Query 021451
Match_columns 312
No_of_seqs 127 out of 1228
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13932 stationary phase surv 100.0 7.8E-77 1.7E-81 552.0 28.7 250 12-300 3-254 (257)
2 PRK13935 stationary phase surv 100.0 2E-76 4.3E-81 548.2 27.6 248 15-301 1-250 (253)
3 PRK13933 stationary phase surv 100.0 5.1E-76 1.1E-80 546.0 28.4 249 15-301 1-252 (253)
4 PRK00346 surE 5'(3')-nucleotid 100.0 1.6E-75 3.4E-80 542.2 27.9 248 15-300 1-249 (250)
5 COG0496 SurE Predicted acid ph 100.0 7.4E-76 1.6E-80 541.5 24.9 248 15-300 1-251 (252)
6 PRK13931 stationary phase surv 100.0 2.1E-75 4.5E-80 544.3 27.7 254 15-300 1-260 (261)
7 TIGR00087 surE 5'/3'-nucleotid 100.0 1.2E-72 2.5E-77 521.8 26.5 240 15-288 1-244 (244)
8 PRK13934 stationary phase surv 100.0 2.1E-72 4.5E-77 523.8 27.3 236 15-290 1-244 (266)
9 PF01975 SurE: Survival protei 100.0 1.5E-64 3.3E-69 454.2 17.9 189 15-210 1-195 (196)
10 PF04007 DUF354: Protein of un 88.2 1.7 3.7E-05 42.6 7.4 103 15-143 1-110 (335)
11 cd03784 GT1_Gtf_like This fami 85.6 1.5 3.3E-05 42.4 5.5 38 15-53 1-39 (401)
12 PLN02846 digalactosyldiacylgly 85.6 4.7 0.0001 41.2 9.2 40 13-53 3-48 (462)
13 PF14336 DUF4392: Domain of un 79.4 3.1 6.6E-05 39.9 4.9 108 28-144 63-183 (291)
14 cd03814 GT1_like_2 This family 78.6 29 0.00064 31.6 11.0 27 27-54 17-43 (364)
15 TIGR01133 murG undecaprenyldip 75.2 20 0.00044 33.5 9.1 36 16-52 2-38 (348)
16 TIGR00661 MJ1255 conserved hyp 74.1 13 0.00029 35.1 7.6 32 100-145 91-122 (321)
17 PF07075 DUF1343: Protein of u 72.7 15 0.00032 36.6 7.7 111 17-144 2-119 (365)
18 TIGR01426 MGT glycosyltransfer 71.8 7.6 0.00016 37.7 5.5 24 30-54 12-35 (392)
19 cd03785 GT1_MurG MurG is an N- 71.7 27 0.00059 32.6 9.1 23 29-52 15-37 (350)
20 PF13439 Glyco_transf_4: Glyco 70.4 8 0.00017 31.6 4.6 42 17-59 1-46 (177)
21 PRK10307 putative glycosyl tra 68.9 8 0.00017 37.6 4.9 36 15-51 1-41 (412)
22 PF04007 DUF354: Protein of un 67.4 5.4 0.00012 39.1 3.3 18 123-142 256-273 (335)
23 cd03802 GT1_AviGT4_like This f 66.3 12 0.00026 34.3 5.4 39 15-54 1-48 (335)
24 TIGR01303 IMP_DH_rel_1 IMP deh 58.9 47 0.001 34.1 8.5 104 29-143 225-335 (475)
25 PRK15405 ethanolamine utilizat 55.3 67 0.0015 29.8 8.0 102 28-134 46-201 (217)
26 cd03820 GT1_amsD_like This fam 53.3 85 0.0018 27.9 8.4 38 16-54 1-42 (348)
27 COG0726 CDA1 Predicted xylanas 53.0 24 0.00051 31.3 4.7 31 13-43 63-93 (267)
28 cd03825 GT1_wcfI_like This fam 52.9 15 0.00032 34.0 3.5 38 15-53 1-41 (365)
29 PF13579 Glyco_trans_4_4: Glyc 46.4 22 0.00047 28.4 3.1 96 30-144 7-104 (160)
30 cd03805 GT1_ALG2_like This fam 45.6 25 0.00054 33.4 3.8 37 15-52 1-40 (392)
31 TIGR00045 glycerate kinase. Th 43.5 1.2E+02 0.0026 30.4 8.3 43 101-145 282-324 (375)
32 PRK12446 undecaprenyldiphospho 43.1 1.3E+02 0.0027 29.3 8.3 36 98-144 87-122 (352)
33 PRK10342 glycerate kinase I; P 42.0 1.4E+02 0.0031 29.9 8.6 43 101-145 283-325 (381)
34 PF03033 Glyco_transf_28: Glyc 41.9 22 0.00048 28.8 2.5 22 31-53 16-37 (139)
35 PLN02871 UDP-sulfoquinovose:DA 39.7 54 0.0012 32.7 5.4 41 12-53 56-102 (465)
36 PF01205 UPF0029: Uncharacteri 39.5 37 0.00081 28.0 3.4 32 17-49 50-83 (110)
37 COG1817 Uncharacterized protei 38.0 22 0.00047 35.0 2.1 21 122-144 259-279 (346)
38 PF02595 Gly_kinase: Glycerate 37.1 55 0.0012 32.7 4.8 61 81-145 265-325 (377)
39 TIGR01918 various_sel_PB selen 37.0 40 0.00088 34.3 3.8 56 85-144 60-115 (431)
