261-311 5-43 (44)
80 PRK10123 wcaM putative colanic 77.1 10 0.00022 35.5 7.2 44 215-258 261-314 (464)
81 PF03211 Pectate_lyase: Pectat 76.8 12 0.00027 33.4 7.5 70 215-284 98-179 (215)
82 smart00710 PbH1 Parallel beta- 75.6 3.6 7.8E-05 22.5 2.6 22 263-284 1-23 (26)
83 PLN02698 Probable pectinestera 75.1 32 0.0007 34.7 10.9 88 217-310 265-385 (497)
84 PF07602 DUF1565: Protein of u 74.2 7.9 0.00017 35.4 5.8 87 214-310 89-188 (246)
85 COG3420 NosD Nitrous oxidase a 74.2 11 0.00025 35.9 6.8 47 174-231 122-168 (408)
86 PLN02773 pectinesterase 70.2 70 0.0015 30.4 11.3 42 93-136 17-61 (317)
87 KOG1777 Putative Zn-finger pro 70.1 37 0.00081 33.6 9.5 42 94-137 33-74 (625)
88 PF08480 Disaggr_assoc: Disagg 59.6 19 0.00042 31.4 4.9 59 245-309 2-75 (198)
89 COG4677 PemB Pectin methyleste 50.4 53 0.0011 31.4 6.5 64 217-280 184-270 (405)
90 PRK10531 acyl-CoA thioesterase 45.3 3E+02 0.0064 27.3 11.2 55 219-274 235-301 (422)
91 PF05279 Asp-B-Hydro_N: Aspart 40.7 17 0.00037 33.1 1.7 19 34-52 11-29 (243)
92 PLN02480 Probable pectinestera 40.0 88 0.0019 30.1 6.5 80 216-309 126-217 (343)
93 PF14592 Chondroitinas_B: Chon 37.9 1.7E+02 0.0037 29.0 8.2 84 226-311 227-323 (425)
94 PF07172 GRP: Glycine rich pro 33.9 42 0.00091 26.0 2.7 16 28-43 2-17 (95)
95 PF01095 Pectinesterase: Pecti 32.6 96 0.0021 29.1 5.5 77 218-309 83-167 (298)
96 PF03211 Pectate_lyase: Pectat 32.4 60 0.0013 29.1 3.8 60 213-276 54-118 (215)
97 PLN02671 pectinesterase 31.6 4.9E+02 0.011 25.2 10.9 80 215-309 147-238 (359)
98 PF11429 Colicin_D: Colicin D; 31.1 75 0.0016 24.5 3.6 38 80-123 10-48 (92)
99 cd07986 LPLAT_ACT14924-like Ly 26.9 64 0.0014 28.2 3.1 27 91-121 83-109 (210)
100 PF07157 DNA_circ_N: DNA circu 26.3 72 0.0016 24.7 2.8 38 73-117 47-84 (93)
101 PF10162 G8: G8 domain; Inter 24.7 2.5E+02 0.0054 22.5 6.0 36 110-147 11-46 (125)
102 PLN02708 Probable pectinestera 24.3 2.4E+02 0.0053 28.9 7.0 81 215-309 323-410 (553)
103 PLN02432 putative pectinestera 24.0 2.2E+02 0.0048 26.7 6.2 78 218-309 90-173 (293)
104 PLN02416 probable pectinestera 23.1 2.3E+02 0.005 29.0 6.6 79 217-309 312-397 (541)
105 PLN02665 pectinesterase family 22.8 2.8E+02 0.006 27.0 6.8 80 215-309 147-239 (366)
106 cd07990 LPLAT_LCLAT1-like Lyso 22.5 89 0.0019 26.8 3.1 33 90-123 85-117 (193)
107 PLN02217 probable pectinestera 22.3 3.4E+02 0.0074 28.6 7.7 43 92-136 261-306 (670)
108 PLN02682 pectinesterase family 22.1 3.5E+02 0.0076 26.3 7.3 81 215-309 156-248 (369)
109 PLN02176 putative pectinestera 21.8 3.9E+02 0.0084 25.7 7.5 77 219-309 119-208 (340)
110 PLN02201 probable pectinestera 21.2 2.9E+02 0.0063 28.2 6.8 80 216-309 287-373 (520)
111 PLN02170 probable pectinestera 21.2 3.2E+02 0.0069 28.0 7.0 81 215-309 306-393 (529)
112 PLN02933 Probable pectinestera 21.1 2.4E+02 0.0052 28.9 6.1 80 216-309 299-385 (530)
113 COG1730 GIM5 Predicted prefold 21.0 1.8E+02 0.0038 24.4 4.4 44 96-139 39-85 (145)
114 PLN02197 pectinesterase 20.0 3.1E+02 0.0068 28.4 6.8 78 217-308 359-443 (588)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.3e-46 Score=366.17 Aligned_cols=218 Identities=23% Similarity=0.427 Sum_probs=188.3
Q ss_pred CCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCC-ceeeccccc----cccceEEecCCceEEEeec
Q 021449 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPG-RWLTAPFNL----TSHMTLFLADDAEILAIEN 147 (312)
Q Consensus 73 ~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~G-tYl~~~i~L----~S~~tL~l~~ga~i~~~~d 147 (312)
.++++||+||||+|||.+|||+|||+||+++| ++.+|++|+||+| +|++++|.| +|+++|+++ |+|+++.+
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC--~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d 124 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMAC--SSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKD 124 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHh--ccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCC
Confidence 34799999999999999999999999999532 6678999999999 599999999 899999996 89999998
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEeccceEEecCCchhhhHhhhc---ccCCCCCceEEEeccccE
Q 021449 148 EKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQK---LLNNTRGPLVQIMWSSDI 224 (312)
Q Consensus 148 ~~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~---~~~~~r~~~i~~~~~~nv 224 (312)
+.+|+.. ....||++.+++||+|+| .|+|||+|+.||+..... .....||+++.|.+|+|+
T Consensus 125 ~~~w~~~---------------~~~~~i~~~~~~ni~ItG-~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv 188 (443)
T PLN02793 125 PDVWKGL---------------NPRKWLYFHGVNHLTVEG-GGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDL 188 (443)
T ss_pred hHHccCC---------------CCceEEEEecCceEEEEe-ceEEECCCcccccccccccCCCCccCCceEEEEEeeccE
Confidence 8888631 113589999999999999 799999999999753221 112358999999999999
Q ss_pred EEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC--------CCCCcccEEEEeeEEecCCceEEeccCCCc--------
Q 021449 225 LISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ--------LFDSCEDMVIEDCYISVGDDAIAIKSGWDQ-------- 288 (312)
Q Consensus 225 ~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~--------d~~~s~nV~I~n~~i~~gDD~Iaiksg~~~-------- 288 (312)
+|+|++++|+|+|++++..|+||+|+|++|.++. |+++|+||+|+||+|++|||||+||++...
T Consensus 189 ~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c 268 (443)
T PLN02793 189 RVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIAC 268 (443)
T ss_pred EEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEE
Confidence 9999999999999999999999999999999865 688999999999999999999999987543
Q ss_pred ---CCccCCC--------CeecEEEEeEEEeec
Q 021449 289 ---YGIAYGR--------PSMNILIRNLVVRSM 310 (312)
Q Consensus 289 ---~g~~~g~--------~~~nI~I~n~~v~~~ 310 (312)
+|++.|. .++||+|+||++.++
T Consensus 269 ~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t 301 (443)
T PLN02793 269 GPGHGISIGSLGKSNSWSEVRDITVDGAFLSNT 301 (443)
T ss_pred eCCccEEEecccCcCCCCcEEEEEEEccEEeCC
Confidence 4655553 589999999998865
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2.5e-46 Score=362.73 Aligned_cols=217 Identities=23% Similarity=0.414 Sum_probs=186.0
Q ss_pred CCCceEEeeeccccCCCccchHHHHHHHHH-HHHhhccCCCcEEEeCCC-ceeecccccc----ccceEEecCCceEEEe
Q 021449 72 LRPAAFNLTDFGGVGDGVTLNTEAFQRAVY-AISKLGKKGGGQLNVPPG-RWLTAPFNLT----SHMTLFLADDAEILAI 145 (312)
Q Consensus 72 ~~~~~~~v~dfGA~gDg~tddT~Aiq~AI~-a~~~~~~~gGgtv~iP~G-tYl~~~i~L~----S~~tL~l~~ga~i~~~ 145 (312)
.+++++||+||||+|||.+|||+|||+||+ +| ++.+|++|+||+| +|+++++.|+ ++++|++ +|+|+++
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aC---s~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s 137 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKAC---SSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSAS 137 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhh---hcCCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeC
Confidence 367899999999999999999999999996 55 6678899999999 6999999985 6778777 5999999
Q ss_pred ecCCCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEecc-ceEEecCCchhhhHhhhcc---cCCCCCceEEEecc
Q 021449 146 ENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGH-NGTINGQGQAWWKKYRQKL---LNNTRGPLVQIMWS 221 (312)
Q Consensus 146 ~d~~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~-~G~IdG~G~~ww~~~~~~~---~~~~r~~~i~~~~~ 221 (312)
++...|+. ...||.+.+++||+|+|. .|+|||||+.||+...... ....||+++.|.+|
T Consensus 138 ~d~~~y~~-----------------~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~ 200 (431)
T PLN02218 138 QKRSDYKD-----------------ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNS 200 (431)
T ss_pred CChhhccc-----------------cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEcc
Confidence 88877742 135789999999999993 3999999999998643221 12468999999999
Q ss_pred ccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC--------CCCCcccEEEEeeEEecCCceEEeccCCCc-----
Q 021449 222 SDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ--------LFDSCEDMVIEDCYISVGDDAIAIKSGWDQ----- 288 (312)
Q Consensus 222 ~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~--------d~~~s~nV~I~n~~i~~gDD~Iaiksg~~~----- 288 (312)
+|++|+||+++|+|+|++++..|+||+|+|++|.++. |+++|+||+|+||+|++||||||||+|+..
T Consensus 201 ~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n 280 (431)
T PLN02218 201 KSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQIND 280 (431)
T ss_pred ccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEe
Confidence 9999999999999999999999999999999999864 688999999999999999999999998642
Q ss_pred ------CCccCCC--------CeecEEEEeEEEeec
Q 021449 289 ------YGIAYGR--------PSMNILIRNLVVRSM 310 (312)
Q Consensus 289 ------~g~~~g~--------~~~nI~I~n~~v~~~ 310 (312)
+|+++|. .++||+|+||++.+.
T Consensus 281 ~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t 316 (431)
T PLN02218 281 ITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGT 316 (431)
T ss_pred EEEECCCCEEECcCCCCCCCceEEEEEEEccEEecC
Confidence 5665543 578999999998764
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=9.8e-45 Score=348.08 Aligned_cols=215 Identities=22% Similarity=0.353 Sum_probs=182.8
Q ss_pred CCCceEEeeeccccCCCccchHHHHHHHHH-HHHhhccCCCcEEEeCCCceeeccccc----cccceEEecCCceEEEee
Q 021449 72 LRPAAFNLTDFGGVGDGVTLNTEAFQRAVY-AISKLGKKGGGQLNVPPGRWLTAPFNL----TSHMTLFLADDAEILAIE 146 (312)
Q Consensus 72 ~~~~~~~v~dfGA~gDg~tddT~Aiq~AI~-a~~~~~~~gGgtv~iP~GtYl~~~i~L----~S~~tL~l~~ga~i~~~~ 146 (312)
..++++||+||||++||.+|||+|||+||+ +| ++.+|++|+||+|+|++++|.| ||+++|+|+ | +|+++.
T Consensus 23 ~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC---~~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~-G-~l~~~~ 97 (394)
T PLN02155 23 SASNVFNVVSFGAKPDGVTDSTAAFLKAWQGAC---GSASSATVVVPTGTFLLKVITFGGPCKSKITFQVA-G-TVVAPE 97 (394)
T ss_pred cCCcEEEhhhcCcCCCCccccHHHHHHHHHHHc---ccCCCeEEEECCCcEEEEEEEEcccCCCCceEEEe-e-EEECcc
Confidence 356799999999999999999999999996 66 6678999999999999999998 899999997 4 777665
Q ss_pred cCCCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEE
Q 021449 147 NEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILI 226 (312)
Q Consensus 147 d~~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I 226 (312)
+...|. .+ ..||.+.+++|+.|+| |+|||||+.||+..+.......+|+++.|.+|+|++|
T Consensus 98 d~~~~~-----------~~------~~wi~~~~~~~i~i~G--G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i 158 (394)
T PLN02155 98 DYRTFG-----------NS------GYWILFNKVNRFSLVG--GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVII 158 (394)
T ss_pred cccccc-----------cc------ceeEEEECcCCCEEEc--cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEE
Confidence 543331 10 2378999999999999 9999999999975432222234678999999999999
Q ss_pred EeeEEEcCCCCeeeecccccEEEEeEEEeeCC--------CCCCcccEEEEeeEEecCCceEEeccCCCc----------
Q 021449 227 SNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ--------LFDSCEDMVIEDCYISVGDDAIAIKSGWDQ---------- 288 (312)
Q Consensus 227 ~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~--------d~~~s~nV~I~n~~i~~gDD~Iaiksg~~~---------- 288 (312)
++|+++|||+|++++..|+||+|++++|.++. |+++|+||+|+||+|++||||||||+++..
T Consensus 159 ~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~ 238 (394)
T PLN02155 159 SGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGP 238 (394)
T ss_pred ECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEEC
Confidence 99999999999999999999999999999865 688999999999999999999999998632
Q ss_pred -CCccCCC--------CeecEEEEeEEEeec
Q 021449 289 -YGIAYGR--------PSMNILIRNLVVRSM 310 (312)
Q Consensus 289 -~g~~~g~--------~~~nI~I~n~~v~~~ 310 (312)
+|++.|. .++||+|+||++.+.
T Consensus 239 GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t 269 (394)
T PLN02155 239 GHGVSIGSLAKELNEDGVENVTVSSSVFTGS 269 (394)
T ss_pred CceEEeccccccCCCCcEEEEEEEeeEEeCC
Confidence 4655543 479999999999865
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=3.1e-44 Score=345.91 Aligned_cols=212 Identities=24% Similarity=0.373 Sum_probs=181.0
Q ss_pred CCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCCceeecccccc------ccceEEecCCceEEEee
Q 021449 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT------SHMTLFLADDAEILAIE 146 (312)
Q Consensus 73 ~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~------S~~tL~l~~ga~i~~~~ 146 (312)
.+.++||+||||+|||.+|||+|||+||+++| ++.||++|+||+|+|+++++.|+ ++++| +|++++
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC--~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L~~s~ 104 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAAC--ASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TLKAAT 104 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHh--ccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EEEcCC
Confidence 55799999999999999999999999997542 66788999999999999999996 44444 888888
Q ss_pred cCCCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEeccceEEecCCchhhhHhhhc--ccCCCCCceEEEeccccE
Q 021449 147 NEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQK--LLNNTRGPLVQIMWSSDI 224 (312)
Q Consensus 147 d~~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~--~~~~~r~~~i~~~~~~nv 224 (312)
+.++|+.. ..|+.+..++||+|+| .|+|||||+.||+..... .....||+++.|.+|+|+
T Consensus 105 d~~~y~~~-----------------~~~i~~~~~~ni~I~G-~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv 166 (404)
T PLN02188 105 DLSRYGSG-----------------NDWIEFGWVNGLTLTG-GGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNT 166 (404)
T ss_pred CHHHCCCc-----------------cceEEEeceeeEEEEe-eEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeE
Confidence 88887521 2367777899999999 799999999999743211 123468999999999999
Q ss_pred EEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC--------CCCCcccEEEEeeEEecCCceEEeccCCCc--------
Q 021449 225 LISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ--------LFDSCEDMVIEDCYISVGDDAIAIKSGWDQ-------- 288 (312)
Q Consensus 225 ~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~--------d~~~s~nV~I~n~~i~~gDD~Iaiksg~~~-------- 288 (312)
+|+|++++|||+|++++..|+||+|++++|.++. |+++|+||+|+||+|++|||||+||+++.+
T Consensus 167 ~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c 246 (404)
T PLN02188 167 VVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRC 246 (404)
T ss_pred EEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEE
Confidence 9999999999999999999999999999999864 688999999999999999999999998743
Q ss_pred ---CCccCCC--------CeecEEEEeEEEeec
Q 021449 289 ---YGIAYGR--------PSMNILIRNLVVRSM 310 (312)
Q Consensus 289 ---~g~~~g~--------~~~nI~I~n~~v~~~ 310 (312)
+|++.|. .++||+|+||++.++
T Consensus 247 ~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t 279 (404)
T PLN02188 247 GPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGT 279 (404)
T ss_pred cCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECC
Confidence 5666543 589999999999875
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=7.6e-43 Score=335.87 Aligned_cols=205 Identities=28% Similarity=0.435 Sum_probs=177.6
Q ss_pred CCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCC-CcEEEeCCC-ceeeccccccc-----cceEEecCCceEEEe
Q 021449 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKG-GGQLNVPPG-RWLTAPFNLTS-----HMTLFLADDAEILAI 145 (312)
Q Consensus 73 ~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~g-Ggtv~iP~G-tYl~~~i~L~S-----~~tL~l~~ga~i~~~ 145 (312)
.+.++||+||||+|||.+|||+|||+||+++| +..+ +++|+||+| +|++++|.|++ +++|+++ |+|+++
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac--~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~~ 118 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATC--GGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVAP 118 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHc--cCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEcc
Confidence 55789999999999999999999999999763 3222 379999999 79999999995 6777775 899999
Q ss_pred ecCCCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEE
Q 021449 146 ENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDIL 225 (312)
Q Consensus 146 ~d~~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~ 225 (312)
.+..+|+... ...||.+.+++||+|+| .|+|||+|+.||. ++.|.+|+|++
T Consensus 119 ~d~~~w~~~~---------------~~~wi~f~~v~nv~I~G-~G~IDG~G~~ww~-------------~l~~~~~~nv~ 169 (409)
T PLN03010 119 SNIVAWSNPK---------------SQMWISFSTVSGLMIDG-SGTIDGRGSSFWE-------------ALHISKCDNLT 169 (409)
T ss_pred CChhhccCCC---------------CcceEEEecccccEEee-ceEEeCCCccccc-------------eEEEEeecCeE
Confidence 9888885310 13578899999999999 7999999999995 58999999999
Q ss_pred EEeeEEEcCCCCeeeecccccEEEEeEEEeeCC--------CCCCcccEEEEeeEEecCCceEEeccCCCc---------
Q 021449 226 ISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ--------LFDSCEDMVIEDCYISVGDDAIAIKSGWDQ--------- 288 (312)
Q Consensus 226 I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~--------d~~~s~nV~I~n~~i~~gDD~Iaiksg~~~--------- 288 (312)
|+||+++|+|+|++++..|+||+|+|++|.++. |+++|+||+|+||+|++||||||||+|+..
T Consensus 170 v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~ 249 (409)
T PLN03010 170 INGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCG 249 (409)
T ss_pred EeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeE
Confidence 999999999999999999999999999999965 688999999999999999999999998632
Q ss_pred --CCccCCC--------CeecEEEEeEEEeec
Q 021449 289 --YGIAYGR--------PSMNILIRNLVVRSM 310 (312)
Q Consensus 289 --~g~~~g~--------~~~nI~I~n~~v~~~ 310 (312)
+|+++|. .++||+|+||++.++
T Consensus 250 ~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t 281 (409)
T PLN03010 250 PGHGISVGSLGADGANAKVSDVHVTHCTFNQT 281 (409)
T ss_pred CcCCEEEccCCCCCCCCeeEEEEEEeeEEeCC
Confidence 4655543 389999999999875
No 6
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.8e-42 Score=335.59 Aligned_cols=212 Identities=32% Similarity=0.590 Sum_probs=181.0
Q ss_pred CCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCC-ceeeccccccccc---eEEecCCceEEEeecC
Q 021449 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPG-RWLTAPFNLTSHM---TLFLADDAEILAIENE 148 (312)
Q Consensus 73 ~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~G-tYl~~~i~L~S~~---tL~l~~ga~i~~~~d~ 148 (312)
.+.++||+||||+|||.+|||+|||+||++|| ++.+|++|+||+| +|+++++.|++++ .++++..++|++...
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC--~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~- 96 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVC--SGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK- 96 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhh--hccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-
Confidence 56689999999999999999999999999963 5678999999999 5899999998743 355666678876532
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEe
Q 021449 149 KYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISN 228 (312)
Q Consensus 149 ~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~n 228 (312)
..|. +. ...||.+.++++++|+| .|+|||||+.||+. ...||+++.|.+|+|++|+|
T Consensus 97 ~~w~----------~~------~~~wI~f~~~~~i~I~G-~GtIDGqG~~wW~~------~~~rP~~l~f~~~~nv~I~g 153 (456)
T PLN03003 97 GNWK----------GD------KDQWILFTDIEGLVIEG-DGEINGQGSSWWEH------KGSRPTALKFRSCNNLRLSG 153 (456)
T ss_pred cccc----------CC------CcceEEEEcccceEEec-cceEeCCchhhhhc------ccCCceEEEEEecCCcEEeC
Confidence 2342 11 13589999999999999 69999999999974 24689999999999999999
Q ss_pred eEEEcCCCCeeeecccccEEEEeEEEeeCC--------CCCCcccEEEEeeEEecCCceEEeccCCCc-----------C
Q 021449 229 ITLRDSPFWTLHPYDCKNVTIRNAFISKIQ--------LFDSCEDMVIEDCYISVGDDAIAIKSGWDQ-----------Y 289 (312)
Q Consensus 229 vti~ns~~~~i~i~~~~nV~I~n~~I~~~~--------d~~~s~nV~I~n~~i~~gDD~Iaiksg~~~-----------~ 289 (312)
++++|||+|++++..|+||+|+|++|.++. |+++|+||+|+||+|++||||||||+|+.. +
T Consensus 154 itl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GH 233 (456)
T PLN03003 154 LTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGH 233 (456)
T ss_pred eEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCC
Confidence 999999999999999999999999999975 688999999999999999999999999632 5
Q ss_pred CccCCC--------CeecEEEEeEEEeec
Q 021449 290 GIAYGR--------PSMNILIRNLVVRSM 310 (312)
Q Consensus 290 g~~~g~--------~~~nI~I~n~~v~~~ 310 (312)
|+++|. .++||+|+||++.++
T Consensus 234 GISIGSlg~~g~~~~V~NV~v~n~~~~~T 262 (456)
T PLN03003 234 GISIGSLGKDGETATVENVCVQNCNFRGT 262 (456)
T ss_pred CeEEeeccCCCCcceEEEEEEEeeEEECC
Confidence 665543 489999999999875
No 7
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.5e-38 Score=307.79 Aligned_cols=234 Identities=36% Similarity=0.575 Sum_probs=190.1
Q ss_pred CCCCCCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccccccceEEecCCceEEEeecC
Q 021449 69 IPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENE 148 (312)
Q Consensus 69 ~~~~~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~S~~tL~l~~ga~i~~~~d~ 148 (312)
.+......++|++|||++||.++|++|||+||++| ++++|++|+||+|+|+.++|.|||+++|++++|+||+++.++
T Consensus 75 ~~~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~c---a~a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p 151 (542)
T COG5434 75 KTAATDTAFSVSDDGAVGDGATDNTAAIQAAIDAC---ASAGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNP 151 (542)
T ss_pred ccccccceeeeccccccccCCccCHHHHHHHHHhh---hhhcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCCh
Confidence 33445678999999999999999999999999999 557999999999999999999999999999999999999999
Q ss_pred CCCCCCCC------------CCC-----CCCCCcCCCCCccccEEEeceeeEE-EeccceEEecCC----chhhhHhh--
Q 021449 149 KYWPLMPP------------LPS-----YGYGREHHGPRFGSFIHGQNLKDVV-ITGHNGTINGQG----QAWWKKYR-- 204 (312)
Q Consensus 149 ~~~~~~~~------------~~~-----~~~G~~~~~~~~~~lI~~~~~~nI~-I~G~~G~IdG~G----~~ww~~~~-- 204 (312)
+.|+.... .++ +++|... . +..++.....+|.. |.| .++++|++ ..||....
T Consensus 152 ~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d--~-~~~~~~~~~~~n~~~i~g-~~~i~g~~~~~g~~~~~~~g~~ 227 (542)
T COG5434 152 KDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLAD--G-KADLLIAGNSSNRKEIWG-KGTIDGNGYKRGDKWFSGLGAV 227 (542)
T ss_pred hhccccccccccccCcceeeecccCceeeeecccc--c-CcccceeccCCceEEEec-cceecCccccchhhhhhcccch
Confidence 99984110 000 1112111 1 12333334446655 999 69999975 22775433
Q ss_pred hcccCC--CCCceEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC-------CCCCcccEEEEeeEEec
Q 021449 205 QKLLNN--TRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ-------LFDSCEDMVIEDCYISV 275 (312)
Q Consensus 205 ~~~~~~--~r~~~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~-------d~~~s~nV~I~n~~i~~ 275 (312)
..+... .||..+.+..|.|++++|++|.|+|.|++|+..|+|++++|++|.++. |+++|+||+|++|+|++
T Consensus 228 ~~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt 307 (542)
T COG5434 228 ETRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT 307 (542)
T ss_pred hhcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec
Confidence 122233 689999999999999999999999999999999999999999999986 68999999999999999
Q ss_pred CCceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 276 GDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 276 gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
|||||++|+|....+-..+.|++||+|+||++..
T Consensus 308 gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ 341 (542)
T COG5434 308 GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSS 341 (542)
T ss_pred CCceEEeecccCCcccccccccccEEEecceecc
Confidence 9999999999876654566789999999999874
No 8
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.97 E-value=1.5e-31 Score=252.77 Aligned_cols=184 Identities=36% Similarity=0.611 Sum_probs=144.4
Q ss_pred hccCCCcEEEeCCCceeeccccccc----cceEEecCCceEEEeecCCCCCCCCCCCCCCCCCcCCCCCccccEEEecee
Q 021449 106 LGKKGGGQLNVPPGRWLTAPFNLTS----HMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLK 181 (312)
Q Consensus 106 ~~~~gGgtv~iP~GtYl~~~i~L~S----~~tL~l~~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~ 181 (312)
|++.++++|+||+|+|+++++.|++ ++++.|+ +++.+..+...++ . .++|++.+++
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~--G~~~~~~~~~~~~-----------------~-~~~i~~~~~~ 60 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLD--GTINFSYDNWEGP-----------------N-SALIYAENAE 60 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECETTCEEEEE--SEEEEG-EESTSE-------------------SEEEEEESEE
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEE--EEEEeCCCcccCC-----------------c-cEEEEEEceE
Confidence 3666788999999999999999995 4444443 3444332211111 1 4689999999
Q ss_pred eEEEeccceEEecCCchhhhHhhhc-ccCCCCCceEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC--
Q 021449 182 DVVITGHNGTINGQGQAWWKKYRQK-LLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ-- 258 (312)
Q Consensus 182 nI~I~G~~G~IdG~G~~ww~~~~~~-~~~~~r~~~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~-- 258 (312)
|++|+| .|+|||||+.||+..... .....||+++.|.+|+|++|+|++++|+|+|++++..|+||+|++++|.++.
T Consensus 61 ni~i~G-~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~ 139 (326)
T PF00295_consen 61 NITITG-KGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANS 139 (326)
T ss_dssp EEECTT-SSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGC
T ss_pred EEEecC-CceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCC
Confidence 999999 799999999999864331 3456789999999999999999999999999999999999999999999874
Q ss_pred ------CCCCcccEEEEeeEEecCCceEEeccCCCc-----------CCccCC---C-----CeecEEEEeEEEeec
Q 021449 259 ------LFDSCEDMVIEDCYISVGDDAIAIKSGWDQ-----------YGIAYG---R-----PSMNILIRNLVVRSM 310 (312)
Q Consensus 259 ------d~~~s~nV~I~n~~i~~gDD~Iaiksg~~~-----------~g~~~g---~-----~~~nI~I~n~~v~~~ 310 (312)
|+++|+||+|+||+|++||||||+|++... +|++.| . ..+||+|+||++.+.
T Consensus 140 ~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t 216 (326)
T PF00295_consen 140 PNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINT 216 (326)
T ss_dssp TS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESE
T ss_pred CCcceEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeecc
Confidence 678999999999999999999999998732 344432 2 368888888888764
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.93 E-value=2.3e-25 Score=213.15 Aligned_cols=176 Identities=21% Similarity=0.269 Sum_probs=149.6
Q ss_pred CCCCCCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccccccceEEecCCceEEEeecC
Q 021449 69 IPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENE 148 (312)
Q Consensus 69 ~~~~~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~S~~tL~l~~ga~i~~~~d~ 148 (312)
+|..+...+++++|||++||.+|+|+|||+||++| + .+|++|.+|||+|++++|.|+++++|..+++++.+..+
T Consensus 30 ~p~~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaA---a-~gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt~~vId-- 103 (455)
T TIGR03808 30 APLTSTLGRDATQYGVRPNSPDDQTRALQRAIDEA---A-RAQTPLALPPGVYRTGPLRLPSGAQLIGVRGATRLVFT-- 103 (455)
T ss_pred cCCCCccCCCHHHcCcCCCCcchHHHHHHHHHHHh---h-cCCCEEEECCCceecccEEECCCcEEEecCCcEEEEEc--
Confidence 45556667999999999999999999999999997 3 46789999999999999999999999999888733111
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEe
Q 021449 149 KYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISN 228 (312)
Q Consensus 149 ~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~n 228 (312)
|. ..++...+++||+|+| -+|+|+|..| ..|+.+|.+..|++++|+|
T Consensus 104 --------------G~-------~~lIiai~A~nVTIsG--LtIdGsG~dl----------~~rdAgI~v~~a~~v~Ied 150 (455)
T TIGR03808 104 --------------GG-------PSLLSSEGADGIGLSG--LTLDGGGIPL----------PQRRGLIHCQGGRDVRITD 150 (455)
T ss_pred --------------CC-------ceEEEEecCCCeEEEe--eEEEeCCCcc----------cCCCCEEEEccCCceEEEe
Confidence 00 2467778899999999 5999999653 2467799999999999999
Q ss_pred eEEEcCCCCeeeecccccEEEEeEEEeeCC----CCCCcccEEEEeeEE-ecCCceEEecc
Q 021449 229 ITLRDSPFWTLHPYDCKNVTIRNAFISKIQ----LFDSCEDMVIEDCYI-SVGDDAIAIKS 284 (312)
Q Consensus 229 vti~ns~~~~i~i~~~~nV~I~n~~I~~~~----d~~~s~nV~I~n~~i-~~gDD~Iaiks 284 (312)
++|.++..|+|.+..|+ ..|.+.+|.... +.+.+++++|++++| .+.|++|.|..
T Consensus 151 n~L~gsg~FGI~L~~~~-~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r 210 (455)
T TIGR03808 151 CEITGSGGNGIWLETVS-GDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILR 210 (455)
T ss_pred eEEEcCCcceEEEEcCc-ceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEE
Confidence 99999999999999999 778888888776 578999999999999 67899999883
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.84 E-value=8.8e-20 Score=161.87 Aligned_cols=192 Identities=26% Similarity=0.311 Sum_probs=115.9
Q ss_pred eEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCCceeecc-ccccccceEEecCCc-eEEEee-cCCCCC
Q 021449 76 AFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAP-FNLTSHMTLFLADDA-EILAIE-NEKYWP 152 (312)
Q Consensus 76 ~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~-i~L~S~~tL~l~~ga-~i~~~~-d~~~~~ 152 (312)
.+||+||||++||.+|||+|||+||+++ ++.+|++|+||||+|++.. +.++++++|+.+.++ +++... ....+.
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~---~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~ 77 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA---AAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFS 77 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH---CSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSC
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc---ccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccc
Confidence 4799999999999999999999999666 5679999999999998765 999999999986553 333322 111111
Q ss_pred CCCCCCCCCCCCcCCCCCccccEEEec-eee--EEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEee
Q 021449 153 LMPPLPSYGYGREHHGPRFGSFIHGQN-LKD--VVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNI 229 (312)
Q Consensus 153 ~~~~~~~~~~G~~~~~~~~~~lI~~~~-~~n--I~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nv 229 (312)
... ....... -.+ +.|++ -+|+|++... ......+.+..++++.|+++
T Consensus 78 ~~~-----------------~~~~~~~~~~~~~~~i~n--l~i~~~~~~~----------~~~~~~i~~~~~~~~~i~nv 128 (225)
T PF12708_consen 78 VVP-----------------GIGVFDSGNSNIGIQIRN--LTIDGNGIDP----------NNNNNGIRFNSSQNVSISNV 128 (225)
T ss_dssp CEE-----------------EEEECCSCSCCEEEEEEE--EEEEETCGCE-----------SCEEEEEETTEEEEEEEEE
T ss_pred ccc-----------------ceeeeecCCCCceEEEEe--eEEEcccccC----------CCCceEEEEEeCCeEEEEeE
Confidence 000 0000000 011 22444 4455444320 01134788999999999999
Q ss_pred EEEcCCCCeeeecccccEEEE------eEEEee--------------CCCC--CCcccEEEEeeEEec-CCceEEeccCC
Q 021449 230 TLRDSPFWTLHPYDCKNVTIR------NAFISK--------------IQLF--DSCEDMVIEDCYISV-GDDAIAIKSGW 286 (312)
Q Consensus 230 ti~ns~~~~i~i~~~~nV~I~------n~~I~~--------------~~d~--~~s~nV~I~n~~i~~-gDD~Iaiksg~ 286 (312)
++.|+...++.+..++...+. ++.+.. ..+. .+.++++|+||.+.. ...+|.+..+
T Consensus 129 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~n~~~~~~~~~gi~i~~~- 207 (225)
T PF12708_consen 129 RIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIFNGGDNGIILGNNNITISNNTFEGNCGNGINIEGG- 207 (225)
T ss_dssp EEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEEESSSCSEECEEEEEEEECEEEESSSSESEEEEEC-
T ss_pred EEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCccccCCCceeEeecceEEEEeEEECCccceeEEEECC-
Confidence 999987766666543332221 222222 2111 123688888888865 7778877764
Q ss_pred CcCCccCCCCeecEEEEeEEEeecC
Q 021449 287 DQYGIAYGRPSMNILIRNLVVRSMV 311 (312)
Q Consensus 287 ~~~g~~~g~~~~nI~I~n~~v~~~~ 311 (312)
.+++|+||++++++
T Consensus 208 -----------~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 208 -----------SNIIISNNTIENCD 221 (225)
T ss_dssp -----------SEEEEEEEEEESSS
T ss_pred -----------eEEEEEeEEEECCc
Confidence 34788888887764
No 11
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.41 E-value=3.8e-12 Score=124.00 Aligned_cols=159 Identities=22% Similarity=0.320 Sum_probs=97.0
Q ss_pred CCcEEEeCCCceeecc---ccccccc-eEEecCCceEEEeecCCCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEE
Q 021449 110 GGGQLNVPPGRWLTAP---FNLTSHM-TLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVI 185 (312)
Q Consensus 110 gGgtv~iP~GtYl~~~---i~L~S~~-tL~l~~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I 185 (312)
...+|||+||+|.++. +.|++++ +++|++||.+++.- ......+|+.|
T Consensus 231 s~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGAf----------------------------~~~~~~~nv~i 282 (582)
T PF03718_consen 231 SKDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGAF----------------------------EYTDTQQNVKI 282 (582)
T ss_dssp SSSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-E----------------------------EE---SSEEEE
T ss_pred CcceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEEE----------------------------EEccCCceEEE
Confidence 3569999999998765 8899885 89999999887542 22245699999
Q ss_pred eccceEEecCCchhhhHhhhccc--------CCCCCceEE---EeccccEEEEeeEEEcCCCCeeeecccc----cEEEE
Q 021449 186 TGHNGTINGQGQAWWKKYRQKLL--------NNTRGPLVQ---IMWSSDILISNITLRDSPFWTLHPYDCK----NVTIR 250 (312)
Q Consensus 186 ~G~~G~IdG~G~~ww~~~~~~~~--------~~~r~~~i~---~~~~~nv~I~nvti~ns~~~~i~i~~~~----nV~I~ 250 (312)
+| .|++.|.--.|-........ ....-+++. ...+++..++|++|.++|+|.+.+.+-+ ++.|+
T Consensus 283 ~G-~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~ 361 (582)
T PF03718_consen 283 TG-RGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNIS 361 (582)
T ss_dssp ES-SSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEE
T ss_pred Ee-eEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceee
Confidence 99 69999976554211110000 011123554 3556799999999999999999998555 58999
Q ss_pred eEEEeeCC----C-CCCcccEEEEeeEEecCCceEEeccCCCcCCccCCCCeecEEEEeEEEeec
Q 021449 251 NAFISKIQ----L-FDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 251 n~~I~~~~----d-~~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~~ 310 (312)
|.++...+ | +.-+++=+|+||++.+.||+|-+- ..|+.|+||++|.+
T Consensus 362 nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~nDD~iKlY-------------hS~v~v~~~ViWk~ 413 (582)
T PF03718_consen 362 NYKQVGAWYFQTDGIELYPNSTIRDCFIHVNDDAIKLY-------------HSNVSVSNTVIWKN 413 (582)
T ss_dssp EEEEE---CTT----B--TT-EEEEEEEEESS-SEE---------------STTEEEEEEEEEE-
T ss_pred ceeeeeeEEeccCCccccCCCeeeeeEEEecCchhhee-------------ecCcceeeeEEEec
Confidence 99999866 3 556789999999999999999442 25666677766653
No 12
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.34 E-value=4e-11 Score=113.03 Aligned_cols=170 Identities=15% Similarity=0.209 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhccCCCcEEEeCCCceee-cccccc-ccceEEecCC--ceEEEeecCCCCCCCCCCCCCCCCCcCCCCCc
Q 021449 96 FQRAVYAISKLGKKGGGQLNVPPGRWLT-APFNLT-SHMTLFLADD--AEILAIENEKYWPLMPPLPSYGYGREHHGPRF 171 (312)
Q Consensus 96 iq~AI~a~~~~~~~gGgtv~iP~GtYl~-~~i~L~-S~~tL~l~~g--a~i~~~~d~~~~~~~~~~~~~~~G~~~~~~~~ 171 (312)
||+||++| +.|.+|+||+|+|.. ++|.+. ++++|..+.. ++|.+.... + +
T Consensus 1 iQ~Ai~~A-----~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~---~----------~-------- 54 (314)
T TIGR03805 1 LQEALIAA-----QPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQV---G----------G-------- 54 (314)
T ss_pred CHhHHhhC-----CCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCC---C----------C--------
Confidence 69999987 479999999999974 678886 7788765422 333332110 0 0
Q ss_pred cccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEE-------cCCCCeeeeccc
Q 021449 172 GSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLR-------DSPFWTLHPYDC 244 (312)
Q Consensus 172 ~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~-------ns~~~~i~i~~~ 244 (312)
..-|.. .+++|+|+| -+|.+.+ ...|.+..|++++|+++++. ....++|.+..|
T Consensus 55 ~~~i~v-~a~~VtI~~--ltI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s 115 (314)
T TIGR03805 55 AEGLLV-TSDDVTLSD--LAVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVES 115 (314)
T ss_pred CceEEE-EeCCeEEEe--eEEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEecc
Confidence 011211 246777776 3443221 12455566666666666664 123456666666
Q ss_pred ccEEEEeEEEeeCCC----CCCcccEEEEeeEEecCCceEEeccCCCc-----------CCccC-------CCCeecEEE
Q 021449 245 KNVTIRNAFISKIQL----FDSCEDMVIEDCYISVGDDAIAIKSGWDQ-----------YGIAY-------GRPSMNILI 302 (312)
Q Consensus 245 ~nV~I~n~~I~~~~d----~~~s~nV~I~n~~i~~gDD~Iaiksg~~~-----------~g~~~-------g~~~~nI~I 302 (312)
++++|+++++....| +..|++++|+||.+.....||.+....+. -|+.. -+.++++.|
T Consensus 116 ~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v 195 (314)
T TIGR03805 116 TNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEENVAGIEIENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRV 195 (314)
T ss_pred CCEEEECCEEECCCcccEEECCCCCeEEECCEEccCcceEEEEecCCcEEECCEEeccceeEEEeecCCCCcCCccceEE
Confidence 666666666665543 34555666666666544445554321110 01111 124678888
Q ss_pred EeEEEeec
Q 021449 303 RNLVVRSM 310 (312)
Q Consensus 303 ~n~~v~~~ 310 (312)
+++++.++
T Consensus 196 ~~N~i~~n 203 (314)
T TIGR03805 196 FDNIIFDN 203 (314)
T ss_pred ECCEEECC
Confidence 88888764
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=98.90 E-value=2.2e-08 Score=95.04 Aligned_cols=116 Identities=30% Similarity=0.384 Sum_probs=81.7
Q ss_pred cccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcCCC----CeeeecccccE
Q 021449 172 GSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPF----WTLHPYDCKNV 247 (312)
Q Consensus 172 ~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns~~----~~i~i~~~~nV 247 (312)
..++.+.+++|++|+| -++. +.. .| .+.+.+|+|++|++++|.++.. .++.+..|+||
T Consensus 92 p~~i~~~~~~~~~i~~--i~~~-nsp-~w--------------~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv 153 (326)
T PF00295_consen 92 PRLIRFNNCKNVTIEG--ITIR-NSP-FW--------------HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNV 153 (326)
T ss_dssp SESEEEEEEEEEEEES--EEEE-S-S-SE--------------SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEE
T ss_pred cceeeeeeecceEEEe--eEec-CCC-ee--------------EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEE
Confidence 3588999999999999 3443 111 12 4788999999999999997643 47999999999
Q ss_pred EEEeEEEeeCCC---CCC-c------------------------------ccEEEEeeEEecCCceEEeccCCCcCCccC
Q 021449 248 TIRNAFISKIQL---FDS-C------------------------------EDMVIEDCYISVGDDAIAIKSGWDQYGIAY 293 (312)
Q Consensus 248 ~I~n~~I~~~~d---~~~-s------------------------------~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~ 293 (312)
+|+|+.|.+.+| +.+ + +||+++||.|...+.++.||+..+ -
T Consensus 154 ~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-----~ 228 (326)
T PF00295_consen 154 TIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-----G 228 (326)
T ss_dssp EEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT-----T
T ss_pred EEEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc-----c
Confidence 999999999873 111 1 455555555544455555555221 1
Q ss_pred CCCeecEEEEeEEEeec
Q 021449 294 GRPSMNILIRNLVVRSM 310 (312)
Q Consensus 294 g~~~~nI~I~n~~v~~~ 310 (312)
+..++||+++|.++.+-
T Consensus 229 ~G~v~nI~f~ni~~~~v 245 (326)
T PF00295_consen 229 GGYVSNITFENITMENV 245 (326)
T ss_dssp SEEEEEEEEEEEEEEEE
T ss_pred ceEEeceEEEEEEecCC
Confidence 23689999999998763
No 14
>PLN02793 Probable polygalacturonase
Probab=98.89 E-value=1.5e-08 Score=99.53 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=79.6
Q ss_pred ccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcCC----CCeeeecccccEE
Q 021449 173 SFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSP----FWTLHPYDCKNVT 248 (312)
Q Consensus 173 ~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns~----~~~i~i~~~~nV~ 248 (312)
.+|.+.+++|++|+| -++.- .. .| .+.+.+|+|++|+|++|.++. ..+|++..|+||+
T Consensus 178 ~~i~f~~~~nv~v~g--itl~n-Sp-~~--------------~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~ 239 (443)
T PLN02793 178 TAITFHKCKDLRVEN--LNVID-SQ-QM--------------HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVV 239 (443)
T ss_pred eEEEEEeeccEEEEC--eEEEc-CC-Ce--------------EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEE
Confidence 478899999999999 34431 11 12 378899999999999998742 3479999999999
Q ss_pred EEeEEEeeCCC---C-CCcccEEEEeeEE------------------------------ecCCceEEeccCCCcCCccCC
Q 021449 249 IRNAFISKIQL---F-DSCEDMVIEDCYI------------------------------SVGDDAIAIKSGWDQYGIAYG 294 (312)
Q Consensus 249 I~n~~I~~~~d---~-~~s~nV~I~n~~i------------------------------~~gDD~Iaiksg~~~~g~~~g 294 (312)
|+|++|.+.+| + .+|+||+|+||.+ ...+.++.||+..+. +
T Consensus 240 I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~-----~ 314 (443)
T PLN02793 240 IKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGG-----S 314 (443)
T ss_pred EEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCC-----C
Confidence 99999999874 1 2344555555544 444445555543221 2
Q ss_pred CCeecEEEEeEEEee
Q 021449 295 RPSMNILIRNLVVRS 309 (312)
Q Consensus 295 ~~~~nI~I~n~~v~~ 309 (312)
..++||+++|.++.+
T Consensus 315 G~v~nItf~ni~m~n 329 (443)
T PLN02793 315 GNASKITFQNIFMEN 329 (443)
T ss_pred EEEEEEEEEeEEEec
Confidence 368999999988875
No 15
>PLN02218 polygalacturonase ADPG
Probab=98.77 E-value=6.6e-08 Score=94.71 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=87.5
Q ss_pred ccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcC---C-CCeeeecccccEE
Q 021449 173 SFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDS---P-FWTLHPYDCKNVT 248 (312)
Q Consensus 173 ~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns---~-~~~i~i~~~~nV~ 248 (312)
.+|.+.+++|++|+| -++.-. ..| .+.+.+|+|++|+|++|.++ | -.+|++..|+||+
T Consensus 193 ~~i~f~~~~nv~I~g--itl~nS--p~w--------------~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~ 254 (431)
T PLN02218 193 TALTFYNSKSLIVKN--LRVRNA--QQI--------------QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIR 254 (431)
T ss_pred EEEEEEccccEEEeC--eEEEcC--CCE--------------EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEE
Confidence 478899999999999 454321 112 48899999999999999863 3 2479999999999
Q ss_pred EEeEEEeeCCC----CCCcccEEEEeeEEecCCceEEeccCC-Cc-------------------CCcc------CCCCee
Q 021449 249 IRNAFISKIQL----FDSCEDMVIEDCYISVGDDAIAIKSGW-DQ-------------------YGIA------YGRPSM 298 (312)
Q Consensus 249 I~n~~I~~~~d----~~~s~nV~I~n~~i~~gDD~Iaiksg~-~~-------------------~g~~------~g~~~~ 298 (312)
|+|++|.+.+| -.+|+||+|+||++..|. +|+|+|-. +. .|++ -+..++
T Consensus 255 I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GH-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~ 333 (431)
T PLN02218 255 VSNSIIGTGDDCISIESGSQNVQINDITCGPGH-GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTAS 333 (431)
T ss_pred EEccEEecCCceEEecCCCceEEEEeEEEECCC-CEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEE
Confidence 99999999985 235778888888886554 57777722 10 1221 123789
Q ss_pred cEEEEeEEEee
Q 021449 299 NILIRNLVVRS 309 (312)
Q Consensus 299 nI~I~n~~v~~ 309 (312)
||+++|.++.+
T Consensus 334 nI~f~ni~m~~ 344 (431)
T PLN02218 334 NIIFQNIQMEN 344 (431)
T ss_pred EEEEEeEEEEc
Confidence 99999999876
No 16
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.73 E-value=8e-08 Score=90.69 Aligned_cols=104 Identities=20% Similarity=0.283 Sum_probs=78.3
Q ss_pred eeEEEecc---ceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeC
Q 021449 181 KDVVITGH---NGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKI 257 (312)
Q Consensus 181 ~nI~I~G~---~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~ 257 (312)
++|+|.|. .-+||+.++. .....+ +..+++++|+++++++++.+++.+..|++++|+++++...