40 TIGR01917 gly_red_sel_B glycin 36.8 41 0.00088 34.3 3.8 55 86-144 61-115 (431)
41 PRK09932 glycerate kinase II; 36.5 1.8E+02 0.0039 29.2 8.3 43 101-145 283-325 (381)
42 PF13477 Glyco_trans_4_2: Glyc 36.5 50 0.0011 26.5 3.8 33 17-53 3-35 (139)
43 PRK15415 propanediol utilizati 36.1 36 0.00078 32.5 3.2 56 81-136 185-243 (266)
44 TIGR03568 NeuC_NnaA UDP-N-acet 35.1 1.6E+02 0.0034 28.8 7.6 52 85-146 73-127 (365)
45 PRK06849 hypothetical protein; 34.6 59 0.0013 31.7 4.6 35 13-51 3-37 (389)
46 cd06167 LabA_like LabA_like pr 34.0 65 0.0014 26.6 4.2 29 17-51 104-132 (149)
47 COG1929 Glycerate kinase [Carb 33.3 52 0.0011 32.8 3.9 43 101-145 283-325 (378)
48 PRK06843 inosine 5-monophospha 33.1 1.5E+02 0.0033 30.0 7.2 103 30-143 154-263 (404)
49 cd03141 GATase1_Hsp31_like Typ 31.9 67 0.0015 29.1 4.2 24 30-54 25-48 (221)
50 cd03817 GT1_UGDG_like This fam 31.7 66 0.0014 29.1 4.1 28 26-54 16-43 (374)
51 TIGR01441 GPR GPR endopeptidas 30.9 1.1E+02 0.0025 30.4 5.7 73 81-174 156-251 (358)
52 COG1926 Predicted phosphoribos 30.5 72 0.0016 29.6 4.1 69 14-96 124-193 (220)
53 COG2065 PyrR Pyrimidine operon 30.3 32 0.0007 30.7 1.8 27 118-145 103-131 (179)
54 PRK12311 rpsB 30S ribosomal pr 30.3 60 0.0013 31.9 3.8 32 100-143 150-182 (326)
55 PRK02858 germination protease; 29.8 1.2E+02 0.0026 30.3 5.7 73 81-174 166-261 (369)
56 cd03798 GT1_wlbH_like This fam 29.4 4.1E+02 0.0088 23.6 9.4 29 28-57 18-46 (377)
57 PF00381 PTS-HPr: PTS HPr comp 29.2 75 0.0016 24.2 3.5 33 16-49 5-37 (84)
58 PRK05772 translation initiatio 28.8 2E+02 0.0043 28.7 7.1 98 31-143 190-287 (363)
59 PRK00726 murG undecaprenyldiph 28.7 64 0.0014 30.5 3.7 37 15-52 2-39 (357)
60 PF10841 DUF2644: Protein of u 28.7 22 0.00047 26.4 0.3 24 18-41 3-27 (60)
61 PRK08334 translation initiatio 28.0 82 0.0018 31.3 4.3 43 101-143 237-279 (356)
62 PF07355 GRDB: Glycine/sarcosi 27.7 72 0.0016 31.6 3.8 55 84-142 63-117 (349)
63 TIGR02884 spore_pdaA delta-lac 27.3 1E+02 0.0022 28.0 4.5 34 9-42 31-64 (224)
64 PRK06036 translation initiatio 27.0 2.2E+02 0.0047 28.1 7.0 97 30-143 169-266 (339)
65 PF01936 NYN: NYN domain; Int 25.8 57 0.0012 26.6 2.4 37 16-61 99-135 (146)
66 PF04230 PS_pyruv_trans: Polys 25.8 56 0.0012 28.6 2.5 26 120-145 260-285 (286)
67 PRK11249 katE hydroperoxidase 25.6 2.3E+02 0.0051 31.0 7.5 39 13-52 596-634 (752)
68 PF01008 IF-2B: Initiation fac 25.4 60 0.0013 30.3 2.8 111 17-146 110-220 (282)
69 PF13528 Glyco_trans_1_3: Glyc 25.1 78 0.0017 29.3 3.5 32 101-146 93-124 (318)
70 PRK08535 translation initiatio 24.8 86 0.0019 30.2 3.8 43 102-144 188-230 (310)
71 TIGR03449 mycothiol_MshA UDP-N 24.5 1E+02 0.0022 29.6 4.2 24 28-52 24-47 (405)
72 cd03816 GT1_ALG1_like This fam 24.4 93 0.002 30.6 4.0 36 14-51 5-40 (415)
73 TIGR02764 spore_ybaN_pdaB poly 24.4 96 0.0021 27.0 3.7 31 12-42 3-33 (191)
74 cd03794 GT1_wbuB_like This fam 24.0 1.2E+02 0.0026 27.4 4.4 27 27-54 17-43 (394)
75 PF08323 Glyco_transf_5: Starc 24.0 75 0.0016 29.2 3.1 22 30-52 22-43 (245)
76 cd03796 GT1_PIG-A_like This fa 23.9 1.1E+02 0.0023 29.7 4.3 25 27-52 17-41 (398)
77 PRK08335 translation initiatio 23.7 93 0.002 29.8 3.7 43 102-144 177-219 (275)
78 PRK12767 carbamoyl phosphate s 22.7 1.2E+02 0.0026 28.5 4.2 32 15-51 2-34 (326)
79 smart00368 LRR_RI Leucine rich 22.4 86 0.0019 19.1 2.2 26 13-38 2-27 (28)
80 PHA03392 egt ecdysteroid UDP-g 22.4 72 0.0016 32.9 2.9 41 12-53 18-60 (507)
81 PRK05720 mtnA methylthioribose 22.2 1.2E+02 0.0025 30.0 4.2 44 101-144 224-267 (344)
82 smart00775 LNS2 LNS2 domain. T 22.0 94 0.002 26.7 3.1 18 24-41 26-43 (157)
83 PRK06372 translation initiatio 21.9 1.2E+02 0.0026 28.7 4.0 44 102-145 151-194 (253)
84 PF11805 DUF3326: Protein of u 21.8 72 0.0016 31.4 2.5 55 84-143 231-294 (340)
85 cd03791 GT1_Glycogen_synthase_ 21.8 86 0.0019 31.0 3.2 24 30-54 22-45 (476)
86 TIGR00182 plsX fatty acid/phos 21.6 5.4E+02 0.012 25.1 8.6 73 30-109 10-90 (322)
87 cd01475 vWA_Matrilin VWA_Matri 21.5 1.3E+02 0.0029 26.9 4.2 32 15-49 111-142 (224)
88 cd03808 GT1_cap1E_like This fa 21.5 91 0.002 27.8 3.1 37 18-55 4-40 (359)
89 PRK06371 translation initiatio 21.1 1.4E+02 0.0029 29.5 4.3 44 101-144 214-257 (329)
90 PRK12342 hypothetical protein; 21.0 1.6E+02 0.0035 27.7 4.7 37 102-145 109-145 (254)
91 PRK14697 bifunctional 5'-methy 20.7 4E+02 0.0087 24.3 7.2 49 127-175 175-228 (233)
92 PRK05784 phosphoribosylamine-- 20.7 8.9E+02 0.019 24.9 10.4 33 15-53 1-35 (486)
93 PRK09864 putative peptidase; P 20.6 1.5E+02 0.0032 29.4 4.5 134 29-169 179-340 (356)
94 PF00156 Pribosyltran: Phospho 20.4 1.1E+02 0.0024 24.1 3.1 36 11-47 85-121 (125)
95 PRK03359 putative electron tra 20.0 1.2E+02 0.0027 28.5 3.7 38 102-146 112-149 (256)
No 1
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=7.8e-77 Score=552.04 Aligned_cols=250 Identities=29% Similarity=0.475 Sum_probs=219.9
Q ss_pred CCCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCC-CCeeEEecCChHHHH
Q 021451 12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCA 90 (312)
Q Consensus 12 ~~~~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~-g~~~~~v~GTPaDcV 90 (312)
.++|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++|+++++++.+ +..+|+|+|||||||
T Consensus 3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV 80 (257)
T PRK13932 3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI 80 (257)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence 567999999999999999999999999877 89999999999999999999999999998643 455899999999999
Q ss_pred HHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCCCCCcccHHHHHHHHHHHHHH
Q 021451 91 SLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAI 170 (312)
Q Consensus 91 ~~al~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l 170 (312)
++||+. +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+.... ..+|+.+++++.++++++
T Consensus 81 ~lal~~-~~~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~~----~~~~~~aa~~~~~l~~~l 155 (257)
T PRK13932 81 KVALSH-ILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTYE----NADFTYAGKFARKLARKV 155 (257)
T ss_pred HHHHHh-hcCCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccCC----cCCHHHHHHHHHHHHHHH
Confidence 999997 567799999999999999999999999999999999999999999985421 237999999999998876
Q ss_pred HHHHHhcCCCCCcEEEecCCCCC-CCCCCeEEeecccccccceeeEEeeecCCceeeeeeeecCCccccccccCCCCCCc
Q 021451 171 LAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEE 249 (312)
Q Consensus 171 ~~~~~~~~~p~~~~lNVN~P~~~-~~~~gik~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g~~ 249 (312)
+ +..+|++++||||||.++ .+.+|+|+|+||++.|.+.++++. +++|+.
T Consensus 156 ~----~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~~~~~~~~~~~~--------------------------dp~g~~ 205 (257)