T Consensus 32 ~~Iti~G~g~~~tvid~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~ 98 (314)
T TIGR03805 32 DGVTIRGAGMDETILDFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWT 98 (314)
T ss_pred CCeEEEecCCCccEEecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEec
Confidence 78999884 1347776642 112344 4469999999999999999999999999999999999743
Q ss_pred C-----------CCCCcccEEEEeeEEec-CCceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 258 Q-----------LFDSCEDMVIEDCYISV-GDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 258 ~-----------d~~~s~nV~I~n~~i~~-gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
. .+..|++++|+||++.. .|++|-++. ++|++|+||++++
T Consensus 99 ~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~------------s~~~~v~nN~~~~ 150 (314)
T TIGR03805 99 GGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ------------SQNIVVRNNVAEE 150 (314)
T ss_pred cCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC------------CCCeEEECCEEcc
Confidence 2 46789999999999965 566887764 4556666665554
No 17
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.71 E-value=1.3e-07 Score=92.85 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=82.9
Q ss_pred ccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcC---C-CCeeeecccccEE
Q 021449 173 SFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDS---P-FWTLHPYDCKNVT 248 (312)
Q Consensus 173 ~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns---~-~~~i~i~~~~nV~ 248 (312)
.++.+.+++|+.|+| -++- |. ..| .+.+..|+|++|+|++|.++ | -.+|++..|+||+
T Consensus 139 ~~l~f~~~~nv~I~g--itl~-NS-p~w--------------~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~ 200 (456)
T PLN03003 139 TALKFRSCNNLRLSG--LTHL-DS-PMA--------------HIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVV 200 (456)
T ss_pred eEEEEEecCCcEEeC--eEEe-cC-CcE--------------EEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEE
Confidence 478889999999999 3432 11 112 47889999999999999863 3 2479999999999
Q ss_pred EEeEEEeeCCC----CCCcccEEEEeeEEecCCceEEeccCCC-c-------------------CCcc----C--CCCee
Q 021449 249 IRNAFISKIQL----FDSCEDMVIEDCYISVGDDAIAIKSGWD-Q-------------------YGIA----Y--GRPSM 298 (312)
Q Consensus 249 I~n~~I~~~~d----~~~s~nV~I~n~~i~~gDD~Iaiksg~~-~-------------------~g~~----~--g~~~~ 298 (312)
|+|+.|.+.+| -.+|+||+|+||++..|. +|+|+|-.. . .|++ . +..++
T Consensus 201 I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GH-GISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~ 279 (456)
T PLN03003 201 IQDCIIATGDDCIAINSGTSNIHISGIDCGPGH-GISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYAR 279 (456)
T ss_pred EEecEEecCCCeEEeCCCCccEEEEeeEEECCC-CeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEE
Confidence 99999999885 234566666666665543 566665211 0 1111 1 12689
Q ss_pred cEEEEeEEEeec
Q 021449 299 NILIRNLVVRSM 310 (312)
Q Consensus 299 nI~I~n~~v~~~ 310 (312)
||+++|.++.+-
T Consensus 280 nItf~nI~m~nV 291 (456)
T PLN03003 280 MITFNGITLDNV 291 (456)
T ss_pred EEEEEeEEecCc
Confidence 999999998753
No 18
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.69 E-value=2.6e-07 Score=89.90 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=79.8
Q ss_pred ccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcCC----CCeeeecccccEE
Q 021449 173 SFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSP----FWTLHPYDCKNVT 248 (312)
Q Consensus 173 ~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns~----~~~i~i~~~~nV~ 248 (312)
.+|.+.+++|+.|+| -++.- ...| .+.+..|+|++|++++|.++. ..+|++..|+||+
T Consensus 156 ~~i~f~~~~nv~i~g--itl~n--Sp~w--------------~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~ 217 (404)
T PLN02188 156 TSVKFVNMNNTVVRG--ITSVN--SKFF--------------HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVY 217 (404)
T ss_pred eEEEEEeeeeEEEeC--eEEEc--CCCe--------------EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEE
Confidence 478889999999999 44431 1122 478899999999999998632 2479999999999
Q ss_pred EEeEEEeeCCC---C-CCc------------------------------ccEEEEeeEEecCCceEEeccCCCcCCccCC
Q 021449 249 IRNAFISKIQL---F-DSC------------------------------EDMVIEDCYISVGDDAIAIKSGWDQYGIAYG 294 (312)
Q Consensus 249 I~n~~I~~~~d---~-~~s------------------------------~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~g 294 (312)
|.|++|.+.+| + .++ +||+|+||++...+.++.||+..+. ..+
T Consensus 218 I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~---~~~ 294 (404)
T PLN02188 218 ISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS---PGK 294 (404)
T ss_pred EEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC---CCc
Confidence 99999999873 1 133 3555555555444555555542110 011
Q ss_pred CCeecEEEEeEEEee
Q 021449 295 RPSMNILIRNLVVRS 309 (312)
Q Consensus 295 ~~~~nI~I~n~~v~~ 309 (312)
..++||+++|.++.+
T Consensus 295 G~v~nI~f~ni~m~~ 309 (404)
T PLN02188 295 SAATNMTFENIVMNN 309 (404)
T ss_pred eEEEEEEEEeEEecC
Confidence 258999999998875
No 19
>PLN03010 polygalacturonase
Probab=98.68 E-value=2.6e-07 Score=89.84 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=86.2
Q ss_pred cEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcCC----CCeeeecccccEEE
Q 021449 174 FIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSP----FWTLHPYDCKNVTI 249 (312)
Q Consensus 174 lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns~----~~~i~i~~~~nV~I 249 (312)
++.+.+++|++|+| -++-- . ..| .+.+..|+|++|+|+++.++. -.++++..|+||+|
T Consensus 159 ~l~~~~~~nv~v~g--itl~n-s-p~~--------------~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I 220 (409)
T PLN03010 159 ALHISKCDNLTING--ITSID-S-PKN--------------HISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINI 220 (409)
T ss_pred eEEEEeecCeEEee--eEEEc-C-Cce--------------EEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEE
Confidence 57888999999999 34421 1 112 478899999999999998743 24799999999999
Q ss_pred EeEEEeeCCC-------------------------C---------CCcccEEEEeeEEecCCceEEeccCCCcCCccCCC
Q 021449 250 RNAFISKIQL-------------------------F---------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGR 295 (312)
Q Consensus 250 ~n~~I~~~~d-------------------------~---------~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~g~ 295 (312)
+|++|.+.+| + ..-+||+|+||++...+.++.||+..+.. .
T Consensus 221 ~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~-----G 295 (409)
T PLN03010 221 FDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQ-----G 295 (409)
T ss_pred EeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCC-----E
Confidence 9999999872 0 01368888888887777888888754322 2
Q ss_pred CeecEEEEeEEEeec
Q 021449 296 PSMNILIRNLVVRSM 310 (312)
Q Consensus 296 ~~~nI~I~n~~v~~~ 310 (312)
.++||+++|.++.+.
T Consensus 296 ~v~nItf~nI~m~~v 310 (409)
T PLN03010 296 YARNISFENITLINT 310 (409)
T ss_pred EEEEeEEEeEEEecC
Confidence 589999999998863
No 20
>PLN02155 polygalacturonase
Probab=98.62 E-value=3.9e-07 Score=88.35 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=81.9
Q ss_pred ccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcCC----CCeeeecccccEE
Q 021449 173 SFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSP----FWTLHPYDCKNVT 248 (312)
Q Consensus 173 ~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns~----~~~i~i~~~~nV~ 248 (312)
.+|.+.+++|++|.| -++. |. ..| .+.+..|+|++|++++|.++. ..++++..|+||+
T Consensus 146 ~~i~~~~~~nv~i~g--itl~-nS-p~w--------------~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~ 207 (394)
T PLN02155 146 RSISFNSAKDVIISG--VKSM-NS-QVS--------------HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVT 207 (394)
T ss_pred cceeEEEeeeEEEEC--eEEE-cC-CCe--------------EEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEE
Confidence 368889999999999 4442 11 112 478899999999999998743 2479999999999
Q ss_pred EEeEEEeeCCC---C-CCcccEEEEeeEEecCCceEEeccCC-C--c-----------------CCcc-------CCCCe
Q 021449 249 IRNAFISKIQL---F-DSCEDMVIEDCYISVGDDAIAIKSGW-D--Q-----------------YGIA-------YGRPS 297 (312)
Q Consensus 249 I~n~~I~~~~d---~-~~s~nV~I~n~~i~~gDD~Iaiksg~-~--~-----------------~g~~-------~g~~~ 297 (312)
|+|++|.+.+| + .+|+||+|+||.+..|. +|+|+|-. . . .|++ -+..+
T Consensus 208 I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v 286 (394)
T PLN02155 208 FTGSTVQTGDDCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFV 286 (394)
T ss_pred EEeeEEecCCceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEE
Confidence 99999999884 1 23556666666655443 45555520 0 0 1111 12368
Q ss_pred ecEEEEeEEEeec
Q 021449 298 MNILIRNLVVRSM 310 (312)
Q Consensus 298 ~nI~I~n~~v~~~ 310 (312)
+||+++|.++.+-
T Consensus 287 ~nI~f~ni~m~~v 299 (394)
T PLN02155 287 RNVFFQDLVMKNV 299 (394)
T ss_pred EEEEEEeEEEcCc
Confidence 9999999988753
No 21
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=3.3e-07 Score=91.42 Aligned_cols=113 Identities=21% Similarity=0.409 Sum_probs=88.7
Q ss_pred cccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcCCC---CeeeecccccEE
Q 021449 172 GSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPF---WTLHPYDCKNVT 248 (312)
Q Consensus 172 ~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns~~---~~i~i~~~~nV~ 248 (312)
..++...++.||.++|. .|. + ..+| .+.+..|+|++++|+++.+... -++.+..|+||.
T Consensus 238 p~~~~l~~c~NV~~~g~--~i~-n-s~~~--------------~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~Nvl 299 (542)
T COG5434 238 PRTVVLKGCRNVLLEGL--NIK-N-SPLW--------------TVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVL 299 (542)
T ss_pred CceEEEeccceEEEeee--Eec-C-CCcE--------------EEeeecccCceecceEEECCCCCCCCccccccceeEE
Confidence 45677888999999992 322 1 1223 4788999999999999976433 479999999999
Q ss_pred EEeEEEeeCCC---------------CCCcccEEEEeeEEecCCceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 249 IRNAFISKIQL---------------FDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 249 I~n~~I~~~~d---------------~~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
|.+|+|...+| ...+++|+|.||++..|..++.+.+.. +..++||+++||.+.+
T Consensus 300 I~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~-------~ggv~ni~ved~~~~~ 368 (542)
T COG5434 300 IEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM-------GGGVQNITVEDCVMDN 368 (542)
T ss_pred EeccEEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeec-------CCceeEEEEEeeeecc
Confidence 99999999762 356899999999999888888776643 3468999999998865
No 22
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.29 E-value=3.7e-05 Score=69.90 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEeCCCceeec-----cccccccceEEe
Q 021449 93 TEAFQRAVYAISKLGKKGGGQLNVPPGRWLTA-----PFNLTSHMTLFL 136 (312)
Q Consensus 93 T~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~-----~i~L~S~~tL~l 136 (312)
-+-|++|++.| ..|.+|++-||+|... ||.++++++|..
T Consensus 15 ~~Ti~~A~~~a-----~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G 58 (246)
T PF07602_consen 15 FKTITKALQAA-----QPGDTIQLAPGTYSEATGETFPIIIKPGVTLIG 58 (246)
T ss_pred HHHHHHHHHhC-----CCCCEEEECCceeccccCCcccEEecCCeEEee
Confidence 35689999987 4788999999999632 566777777654
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.13 E-value=5.2e-06 Score=75.09 Aligned_cols=53 Identities=32% Similarity=0.486 Sum_probs=31.2
Q ss_pred EeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCCCCCcccEEEEeeEEe
Q 021449 218 IMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYIS 274 (312)
Q Consensus 218 ~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d~~~s~nV~I~n~~i~ 274 (312)
+++|+|+.|+|+.+..- -.+++|+||.|+|.++.+-+.++.|+||+|.|++|+
T Consensus 133 ~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i~ 185 (277)
T PF12541_consen 133 FMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVIN 185 (277)
T ss_pred eeeccceEEeceEEeCC----EEeeceeeEEEEccEEecccccccCCceEEEcceEe
Confidence 34455555555554321 234566666666666666666666777777766664
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.97 E-value=6.1e-05 Score=62.27 Aligned_cols=87 Identities=24% Similarity=0.227 Sum_probs=47.3
Q ss_pred ceEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC----CCC-cccEEEEeeEEe-cCCceEEeccCCC
Q 021449 214 PLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL----FDS-CEDMVIEDCYIS-VGDDAIAIKSGWD 287 (312)
Q Consensus 214 ~~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d----~~~-s~nV~I~n~~i~-~gDD~Iaiksg~~ 287 (312)
..+.+....+++|++.++.+.. .++.+..+.+++|++++|....+ +.. +++++|++|+|. ++..+|.+..+.
T Consensus 46 ~gi~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~- 123 (158)
T PF13229_consen 46 YGIYVSGGSNVTISNNTISDNG-SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGS- 123 (158)
T ss_dssp TSEEEECCES-EEES-EEES-S-EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC-
T ss_pred cEEEEecCCCeEEECeEEEEcc-ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCC-
Confidence 3566666666777777776655 56666667777777777776652 334 667777777773 444566554421
Q ss_pred cCCccCCCCeecEEEEeEEEeecC
Q 021449 288 QYGIAYGRPSMNILIRNLVVRSMV 311 (312)
Q Consensus 288 ~~g~~~g~~~~nI~I~n~~v~~~~ 311 (312)
..+++|++|++.++.
T Consensus 124 ---------~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 124 ---------SPNVTIENNTISNNG 138 (158)
T ss_dssp -----------S-EEECEEEECES
T ss_pred ---------CCeEEEEEEEEEeCc
Confidence 247788888877653
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.94 E-value=2.2e-05 Score=71.11 Aligned_cols=86 Identities=16% Similarity=0.282 Sum_probs=50.4
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCCCCCcccEEEEeeEEecCC-----ceEEeccCCCcCCccC
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGD-----DAIAIKSGWDQYGIAY 293 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d~~~s~nV~I~n~~i~~gD-----D~Iaiksg~~~~g~~~ 293 (312)
..|+++.++|+++ ++-+++ ..|+|+.++|+.+.+..-++.|+||.|+|+.+.+.| .-|.|.. +--.|-..
T Consensus 115 W~c~~i~l~nv~~-~gdYf~---m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyD-S~i~GEYL 189 (277)
T PF12541_consen 115 WNCRGIKLKNVQA-NGDYFF---MNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYD-SVINGEYL 189 (277)
T ss_pred EEeCCeEEEeEEE-eceEee---eeccceEEeceEEeCCEEeeceeeEEEEccEEecccccccCCceEEEc-ceEeeeEE
Confidence 3455555555555 333332 246666666666666666889999999999999887 2222221 00112223
Q ss_pred CCCeecEEEEeEEEee
Q 021449 294 GRPSMNILIRNLVVRS 309 (312)
Q Consensus 294 g~~~~nI~I~n~~v~~ 309 (312)
|-.++||+..||++.+
T Consensus 190 gW~SkNltliNC~I~g 205 (277)
T PF12541_consen 190 GWNSKNLTLINCTIEG 205 (277)
T ss_pred EEEcCCeEEEEeEEec
Confidence 3346777777777654
No 26
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.00021 Score=65.99 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=85.3
Q ss_pred EEEeceeeEEEecc--ceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcCC-----CCeeee-ccccc
Q 021449 175 IHGQNLKDVVITGH--NGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSP-----FWTLHP-YDCKN 246 (312)
Q Consensus 175 I~~~~~~nI~I~G~--~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns~-----~~~i~i-~~~~n 246 (312)
+......|.+|.|. ++++.|- .+.+..+.||.|+||+|+..+ +-.|.+ ..+.|
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~-------------------gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~n 155 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGG-------------------GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHN 155 (345)
T ss_pred EEEeeccccEEEeeccccEEEec-------------------eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeE
Confidence 45566688888883 2344432 477888999999999999876 456777 78999
Q ss_pred EEEEeEEEeeCC------------CC-CCcccEEEEeeEEecCCceEEeccCCCcCCccCCCCeecEEEEeEEEeecCC
Q 021449 247 VTIRNAFISKIQ------------LF-DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSMVR 312 (312)
Q Consensus 247 V~I~n~~I~~~~------------d~-~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~~~~ 312 (312)
+-|++|++.... |+ ..+..|+|.+|+|...|-..-+++...+. +...-.+|++.+|++++..+
T Consensus 156 IWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~---~~~~~~kvT~hhNyFkn~~q 231 (345)
T COG3866 156 IWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSN---YDDGKYKVTIHHNYFKNLYQ 231 (345)
T ss_pred EEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCccc---ccCCceeEEEeccccccccc
Confidence 999999999843 22 35679999999999888877776543321 00134679999999988754
No 27
>smart00656 Amb_all Amb_all domain.
Probab=97.77 E-value=0.00036 Score=61.24 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=65.8
Q ss_pred eEEEeccccEEEEeeEEEcCCC------CeeeecccccEEEEeEEEeeC---------CC-----CCCcccEEEEeeEEe
Q 021449 215 LVQIMWSSDILISNITLRDSPF------WTLHPYDCKNVTIRNAFISKI---------QL-----FDSCEDMVIEDCYIS 274 (312)
Q Consensus 215 ~i~~~~~~nv~I~nvti~ns~~------~~i~i~~~~nV~I~n~~I~~~---------~d-----~~~s~nV~I~n~~i~ 274 (312)
.+.+..++||.|++|+|++... .+|.+..+++|.|+.|++... .| ...+.+|+|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 4777779999999999998533 578889999999999999997 22 235789999999998
Q ss_pred cCCceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 275 VGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 275 ~gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
..+-+.-+.++..... . ...+|++.+|++.+
T Consensus 113 ~h~~~~liG~~d~~~~---~-~~~~vT~h~N~~~~ 143 (190)
T smart00656 113 NHWKVMLLGHSDSDTD---D-GKMRVTIAHNYFGN 143 (190)
T ss_pred cCCEEEEEccCCCccc---c-ccceEEEECcEEcC
Confidence 7666666665432110 0 02356666666654
No 28
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.69 E-value=0.00024 Score=62.86 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=64.0
Q ss_pred EEE-eccccEEEEeeEEEc---------------CCCCeeeecccccEEEEeEEEeeC--------CC----C-CCcccE
Q 021449 216 VQI-MWSSDILISNITLRD---------------SPFWTLHPYDCKNVTIRNAFISKI--------QL----F-DSCEDM 266 (312)
Q Consensus 216 i~~-~~~~nv~I~nvti~n---------------s~~~~i~i~~~~nV~I~n~~I~~~--------~d----~-~~s~nV 266 (312)
+.+ ..++||.|+|++|++ ...-.+.+..++||.|+.|++... .| . ..+.+|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 444 489999999999998 244568889999999999999998 43 2 468899
Q ss_pred EEEeeEEecCCceEEeccCCCcCCccCCCCeecEEEEeEEEeecC
Q 021449 267 VIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSMV 311 (312)
Q Consensus 267 ~I~n~~i~~gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~~~ 311 (312)
+|.+|.|...+.+..+++. +.. .... . .+|++-+|.+.++.
T Consensus 119 TiS~n~f~~~~k~~l~G~~-d~~-~~~~-~-~~vT~hhN~f~~~~ 159 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSS-DSN-STDR-G-LRVTFHHNYFANTN 159 (200)
T ss_dssp EEES-EEEEEEETCEESSC-TTC-GGGT-T-EEEEEES-EEEEEE
T ss_pred EEEchhccccccccccCCC-CCc-cccC-C-ceEEEEeEEECchh
Confidence 9999999877766666552 222 1112 2 88888888886653
No 29
>PLN02480 Probable pectinesterase
Probab=97.61 E-value=0.0015 Score=62.41 Aligned_cols=178 Identities=11% Similarity=0.042 Sum_probs=95.8
Q ss_pred chHHHHHHHHHHHHhhccCCCcEEEeCCCceeecccccc---ccceEEecC-CceEEEeecCCCCCCCCCCCCCCCCCcC
Q 021449 91 LNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT---SHMTLFLAD-DAEILAIENEKYWPLMPPLPSYGYGREH 166 (312)
Q Consensus 91 ddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~---S~~tL~l~~-ga~i~~~~d~~~~~~~~~~~~~~~G~~~ 166 (312)
.|-.-||+||+++.. ....--+|+|.+|+|. ..+.++ .+++|..+. +.+++...+... .+
T Consensus 58 g~f~TIQ~AIdaap~-~~~~~~~I~Ik~GvY~-E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~----~~---------- 121 (343)
T PLN02480 58 GDFTSVQSAIDAVPV-GNSEWIIVHLRKGVYR-EKVHIPENKPFIFMRGNGKGRTSIVWSQSSS----DN---------- 121 (343)
T ss_pred CCcccHHHHHhhCcc-CCCceEEEEEcCcEEE-EEEEECCCCceEEEEecCCCCeEEEcccccc----CC----------
Confidence 357789999999831 0111225889999997 455563 456665432 123332111100 00
Q ss_pred CCCCccccEEEeceeeEEEeccceEEecC---CchhhhHhhhcccCCCCCceEEE-eccccEEEEeeEEEcCCCCeeeec
Q 021449 167 HGPRFGSFIHGQNLKDVVITGHNGTINGQ---GQAWWKKYRQKLLNNTRGPLVQI-MWSSDILISNITLRDSPFWTLHPY 242 (312)
Q Consensus 167 ~~~~~~~lI~~~~~~nI~I~G~~G~IdG~---G~~ww~~~~~~~~~~~r~~~i~~-~~~~nv~I~nvti~ns~~~~i~i~ 242 (312)
..++.+... .+++++++ -+|... |. .......++.+ ..++++.+++++|..-. .++. .
T Consensus 122 ---~~saTvtV~-a~~f~a~n--LTf~Nta~~g~----------~~~~~~QAVAl~v~gDra~f~~c~f~G~Q-DTLy-~ 183 (343)
T PLN02480 122 ---AASATFTVE-APHFVAFG--ISIRNDAPTGM----------AFTSENQSVAAFVGADKVAFYHCAFYSTH-NTLF-D 183 (343)
T ss_pred ---CCceEEEEE-CCCEEEEe--eEEEecCCCCC----------CCCCCCceEEEEecCCcEEEEeeEEeccc-ceeE-e
Confidence 001222222 24555555 333321 11 00111234444 56889999999986533 2333 2
Q ss_pred ccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCCc-------eEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 243 DCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGDD-------AIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 243 ~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gDD-------~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
....--+++|.|.+.-| +.+.....++||+|.+-.+ .|.-.+-.. ....-.++.||++..
T Consensus 184 ~~gR~yf~~C~IeG~VDFIFG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~-------~~~~GfvF~~C~i~g 251 (343)
T PLN02480 184 YKGRHYYHSCYIQGSIDFIFGRGRSIFHNCEIFVIADRRVKIYGSITAHNRES-------EDNSGFVFIKGKVYG 251 (343)
T ss_pred CCCCEEEEeCEEEeeeeEEccceeEEEEccEEEEecCCCCCCceEEEcCCCCC-------CCCCEEEEECCEEcc
Confidence 34456789999998877 4677899999999965321 232222111 112457899999864
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.61 E-value=0.002 Score=57.89 Aligned_cols=66 Identities=30% Similarity=0.270 Sum_probs=33.1
Q ss_pred eEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC---CCCCcccEEEEeeEEecC-CceEE
Q 021449 215 LVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ---LFDSCEDMVIEDCYISVG-DDAIA 281 (312)
Q Consensus 215 ~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~---d~~~s~nV~I~n~~i~~g-DD~Ia 281 (312)
.+.+..+.+.+|++-++.+... +|.+..+.+.+|.+.+|.... .+..+.+.+|+++.|... +-+|.
T Consensus 81 Gi~l~~s~~~~I~~N~i~~n~~-GI~l~~s~~~~I~~N~i~~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 81 GIYLMGSSNNTISNNTISNNGY-GIYLYGSSNNTISNNTISNNGYGIYLSSSSNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CEEEEcCCCcEEECCEecCCCc-eEEEeeCCceEEECcEEeCCCEEEEEEeCCCCEEECeEEeCCCccceE
Confidence 3455555544555555555444 555555555555555554222 233445555555555333 44454
No 31
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.57 E-value=0.00024 Score=58.62 Aligned_cols=85 Identities=28% Similarity=0.284 Sum_probs=38.6
Q ss_pred eEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC---CCCCcccEEEEeeEE-ecCCceEEeccCCCcCC
Q 021449 215 LVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ---LFDSCEDMVIEDCYI-SVGDDAIAIKSGWDQYG 290 (312)
Q Consensus 215 ~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~---d~~~s~nV~I~n~~i-~~gDD~Iaiksg~~~~g 290 (312)
.|.+..+..++|++.+|.+ ...++.+....+++++++++.... .+..+.+++|++|.| .+++.+|.+..
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~------ 97 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNGSGIYVSGSSNITIENNRIENNGDYGIYISN------ 97 (158)
T ss_dssp CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-SEEEECCS-CS-EEES-EEECSSS-SCE-TC------
T ss_pred EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEccceEEEEecCCceecCcEEEcCCCccEEEec------
Confidence 3444444444444444444 334444444444444444444433 234555666666665 33444554442
Q ss_pred ccCCCCeecEEEEeEEEeecC
Q 021449 291 IAYGRPSMNILIRNLVVRSMV 311 (312)
Q Consensus 291 ~~~g~~~~nI~I~n~~v~~~~ 311 (312)
+..+++|++|++.++.
T Consensus 98 -----~~~~~~i~~n~~~~~~ 113 (158)
T PF13229_consen 98 -----SSSNVTIENNTIHNNG 113 (158)
T ss_dssp -----EECS-EEES-EEECCT
T ss_pred -----cCCCEEEEeEEEEeCc
Confidence 2678999999998764
No 32
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.49 E-value=0.0013 Score=64.22 Aligned_cols=107 Identities=22% Similarity=0.176 Sum_probs=69.7
Q ss_pred cccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEe
Q 021449 172 GSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN 251 (312)
Q Consensus 172 ~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n 251 (312)
.++|+..++++++|++ -+|.+++. ..|.+..|+ .+|++-++.......|++.++.++.|++
T Consensus 135 dAgI~v~~a~~v~Ied--n~L~gsg~----------------FGI~L~~~~-~~I~~N~I~g~~~~~I~lw~S~g~~V~~ 195 (455)
T TIGR03808 135 RGLIHCQGGRDVRITD--CEITGSGG----------------NGIWLETVS-GDISGNTITQIAVTAIVSFDALGLIVAR 195 (455)
T ss_pred CCEEEEccCCceEEEe--eEEEcCCc----------------ceEEEEcCc-ceEecceEeccccceEEEeccCCCEEEC
Confidence 3578889999999999 57776631 135555555 4444444444444445555666666655
Q ss_pred EEEeeCC----------------------------------------CCCCcccEEEEeeEEecCC-ceEEeccCCCcCC
Q 021449 252 AFISKIQ----------------------------------------LFDSCEDMVIEDCYISVGD-DAIAIKSGWDQYG 290 (312)
Q Consensus 252 ~~I~~~~----------------------------------------d~~~s~nV~I~n~~i~~gD-D~Iaiksg~~~~g 290 (312)
.+|.... +.+.+.+++|+++.|+..+ |+|-+.+
T Consensus 196 N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ns------ 269 (455)
T TIGR03808 196 NTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNS------ 269 (455)
T ss_pred CEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEc------
Confidence 5555533 2456789999999999888 9997765
Q ss_pred ccCCCCeecEEEEeEEEee
Q 021449 291 IAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 291 ~~~g~~~~nI~I~n~~v~~ 309 (312)
++|+.|+++++.+
T Consensus 270 ------ss~~~i~~N~~~~ 282 (455)
T TIGR03808 270 ------ASNIQITGNSVSD 282 (455)
T ss_pred ------ccCcEEECcEeee
Confidence 4566666666553
No 33
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.37 E-value=0.002 Score=57.94 Aligned_cols=93 Identities=24% Similarity=0.225 Sum_probs=48.7
Q ss_pred EEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC---CCCCcccEEEEeeEEecCCceEEeccCCCc----
Q 021449 216 VQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ---LFDSCEDMVIEDCYISVGDDAIAIKSGWDQ---- 288 (312)
Q Consensus 216 i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~---d~~~s~nV~I~n~~i~~gDD~Iaiksg~~~---- 288 (312)
+.+..+.+++|++.++.+. ..++++..|++++|+++++.... .+..+.+.+|+++.|.....+|.+....+.
T Consensus 38 i~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~s~~~~I~~ 116 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNNGYGIYLMGSSNNTISNNTISNNGYGIYLYGSSNNTISN 116 (236)
T ss_pred EEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEccCCCEEEEcCCCcEEECCEecCCCceEEEeeCCceEEEC
Confidence 4555666666666666555 45566666666666666666544 233344445555555433335555432211
Q ss_pred -------CCccCCCCeecEEEEeEEEeec
Q 021449 289 -------YGIAYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 289 -------~g~~~g~~~~nI~I~n~~v~~~ 310 (312)
+|+... ...+.+|+++++.++
T Consensus 117 N~i~~~~~GI~l~-~s~~n~I~~N~i~~n 144 (236)
T PF05048_consen 117 NTISNNGYGIYLS-SSSNNTITGNTISNN 144 (236)
T ss_pred cEEeCCCEEEEEE-eCCCCEEECeEEeCC
Confidence 111111 236677777777665
No 34
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.30 E-value=0.0044 Score=60.37 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL 128 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L 128 (312)
+.++||+||++| .+|.+|+++.|+|.-..|.+
T Consensus 3 s~~~lq~Ai~~a-----~pGD~I~L~~Gty~~~~i~~ 34 (425)
T PF14592_consen 3 SVAELQSAIDNA-----KPGDTIVLADGTYKDVEIVF 34 (425)
T ss_dssp SHHHHHHHHHH-------TT-EEEE-SEEEET-EEEE
T ss_pred CHHHHHHHHHhC-----CCCCEEEECCceeecceEEE
Confidence 568999999987 48999999999997433443
No 35
>PLN02304 probable pectinesterase
Probab=97.17 E-value=0.01 Score=57.18 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc---cccceEEec-CCceEEEeecCCCCCCCCCCCCCCCCCcCC
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL---TSHMTLFLA-DDAEILAIENEKYWPLMPPLPSYGYGREHH 167 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l~-~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~ 167 (312)
|-.-||+||+++.+ ....--+|+|.+|+|.-. +.+ +.+++|..+ .+.|++.-.+...- ..|.
T Consensus 86 df~TIQ~AIdavP~-~~~~r~vI~Ik~GvY~Ek-V~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~---------~~gT--- 151 (379)
T PLN02304 86 NFTTVQSAVDAVGN-FSQKRNVIWINSGIYYEK-VTVPKTKPNITFQGQGFDSTAIAWNDTAKS---------ANGT--- 151 (379)
T ss_pred CccCHHHHHhhCcc-cCCCcEEEEEeCeEeEEE-EEECCCCCcEEEEecCCCCcEEEccCcccC---------CCCc---
Confidence 35689999999842 122345799999999633 334 467777653 12344332221100 0010
Q ss_pred CCCccc--cEEEe--ceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEE-EeccccEEEEeeEEEcCCCCeeeec
Q 021449 168 GPRFGS--FIHGQ--NLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQ-IMWSSDILISNITLRDSPFWTLHPY 242 (312)
Q Consensus 168 ~~~~~~--lI~~~--~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~-~~~~~nv~I~nvti~ns~~~~i~i~ 242 (312)
..++ .+.+. -++||+|+.. --....| .....++. ....+...+.++.|.... .++..
T Consensus 152 --~~SaTv~v~a~~F~a~nITf~Nt-a~~~~~g-------------~~~~QAVAL~v~gDra~fy~C~f~G~Q-DTLy~- 213 (379)
T PLN02304 152 --FYSASVQVFASNFIAKNISFMNV-APIPKPG-------------DVGAQAVAIRIAGDQAAFWGCGFFGAQ-DTLHD- 213 (379)
T ss_pred --cceEEEEEECCCeEEEeeEEEec-CCCCCCC-------------CCCccEEEEEecCCcEEEEeceEeccc-ceeEe-
Confidence 0011 12221 2456666541 0001111 01122333 345888889999887543 23332
Q ss_pred ccccEEEEeEEEeeCCCC-CCcccEEEEeeEEecCCceEEeccCCCcCC-c-cCC----CCeecEEEEeEEEee
Q 021449 243 DCKNVTIRNAFISKIQLF-DSCEDMVIEDCYISVGDDAIAIKSGWDQYG-I-AYG----RPSMNILIRNLVVRS 309 (312)
Q Consensus 243 ~~~nV~I~n~~I~~~~d~-~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g-~-~~g----~~~~nI~I~n~~v~~ 309 (312)
....--+++|.|.+.-|+ .+.....+++|.|.+-.+.+..+.. ...| + ..+ ....-.++.||++..
T Consensus 214 ~~gR~Yf~~CyIeG~VDFIFG~g~A~Fe~C~I~s~~~~~~~g~~-~~~G~ITA~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 214 DRGRHYFKDCYIQGSIDFIFGDARSLYENCRLISMANPVPPGSK-SINGAVTAHGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred CCCCEEEEeeEEcccccEEeccceEEEEccEEEEecCCcccccc-cCceEEEecCCCCCCCCceEEEECCEEcc
Confidence 334567899999888774 5668889999999653321111000 0000 0 001 123578999999864
No 36
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.99 E-value=0.021 Score=58.05 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=50.2
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~ 291 (312)
..++...+.+++|.... .++.. +...--+++|.|.+.-| +.+...+.++||.|.... ..|.-.+-.+.
T Consensus 365 v~~D~~~fy~C~~~G~Q-DTLy~-~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~--- 439 (566)
T PLN02713 365 SGADLSTFYSCSFEAYQ-DTLYT-HSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMQGQFNTITAQGRTDP--- 439 (566)
T ss_pred ecCCcEEEEeeeeccCC-cceEE-CCCCEEEEeeEEecccceecccceEEEeccEEEEecCCCCCcceeeecCCCCC---
Confidence 35677777777775432 23322 23456788888888776 467789999999995431 12222111110
Q ss_pred cCCCCeecEEEEeEEEeec
Q 021449 292 AYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~~ 310 (312)
....-++|.||+|...
T Consensus 440 ---~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 440 ---NQNTGTSIQNCTIKAA 455 (566)
T ss_pred ---CCCCEEEEEcCEEecC
Confidence 1235699999998753
No 37
>PLN02682 pectinesterase family protein
Probab=96.98 E-value=0.023 Score=54.71 Aligned_cols=190 Identities=14% Similarity=0.050 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc---cccceEEec-CCceEEEeecCCCCCCCCCCCCCCCCCcCC
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL---TSHMTLFLA-DDAEILAIENEKYWPLMPPLPSYGYGREHH 167 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l~-~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~ 167 (312)
|-.-||+||+++.. ....--+|+|.||+|.-. +.+ +.+++|..+ .+.|++.-.+...-+. + .|.. .
T Consensus 81 df~TIQ~AIdavP~-~~~~r~vI~Ik~G~Y~Ek-V~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~----~---~g~~-~ 150 (369)
T PLN02682 81 DFTTIQAAIDSLPV-INLVRVVIKVNAGTYREK-VNIPPLKAYITLEGAGADKTIIQWGDTADTPG----P---GGRP-L 150 (369)
T ss_pred CccCHHHHHhhccc-cCCceEEEEEeCceeeEE-EEEeccCceEEEEecCCCccEEEeccccCccC----C---CCCc-c
Confidence 45689999999842 112346899999999733 444 567777653 1234432222111000 0 0000 0
Q ss_pred CCCccccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEE-eccccEEEEeeEEEcCCCCeeeeccccc
Q 021449 168 GPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQI-MWSSDILISNITLRDSPFWTLHPYDCKN 246 (312)
Q Consensus 168 ~~~~~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~-~~~~nv~I~nvti~ns~~~~i~i~~~~n 246 (312)
+...++-+.. ..+++..++ -+|.-.- . +. . .......++.+ ..+++..+.+++|... +.++.. +...
T Consensus 151 gT~~SAT~~v-~a~~F~a~n--lTf~Nt~-~-~~--~---~g~~g~QAVAL~v~gDr~~fy~C~f~G~-QDTLy~-~~gR 218 (369)
T PLN02682 151 GTYGSATFAV-NSPYFIAKN--ITFKNTA-P-VP--P---PGALGKQAVALRISADTAAFYGCKFLGA-QDTLYD-HLGR 218 (369)
T ss_pred ccccceEEEE-ECCCeEEEe--eEEEccc-c-cC--C---CCCCcccEEEEEecCCcEEEEcceEecc-ccceEE-CCCC
Confidence 0001111211 123333333 2221100 0 00 0 00011233333 4578888888888654 233322 3345
Q ss_pred EEEEeEEEeeCCC-CCCcccEEEEeeEEecCC---ceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 247 VTIRNAFISKIQL-FDSCEDMVIEDCYISVGD---DAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 247 V~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD---D~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
--+++|.|.+.-| +.+.....+++|+|.+-. ..|.-.+.... ....-.++.||+|..
T Consensus 219 qyf~~C~IeG~VDFIFG~g~a~Fe~C~I~s~~~~~G~ITA~~r~~~------~~~~GfvF~~C~itg 279 (369)
T PLN02682 219 HYFKDCYIEGSVDFIFGNGLSLYEGCHLHAIARNFGALTAQKRQSV------LEDTGFSFVNCKVTG 279 (369)
T ss_pred EEEEeeEEcccccEEecCceEEEEccEEEEecCCCeEEecCCCCCC------CCCceEEEEeeEecC
Confidence 6788888888876 366789999999996422 23322221110 013468899999864
No 38
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.031 Score=56.15 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc---cccceEEec-CCceEEEeecCCCCCCCCCCCCCCCCCcCC
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL---TSHMTLFLA-DDAEILAIENEKYWPLMPPLPSYGYGREHH 167 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l~-~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~ 167 (312)
|-.-||+||+++.......--+|+|.+|+|.-. +.+ +.+++|..+ .+.|++...+.. ..|....
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E~-V~I~~~k~nItl~G~g~~~TiIt~~~~~-----------~~g~~T~ 303 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYHEN-LNIPTKQKNVMLVGDGKGKTVIVGSRSN-----------RGGWTTY 303 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeEEE-EecCCCCceEEEEEcCCCCeEEEeCCcC-----------CCCCccc
Confidence 467899999975211122346899999999733 334 356777653 123444221110 0010000
Q ss_pred CCCccccEEEec--eeeEEEeccceEEecCCchhhhHhhhcccCCCCCceE-EEeccccEEEEeeEEEcCCCCeeeeccc
Q 021449 168 GPRFGSFIHGQN--LKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLV-QIMWSSDILISNITLRDSPFWTLHPYDC 244 (312)
Q Consensus 168 ~~~~~~lI~~~~--~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i-~~~~~~nv~I~nvti~ns~~~~i~i~~~ 244 (312)
. -....+.+.+ ++||+|+.. -|. ....++ ....++...+.+++|..-. .++. .+.
T Consensus 304 ~-SaTv~v~~~~F~a~nitf~Nt------ag~-------------~~~QAVALrv~gDr~~fy~C~f~GyQ-DTLy-~~~ 361 (529)
T PLN02170 304 Q-TATVAAMGDGFIARDITFVNS------AGP-------------NSEQAVALRVGSDKSVVYRCSVEGYQ-DSLY-THS 361 (529)
T ss_pred c-ceEEEEEcCCeEEEeeEEEec------CCC-------------CCCceEEEEecCCcEEEEeeeEeccC-Ccce-eCC
Confidence 0 0011122222 355555441 010 011223 2245788888888886432 2332 234
Q ss_pred ccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC-----ceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 245 KNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD-----DAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 245 ~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD-----D~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
..--+++|.|.+.-| +.+.....++||.|..-. ..|.-. +... .....-++|.||+|..
T Consensus 362 ~Rqyy~~C~I~GtVDFIFG~a~avFq~C~I~~~~~~~~~g~ITAq-~R~~-----~~~~~Gfvf~~C~it~ 426 (529)
T PLN02170 362 KRQFYRETDITGTVDFIFGNSAVVFQSCNIAARKPSGDRNYVTAQ-GRSD-----PNQNTGISIHNCRITA 426 (529)
T ss_pred CCEEEEeeEEccccceecccceEEEeccEEEEecCCCCceEEEec-CCCC-----CCCCceEEEEeeEEec
Confidence 456788888888876 356678999999995432 122221 1110 0123568999999865
No 39
>PLN02773 pectinesterase
Probab=96.96 E-value=0.031 Score=52.90 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=45.6
Q ss_pred ccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCCC-CCcccEEEEeeEEecCCceEEeccCCCcCCccCCCCee
Q 021449 220 WSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLF-DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSM 298 (312)
Q Consensus 220 ~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d~-~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~g~~~~ 298 (312)
.++.+.+.+++|... +.++... -..--+++|.|.+.-|+ .+...+.+++|+|.+..++.-.-.+.... ....
T Consensus 128 ~gDr~~f~~c~~~G~-QDTL~~~-~gr~yf~~c~IeG~VDFIFG~g~a~Fe~c~i~s~~~g~ITA~~r~~~-----~~~~ 200 (317)
T PLN02773 128 TADRCAFYNCRFLGW-QDTLYLH-YGKQYLRDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSS-----QEST 200 (317)
T ss_pred cCccEEEEccEeecc-cceeEeC-CCCEEEEeeEEeecccEEeeccEEEEEeeEEEEccCcEEECCCCCCC-----CCCc
Confidence 356666666666532 2333322 23455677777776663 56677899999996543332111111110 0124
Q ss_pred cEEEEeEEEee
Q 021449 299 NILIRNLVVRS 309 (312)
Q Consensus 299 nI~I~n~~v~~ 309 (312)
-.++.||+|..
T Consensus 201 GfvF~~c~it~ 211 (317)
T PLN02773 201 GYVFLRCVITG 211 (317)
T ss_pred eEEEEccEEec
Confidence 57899999875
No 40
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.94 E-value=0.029 Score=56.67 Aligned_cols=83 Identities=16% Similarity=0.051 Sum_probs=51.5
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~ 291 (312)
..++++.+.++.|..- +.++.. +...--+++|.|.+.-| +.+...+.++||.|.+-. ..|.-. +...
T Consensus 344 v~~D~~~fy~C~~~G~-QDTLy~-~~~rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~r~~~~~~~~~iTA~-~r~~--- 417 (537)
T PLN02506 344 VDSDQSAFYRCSMEGY-QDTLYA-HSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQ-GRKS--- 417 (537)
T ss_pred ecCCcEEEEcceeecc-ccccee-cCCceEEEeeEEecccceEccCceeEEeccEEEEccCCCCCCceEEcc-CCCC---
Confidence 4577888888887543 223332 33456788888888876 356688999999995431 233222 2111
Q ss_pred cCCCCeecEEEEeEEEee
Q 021449 292 AYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~ 309 (312)
.....-++|.||++..
T Consensus 418 --~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 418 --PHQSTGFSIQDSYVLA 433 (537)
T ss_pred --CCCCcEEEEEcCEEcc
Confidence 0123578999999865
No 41
>PLN02497 probable pectinesterase
Probab=96.89 E-value=0.053 Score=51.53 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=53.1
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC--------ceEEeccCCCcC
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD--------DAIAIKSGWDQY 289 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD--------D~Iaiksg~~~~ 289 (312)
...+...+.++.|... +.++. .....--+++|.|.+.-| +.+.....++||+|.+-. ..|.--+-...
T Consensus 147 v~gDr~~fy~C~f~G~-QDTLy-~~~gRqyf~~C~IeG~VDFIFG~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~- 223 (331)
T PLN02497 147 IGGDKSAFYSCGFAGV-QDTLW-DSDGRHYFKRCTIQGAVDFIFGSGQSIYESCVIQVLGGQLEPGLAGFITAQGRTNP- 223 (331)
T ss_pred ecCCcEEEEeeEEecc-cccee-eCCCcEEEEeCEEEecccEEccCceEEEEccEEEEecCcCCCCCceEEEecCCCCC-
Confidence 4688889999998763 23343 234556789999999887 356678999999996532 12222111110
Q ss_pred CccCCCCeecEEEEeEEEee
Q 021449 290 GIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 290 g~~~g~~~~nI~I~n~~v~~ 309 (312)
....-.++.||++..
T Consensus 224 -----~~~~GfvF~~C~itg 238 (331)
T PLN02497 224 -----YDANGFVFKNCLVYG 238 (331)
T ss_pred -----CCCceEEEEccEEcc
Confidence 112467999999864
No 42
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.88 E-value=0.035 Score=56.19 Aligned_cols=175 Identities=14% Similarity=0.097 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc---cccceEEec-CCceEEEeecCCCCCCCCCCCCCCCCCcCC
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL---TSHMTLFLA-DDAEILAIENEKYWPLMPPLPSYGYGREHH 167 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l~-~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~ 167 (312)
|-.-||+||+++.+ .....-+|+|.+|+|.- .+.+ +.+++|..+ .+.|++...+. . ..|...
T Consensus 241 ~f~TIq~Ai~a~p~-~~~~r~vI~Ik~GvY~E-~V~i~~~k~~i~l~G~g~~~TiIt~~~~--~---------~~g~~T- 306 (541)
T PLN02416 241 NFSTITDAINFAPN-NSNDRIIIYVREGVYEE-NVEIPIYKTNIVLIGDGSDVTFITGNRS--V---------VDGWTT- 306 (541)
T ss_pred CccCHHHHHHhhhh-cCCceEEEEEeCceeEE-EEecCCCCccEEEEecCCCceEEeCCCc--c---------CCCCCc-
Confidence 46689999999853 12234578999999963 3334 356666543 12344432111 0 001000
Q ss_pred CCCccccEEEec----eeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEE-eccccEEEEeeEEEcCCCCeeeec
Q 021449 168 GPRFGSFIHGQN----LKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQI-MWSSDILISNITLRDSPFWTLHPY 242 (312)
Q Consensus 168 ~~~~~~lI~~~~----~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~-~~~~nv~I~nvti~ns~~~~i~i~ 242 (312)
..++-+...+ ++||+|+.. -| ....+++.+ ..++.+.+.+++|.... .++. .
T Consensus 307 --~~saT~~v~~~~F~a~nitf~Nt------ag-------------~~~~QAVAl~v~~D~~~fy~c~~~G~Q-DTLy-~ 363 (541)
T PLN02416 307 --FRSATLAVSGEGFLARDITIENT------AG-------------PEKHQAVALRVNADLVALYRCTINGYQ-DTLY-V 363 (541)
T ss_pred --cceEEEEEECCCeEEEeeEEEEC------CC-------------CCCCceEEEEEcCccEEEEcceEeccc-chhc-c
Confidence 0012122222 345555441 00 001123322 35777888888775432 2222 2
Q ss_pred ccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCCc------eEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 243 DCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGDD------AIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 243 ~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gDD------~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+...--+++|.|.+.-| +.+...+.++||.|..... .|.-. +.. ......-++|.||+|..
T Consensus 364 ~~~Rqyy~~C~I~GtVDFIFG~a~avfq~c~i~~~~~~~~~~~~iTA~-~r~-----~~~~~~G~vf~~c~i~~ 431 (541)
T PLN02416 364 HSFRQFYRECDIYGTIDYIFGNAAVVFQACNIVSKMPMPGQFTVITAQ-SRD-----TPDEDTGISIQNCSILA 431 (541)
T ss_pred CCCceEEEeeEEeeccceeeccceEEEeccEEEEecCCCCCceEEECC-CCC-----CCCCCCEEEEEeeEEec
Confidence 34556788888888876 4677889999999965321 11111 110 01123579999999864
No 43
>smart00656 Amb_all Amb_all domain.
Probab=96.87 E-value=0.004 Score=54.66 Aligned_cols=62 Identities=27% Similarity=0.232 Sum_probs=47.7
Q ss_pred CeeeecccccEEEEeEEEeeCC-------C---CCCcccEEEEeeEEecC----------CceEEeccCCCcCCccCCCC
Q 021449 237 WTLHPYDCKNVTIRNAFISKIQ-------L---FDSCEDMVIEDCYISVG----------DDAIAIKSGWDQYGIAYGRP 296 (312)
Q Consensus 237 ~~i~i~~~~nV~I~n~~I~~~~-------d---~~~s~nV~I~n~~i~~g----------DD~Iaiksg~~~~g~~~g~~ 296 (312)
.++.+..++||.|+|++|.... | +..+++|.|+.|.|..+ |..+.++. .
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~-----------~ 100 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKN-----------G 100 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECc-----------c
Confidence 4556666889999999999864 2 35689999999999765 44455554 4
Q ss_pred eecEEEEeEEEee
Q 021449 297 SMNILIRNLVVRS 309 (312)
Q Consensus 297 ~~nI~I~n~~v~~ 309 (312)
+.+|+|++|++.+
T Consensus 101 s~~vTvs~~~f~~ 113 (190)
T smart00656 101 STYVTISNNYFHN 113 (190)
T ss_pred cccEEEECceEec
Confidence 6899999999854
No 44
>PLN02432 putative pectinesterase
Probab=96.83 E-value=0.039 Score=51.65 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=51.9
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCCC-CCcccEEEEeeEEecCC---ceEEeccCCCcCCccCC
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLF-DSCEDMVIEDCYISVGD---DAIAIKSGWDQYGIAYG 294 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d~-~~s~nV~I~n~~i~~gD---D~Iaiksg~~~~g~~~g 294 (312)
...+...+.++.|... +.++.. +...--++||.|.+.-|+ .+.....+++|+|.+-. ..|.-.+.... .
T Consensus 118 v~gDr~~f~~c~~~G~-QDTLy~-~~gr~yf~~c~I~G~VDFIFG~g~a~Fe~c~i~s~~~~~g~itA~~r~~~-~---- 190 (293)
T PLN02432 118 VAGDRAAFYGCRILSY-QDTLLD-DTGRHYYRNCYIEGATDFICGNAASLFEKCHLHSLSPNNGAITAQQRTSA-S---- 190 (293)
T ss_pred EcCCcEEEEcceEecc-cceeEE-CCCCEEEEeCEEEecccEEecCceEEEEeeEEEEecCCCCeEEecCCCCC-C----
Confidence 4578888888888743 334433 234567889999888773 56678999999996422 23322211110 0
Q ss_pred CCeecEEEEeEEEee
Q 021449 295 RPSMNILIRNLVVRS 309 (312)
Q Consensus 295 ~~~~nI~I~n~~v~~ 309 (312)
...-.++.||+|..
T Consensus 191 -~~~Gfvf~~c~itg 204 (293)
T PLN02432 191 -ENTGFTFLGCKLTG 204 (293)
T ss_pred -CCceEEEEeeEEcc
Confidence 12458999999864
No 45
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.83 E-value=0.04 Score=55.42 Aligned_cols=175 Identities=14% Similarity=0.088 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeecccccc---ccceEEec-CCceEEEeecCCCCCCCCCCCCCCCCCcCC
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT---SHMTLFLA-DDAEILAIENEKYWPLMPPLPSYGYGREHH 167 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~---S~~tL~l~-~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~ 167 (312)
|-.-||+||+++.+ .....-+|+|.+|+|.- .+.++ .+++|..+ .+.|++...+. .. .|...