T PRK13932 156 L----REGLPPDTILSVNIPNVPESDIQGVLITRQGRSRWEEDAIERH--------------------------DMYGNP 205 (257)
T ss_pred H----hcCCCCCcEEEEEeCCCCccccCCEEEeeCCCcccccceEEeE--------------------------CcCCCe
Confidence 6 346899999999999987 568999999999999987765432 377888
Q ss_pred ceeEeeeccCCCCCCCCChHHHHHCCCeeeccccCCCCCChHHHHHHHHHh
Q 021451 250 DLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWL 300 (312)
Q Consensus 250 ~~~~~~~~~~~~~~~~gtD~~al~~G~ISVTPL~~~~~t~~~~l~~~~~~~ 300 (312)
|||+.+.... .+.+++||++++++||||||||+ +++|+++.++.++.|.
T Consensus 206 yywl~~~~~~-~~~~~~tD~~al~~GyISvTPL~-~dlT~~~~l~~l~~~~ 254 (257)
T PRK13932 206 YYWLNGTLQL-LDDSLTQDEYAVRHNYVAVTPLS-CDLTNHDFLSSLEQWK 254 (257)
T ss_pred EEEECCCccC-CCCCCCChHHHHHCCcEEEecCC-cCCcChHHHHHHHhhh
Confidence 9999965321 12367999999999999999999 7999999999998874
No 2
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=2e-76 Score=548.22 Aligned_cols=248 Identities=38% Similarity=0.519 Sum_probs=217.9
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccC-CCCeeEEecCChHHHHHHh
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLG 93 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~-~g~~~~~v~GTPaDcV~~a 93 (312)
|||||||||||+||||++|+++|++. |+|+||||++||||+||+||+++|+++++++. ++..+|+|+|||+|||++|
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~la 78 (253)
T PRK13935 1 MNILVTNDDGITSPGIIILAEYLSEK--HEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVKLG 78 (253)
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHHHH
Confidence 68999999999999999999999863 59999999999999999999999999999864 3556899999999999999
Q ss_pred hhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCCCCCcccHHHHHHHHHHHHHHHHH
Q 021451 94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAE 173 (312)
Q Consensus 94 l~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~ 173 (312)
|+. +++++|||||||||+|.|+|.+|+||||||||+||+++||||||||+... ...+|+.+++++.+++++++
T Consensus 79 l~~-~~~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~----~~~~~~~aa~~~~~l~~~l~-- 151 (253)
T PRK13935 79 YDV-IMDKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSADF----ENPDYETAARFLLNFLEEFD-- 151 (253)
T ss_pred HHh-hccCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcccC----CccCHHHHHHHHHHHHHHHH--
Confidence 996 56779999999999999999999999999999999999999999998421 12379999999999988766
Q ss_pred HHhcCCCCCcEEEecCCCCC-CCCCCeEEeecccccccceeeEEeeecCCceeeeeeeecCCccccccccCCCCCCccee
Q 021451 174 IRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLL 252 (312)
Q Consensus 174 ~~~~~~p~~~~lNVN~P~~~-~~~~gik~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g~~~~~ 252 (312)
+..+|++++||||||.++ .+.+|+|+|+||++.|.+.++++. +++|+.|||
T Consensus 152 --~~~~p~~~~LNVN~P~~~~~~~~gik~tr~g~~~~~~~~~~~~--------------------------dp~g~~~yw 203 (253)
T PRK13935 152 --FSLLPPFTALNINVPSVPYGEIKGWKLTRQSRRRYNDYFEERV--------------------------DPFGNKYYW 203 (253)
T ss_pred --hcCCCCCcEEEEEeCcCChhhcCCeEEeeCCCcccCCceEEEE--------------------------CCCCCeEEE
Confidence 346899999999999987 568999999999999987775532 377888999
Q ss_pred EeeeccCCCCCCCCChHHHHHCCCeeeccccCCCCCChHHHHHHHHHhh
Q 021451 253 FRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLP 301 (312)
Q Consensus 253 ~~~~~~~~~~~~~gtD~~al~~G~ISVTPL~~~~~t~~~~l~~~~~~~~ 301 (312)
+.+.... ...+++||++++++||||||||+ +++|+++.++.+++|+.