T Consensus 217 ~f~TIq~Ai~a~P~-~~~~r~vI~Ik~GvY~E-~V~I~~~k~~i~l~G~g~~~TiIt~~~~--~~---------~g~~T- 282 (520)
T PLN02201 217 NFTTIMDAVLAAPD-YSTKRYVIYIKKGVYLE-NVEIKKKKWNIMMVGDGIDATVITGNRS--FI---------DGWTT- 282 (520)
T ss_pred CccCHHHHHHhchh-cCCCcEEEEEeCceeEE-EEEecCCCceEEEEecCCCCcEEEeCCc--cC---------CCCcc-
Confidence 46789999999853 12235689999999973 34443 35666543 12344422111 00 01000
Q ss_pred CCCccccEEEe----ceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEE-eccccEEEEeeEEEcCCCCeeeec
Q 021449 168 GPRFGSFIHGQ----NLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQI-MWSSDILISNITLRDSPFWTLHPY 242 (312)
Q Consensus 168 ~~~~~~lI~~~----~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~-~~~~nv~I~nvti~ns~~~~i~i~ 242 (312)
..++-+... -++||+|+.. . |. ....++.+ ..++...+.++.|..- +.++..
T Consensus 283 --~~SAT~~v~~~~F~a~nitf~Nt---a-g~---------------~~~QAVAlrv~~D~~~fy~C~f~G~-QDTLy~- 339 (520)
T PLN02201 283 --FRSATFAVSGRGFIARDITFQNT---A-GP---------------EKHQAVALRSDSDLSVFYRCAMRGY-QDTLYT- 339 (520)
T ss_pred --cceEEEEEECCCeEEEeeEEEEC---C-CC---------------CCCceEEEEEcCCcEEEEeeeeecc-CCeeEe-
Confidence 001111111 1355555441 0 00 01123333 3477788888887643 233332
Q ss_pred ccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecC------CceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 243 DCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVG------DDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 243 ~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~g------DD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+...--+++|.|.+.-| +.+...+.++||.|.+- ...|.-.+-.+. ....-.+|.||++..
T Consensus 340 ~~~Rqyy~~C~I~GtVDFIFG~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~------~~~~Gfvf~~C~it~ 407 (520)
T PLN02201 340 HTMRQFYRECRITGTVDFIFGDATAVFQNCQILAKKGLPNQKNTITAQGRKDP------NQPTGFSIQFSNISA 407 (520)
T ss_pred CCCCEEEEeeEEeecccEEecCceEEEEccEEEEecCCCCCCceEEecCCCCC------CCCcEEEEEeeEEec
Confidence 23445688888888876 35678899999999642 123322211110 123568999999875
No 46
>PLN02671 pectinesterase
Probab=96.82 E-value=0.038 Score=53.01 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc---cccceEEecC---CceEEEeecCCCCCCCCCCCCCCCCCc
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL---TSHMTLFLAD---DAEILAIENEKYWPLMPPLPSYGYGRE 165 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l~~---ga~i~~~~d~~~~~~~~~~~~~~~G~~ 165 (312)
|-.-||+||+++.. ....--+|+|.||+|.-. +.+ +.+++|..+. +.|++.-.+... ...+ .|..
T Consensus 70 df~TIQ~AIdavP~-~~~~~~~I~Ik~GvY~Ek-V~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~-----~~~~--~g~~ 140 (359)
T PLN02671 70 DSLTVQGAVDMVPD-YNSQRVKIYILPGIYREK-VLVPKSKPYISFIGNESRAGDTVISWNDKAS-----DLDS--NGFE 140 (359)
T ss_pred CccCHHHHHHhchh-cCCccEEEEEeCceEEEE-EEECCCCCeEEEEecCCCCCCEEEEcCCccc-----cccc--CCcc
Confidence 46689999999853 122346899999999743 334 4566776542 234442211100 0000 0000
Q ss_pred CCCCCccc--cEEEe--ceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceE-EEeccccEEEEeeEEEcCCCCeee
Q 021449 166 HHGPRFGS--FIHGQ--NLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLV-QIMWSSDILISNITLRDSPFWTLH 240 (312)
Q Consensus 166 ~~~~~~~~--lI~~~--~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i-~~~~~~nv~I~nvti~ns~~~~i~ 240 (312)
.+...++ .+.+. -++||+|+. . ...+.| .....++ .....++..+.+++|... +.++.
T Consensus 141 -~gT~~SaTv~v~a~~F~a~nitfeN-t-~~~~~g-------------~~~~QAVALrv~gDra~f~~c~f~G~-QDTLy 203 (359)
T PLN02671 141 -LGTYRTASVTIESDYFCATGITFEN-T-VVAEPG-------------GQGMQAVALRISGDKAFFYKVRVLGA-QDTLL 203 (359)
T ss_pred -ccceeeEEEEEECCceEEEeeEEEc-C-CCCCCC-------------CCCccEEEEEEcCccEEEEcceEecc-ccccE
Confidence 0000011 12221 235666665 1 111111 0111233 223578888999888743 33333
Q ss_pred ecccccEEEEeEEEeeCCCC-CCcccEEEEeeEEecCC---ceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 241 PYDCKNVTIRNAFISKIQLF-DSCEDMVIEDCYISVGD---DAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 241 i~~~~nV~I~n~~I~~~~d~-~~s~nV~I~n~~i~~gD---D~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
. ..-.--+++|.|.+.-|+ .+.....++||+|.+-. ..|.-.+-... ....-.++.||++..
T Consensus 204 ~-~~gR~yf~~CyIeG~VDFIFG~g~A~Fe~C~I~s~~~~~G~ITA~~r~~~------~~~~GfvF~~C~itg 269 (359)
T PLN02671 204 D-ETGSHYFYQCYIQGSVDFIFGNAKSLYQDCVIQSTAKRSGAIAAHHRDSP------TEDTGFSFVNCVING 269 (359)
T ss_pred e-CCCcEEEEecEEEEeccEEecceeEEEeccEEEEecCCCeEEEeeccCCC------CCCccEEEEccEEcc
Confidence 2 234567889999888773 56678999999996532 23333221110 113467999999854
No 47
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.82 E-value=0.054 Score=54.56 Aligned_cols=83 Identities=13% Similarity=-0.002 Sum_probs=51.0
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~ 291 (312)
..++...+.++.|..-. .++.. +...--+++|.|.+.-| +.+.....++||.|.+-. .+|.-.+-...
T Consensus 330 v~~Dra~fy~C~f~G~Q-DTLy~-~~~Rqyy~~C~IeGtVDFIFG~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~--- 404 (530)
T PLN02933 330 SGSDHSAFYRCEFDGYQ-DTLYV-HSAKQFYRECDIYGTIDFIFGNAAVVFQNCSLYARKPNPNHKIAFTAQSRNQS--- 404 (530)
T ss_pred EcCCcEEEEEeEEEecc-ccccc-CCCceEEEeeEEecccceeccCceEEEeccEEEEeccCCCCceEEEecCCCCC---
Confidence 34778888888886432 23322 23455788888888876 356678999999995422 22222211110
Q ss_pred cCCCCeecEEEEeEEEee
Q 021449 292 AYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~ 309 (312)
....-++|.||+|..
T Consensus 405 ---~~~tGfvf~~C~it~ 419 (530)
T PLN02933 405 ---DQPTGISIISSRILA 419 (530)
T ss_pred ---CCCceEEEEeeEEec
Confidence 123579999999875
No 48
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.81 E-value=0.0063 Score=57.12 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=46.9
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~ 291 (312)
..+++..+.++.|... +.++.. .....-++||.|...-| +.+.....++||+|.+.. -.|.-.+-.+.
T Consensus 112 ~~~d~~~f~~c~~~g~-QDTL~~-~~~r~y~~~c~IeG~vDFIfG~~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~--- 186 (298)
T PF01095_consen 112 VSGDRAAFYNCRFLGY-QDTLYA-NGGRQYFKNCYIEGNVDFIFGNGTAVFENCTIHSRRPGGGQGGYITAQGRTSP--- 186 (298)
T ss_dssp ET-TSEEEEEEEEE-S-TT-EEE--SSEEEEES-EEEESEEEEEESSEEEEES-EEEE--SSTSSTEEEEEE---CT---
T ss_pred ecCCcEEEEEeEEccc-cceeee-ccceeEEEeeEEEecCcEEECCeeEEeeeeEEEEeccccccceeEEeCCcccc---
Confidence 3567888888888665 345543 34467788888888776 455668889999985421 12332221111
Q ss_pred cCCCCeecEEEEeEEEeec
Q 021449 292 AYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~~ 310 (312)
......++.||+|...
T Consensus 187 ---~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 187 ---SQKSGFVFDNCTITGD 202 (298)
T ss_dssp ---TSS-EEEEES-EEEES
T ss_pred ---CCCeEEEEEEeEEecC
Confidence 1246789999999864
No 49
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=96.80 E-value=0.032 Score=54.51 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCccchHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc---cccceEEe
Q 021449 86 GDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL---TSHMTLFL 136 (312)
Q Consensus 86 gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l 136 (312)
+||. -|-.-||+||+++.......--+|+|-+|+|.-. +.+ +.+++|..
T Consensus 88 ~dGs-Gdf~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~Ek-V~Ip~~kp~ItL~G 139 (422)
T PRK10531 88 GTQG-VTHTTVQAAVDAAIAKRTNKRQYIAVMPGTYQGT-VYVPAAAPPITLYG 139 (422)
T ss_pred CCCC-CCccCHHHHHhhccccCCCceEEEEEeCceeEEE-EEeCCCCceEEEEe
Confidence 4443 2466899999986311112235788999999743 444 45777765
No 50
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.79 E-value=0.0012 Score=46.61 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=23.5
Q ss_pred ccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCC-ceeecccc
Q 021449 84 GVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPG-RWLTAPFN 127 (312)
Q Consensus 84 A~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~G-tYl~~~i~ 127 (312)
|+|||++|||.||.+|+++. ..|.++=-.| ||.+..+-
T Consensus 1 A~GDGvtdDt~A~~a~l~a~------~~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS------PVGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS-------TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhcc------CCCeEEecCCceEEEeeCc
Confidence 68999999999999999974 4555555566 88876553
No 51
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.77 E-value=0.049 Score=55.34 Aligned_cols=177 Identities=14% Similarity=0.092 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc---cccceEEec-CCceEEEeecCCCCCCCCCCCCCCCCCcCC
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL---TSHMTLFLA-DDAEILAIENEKYWPLMPPLPSYGYGREHH 167 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l~-~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~ 167 (312)
|-.-||+||+++.+....+--+|+|.+|+|.-. +.+ +.+++|..+ .+.|++........ .|...
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E~-V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~----------~g~~T- 319 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEET-VRVPLEKKNVVFLGDGMGKTVITGSLNVGQ----------PGIST- 319 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCceEEee-eeecCCCccEEEEecCCCceEEEecCccCC----------CCcCc-
Confidence 466899999998531112345899999999743 333 346666543 12344432111000 01000
Q ss_pred CCCcccc--EEEe--ceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEE-eccccEEEEeeEEEcCCCCeeeec
Q 021449 168 GPRFGSF--IHGQ--NLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQI-MWSSDILISNITLRDSPFWTLHPY 242 (312)
Q Consensus 168 ~~~~~~l--I~~~--~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~-~~~~nv~I~nvti~ns~~~~i~i~ 242 (312)
..++- +.+. -++||+|+.. -| .....++.+ ..++.+.+.++.|..- +.++..
T Consensus 320 --~~saT~~v~~~~f~a~~it~~Nt------ag-------------~~~~QAVAlrv~~D~~~f~~c~~~G~-QDTLy~- 376 (553)
T PLN02708 320 --YNTATVGVLGDGFMARDLTIQNT------AG-------------PDAHQAVAFRSDSDLSVIENCEFLGN-QDTLYA- 376 (553)
T ss_pred --cceEEEEEEcCCeEEEeeEEEcC------CC-------------CCCCceEEEEecCCcEEEEeeeeeec-ccccee-
Confidence 00111 1111 1244444431 01 011223333 3578888888888653 233333
Q ss_pred ccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC----------ceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 243 DCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD----------DAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 243 ~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD----------D~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+...--+++|.|.+.-| +.+...+.++||.|..-. .+|.-.+-.+. ....-++|.||+|..
T Consensus 377 ~~~rq~y~~C~I~GtVDFIFG~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~------~~~~G~vf~~C~it~ 448 (553)
T PLN02708 377 HSLRQFYKSCRIQGNVDFIFGNSAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDP------AQSTGFVFQNCLING 448 (553)
T ss_pred CCCceEEEeeEEeecCCEEecCceEEEEccEEEEeccccCCCCCCceEEEeCCCCCC------CCCceEEEEccEEec
Confidence 34456688899988877 467789999999995421 23322211111 124689999999975
No 52
>PLN02665 pectinesterase family protein
Probab=96.77 E-value=0.042 Score=52.94 Aligned_cols=83 Identities=11% Similarity=0.008 Sum_probs=53.3
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCCc----eEEeccCCCcCCccC
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGDD----AIAIKSGWDQYGIAY 293 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gDD----~Iaiksg~~~~g~~~ 293 (312)
...+...+.+++|... +.++.. +...--+++|.|.+.-| +.+.....+++|+|.+-.+ .|.-.+....
T Consensus 184 v~gDka~f~~C~f~G~-QDTL~~-~~gr~yf~~CyIeG~VDFIFG~g~a~fe~C~i~s~~~~~~g~ITA~~r~~~----- 256 (366)
T PLN02665 184 ISGDKAAFYNCRFIGF-QDTLCD-DKGRHFFKDCYIEGTVDFIFGSGKSLYLNTELHVVGDGGLRVITAQARNSE----- 256 (366)
T ss_pred EcCCcEEEEcceeccc-cceeEe-CCCCEEEEeeEEeeccceeccccceeeEccEEEEecCCCcEEEEcCCCCCC-----
Confidence 4578888999988743 334432 33456789999999887 4667789999999965333 2322221110
Q ss_pred CCCeecEEEEeEEEee
Q 021449 294 GRPSMNILIRNLVVRS 309 (312)
Q Consensus 294 g~~~~nI~I~n~~v~~ 309 (312)
....-.++.||++..
T Consensus 257 -~~~~GfvF~~C~itg 271 (366)
T PLN02665 257 -AEDSGFSFVHCKVTG 271 (366)
T ss_pred -CCCceEEEEeeEEec
Confidence 012457899999865
No 53
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.76 E-value=0.046 Score=55.34 Aligned_cols=83 Identities=12% Similarity=0.044 Sum_probs=47.2
Q ss_pred ccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCcc
Q 021449 220 WSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGIA 292 (312)
Q Consensus 220 ~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~~ 292 (312)
.++...+.++.|..-. .++. .+...--+++|.|.+.-| +.+...+.++||.|..-. ..|.-.+-.+.
T Consensus 339 ~~D~~~f~~C~~~gyQ-DTLy-~~~~rq~y~~c~I~GtVDFIFG~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~---- 412 (538)
T PLN03043 339 NADLSTFYRCSFEGYQ-DTLY-VHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLYARKPMANQKNAFTAQGRTDP---- 412 (538)
T ss_pred cCCcEEEEeeEEeccC-cccc-cCCCcEEEEeeEEeeccceEeecceeeeeccEEEEecCCCCCCceEEecCCCCC----
Confidence 4566666666665321 2222 123345677777777766 356678889999885421 23322211110
Q ss_pred CCCCeecEEEEeEEEeec
Q 021449 293 YGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 293 ~g~~~~nI~I~n~~v~~~ 310 (312)
....-++|.||+|...
T Consensus 413 --~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 413 --NQNTGISIINCTIEAA 428 (538)
T ss_pred --CCCceEEEEecEEecC
Confidence 1235699999999753
No 54
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.76 E-value=0.046 Score=55.91 Aligned_cols=176 Identities=10% Similarity=0.125 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeecccccc---ccceEEec-CCceEEEeecCCCCCCCCCCCCCCCCCcCC
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT---SHMTLFLA-DDAEILAIENEKYWPLMPPLPSYGYGREHH 167 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~---S~~tL~l~-~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~ 167 (312)
|-.-||+||+++.. ....--+|+|.+|+|.-..+.++ .+++|..+ .+.|++...+. .- . +.+.
T Consensus 283 ~f~TIq~Ai~a~P~-~~~~r~vI~Ik~G~Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~-~~---~-----~~~t--- 349 (587)
T PLN02484 283 TFKTISEAIKKAPE-HSSRRTIIYVKAGRYEENNLKVGRKKTNLMFIGDGKGKTVITGGKS-IF---D-----NLTT--- 349 (587)
T ss_pred CcccHHHHHHhccc-cCCCcEEEEEeCCEEEEEEEEECCCCceEEEEecCCCCeEEecCCc-cc---C-----CCcc---
Confidence 35679999999853 12234689999999976435553 45666543 12344321110 00 0 0000
Q ss_pred CCCccccEEEec----eeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEE-eccccEEEEeeEEEcCCCCeeeec
Q 021449 168 GPRFGSFIHGQN----LKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQI-MWSSDILISNITLRDSPFWTLHPY 242 (312)
Q Consensus 168 ~~~~~~lI~~~~----~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~-~~~~nv~I~nvti~ns~~~~i~i~ 242 (312)
..++-+...+ ++||+|+.. -| .....++.+ ..++...+.++.|..-. .++. .
T Consensus 350 --~~saT~~v~~~~F~a~~itf~Nt------ag-------------~~~~QAvAlrv~~D~~~fy~C~~~G~Q-DTLy-~ 406 (587)
T PLN02484 350 --FHTASFAATGAGFIARDMTFENW------AG-------------PAKHQAVALRVGADHAVVYRCNIIGYQ-DTLY-V 406 (587)
T ss_pred --cceEEEEEEcCCEEEEeeEEEEC------CC-------------CCCCceEEEEecCCcEEEEeeeEeccC-cccc-c
Confidence 0011111111 345555441 01 001123332 35778888888876432 2222 2
Q ss_pred ccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 243 DCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 243 ~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+...--+++|.|.+.-| +.+...+.++||.|.+-. ..|.-.+-.+ .....-++|.||+|..
T Consensus 407 ~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~------~~~~~G~vf~~c~i~~ 474 (587)
T PLN02484 407 HSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMAQQKNTITAQNRKD------PNQNTGISIHACRILA 474 (587)
T ss_pred CCCcEEEEecEEEeccceecccceeEEeccEEEEecCCCCCceEEEecCCCC------CCCCcEEEEEeeEEec
Confidence 33455688888888876 467789999999996421 2222211111 0123579999999965
No 55
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0098 Score=55.97 Aligned_cols=138 Identities=19% Similarity=0.254 Sum_probs=97.4
Q ss_pred CCCcEEEeCCCceeeccccccccceEEecCCceEEEeecCCCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEecc
Q 021449 109 KGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGH 188 (312)
Q Consensus 109 ~gGgtv~iP~GtYl~~~i~L~S~~tL~l~~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~ 188 (312)
.+|..+-+. |+|. +++.+....+|..+.+|++-+... +..+.. .+.+++|+|
T Consensus 32 ~pgd~~~i~-g~~~-g~~vInr~l~l~ge~ga~l~g~g~------------------------G~~vtv-~aP~~~v~G- 83 (408)
T COG3420 32 KPGDYYGIS-GRYA-GNFVINRALTLRGENGAVLDGGGK------------------------GSYVTV-AAPDVIVEG- 83 (408)
T ss_pred CCCcEEEEe-eeec-ccEEEccceeeccccccEEecCCc------------------------ccEEEE-eCCCceeee-
Confidence 477788888 8874 566666667777788888765421 122332 347888888
Q ss_pred ceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC----------
Q 021449 189 NGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ---------- 258 (312)
Q Consensus 189 ~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~---------- 258 (312)
-++.|.|.. ++....-.+.-..++.-.|+...+... .++|.+..+.++.|.+++|..-.
T Consensus 84 -l~vr~sg~~---------lp~m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnG 152 (408)
T COG3420 84 -LTVRGSGRS---------LPAMDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNG 152 (408)
T ss_pred -EEEecCCCC---------cccccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCc
Confidence 677776643 122222344455677777777777653 47899999999999999999876
Q ss_pred -CCCCcccEEEEeeEEecCCceEEeccC
Q 021449 259 -LFDSCEDMVIEDCYISVGDDAIAIKSG 285 (312)
Q Consensus 259 -d~~~s~nV~I~n~~i~~gDD~Iaiksg 285 (312)
.++++++++|..+.|+-+.|||-.+..
T Consensus 153 I~vyNa~~a~V~~ndisy~rDgIy~~~S 180 (408)
T COG3420 153 IYVYNAPGALVVGNDISYGRDGIYSDTS 180 (408)
T ss_pred eEEEcCCCcEEEcCccccccceEEEccc
Confidence 356789999999999999999987764
No 56
>PLN02916 pectinesterase family protein
Probab=96.70 E-value=0.047 Score=54.61 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=51.6
Q ss_pred ccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCcc
Q 021449 220 WSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGIA 292 (312)
Q Consensus 220 ~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~~ 292 (312)
.++...+.++.|..-. .++.. +...--+++|.|.+.-| +.+...+.++||.|..-. ..|.-. +...
T Consensus 303 ~~D~a~fy~C~f~G~Q-DTLy~-~~~Rqyy~~C~I~GtVDFIFG~a~avFq~C~I~~~~~~~~~~g~ITAq-~r~~---- 375 (502)
T PLN02916 303 SSDLSVFYRCSFKGYQ-DTLFV-HSLRQFYRDCHIYGTIDFIFGDAAVVFQNCDIFVRRPMDHQGNMITAQ-GRDD---- 375 (502)
T ss_pred cCCcEEEEeeeEeccC-ceeEe-CCCCEEEEecEEecccceeccCceEEEecCEEEEecCCCCCcceEEec-CCCC----
Confidence 5777888888876432 23322 23456788888888876 467789999999985421 233222 1111
Q ss_pred CCCCeecEEEEeEEEeec
Q 021449 293 YGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 293 ~g~~~~nI~I~n~~v~~~ 310 (312)
.....-++|.||+|...
T Consensus 376 -~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 376 -PHENTGISIQHSRVRAS 392 (502)
T ss_pred -CCCCcEEEEEeeEEecC
Confidence 01235799999999753
No 57
>PLN02634 probable pectinesterase
Probab=96.65 E-value=0.072 Score=51.15 Aligned_cols=186 Identities=11% Similarity=0.038 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc---cccceEEec-CCceEEEeecCCCCCCCCCCCCCCCCCcCC
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL---TSHMTLFLA-DDAEILAIENEKYWPLMPPLPSYGYGREHH 167 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l~-~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~ 167 (312)
|-.-||+||+++.+ .....-+|+|-||+|.-. +.+ +.+++|..+ .+.|++.-.+...-.. ..|...
T Consensus 67 df~TIQaAIda~P~-~~~~r~vI~Ik~GvY~Ek-V~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~-------~~g~~~- 136 (359)
T PLN02634 67 DFRSVQDAVDSVPK-NNTMSVTIKINAGFYREK-VVVPATKPYITFQGAGRDVTAIEWHDRASDRG-------ANGQQL- 136 (359)
T ss_pred CccCHHHHHhhCcc-cCCccEEEEEeCceEEEE-EEEcCCCCeEEEEecCCCceEEEecccccccC-------CCCccc-
Confidence 46689999999842 122345799999999743 333 456777653 1234442222110000 000000
Q ss_pred CCCccc-c-EEE--eceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceE-EEeccccEEEEeeEEEcCCCCeeeec
Q 021449 168 GPRFGS-F-IHG--QNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLV-QIMWSSDILISNITLRDSPFWTLHPY 242 (312)
Q Consensus 168 ~~~~~~-l-I~~--~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i-~~~~~~nv~I~nvti~ns~~~~i~i~ 242 (312)
+...++ + +.+ .-++||+|+.. . +... .......++ .....+...+.++.|.. -+.++..
T Consensus 137 ~T~~SaTv~V~a~~F~a~niTf~Nt--a--~~~~----------~g~~~~QAVAl~v~gDra~f~~C~f~G-~QDTL~~- 200 (359)
T PLN02634 137 RTYQTASVTVYANYFTARNISFKNT--A--PAPM----------PGMQGWQAVAFRISGDKAFFFGCGFYG-AQDTLCD- 200 (359)
T ss_pred ccccceEEEEECCCeEEEeCeEEeC--C--ccCC----------CCCCCCceEEEEecCCcEEEEEeEEec-ccceeee-
Confidence 000011 1 111 12455555541 0 0000 001112333 33457888888888874 2334432
Q ss_pred ccccEEEEeEEEeeCCCC-CCcccEEEEeeEEecCC---ceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 243 DCKNVTIRNAFISKIQLF-DSCEDMVIEDCYISVGD---DAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 243 ~~~nV~I~n~~I~~~~d~-~~s~nV~I~n~~i~~gD---D~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+...--+++|.|.+.-|+ .+.....++||+|.+-+ ..|.-.+-... ....-.++.||+|..
T Consensus 201 ~~gR~yf~~CyIeG~VDFIFG~g~a~Fe~C~I~s~~~~~g~ITA~~R~~~------~~~~GfvF~~C~vtg 265 (359)
T PLN02634 201 DAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIAAHGRTCP------EEKTGFAFVGCRVTG 265 (359)
T ss_pred CCCCEEEEeeEEcccccEEcCCceEEEeccEEEEecCCCcEEEeCCCCCC------CCCcEEEEEcCEEcC
Confidence 344567888999888763 56678899999996532 33333221110 012457999999854
No 58
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.64 E-value=0.059 Score=54.63 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=51.8
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCCc------eEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGDD------AIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gDD------~Iaiksg~~~~g~ 291 (312)
..++...+.++.|..-. .++.. +...--+++|.|.+.-| +.+...+.++||.|..-.. .|.-.+-.+
T Consensus 348 v~~D~~~fy~C~~~G~Q-DTLy~-~~~Rqyy~~C~I~GtVDFIFG~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~---- 421 (548)
T PLN02301 348 VSADQAVINRCRIDAYQ-DTLYA-HSLRQFYRDSYITGTVDFIFGNAAVVFQNCKIVARKPMAGQKNMVTAQGRTD---- 421 (548)
T ss_pred ecCCcEEEEeeeeeecc-cccee-cCCcEEEEeeEEEeccceecccceeEEeccEEEEecCCCCCCceEEecCCCC----
Confidence 34778888888876432 23322 33456788888888876 4677899999999955321 222211111
Q ss_pred cCCCCeecEEEEeEEEeec
Q 021449 292 AYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~~ 310 (312)
.....-++|.||+|...
T Consensus 422 --~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 422 --PNQNTGISIQKCDIIAS 438 (548)
T ss_pred --CCCCCEEEEEeeEEecC
Confidence 01235799999998753
No 59
>PLN02176 putative pectinesterase
Probab=96.64 E-value=0.2 Score=47.88 Aligned_cols=179 Identities=11% Similarity=0.069 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc---cccceEEec-CCceEEEeecCCCCCCCCCCCCCCCCCcCC
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL---TSHMTLFLA-DDAEILAIENEKYWPLMPPLPSYGYGREHH 167 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l~-~ga~i~~~~d~~~~~~~~~~~~~~~G~~~~ 167 (312)
|-.-||+||+++.. ....--+|+|.+|+|.-. +.+ +.+++|..+ .+.|++.-.+... . .+.
T Consensus 50 df~TIq~AIdavP~-~~~~~~~I~Ik~GvY~Ek-V~Ip~~k~~vtl~G~g~~~TiIt~~~~~~-t---------~~s--- 114 (340)
T PLN02176 50 YFKTVQSAIDSIPL-QNQNWIRILIQNGIYREK-VTIPKEKGYIYMQGKGIEKTIIAYGDHQA-T---------DTS--- 114 (340)
T ss_pred CccCHHHHHhhchh-cCCceEEEEECCcEEEEE-EEECCCCccEEEEEcCCCceEEEEeCCcc-c---------ccc---
Confidence 46789999999853 112235789999999743 334 457777654 2234443222110 0 000
Q ss_pred CCCccccEEE--eceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceE-EEeccccEEEEeeEEEcCCCCeeeeccc
Q 021449 168 GPRFGSFIHG--QNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLV-QIMWSSDILISNITLRDSPFWTLHPYDC 244 (312)
Q Consensus 168 ~~~~~~lI~~--~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i-~~~~~~nv~I~nvti~ns~~~~i~i~~~ 244 (312)
.+..+.+ .-++|++|...-+.. +++ ......++ .....+...+.+++|.. -+.++.. +.
T Consensus 115 ---aT~~v~a~~F~a~nlT~~Nt~~~~-~~~------------~~~~~QAVAl~v~gDr~~f~~C~f~G-~QDTLy~-~~ 176 (340)
T PLN02176 115 ---ATFTSYASNIIITGITFKNTYNIA-SNS------------SRPTKPAVAARMLGDKYAIIDSSFDG-FQDTLFD-GK 176 (340)
T ss_pred ---eEEEEECCCEEEEeeEEEeCCCcc-CCC------------CCCccceEEEEecCccEEEEccEEec-ccceeEe-CC
Confidence 0011111 123555555410000 000 00112333 33468899999999975 3344443 34
Q ss_pred ccEEEEeEEEeeCCCC-CCcccEEEEeeEEecCCc---------eEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 245 KNVTIRNAFISKIQLF-DSCEDMVIEDCYISVGDD---------AIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 245 ~nV~I~n~~I~~~~d~-~~s~nV~I~n~~i~~gDD---------~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
..--+++|.|.+.-|+ .+.....++||+|.+-++ .|.-. +... .....-.++.||++..
T Consensus 177 gRqyf~~CyIeG~VDFIFG~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~-~r~~-----~~~~~GfvF~~C~itg 245 (340)
T PLN02176 177 GRHYYKRCVISGGIDFIFGYAQSIFEGCTLKLTLGIYPPNEPYGTITAQ-GRPS-----PSDKGGFVFKDCTVTG 245 (340)
T ss_pred cCEEEEecEEEecccEEecCceEEEeccEEEEecccCCCCCCcEEEEeC-CCCC-----CCCCcEEEEECCEEcc
Confidence 5677999999998873 566789999999965332 12111 1100 0012468999999865
No 60
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.63 E-value=0.051 Score=56.18 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=51.4
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~ 291 (312)
..++...+.++.|.. -+.++.. +...--+++|.|.+.-| +.+...+.++||.|..-. ..|.-. +...
T Consensus 362 v~~Dra~fy~C~f~G-~QDTLy~-~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~I~~r~~~~~~~~~ITAq-gr~~--- 435 (670)
T PLN02217 362 VLSDESIFYNCKFDG-YQDTLYA-HSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLLNQACPITAH-GRKD--- 435 (670)
T ss_pred ecCCcEEEEcceeee-ccchhcc-CCCcEEEEeCEEEEeccEEecCceEEEEccEEEEccCCCCCceeEecC-CCCC---
Confidence 457788888888864 2233332 34456788888888876 356678999999995431 112111 1110
Q ss_pred cCCCCeecEEEEeEEEeec
Q 021449 292 AYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~~ 310 (312)
.....-++|.||+|...
T Consensus 436 --~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 436 --PRESTGFVLQGCTIVGE 452 (670)
T ss_pred --CCCCceEEEEeeEEecC
Confidence 01235699999999764
No 61
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.63 E-value=0.013 Score=51.73 Aligned_cols=63 Identities=29% Similarity=0.336 Sum_probs=45.5
Q ss_pred Ceeeec-ccccEEEEeEEEeeC----------C------C---CCCcccEEEEeeEEe-c--------CCceEEeccCCC
Q 021449 237 WTLHPY-DCKNVTIRNAFISKI----------Q------L---FDSCEDMVIEDCYIS-V--------GDDAIAIKSGWD 287 (312)
Q Consensus 237 ~~i~i~-~~~nV~I~n~~I~~~----------~------d---~~~s~nV~I~n~~i~-~--------gDD~Iaiksg~~ 287 (312)
+++.+. .++||.|+|++|... . | +..++||.|+.|.+. . .|..+.++.
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~--- 113 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKK--- 113 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEES---
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEe---
Confidence 455665 899999999999982 1 2 457889999999995 4 466676664
Q ss_pred cCCccCCCCeecEEEEeEEEeec
Q 021449 288 QYGIAYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 288 ~~g~~~g~~~~nI~I~n~~v~~~ 310 (312)
.+.+|+|++|.+.+.
T Consensus 114 --------~s~~vTiS~n~f~~~ 128 (200)
T PF00544_consen 114 --------GSDNVTISNNIFDNH 128 (200)
T ss_dssp --------STEEEEEES-EEEEE
T ss_pred --------CCceEEEEchhcccc
Confidence 368999999999764
No 62
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.62 E-value=0.071 Score=53.26 Aligned_cols=179 Identities=14% Similarity=0.122 Sum_probs=96.7
Q ss_pred chHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccc---cccceEEec-CCceEEEeecCCCCCCCCCCCCCCCCCcC
Q 021449 91 LNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNL---TSHMTLFLA-DDAEILAIENEKYWPLMPPLPSYGYGREH 166 (312)
Q Consensus 91 ddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l~-~ga~i~~~~d~~~~~~~~~~~~~~~G~~~ 166 (312)
-|-.-||+||+++.+ ....--+|+|.+|+|.- .+.+ +.+++|..+ .+.|+....+. . ..|...
T Consensus 207 G~f~TIq~AI~a~P~-~~~~r~vI~Ik~GvY~E-~V~I~~~k~nItliGdg~~~TiIt~n~~--~---------~~g~~T 273 (509)
T PLN02488 207 GKYNTVNAAIAAAPE-HSRKRFVIYIKTGVYDE-IVRIGSTKPNLTLIGDGQDSTIITGNLS--A---------SNGKRT 273 (509)
T ss_pred CCccCHHHHHHhchh-cCCCcEEEEEeCCeeEE-EEEecCCCccEEEEecCCCceEEEEccc--c---------cCCCCc
Confidence 346689999999853 22234689999999974 3444 356666543 22344432211 0 001100
Q ss_pred CCCCccccEEEec--eeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEE-eccccEEEEeeEEEcCCCCeeeecc
Q 021449 167 HGPRFGSFIHGQN--LKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQI-MWSSDILISNITLRDSPFWTLHPYD 243 (312)
Q Consensus 167 ~~~~~~~lI~~~~--~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~-~~~~nv~I~nvti~ns~~~~i~i~~ 243 (312)
.. -.+..+.+.+ ++||+|+..- | ...+.++.+ ..++...+.++.|..- +.++. .+
T Consensus 274 ~~-SATv~v~g~gF~A~nitf~Nta------g-------------~~~~QAVALrv~~Dra~Fy~C~f~Gy-QDTLy-~~ 331 (509)
T PLN02488 274 FY-TATVASNGDGFIGIDMCFRNTA------G-------------PAKGPAVALRVSGDMSVIYRCRIEGY-QDALY-PH 331 (509)
T ss_pred ee-eEEEEEEcCCeEEEeeEEEECC------C-------------CCCCceEEEEecCCcEEEEcceeecc-Cccee-eC
Confidence 00 0011112211 2555554410 0 011233433 4578888888888742 33443 24
Q ss_pred cccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCccCCCCeecEEEEeEEEeec
Q 021449 244 CKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 244 ~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~~ 310 (312)
...--+++|.|.+.-| +.+...+.++||.|.+-. ..|.-.+..+. ....-++|.||++...
T Consensus 332 ~~RqyyrdC~I~GtVDFIFG~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~------~~~tGfvf~~C~it~~ 399 (509)
T PLN02488 332 RDRQFYRECFITGTVDFICGNAAAVFQFCQIVARQPMMGQSNVITAQSRESK------DDNSGFSIQKCNITAS 399 (509)
T ss_pred CCCEEEEeeEEeeccceEecceEEEEEccEEEEecCCCCCCEEEEeCCCCCC------CCCcEEEEEeeEEecC
Confidence 5567789999999887 467789999999995422 22322211110 1235699999998753
No 63
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.57 E-value=0.082 Score=54.14 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=51.8
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCCC-CCcccEEEEeeEEecCC------ceEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLF-DSCEDMVIEDCYISVGD------DAIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d~-~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~ 291 (312)
..++...+.++.|..-. .++.. +...--+++|.|.+.-|+ .+...+.++||.|.... ..|.-.+..+
T Consensus 397 v~~Dr~~f~~c~~~G~Q-DTLy~-~~~Rqyy~~C~I~GtVDFIFG~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~---- 470 (596)
T PLN02745 397 VQSDRSIFLNCRFEGYQ-DTLYA-QTHRQFYRSCVITGTIDFIFGDAAAIFQNCLIFVRKPLPNQQNTVTAQGRVD---- 470 (596)
T ss_pred EcCCcEEEEeeEEeecc-ccccc-CCCcEEEEeeEEEeeccEEecceeEEEEecEEEEecCCCCCCceEEecCCCC----
Confidence 45788888888876432 22222 334567888888888763 67789999999985421 2222211111
Q ss_pred cCCCCeecEEEEeEEEeec
Q 021449 292 AYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~~ 310 (312)
.....-++|.||+|...
T Consensus 471 --~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 471 --KFETTGIVLQNCRIAPD 487 (596)
T ss_pred --CCCCceEEEEeeEEecC
Confidence 11235799999999753
No 64
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.52 E-value=0.083 Score=54.09 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=51.5
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~ 291 (312)
..++...+.++.|..- +.++.. +...--+++|.|.+.-| +.+...+.++||.|..-. ..|.-.+-.+
T Consensus 387 v~~D~~~fy~C~~~g~-QDTLy~-~~~rq~y~~c~I~GtvDFIFG~a~avfq~c~i~~r~~~~~~~~~iTAqgr~~---- 460 (587)
T PLN02313 387 VGSDFSAFYQCDMFAY-QDTLYV-HSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNSGQKNMVTAQGRSD---- 460 (587)
T ss_pred ecCCcEEEEeeeEecc-cchhcc-CCCcEEEEeeEEeeccceeccceeEEEEccEEEEecCCCCCcceEEecCCCC----
Confidence 3577778888887632 333332 34455788888888876 467789999999985321 2333221111
Q ss_pred cCCCCeecEEEEeEEEee
Q 021449 292 AYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~ 309 (312)
.....-++|.||+|..
T Consensus 461 --~~~~tG~v~~~c~i~~ 476 (587)
T PLN02313 461 --PNQNTGIVIQNCRIGG 476 (587)
T ss_pred --CCCCceEEEEecEEec
Confidence 1124679999999864
No 65
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.018 Score=53.45 Aligned_cols=93 Identities=20% Similarity=0.095 Sum_probs=65.5
Q ss_pred eEEEeccccEEEEeeEE-EcCCCCeeeecccccEEEEeEEEeeCC--C-------C-CCcccEEEEeeEEecCCceEEec
Q 021449 215 LVQIMWSSDILISNITL-RDSPFWTLHPYDCKNVTIRNAFISKIQ--L-------F-DSCEDMVIEDCYISVGDDAIAIK 283 (312)
Q Consensus 215 ~i~~~~~~nv~I~nvti-~ns~~~~i~i~~~~nV~I~n~~I~~~~--d-------~-~~s~nV~I~n~~i~~gDD~Iaik 283 (312)
.+.+.-|.|.+|.++-- .---.|++.+.+..||.|+|++|.... | + +.++||.|++|++..+--. .
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~---~ 170 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYN---A 170 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccc---c
Confidence 37888889999888752 112347888888999999999999865 2 2 6789999999999653221 1
Q ss_pred cCCCcCCc-cCCCCeecEEEEeEEEeec
Q 021449 284 SGWDQYGI-AYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 284 sg~~~~g~-~~g~~~~nI~I~n~~v~~~ 310 (312)
++...+|+ .+.+...+|+|++|++.+.
T Consensus 171 ~~~h~DGl~Dik~~AnyITiS~n~fhdh 198 (345)
T COG3866 171 SGSHGDGLVDIKKDANYITISYNKFHDH 198 (345)
T ss_pred cccCCCccEEeccCCcEEEEEeeeeecC
Confidence 12222221 2334578999999999864
No 66
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.44 E-value=0.11 Score=52.93 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=51.9
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~ 291 (312)
..++...+.+++|.... .++.. +...--+++|.|.+.-| +.+...+.++||.|.... ..|.-. +...
T Consensus 370 v~~D~~~fy~c~~~G~Q-DTLy~-~~~rq~y~~C~I~GtvDFIFG~a~avfq~c~i~~~~~~~~~~~~iTA~-~r~~--- 443 (565)
T PLN02468 370 SSADLSVFYRCTMDAFQ-DTLYA-HAQRQFYRECNIYGTVDFIFGNSAVVFQNCNILPRRPMKGQQNTITAQ-GRTD--- 443 (565)
T ss_pred EcCCcEEEEEeEEEecc-chhcc-CCCceEEEeeEEecccceeeccceEEEeccEEEEecCCCCCCceEEec-CCCC---
Confidence 45778888888885432 23322 23455688888888876 467789999999995421 223221 1110
Q ss_pred cCCCCeecEEEEeEEEeec
Q 021449 292 AYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~~ 310 (312)
.....-++|.||+|...
T Consensus 444 --~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 444 --PNQNTGISIQNCTILPL 460 (565)
T ss_pred --CCCCceEEEEccEEecC
Confidence 01235699999999753
No 67
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.43 E-value=0.086 Score=53.78 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=51.6
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCCC-CCcccEEEEeeEEecCC------ceEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLF-DSCEDMVIEDCYISVGD------DAIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d~-~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~ 291 (312)
..++...+.++.|... +.++.. +...--+++|.|.+.-|+ .+...+.++||.|..-. ..|.-. +...
T Consensus 372 v~~D~~~f~~c~~~G~-QDTLy~-~~~Rqyy~~C~I~GtVDFIFG~a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~--- 445 (572)
T PLN02990 372 VSADYAVFYNCQIDGY-QDTLYV-HSHRQFFRDCTVSGTVDFIFGDAKVVLQNCNIVVRKPMKGQSCMITAQ-GRSD--- 445 (572)
T ss_pred EcCCcEEEEeeeEecc-cchhcc-CCCcEEEEeeEEecccceEccCceEEEEccEEEEecCCCCCceEEEeC-CCCC---
Confidence 3577888888888642 233332 344567888888888763 56678999999995421 112211 1110
Q ss_pred cCCCCeecEEEEeEEEeec
Q 021449 292 AYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~~ 310 (312)
.....-++|.||+|...
T Consensus 446 --~~~~~G~vf~~C~it~~ 462 (572)
T PLN02990 446 --VRESTGLVLQNCHITGE 462 (572)
T ss_pred --CCCCceEEEEeeEEecC
Confidence 01235799999999753
No 68
>PLN02314 pectinesterase
Probab=96.41 E-value=0.1 Score=53.40 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=52.5
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCC-CCCcccEEEEeeEEecCC------ceEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-FDSCEDMVIEDCYISVGD------DAIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~~gD------D~Iaiksg~~~~g~ 291 (312)
..++...+.++.|..- +.++. .+...--+++|.|.+.-| +.+...+.++||.|..-. ..|.-.+-.+
T Consensus 390 v~~D~~~f~~c~~~G~-QDTLy-~~~~rq~y~~C~I~GtvDFIFG~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~---- 463 (586)
T PLN02314 390 SGSDMSVFYQCSFDAF-QDTLY-AHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKD---- 463 (586)
T ss_pred ecCCcEEEEeeEEEec-cchhe-eCCCCEEEEeeEEEeccceeccCceeeeeccEEEEecCCCCCCceEecCCCCC----
Confidence 4577778888888642 22332 234456788888888876 467789999999995421 2332221111
Q ss_pred cCCCCeecEEEEeEEEeec
Q 021449 292 AYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~~ 310 (312)
.....-++|.||+|...
T Consensus 464 --~~~~~G~vf~~c~i~~~ 480 (586)
T PLN02314 464 --PNQNTGISIQRCTISAF 480 (586)
T ss_pred --CCCCCEEEEEeeEEecC
Confidence 01235799999998763
No 69
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.40 E-value=0.1 Score=52.91 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHhh-ccCCCcEEEeCCCceeeccccc---cccceEEecC-CceEEEeecCCCCCCCCCCCCCCCCCcC
Q 021449 92 NTEAFQRAVYAISKL-GKKGGGQLNVPPGRWLTAPFNL---TSHMTLFLAD-DAEILAIENEKYWPLMPPLPSYGYGREH 166 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~-~~~gGgtv~iP~GtYl~~~i~L---~S~~tL~l~~-ga~i~~~~d~~~~~~~~~~~~~~~G~~~ 166 (312)
|-.-||+||+++..- ...+--+|+|.+|+|.-. +.+ +.+++|..+. +.|++...+. .. .|...
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~~k~~i~l~G~g~~~TvIt~~~~--~~---------~~~~T 301 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRLNNDDIMLVGDGMRSTIITGGRS--VK---------GGYTT 301 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecCCCCcEEEEEcCCCCeEEEeCCc--cC---------CCCcc
Confidence 466899999998421 012346899999999744 333 3577776541 2344432111 00 00000
Q ss_pred CCCCccc--cEEEe--ceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEE-eccccEEEEeeEEEcCCCCeeee
Q 021449 167 HGPRFGS--FIHGQ--NLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQI-MWSSDILISNITLRDSPFWTLHP 241 (312)
Q Consensus 167 ~~~~~~~--lI~~~--~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~-~~~~nv~I~nvti~ns~~~~i~i 241 (312)
..++ .+.+. -++||+|+..- | ...+.++.+ ..++...+.+++|.... .++.
T Consensus 302 ---~~SaT~~v~~~~F~a~nitf~Nta----g---------------~~~~QAVAlrv~~Dr~~f~~c~~~G~Q-DTLy- 357 (539)
T PLN02995 302 ---YNSATAGIEGLHFIAKGITFRNTA----G---------------PAKGQAVALRSSSDLSIFYKCSIEGYQ-DTLM- 357 (539)
T ss_pred ---cceEEEEEECCCeEEEeeEEEeCC----C---------------CCCCceEEEEEcCCceeEEcceEeccc-chhc-
Confidence 0011 11111 13555554410 0 001223333 45788888888886532 2222
Q ss_pred cccccEEEEeEEEeeCCCC-CCcccEEEEeeEEecCCc------eEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 242 YDCKNVTIRNAFISKIQLF-DSCEDMVIEDCYISVGDD------AIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 242 ~~~~nV~I~n~~I~~~~d~-~~s~nV~I~n~~i~~gDD------~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
.+...--+++|.|.+.-|+ .+.....++||.|.+-.+ .|.-. +... .....-++|.||+|..
T Consensus 358 ~~~~Rqyy~~C~I~GtVDFIFG~a~avf~~C~i~~~~~~~~~~~~iTA~-~r~~-----~~~~~G~vf~~c~i~~ 426 (539)
T PLN02995 358 VHSQRQFYRECYIYGTVDFIFGNAAAVFQNCIILPRRPLKGQANVITAQ-GRAD-----PFQNTGISIHNSRILP 426 (539)
T ss_pred cCCCceEEEeeEEeeccceEecccceEEeccEEEEecCCCCCcceEecC-CCCC-----CCCCceEEEEeeEEec
Confidence 2334567889999888774 667899999999965321 22211 1100 0123678999999875
No 70
>PLN02197 pectinesterase
Probab=96.36 E-value=0.12 Score=52.80 Aligned_cols=85 Identities=18% Similarity=0.119 Sum_probs=49.3
Q ss_pred eccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCCCC-CCcccEEEEeeEEecCCc------eEEeccCCCcCCc
Q 021449 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLF-DSCEDMVIEDCYISVGDD------AIAIKSGWDQYGI 291 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d~-~~s~nV~I~n~~i~~gDD------~Iaiksg~~~~g~ 291 (312)
..++...+.++.|..-. .++.. +...--+++|.|.+.-|+ .+...+.++||.|..... .|.- .+....
T Consensus 389 v~~D~~~fy~C~f~GyQ-DTLy~-~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~r~~~~~~~~~iTA-qgr~~~-- 463 (588)
T PLN02197 389 VNGDRAVIFNCRFDGYQ-DTLYV-NNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKGSKGQYNTVTA-DGNEKG-- 463 (588)
T ss_pred ecCCcEEEEEeEEEecC-cceEe-cCCCEEEEeeEEEecccccccceeeeeecCEEEEecCCCCCceeEEC-CCCCCC--
Confidence 34777788888876432 23332 334556888888888763 566679999999854211 1111 111000
Q ss_pred cCCCCeecEEEEeEEEeec
Q 021449 292 AYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~~ 310 (312)
.....-++|.||+|...
T Consensus 464 --~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 464 --LAMKIGIVLQNCRIVPD 480 (588)
T ss_pred --CCCCcEEEEEccEEecC
Confidence 00124589999999753
No 71
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.29 E-value=0.31 Score=47.11 Aligned_cols=148 Identities=10% Similarity=0.136 Sum_probs=93.3
Q ss_pred EeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCC-ceee-ccccccccceEEecCCceEEEeec-CCCCCCC
Q 021449 78 NLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPG-RWLT-APFNLTSHMTLFLADDAEILAIEN-EKYWPLM 154 (312)
Q Consensus 78 ~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~G-tYl~-~~i~L~S~~tL~l~~ga~i~~~~d-~~~~~~~ 154 (312)
.|+.|=..++. | ++.||+. -++|.+-|| +|.+ +++.|++.+.+. ..||+++.... ...+...
T Consensus 45 qvkt~~~~P~e--D----le~~I~~--------haKVaL~Pg~~Y~i~~~V~I~~~cYIi-GnGA~V~v~~~~~~~f~v~ 109 (386)
T PF01696_consen 45 QVKTYWMEPGE--D----LEEAIRQ--------HAKVALRPGAVYVIRKPVNIRSCCYII-GNGATVRVNGPDRVAFRVC 109 (386)
T ss_pred eEEEEEcCCCc--C----HHHHHHh--------cCEEEeCCCCEEEEeeeEEecceEEEE-CCCEEEEEeCCCCceEEEE
Confidence 55666555553 3 3444443 457888888 6864 799999998874 56999987532 2112110
Q ss_pred CCCCCCCCCCcCCCCCccccEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEEEcC
Q 021449 155 PPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDS 234 (312)
Q Consensus 155 ~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti~ns 234 (312)
.... .|.| .+..+|++.. =.+++.+. -..+.|....++++.|+.+.+.
T Consensus 110 ---------~~~~----~P~V--~gM~~VtF~n--i~F~~~~~---------------~~g~~f~~~t~~~~hgC~F~gf 157 (386)
T PF01696_consen 110 ---------MQSM----GPGV--VGMEGVTFVN--IRFEGRDT---------------FSGVVFHANTNTLFHGCSFFGF 157 (386)
T ss_pred ---------cCCC----CCeE--eeeeeeEEEE--EEEecCCc---------------cceeEEEecceEEEEeeEEecC
Confidence 0001 1222 3456777765 45555431 1357888899999999999998
Q ss_pred CCCeeeecccccEEEEeEEEeeCC---CCCCcccEEEEeeEEe
Q 021449 235 PFWTLHPYDCKNVTIRNAFISKIQ---LFDSCEDMVIEDCYIS 274 (312)
Q Consensus 235 ~~~~i~i~~~~nV~I~n~~I~~~~---d~~~s~nV~I~n~~i~ 274 (312)
.+..+... ...+|++|++.+-. ...+-..+.|.+|.|.
T Consensus 158 ~g~cl~~~--~~~~VrGC~F~~C~~gi~~~~~~~lsVk~C~Fe 198 (386)
T PF01696_consen 158 HGTCLESW--AGGEVRGCTFYGCWKGIVSRGKSKLSVKKCVFE 198 (386)
T ss_pred cceeEEEc--CCcEEeeeEEEEEEEEeecCCcceEEeeheeee
Confidence 77766554 68889999998766 2333446666666664
No 72
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=95.81 E-value=0.54 Score=43.70 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=37.6
Q ss_pred CCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCCce---eeccccccccceEEec
Q 021449 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRW---LTAPFNLTSHMTLFLA 137 (312)
Q Consensus 73 ~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtY---l~~~i~L~S~~tL~l~ 137 (312)
....+||.||-. .|--++|..|+. .+.||++|+|-- +-..+.++.+.||+++
T Consensus 31 ~~~~vni~dy~~-----~dwiasfkqaf~--------e~qtvvvpagl~cenint~ifip~gktl~v~ 85 (464)
T PRK10123 31 ARQSVNINDYNP-----HDWIASFKQAFS--------EGQTVVVPAGLVCDNINTGIFIPPGKTLHIL 85 (464)
T ss_pred CCceeehhhcCc-----ccHHHHHHHHhc--------cCcEEEecCccEecccccceEeCCCCeEEEE
Confidence 456789999964 355667777765 477999999953 2346788888888775
No 73
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=94.37 E-value=2.1 Score=43.06 Aligned_cols=169 Identities=17% Similarity=0.238 Sum_probs=81.1
Q ss_pred CCcEEEeCCCceeecccccc-ccceEEecCCceEEEeecCCCCCCCC-CCCCCC-CC-C-cCC--CCCccccEEEeceee
Q 021449 110 GGGQLNVPPGRWLTAPFNLT-SHMTLFLADDAEILAIENEKYWPLMP-PLPSYG-YG-R-EHH--GPRFGSFIHGQNLKD 182 (312)
Q Consensus 110 gGgtv~iP~GtYl~~~i~L~-S~~tL~l~~ga~i~~~~d~~~~~~~~-~~~~~~-~G-~-~~~--~~~~~~lI~~~~~~n 182 (312)
..-+|||-||-|.-|.+... ..-.+++-.-++|-+. .|.... +..+|. .+ . ... ..++-..+...+..+
T Consensus 255 n~~~VYlApGAyVkGAf~~~~~~~nv~i~G~GVLSGe----~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~ 330 (582)
T PF03718_consen 255 NTKWVYLAPGAYVKGAFEYTDTQQNVKITGRGVLSGE----QYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQT 330 (582)
T ss_dssp T--EEEE-TTEEEES-EEE---SSEEEEESSSEEE-T----TS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEE
T ss_pred CccEEEEcCCcEEEEEEEEccCCceEEEEeeEEEcCc----ceeEeccCCCCccccccccccchhhhhhhhhhccCCcce
Confidence 46799999999988888665 2233443333555543 222111 000110 00 0 000 001111123445567
Q ss_pred EEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccc----cEEEEeeEEEcCCCC---eeeecccccEEEEeEEEe
Q 021449 183 VVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSS----DILISNITLRDSPFW---TLHPYDCKNVTIRNAFIS 255 (312)
Q Consensus 183 I~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~----nv~I~nvti~ns~~~---~i~i~~~~nV~I~n~~I~ 255 (312)
+.+.| -+|.- ..+ ..+.+.+.. +..|+|.+...+=+| ++.+ |.|-+|+||-++
T Consensus 331 ~~~~G--iTI~~--pP~--------------~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~l--y~nS~i~dcF~h 390 (582)
T PF03718_consen 331 LTCEG--ITIND--PPF--------------HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIEL--YPNSTIRDCFIH 390 (582)
T ss_dssp EEEES---EEE----SS---------------SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEE
T ss_pred EEEEe--eEecC--CCc--------------ceEEecCCccccccceeeceeeeeeEEeccCCccc--cCCCeeeeeEEE
Confidence 88887 45531 111 135555433 478999998865443 4554 578889999999
Q ss_pred eCCCC--CCcccEEEEeeEE-ecCCceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 256 KIQLF--DSCEDMVIEDCYI-SVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 256 ~~~d~--~~s~nV~I~n~~i-~~gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+.+|. -.-+++.|+||++ ...-+.| |.-||.. +...||.|+|+.|-.
T Consensus 391 ~nDD~iKlYhS~v~v~~~ViWk~~Ngpi-iq~GW~p------r~isnv~veni~IIh 440 (582)
T PF03718_consen 391 VNDDAIKLYHSNVSVSNTVIWKNENGPI-IQWGWTP------RNISNVSVENIDIIH 440 (582)
T ss_dssp ESS-SEE--STTEEEEEEEEEE-SSS-S-EE--CS---------EEEEEEEEEEEEE
T ss_pred ecCchhheeecCcceeeeEEEecCCCCe-EEeeccc------cccCceEEeeeEEEe
Confidence 99974 2448999999999 4333344 4555643 357899999988754
No 74
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=92.08 E-value=2.5 Score=41.02 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=57.9
Q ss_pred eccccEEEEeeEEEcCC-CCeeeecccccEEEEeEEEeeCC--CCCCcccEEEEeeEEecCCceEEeccCCCcCCccCCC
Q 021449 219 MWSSDILISNITLRDSP-FWTLHPYDCKNVTIRNAFISKIQ--LFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGR 295 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~-~~~i~i~~~~nV~I~n~~I~~~~--d~~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~g~ 295 (312)
.+-.+|++.|+.+...+ .-++.+..-.++++.+|.+.+.. -++......|++|+|..---|| . ++
T Consensus 118 ~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~~~~VrGC~F~~C~~gi--~----------~~ 185 (386)
T PF01696_consen 118 VGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFHGTCLESWAGGEVRGCTFYGCWKGI--V----------SR 185 (386)
T ss_pred eeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCcceeEEEcCCcEEeeeEEEEEEEEe--e----------cC
Confidence 44578999999998777 66777888889999999998876 2455578889999985432233 2 22
Q ss_pred CeecEEEEeEEEeec
Q 021449 296 PSMNILIRNLVVRSM 310 (312)
Q Consensus 296 ~~~nI~I~n~~v~~~ 310 (312)
+...+.|++|++..+
T Consensus 186 ~~~~lsVk~C~FekC 200 (386)
T PF01696_consen 186 GKSKLSVKKCVFEKC 200 (386)
T ss_pred CcceEEeeheeeehe
Confidence 456777777777654
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=91.90 E-value=3.6 Score=38.94 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHHhhccCCCcEEEeCCCceeecccccc-c--cceEEec
Q 021449 91 LNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT-S--HMTLFLA 137 (312)
Q Consensus 91 ddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~-S--~~tL~l~ 137 (312)
++-.-||+|++++....+..--.|-+-+|.|.- .+.++ + .+||+.+
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e-~v~Vp~~~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQE-TVYVPAAPGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceece-eEEecCCCCceeEEec
Confidence 566789999999842211123456678999952 23332 2 3777753
No 76
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=90.03 E-value=2.1 Score=37.27 Aligned_cols=73 Identities=25% Similarity=0.390 Sum_probs=46.5
Q ss_pred EEEEeeEEEcCC------CCeeeecccccEEEEeEEEeeCC----CC---------C-----------CcccEEEEeeEE
Q 021449 224 ILISNITLRDSP------FWTLHPYDCKNVTIRNAFISKIQ----LF---------D-----------SCEDMVIEDCYI 273 (312)
Q Consensus 224 v~I~nvti~ns~------~~~i~i~~~~nV~I~n~~I~~~~----d~---------~-----------~s~nV~I~n~~i 273 (312)
+.|+|+++.... .-++.+..|+++.|+||++.... .+ . ++.++.+.||.+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIF 173 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCccc
Confidence 449999887543 24588888999999999998753 00 0 112234455555
Q ss_pred ecCCceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 274 SVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 274 ~~gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
..+++++.. ..++++|+||++..
T Consensus 174 ~~~~~g~~~-------------~~~~~~i~n~~~~~ 196 (225)
T PF12708_consen 174 NGGDNGIIL-------------GNNNITISNNTFEG 196 (225)
T ss_dssp ESSSCSEEC-------------EEEEEEEECEEEES
T ss_pred cCCCceeEe-------------ecceEEEEeEEECC
Confidence 555555211 13799999999876
No 77
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=87.79 E-value=1.2 Score=28.93 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=35.1
Q ss_pred EEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeC
Q 021449 216 VQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKI 257 (312)
Q Consensus 216 i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~ 257 (312)
|.+..+.+.+|++-++.+... +|++..+.+.++.+.++...
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~-GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred EEEEecCCCEEECcEEeCCCC-EEEEEeCCCCEeECCEEEcC
Confidence 677888999999999999887 99999999988888887653
No 78
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=86.02 E-value=6.5 Score=34.29 Aligned_cols=62 Identities=24% Similarity=0.165 Sum_probs=43.7
Q ss_pred ccEEEEeeEEEcCCCCeeeecc---------cccEEEEeEEEeeCC-----C------CCCcccEEEEeeEEe-cCCceE
Q 021449 222 SDILISNITLRDSPFWTLHPYD---------CKNVTIRNAFISKIQ-----L------FDSCEDMVIEDCYIS-VGDDAI 280 (312)
Q Consensus 222 ~nv~I~nvti~ns~~~~i~i~~---------~~nV~I~n~~I~~~~-----d------~~~s~nV~I~n~~i~-~gDD~I 280 (312)
++|.|.|=+|.|...++|-+.+ .+||.|++..|.... + ..+-.|.+|||+.|+ .-.-+|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai 81 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAI 81 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceE
Confidence 5778888888887777765543 358888888887765 1 223458899999995 556667
Q ss_pred Eec
Q 021449 281 AIK 283 (312)
Q Consensus 281 aik 283 (312)
+-+
T Consensus 82 ~~~ 84 (198)
T PF08480_consen 82 AQM 84 (198)
T ss_pred EEE
Confidence 654
No 79
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=83.04 E-value=1.4 Score=28.65 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=28.6
Q ss_pred CCcccEEEEeeEEecCCceEEeccCCCcCCccCCCCeecEEEEeEEEeecC
Q 021449 261 DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSMV 311 (312)
Q Consensus 261 ~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~~~ 311 (312)
+.+.+.+|+++.+....|+|.+.. +.+.+|+++++.++.
T Consensus 5 ~~s~~~~i~~N~i~~~~~GI~~~~------------s~~n~i~~N~~~~n~ 43 (44)
T TIGR03804 5 ESSSNNTLENNTASNNSYGIYLTD------------SSNNTLSNNTASSNS 43 (44)
T ss_pred EecCCCEEECcEEeCCCCEEEEEe------------CCCCEeECCEEEcCc
Confidence 456777799999977667998864 466777888777654
No 80
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=77.12 E-value=10 Score=35.49 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=36.0
Q ss_pred eEEEeccccEEEEeeEEEcC-CC---------CeeeecccccEEEEeEEEeeCC
Q 021449 215 LVQIMWSSDILISNITLRDS-PF---------WTLHPYDCKNVTIRNAFISKIQ 258 (312)
Q Consensus 215 ~i~~~~~~nv~I~nvti~ns-~~---------~~i~i~~~~nV~I~n~~I~~~~ 258 (312)
++..++.+++.|+|++-+|- |. .++.+++|+|..|+|+.+.+..
T Consensus 261 lvhvengkhfvirnvkaknitpdfskkagidnatvaiygcdnfvidni~mvnsa 314 (464)
T PRK10123 261 LIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSA 314 (464)
T ss_pred eEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEcccceEEecccccccc
Confidence 78888999999999998773 22 3578899999999999888765
No 81
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=76.76 E-value=12 Score=33.37 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=35.3
Q ss_pred eEEEeccc-cEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC----CCCCc-------ccEEEEeeEEecCCceEEe
Q 021449 215 LVQIMWSS-DILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ----LFDSC-------EDMVIEDCYISVGDDAIAI 282 (312)
Q Consensus 215 ~i~~~~~~-nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~----d~~~s-------~nV~I~n~~i~~gDD~Iai 282 (312)
++.|.... .++|.+--.++++.=-+.....-.++|+|++...-. .-..| ++|.|++.....+..-+.|
T Consensus 98 A~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~nF~a~d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~gi 177 (215)
T PF03211_consen 98 AATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIKNFYAEDFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGI 177 (215)
T ss_dssp SEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEEEEEEEEEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEE
T ss_pred eeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEEeEEEcCCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEE
Confidence 45555544 445555444444444466666667777776665543 11222 2366666555544433444
Q ss_pred cc
Q 021449 283 KS 284 (312)
Q Consensus 283 ks 284 (312)
.+
T Consensus 178 N~ 179 (215)
T PF03211_consen 178 NR 179 (215)
T ss_dssp EE
T ss_pred EC
Confidence 33
No 82
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=75.64 E-value=3.6 Score=22.50 Aligned_cols=22 Identities=32% Similarity=0.438 Sum_probs=16.3
Q ss_pred cccEEEEeeEEe-cCCceEEecc
Q 021449 263 CEDMVIEDCYIS-VGDDAIAIKS 284 (312)
Q Consensus 263 s~nV~I~n~~i~-~gDD~Iaiks 284 (312)
+.+++|++|.|. ++.+||.+..
T Consensus 1 ~~~~~i~~n~i~~~~~~Gi~i~~ 23 (26)
T smart00710 1 SSNVTIENNTIRNNGGDGIYIGG 23 (26)
T ss_pred CCCEEEECCEEEeCCCCcEEEec
Confidence 357899999984 5555888764
No 83
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=75.09 E-value=32 Score=34.73 Aligned_cols=88 Identities=10% Similarity=0.153 Sum_probs=50.9
Q ss_pred EEeccccEEEEeeEEEcCCCCe----e-eecccccEEEEeEEEeeCC---------------------C-CCCcccEEEE
Q 021449 217 QIMWSSDILISNITLRDSPFWT----L-HPYDCKNVTIRNAFISKIQ---------------------L-FDSCEDMVIE 269 (312)
Q Consensus 217 ~~~~~~nv~I~nvti~ns~~~~----i-~i~~~~nV~I~n~~I~~~~---------------------d-~~~s~nV~I~ 269 (312)
.....+++..+||+|+|..... + .-...+...+.+|.|.+.. | +.+.....++
T Consensus 265 ~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~G~vDFIFG~a~avf~ 344 (497)
T PLN02698 265 FTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQ 344 (497)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEeeEEEeccceEecccceeec
Confidence 3446799999999999985431 1 1124666667777666644 3 2345667777
Q ss_pred eeEEecCC------ceEEeccCCCcCCccCCCCeecEEEEeEEEeec
Q 021449 270 DCYISVGD------DAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 270 n~~i~~gD------D~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~~ 310 (312)
||.|..-. ..|.-.+-.+ .....-++|.||+|...
T Consensus 345 ~C~i~~~~~~~~~~~~iTAq~r~~------~~~~~G~vf~~c~i~~~ 385 (497)
T PLN02698 345 NCYLFLRRPHGKSYNVILANGRSD------PGQNTGFSLQSCRIRTS 385 (497)
T ss_pred ccEEEEecCCCCCceEEEecCCCC------CCCCceEEEEeeEEecC
Confidence 77774311 1222111111 01235789999998753
No 84
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=74.18 E-value=7.9 Score=35.37 Aligned_cols=87 Identities=20% Similarity=0.155 Sum_probs=59.9
Q ss_pred ceEEEeccccEEEEeeEEEcC---CCCeeeecccccEEEEeEEEeeCC-C---------CCCcccEEEEeeEEecCCceE
Q 021449 214 PLVQIMWSSDILISNITLRDS---PFWTLHPYDCKNVTIRNAFISKIQ-L---------FDSCEDMVIEDCYISVGDDAI 280 (312)
Q Consensus 214 ~~i~~~~~~nv~I~nvti~ns---~~~~i~i~~~~nV~I~n~~I~~~~-d---------~~~s~nV~I~n~~i~~gDD~I 280 (312)
..+.+....+.+|+++++.|+ ...++.+..+ +.+|+|++|.... + -....+++|.++.+.....+|
T Consensus 89 qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi 167 (246)
T PF07602_consen 89 QNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGI 167 (246)
T ss_pred eeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCe
Confidence 456778899999999999998 3456887666 9999999999864 1 123456778777776555577
Q ss_pred EeccCCCcCCccCCCCeecEEEEeEEEeec
Q 021449 281 AIKSGWDQYGIAYGRPSMNILIRNLVVRSM 310 (312)
Q Consensus 281 aiksg~~~~g~~~g~~~~nI~I~n~~v~~~ 310 (312)
++..... +.+| .|+|+++.++
T Consensus 168 ~i~~~~~--------~~~n-~I~NN~I~~N 188 (246)
T PF07602_consen 168 SISDNAA--------PVEN-KIENNIIENN 188 (246)
T ss_pred EEEcccC--------Cccc-eeeccEEEeC
Confidence 7654321 2232 5577777654
No 85
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=74.16 E-value=11 Score=35.94 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=28.3
Q ss_pred cEEEeceeeEEEeccceEEecCCchhhhHhhhcccCCCCCceEEEeccccEEEEeeEE
Q 021449 174 FIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITL 231 (312)
Q Consensus 174 lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~~~~~~r~~~i~~~~~~nv~I~nvti 231 (312)
-|+..+..++.|+| -+|.|... ..-..|+..|.++++++.+|.+-.+
T Consensus 122 Gi~l~~s~d~~i~~--n~i~G~~~---------~r~~~rGnGI~vyNa~~a~V~~ndi 168 (408)
T COG3420 122 GIYLHGSADVRIEG--NTIQGLAD---------LRVAERGNGIYVYNAPGALVVGNDI 168 (408)
T ss_pred EEEEeccCceEEEe--eEEeeccc---------cchhhccCceEEEcCCCcEEEcCcc
Confidence 35667778888888 46665432 1123455666676666666665444
No 86
>PLN02773 pectinesterase
Probab=70.17 E-value=70 Score=30.40 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEeCCCceeecccccc---ccceEEe
Q 021449 93 TEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT---SHMTLFL 136 (312)
Q Consensus 93 T~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~---S~~tL~l 136 (312)
-.-||+||+++.. ....--+|+|.+|+|. ..+.++ .+++|..
T Consensus 17 f~TIq~Aida~P~-~~~~~~~I~Ik~G~Y~-E~V~I~~~k~~itl~G 61 (317)
T PLN02773 17 YCTVQDAIDAVPL-CNRCRTVIRVAPGVYR-QPVYVPKTKNLITLAG 61 (317)
T ss_pred ccCHHHHHhhchh-cCCceEEEEEeCceEE-EEEEECcCCccEEEEe
Confidence 5689999999853 1122457999999997 344453 4567765
No 87
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=70.09 E-value=37 Score=33.64 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhccCCCcEEEeCCCceeeccccccccceEEec
Q 021449 94 EAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLA 137 (312)
Q Consensus 94 ~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~S~~tL~l~ 137 (312)
+.|.+|+.... ....+..+.+-.|+|.+..|.+.|.+.+..+
T Consensus 33 D~iEea~~~l~--e~~~e~LIFlH~G~~e~~~i~I~sdvqiiGA 74 (625)
T KOG1777|consen 33 DHIEEALRFLD--ENDEEKLIFLHEGTHETETIRITSDVQIIGA 74 (625)
T ss_pred hhHHHHhhhcc--cccccceEEEEeccccceEEEEcCCeeEecc
Confidence 34566666552 1234667778899998888888888777543
No 88
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=59.62 E-value=19 Score=31.43 Aligned_cols=59 Identities=25% Similarity=0.269 Sum_probs=34.5
Q ss_pred ccEEEEeEEEeeCC-------------CCCCcccEEEEeeEE-ecCCc-eEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 245 KNVTIRNAFISKIQ-------------LFDSCEDMVIEDCYI-SVGDD-AIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 245 ~nV~I~n~~I~~~~-------------d~~~s~nV~I~n~~i-~~gDD-~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+||+|-|.+|.... +-+..+||.|.++.| ++|-. .+..-.| + +....+|-+|+|++|..
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGG-----I-v~sGF~ntlIENNVfDG 75 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGG-----I-VTSGFYNTLIENNVFDG 75 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeee-----E-EeccccccEEEeeeecc
Confidence 46777777777764 344567999999998 55431 1111111 1 22345666777766643
No 89
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=50.40 E-value=53 Score=31.39 Aligned_cols=64 Identities=17% Similarity=0.097 Sum_probs=39.6
Q ss_pred EEeccccEEEEeeEEEcCCCCee---------eecccccEEEEeEEEeeCCCC---C--------C---cccEEEEeeEE
Q 021449 217 QIMWSSDILISNITLRDSPFWTL---------HPYDCKNVTIRNAFISKIQLF---D--------S---CEDMVIEDCYI 273 (312)
Q Consensus 217 ~~~~~~nv~I~nvti~ns~~~~i---------~i~~~~nV~I~n~~I~~~~d~---~--------~---s~nV~I~n~~i 273 (312)
.+...+++..+|++++|...-+. .....+.+.++||++.+..|. . + .-.-.++||+|
T Consensus 184 ~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI 263 (405)
T COG4677 184 FWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYI 263 (405)
T ss_pred heeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheeccee
Confidence 45566777788888887644332 234678888888888887631 1 1 11446778887
Q ss_pred ecCCceE
Q 021449 274 SVGDDAI 280 (312)
Q Consensus 274 ~~gDD~I 280 (312)
...=|-|
T Consensus 264 ~GdvDfI 270 (405)
T COG4677 264 EGDVDFI 270 (405)
T ss_pred cccceEE
Confidence 6433433
No 90
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=45.35 E-value=3e+02 Score=27.33 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=27.7
Q ss_pred eccccEEEEeeEEEcCCCCeeeec-----------ccccEEEEeEEEeeCCC-CCCcccEEEEeeEEe
Q 021449 219 MWSSDILISNITLRDSPFWTLHPY-----------DCKNVTIRNAFISKIQL-FDSCEDMVIEDCYIS 274 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~~i~i~-----------~~~nV~I~n~~I~~~~d-~~~s~nV~I~n~~i~ 274 (312)
...+.+.+.+|+|... +.++... .-..--+++|.|.+.-| +.+.-...++||+|.
T Consensus 235 v~GDra~fy~C~flG~-QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFIFG~g~AvFenC~I~ 301 (422)
T PRK10531 235 TDGDKVQIENVNILGR-QDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFVFGRGAVVFDNTEFR 301 (422)
T ss_pred EcCCcEEEEeeEEecc-cceeeeccccccccccccccccEEEEeCEEeecccEEccCceEEEEcCEEE
Confidence 3566777777776532 2222221 11234556666665554 234445556666653
No 91
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=40.67 E-value=17 Score=33.14 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 021449 34 FTVLWLAAFASVFIWQRNA 52 (312)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ 52 (312)
.++.||+.+|++..|....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (243)
T PF05279_consen 11 SFFTWFLVLALLGVWSSVA 29 (243)
T ss_pred chHHHHHHHHHHHHHHhhH
Confidence 4678999999999997764
No 92
>PLN02480 Probable pectinesterase
Probab=40.03 E-value=88 Score=30.08 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=57.5
Q ss_pred EEEeccccEEEEeeEEEcCCC---------Ceeee-cccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEec
Q 021449 216 VQIMWSSDILISNITLRDSPF---------WTLHP-YDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAIK 283 (312)
Q Consensus 216 i~~~~~~nv~I~nvti~ns~~---------~~i~i-~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iaik 283 (312)
.....+++++++||+|+|+.. -.+.+ ..++++.+.||++.+..|. .....-..+||+|...=|=|
T Consensus 126 TvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~C~IeG~VDFI--- 202 (343)
T PLN02480 126 TFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYIQGSIDFI--- 202 (343)
T ss_pred EEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEEEeCEEEeeeeEE---
Confidence 334467999999999999832 22333 4689999999999998863 34557889999996544455
Q ss_pred cCCCcCCccCCCCeecEEEEeEEEee
Q 021449 284 SGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 284 sg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+| .-..+++||++..
T Consensus 203 -----FG------~g~a~fe~C~i~s 217 (343)
T PLN02480 203 -----FG------RGRSIFHNCEIFV 217 (343)
T ss_pred -----cc------ceeEEEEccEEEE
Confidence 22 2467888888875
No 93
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=37.85 E-value=1.7e+02 Score=29.03 Aligned_cols=84 Identities=21% Similarity=0.142 Sum_probs=33.3
Q ss_pred EEeeEEEcCCCCeeeecccccEEEEeEEEeeCCCC---C----CcccEEEEeeEEec-----CCceEEeccCCCcCC-cc
Q 021449 226 ISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLF---D----SCEDMVIEDCYISV-----GDDAIAIKSGWDQYG-IA 292 (312)
Q Consensus 226 I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~d~---~----~s~nV~I~n~~i~~-----gDD~Iaiksg~~~~g-~~ 292 (312)
|++=+|++|.+ .+.+-+..+-+|++..+...... . -.++=+|.|++|.. -.-++++-.|...-- .+
T Consensus 227 ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~ 305 (425)
T PF14592_consen 227 IRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNR 305 (425)
T ss_dssp EES-EEES-SS-EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTST
T ss_pred EeccEEEeccc-eEEEecCCCceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCccc
Confidence 44444444432 34444555555555555554311 1 12444566666632 123344322221111 11
Q ss_pred CCCCeecEEEEeEEEeecC
Q 021449 293 YGRPSMNILIRNLVVRSMV 311 (312)
Q Consensus 293 ~g~~~~nI~I~n~~v~~~~ 311 (312)
+. .++|++|.++++-++.
T Consensus 306 y~-qv~nv~I~~NT~In~~ 323 (425)
T PF14592_consen 306 YD-QVKNVLIANNTFINCK 323 (425)
T ss_dssp T----BSEEEES-EEES-S
T ss_pred cc-ccceeEEecceEEccC
Confidence 22 5799999999998876
No 94
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.91 E-value=42 Score=26.01 Aligned_cols=16 Identities=38% Similarity=0.326 Sum_probs=6.9
Q ss_pred hhhhHHHHHHHHHHHH
Q 021449 28 SSHKTLFTVLWLAAFA 43 (312)
Q Consensus 28 ~~~~~~~~~~~~~~~~ 43 (312)
+|.+.|||++.|++++
T Consensus 2 aSK~~llL~l~LA~lL 17 (95)
T PF07172_consen 2 ASKAFLLLGLLLAALL 17 (95)
T ss_pred chhHHHHHHHHHHHHH
Confidence 3444444444443333
No 95
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=32.62 E-value=96 Score=29.11 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=49.4
Q ss_pred EeccccEEEEeeEEEcCCCC------eeeecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEeccCCCcC
Q 021449 218 IMWSSDILISNITLRDSPFW------TLHPYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAIKSGWDQY 289 (312)
Q Consensus 218 ~~~~~nv~I~nvti~ns~~~------~i~i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iaiksg~~~~ 289 (312)
....+++.++||+|+|+... .+. ..++.+.+.+|++.+..|. ....+..++||+|...-|=| +
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~QDTL~~~~~r~y~~~c~IeG~vDFI--------f 153 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGYQDTLYANGGRQYFKNCYIEGNVDFI--------F 153 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-STT-EEE-SSEEEEES-EEEESEEEE--------E
T ss_pred cccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEccccceeeeccceeEEEeeEEEecCcEE--------E
Confidence 44689999999999997432 233 3578899999999988863 23456888999998766666 1
Q ss_pred CccCCCCeecEEEEeEEEee
Q 021449 290 GIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 290 g~~~g~~~~nI~I~n~~v~~ 309 (312)
| .-...++||++..
T Consensus 154 G------~~~a~f~~c~i~~ 167 (298)
T PF01095_consen 154 G------NGTAVFENCTIHS 167 (298)
T ss_dssp E------SSEEEEES-EEEE
T ss_pred C------CeeEEeeeeEEEE
Confidence 1 1345677887764
No 96
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=32.35 E-value=60 Score=29.08 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=36.7
Q ss_pred CceEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC-C---CCCcc-cEEEEeeEEecC
Q 021449 213 GPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ-L---FDSCE-DMVIEDCYISVG 276 (312)
Q Consensus 213 ~~~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~-d---~~~s~-nV~I~n~~i~~g 276 (312)
.++|.++ +..+|+|+.|-....-+||... +.+|+|+....-. | +.+.. .++|.++-....
T Consensus 54 ~~vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A 118 (215)
T PF03211_consen 54 DPVFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNA 118 (215)
T ss_dssp --SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEE
T ss_pred ceEEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCC
Confidence 3466665 7889999998666667888876 7788887766543 2 22222 677777665433
No 97
>PLN02671 pectinesterase
Probab=31.56 E-value=4.9e+02 Score=25.22 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=54.6
Q ss_pred eEEEeccccEEEEeeEEEcCCCC----------eeeecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEe
Q 021449 215 LVQIMWSSDILISNITLRDSPFW----------TLHPYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAI 282 (312)
Q Consensus 215 ~i~~~~~~nv~I~nvti~ns~~~----------~i~i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iai 282 (312)
.-....++++..+||+|+|.... .+. ...+.+.+.||++.+..|. .....-..+||+|...=|=|
T Consensus 147 aTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALr-v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~CyIeG~VDFI-- 223 (359)
T PLN02671 147 ASVTIESDYFCATGITFENTVVAEPGGQGMQAVALR-ISGDKAFFYKVRVLGAQDTLLDETGSHYFYQCYIQGSVDFI-- 223 (359)
T ss_pred EEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEE-EcCccEEEEcceEeccccccEeCCCcEEEEecEEEEeccEE--
Confidence 33455679999999999998311 122 3578999999999988764 34456889999996544455
Q ss_pred ccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 283 KSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 283 ksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+| .-..+++||++..
T Consensus 224 ------FG------~g~A~Fe~C~I~s 238 (359)
T PLN02671 224 ------FG------NAKSLYQDCVIQS 238 (359)
T ss_pred ------ec------ceeEEEeccEEEE
Confidence 11 2346777777764
No 98
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=31.09 E-value=75 Score=24.54 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=20.0
Q ss_pred eeccccC-CCccchHHHHHHHHHHHHhhccCCCcEEEeCCCceee
Q 021449 80 TDFGGVG-DGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLT 123 (312)
Q Consensus 80 ~dfGA~g-Dg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~ 123 (312)
.|||..+ +.-...-..|++||..-- ....+| ..|||.-
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi----~~~~tv--~~GtYr~ 48 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHI----KNPDTV--EKGTYRR 48 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHH----H-TT-E--E--BETT
T ss_pred cccCcccCCCChhhHHHHHHHHHHHh----CCCCeE--eccceec
Confidence 4788887 444455678999999852 345664 4999973
No 99
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=26.89 E-value=64 Score=28.19 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHHhhccCCCcEEEeCCCce
Q 021449 91 LNTEAFQRAVYAISKLGKKGGGQLNVPPGRW 121 (312)
Q Consensus 91 ddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtY 121 (312)
.+.+++++|.+.+ +.|+..++||+|+-
T Consensus 83 ~~~~~~~~~~~~L----~~G~~l~IFPEGtr 109 (210)
T cd07986 83 KNRESLREALRHL----KNGGALIIFPAGRV 109 (210)
T ss_pred hhHHHHHHHHHHH----hCCCEEEEECCccc
Confidence 4567788888877 35778889999984
No 100
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=26.30 E-value=72 Score=24.66 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=22.3
Q ss_pred CCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeC
Q 021449 73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVP 117 (312)
Q Consensus 73 ~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP 117 (312)
++..+.++.| -.||+.....+++.+|++ +.|.|+|+-|
T Consensus 47 ~~r~~~~~a~-~~G~dy~~~~~~L~~al~------~~G~G~LvHP 84 (93)
T PF07157_consen 47 KARRIRVTAF-FVGDDYEAQRDALIAALE------APGPGELVHP 84 (93)
T ss_pred CCcEEEEEEE-EECCcHHHHHHHHHHHHc------CCCCeEEecC
Confidence 4456666665 345544444444444444 4588999888
No 101
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=24.74 E-value=2.5e+02 Score=22.50 Aligned_cols=36 Identities=11% Similarity=0.283 Sum_probs=21.5
Q ss_pred CCcEEEeCCCceeeccccccccceEEecCCceEEEeec
Q 021449 110 GGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIEN 147 (312)
Q Consensus 110 gGgtv~iP~GtYl~~~i~L~S~~tL~l~~ga~i~~~~d 147 (312)
.|..|+||+|..++-....+.--.|.+ +++|.+.++
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~~l~~l~I--~G~L~f~~~ 46 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTPKLGSLII--GGTLIFDDD 46 (125)
T ss_pred CCCEEEECCCCEEEEcCCChheeEEEE--EEEEEEccC
Confidence 588999999976533222222223444 577777653
No 102
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=24.28 E-value=2.4e+02 Score=28.94 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=56.8
Q ss_pred eEEEeccccEEEEeeEEEcCCCC----eee-ecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEeccCCC
Q 021449 215 LVQIMWSSDILISNITLRDSPFW----TLH-PYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAIKSGWD 287 (312)
Q Consensus 215 ~i~~~~~~nv~I~nvti~ns~~~----~i~-i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iaiksg~~ 287 (312)
.-.....+++..+||+|+|...- .+. -..++.+.+.||+|.+..|. ..+.....+||+|...=|=|
T Consensus 323 aT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFI------- 395 (553)
T PLN02708 323 ATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFI------- 395 (553)
T ss_pred EEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEE-------
Confidence 33445689999999999998642 121 23588999999999998863 34456788999996544555
Q ss_pred cCCccCCCCeecEEEEeEEEee
Q 021449 288 QYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 288 ~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+| .-..+++||.+..
T Consensus 396 -FG------~a~avfq~c~i~~ 410 (553)
T PLN02708 396 -FG------NSAAVFQDCAILI 410 (553)
T ss_pred -ec------CceEEEEccEEEE
Confidence 22 2467788888763
No 103
>PLN02432 putative pectinesterase
Probab=23.96 E-value=2.2e+02 Score=26.71 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=54.5
Q ss_pred EeccccEEEEeeEEEcCCCCe----eeecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEeccCCCcCCc
Q 021449 218 IMWSSDILISNITLRDSPFWT----LHPYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAIKSGWDQYGI 291 (312)
Q Consensus 218 ~~~~~nv~I~nvti~ns~~~~----i~i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~ 291 (312)
...++++..+||+|+|...-. -.....+...+.+|.+.+..|. .....-..+||+|...=|=| +|
T Consensus 90 ~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~VDFI--------FG- 160 (293)
T PLN02432 90 SVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFI--------CG- 160 (293)
T ss_pred EEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEECCCCEEEEeCEEEecccEE--------ec-
Confidence 456799999999999974311 1223588999999999988763 23457889999996554555 11
Q ss_pred cCCCCeecEEEEeEEEee
Q 021449 292 AYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 292 ~~g~~~~nI~I~n~~v~~ 309 (312)
.-...+++|.+..
T Consensus 161 -----~g~a~Fe~c~i~s 173 (293)
T PLN02432 161 -----NAASLFEKCHLHS 173 (293)
T ss_pred -----CceEEEEeeEEEE
Confidence 2346788888764
No 104
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=23.06 E-value=2.3e+02 Score=29.03 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=55.8
Q ss_pred EEeccccEEEEeeEEEcCCCCe----e-eecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEeccCCCcC
Q 021449 217 QIMWSSDILISNITLRDSPFWT----L-HPYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAIKSGWDQY 289 (312)
Q Consensus 217 ~~~~~~nv~I~nvti~ns~~~~----i-~i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iaiksg~~~~ 289 (312)
.....+++..+||+|+|..... + .-..++.+.+.+|+|.+..|. ..+..-..+||+|...=|=| +
T Consensus 312 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI--------F 383 (541)
T PLN02416 312 LAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYI--------F 383 (541)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeecccee--------e
Confidence 3445899999999999985431 1 123588999999999998863 34567799999996544455 2
Q ss_pred CccCCCCeecEEEEeEEEee
Q 021449 290 GIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 290 g~~~g~~~~nI~I~n~~v~~ 309 (312)
| .-..+++||.+..
T Consensus 384 G------~a~avfq~c~i~~ 397 (541)
T PLN02416 384 G------NAAVVFQACNIVS 397 (541)
T ss_pred c------cceEEEeccEEEE
Confidence 2 2456777777754
No 105
>PLN02665 pectinesterase family protein
Probab=22.80 E-value=2.8e+02 Score=26.96 Aligned_cols=80 Identities=23% Similarity=0.236 Sum_probs=55.6
Q ss_pred eEEEeccccEEEEeeEEEcCCCC-----------eeeecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEE
Q 021449 215 LVQIMWSSDILISNITLRDSPFW-----------TLHPYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIA 281 (312)
Q Consensus 215 ~i~~~~~~nv~I~nvti~ns~~~-----------~i~i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Ia 281 (312)
.-....++++..+||+|+|+... .+. ...+...+.||++.+..|. +....-..+||+|...=|=|
T Consensus 147 aTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~-v~gDka~f~~C~f~G~QDTL~~~~gr~yf~~CyIeG~VDFI- 224 (366)
T PLN02665 147 ATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMR-ISGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFI- 224 (366)
T ss_pred EEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEE-EcCCcEEEEcceeccccceeEeCCCCEEEEeeEEeecccee-
Confidence 34556789999999999997421 122 3478899999999988763 24457889999997554555
Q ss_pred eccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 282 IKSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 282 iksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+| .-..+++||++..
T Consensus 225 -------FG------~g~a~fe~C~i~s 239 (366)
T PLN02665 225 -------FG------SGKSLYLNTELHV 239 (366)
T ss_pred -------cc------ccceeeEccEEEE
Confidence 11 2345777777764
No 106
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=22.47 E-value=89 Score=26.77 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=23.0
Q ss_pred cchHHHHHHHHHHHHhhccCCCcEEEeCCCceee
Q 021449 90 TLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLT 123 (312)
Q Consensus 90 tddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~ 123 (312)
..|.+++.++++...+ ...+...++||+||...
T Consensus 85 ~~d~~~i~~~~~~l~~-~~~~~~lviFPEGTr~~ 117 (193)
T cd07990 85 EKDEKTIKRQLKRLKD-SPEPFWLLIFPEGTRFT 117 (193)
T ss_pred HHhHHHHHHHHHHHhc-CCCCcEEEEeCcccCCC
Confidence 3467889999988732 11256789999998643
No 107
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=22.27 E-value=3.4e+02 Score=28.64 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEeCCCceeecccccc---ccceEEe
Q 021449 92 NTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT---SHMTLFL 136 (312)
Q Consensus 92 dT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~---S~~tL~l 136 (312)
|-.-||+||+++.+ ....--+|+|-+|+|.-. +.++ .+++|..
T Consensus 261 ~f~TIq~Av~a~P~-~~~~r~vI~Ik~GvY~E~-V~I~~~k~~i~l~G 306 (670)
T PLN02217 261 QYKTINEALNFVPK-KKNTTFVVHIKAGIYKEY-VQVNRSMTHLVFIG 306 (670)
T ss_pred CccCHHHHHHhccc-cCCceEEEEEeCCceEEE-EEEcCCCCcEEEEe
Confidence 46689999999853 122345899999999743 3332 3455544
No 108
>PLN02682 pectinesterase family protein
Probab=22.08 E-value=3.5e+02 Score=26.31 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=57.6
Q ss_pred eEEEeccccEEEEeeEEEcCCCC---------ee-eecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEe
Q 021449 215 LVQIMWSSDILISNITLRDSPFW---------TL-HPYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAI 282 (312)
Q Consensus 215 ~i~~~~~~nv~I~nvti~ns~~~---------~i-~i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iai 282 (312)
.-....++++..+||+|+|+... .+ ....++...+.||++.+..|. .....-..+||+|...=|=|
T Consensus 156 AT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFI-- 233 (369)
T PLN02682 156 ATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEGSVDFI-- 233 (369)
T ss_pred eEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECCCCEEEEeeEEcccccEE--
Confidence 44556788999999999997421 11 123589999999999998874 34457899999997554555
Q ss_pred ccCCCcCCccCCCCeecEEEEeEEEee
Q 021449 283 KSGWDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 283 ksg~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+| .-..+++||++..
T Consensus 234 ------FG------~g~a~Fe~C~I~s 248 (369)
T PLN02682 234 ------FG------NGLSLYEGCHLHA 248 (369)
T ss_pred ------ec------CceEEEEccEEEE
Confidence 22 2467788888864
No 109
>PLN02176 putative pectinesterase
Probab=21.84 E-value=3.9e+02 Score=25.70 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=54.9
Q ss_pred eccccEEEEeeEEEcCCCC----------ee-eecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEeccC
Q 021449 219 MWSSDILISNITLRDSPFW----------TL-HPYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAIKSG 285 (312)
Q Consensus 219 ~~~~nv~I~nvti~ns~~~----------~i-~i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iaiksg 285 (312)
..++++..+||+|+|.... .+ .....+...+.||++.+..|. .....-..+||+|...=|=|
T Consensus 119 v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~gRqyf~~CyIeG~VDFI----- 193 (340)
T PLN02176 119 SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGKGRHYYKRCVISGGIDFI----- 193 (340)
T ss_pred EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCCcCEEEEecEEEecccEE-----
Confidence 4689999999999997421 11 223578999999999987763 34567889999997554555
Q ss_pred CCcCCccCCCCeecEEEEeEEEee
Q 021449 286 WDQYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 286 ~~~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+| .-..+++||++..
T Consensus 194 ---FG------~a~a~Fe~C~I~s 208 (340)
T PLN02176 194 ---FG------YAQSIFEGCTLKL 208 (340)
T ss_pred ---ec------CceEEEeccEEEE
Confidence 11 2457888888864
No 110
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=21.21 E-value=2.9e+02 Score=28.19 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=55.5
Q ss_pred EEEeccccEEEEeeEEEcCCCC--e--ee-ecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEeccCCCc
Q 021449 216 VQIMWSSDILISNITLRDSPFW--T--LH-PYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAIKSGWDQ 288 (312)
Q Consensus 216 i~~~~~~nv~I~nvti~ns~~~--~--i~-i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iaiksg~~~ 288 (312)
-.....+++..+||+|+|+..- + +. -..++...+.+|.+.+..|. .....-..+||+|...=|=|
T Consensus 287 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFI-------- 358 (520)
T PLN02201 287 TFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFI-------- 358 (520)
T ss_pred EEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEE--------
Confidence 3445689999999999998532 1 11 23578899999999988863 34456788999996544555
Q ss_pred CCccCCCCeecEEEEeEEEee
Q 021449 289 YGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 289 ~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+| .-..+++||.+..
T Consensus 359 FG------~a~avf~~C~i~~ 373 (520)
T PLN02201 359 FG------DATAVFQNCQILA 373 (520)
T ss_pred ec------CceEEEEccEEEE
Confidence 22 2457788887764
No 111
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=21.19 E-value=3.2e+02 Score=27.97 Aligned_cols=81 Identities=10% Similarity=0.082 Sum_probs=56.7
Q ss_pred eEEEeccccEEEEeeEEEcCCCC--e--e-eecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEeccCCC
Q 021449 215 LVQIMWSSDILISNITLRDSPFW--T--L-HPYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAIKSGWD 287 (312)
Q Consensus 215 ~i~~~~~~nv~I~nvti~ns~~~--~--i-~i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iaiksg~~ 287 (312)
.-.....+++..+||+|+|...- + + .-..++...+.+|++.+..|. .....-..++|+|...=|=|
T Consensus 306 aTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFI------- 378 (529)
T PLN02170 306 ATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFI------- 378 (529)
T ss_pred eEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEcccccee-------
Confidence 44556789999999999998432 1 1 123588999999999998863 34556788999996544455
Q ss_pred cCCccCCCCeecEEEEeEEEee
Q 021449 288 QYGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 288 ~~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+| .-..+++||.+..
T Consensus 379 -FG------~a~avFq~C~I~~ 393 (529)
T PLN02170 379 -FG------NSAVVFQSCNIAA 393 (529)
T ss_pred -cc------cceEEEeccEEEE
Confidence 22 2456777777754
No 112
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=21.08 E-value=2.4e+02 Score=28.87 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=55.8
Q ss_pred EEEeccccEEEEeeEEEcCCCC----eee-ecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEeccCCCc
Q 021449 216 VQIMWSSDILISNITLRDSPFW----TLH-PYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAIKSGWDQ 288 (312)
Q Consensus 216 i~~~~~~nv~I~nvti~ns~~~----~i~-i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iaiksg~~~ 288 (312)
-.....+++..+||+|+|...- .+. -..++...+.+|.|.+..|. .....-..+||+|...=|=|
T Consensus 299 T~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFI-------- 370 (530)
T PLN02933 299 TVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFI-------- 370 (530)
T ss_pred EEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEeccccee--------
Confidence 3456789999999999998542 122 23588999999999998863 34556799999996544454
Q ss_pred CCccCCCCeecEEEEeEEEee
Q 021449 289 YGIAYGRPSMNILIRNLVVRS 309 (312)
Q Consensus 289 ~g~~~g~~~~nI~I~n~~v~~ 309 (312)
+| .-..+++||.+..
T Consensus 371 FG------~a~avFq~C~i~~ 385 (530)
T PLN02933 371 FG------NAAVVFQNCSLYA 385 (530)
T ss_pred cc------CceEEEeccEEEE
Confidence 12 2346677777653
No 113
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.99 E-value=1.8e+02 Score=24.44 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhccCC-CcEEEeCCC--ceeeccccccccceEEecCC
Q 021449 96 FQRAVYAISKLGKKG-GGQLNVPPG--RWLTAPFNLTSHMTLFLADD 139 (312)
Q Consensus 96 iq~AI~a~~~~~~~g-Ggtv~iP~G--tYl~~~i~L~S~~tL~l~~g 139 (312)
|+.|++.+......+ |..++||-| -|.-+.+...+.+.+.+..|
T Consensus 39 ~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg 85 (145)
T COG1730 39 LQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSG 85 (145)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCc
Confidence 445555543333323 458888865 68877777777777766443
No 114
>PLN02197 pectinesterase
Probab=20.01 E-value=3.1e+02 Score=28.42 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=54.5
Q ss_pred EEeccccEEEEeeEEEcCCCC----ee-eecccccEEEEeEEEeeCCCC--CCcccEEEEeeEEecCCceEEeccCCCcC
Q 021449 217 QIMWSSDILISNITLRDSPFW----TL-HPYDCKNVTIRNAFISKIQLF--DSCEDMVIEDCYISVGDDAIAIKSGWDQY 289 (312)
Q Consensus 217 ~~~~~~nv~I~nvti~ns~~~----~i-~i~~~~nV~I~n~~I~~~~d~--~~s~nV~I~n~~i~~gDD~Iaiksg~~~~ 289 (312)
.....+++..+||+|+|+... .+ .-..++...+.+|+|.+..|. .....-..+||+|...=|-| +
T Consensus 359 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFI--------F 430 (588)
T PLN02197 359 VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFI--------F 430 (588)
T ss_pred EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEeccccc--------c
Confidence 445689999999999997542 12 223589999999999998863 34556789999996443444 2
Q ss_pred CccCCCCeecEEEEeEEEe
Q 021449 290 GIAYGRPSMNILIRNLVVR 308 (312)
Q Consensus 290 g~~~g~~~~nI~I~n~~v~ 308 (312)
| .-..+++||.+.
T Consensus 431 G------~a~avfq~C~i~ 443 (588)
T PLN02197 431 G------KSATVIQNSLIV 443 (588)
T ss_pred c------ceeeeeecCEEE
Confidence 2 233677777765
Done!