T Consensus 204 ~~~~~~~-~~~~~~tD~~al~~G~ISVTPL~-~d~T~~~~l~~l~~~~~ 250 (253)
T PRK13935 204 MMGEIIE-DDPDDDVDYKAVREGYVSVTPIH-VFLTNEECLKKLKEVYE 250 (253)
T ss_pred ECCCccC-CCCCCCchHHHHHCCcEEEecCC-cCCcCHHHHHHHHHHhc
Confidence 9975432 12368999999999999999999 79999999999999863
No 3
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=5.1e-76 Score=546.03 Aligned_cols=249 Identities=32% Similarity=0.517 Sum_probs=218.3
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCC--CCeeEEecCChHHHHHH
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD--GVTAYAVSGTPADCASL 92 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~--g~~~~~v~GTPaDcV~~ 92 (312)
|||||||||||.||||++|+++|++. |+|+||||++||||+||++|+++|+++++++.+ +..+|+|+|||||||++
T Consensus 1 M~ILvtNDDGi~apGl~aL~~~l~~~--~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~l 78 (253)
T PRK13933 1 MNILLTNDDGINAEGINTLAELLSKY--HEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRV 78 (253)
T ss_pred CeEEEEcCCCCCChhHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHH
Confidence 68999999999999999999999863 599999999999999999999999999998644 34589999999999999
Q ss_pred hhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCCCCCcccHHHHHHHHHHHHHHHH
Q 021451 93 GVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILA 172 (312)
Q Consensus 93 al~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~ 172 (312)
||+. +++.+|||||||||+|.|+|.+++||||||||+||+++||||||||+..... ...+|+.+++++.++++++++
T Consensus 79 al~~-l~~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~~~~~--~~~~~~~a~~~~~~lv~~l~~ 155 (253)
T PRK13933 79 ALDK-LVPDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSADVKKG--KDENYKIAAKYALEVLNILKK 155 (253)
T ss_pred HHHH-hcCCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEeccCCC--CcccHHHHHHHHHHHHHHHHh
Confidence 9996 5678999999999999999999999999999999999999999999964211 123699999999999987763
Q ss_pred HHHhcCCCCCcEEEecCCCCC-CCCCCeEEeecccccccceeeEEeeecCCceeeeeeeecCCccccccccCCCCCCcce
Q 021451 173 EIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDL 251 (312)
Q Consensus 173 ~~~~~~~p~~~~lNVN~P~~~-~~~~gik~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g~~~~ 251 (312)
..+|++++||||||.++ .+.+|+|+|+||++.|.+.++++. +++|+.||
T Consensus 156 ----~~~p~~~~lNvNiP~~~~~~~~g~k~t~~g~r~y~~~~~~~~--------------------------dp~g~~~y 205 (253)
T PRK13933 156 ----EDLKNDVVLNLNVPFCSEEEIKGIKVCKVGNKTFNTYFSEEI--------------------------DEEGNKVY 205 (253)
T ss_pred ----cCCCCCcEEEEecCCCchhhcCCeEEEeCCccccCCceEEEE--------------------------CCCCCeEE
Confidence 46899999999999987 578999999999999987775532 37888999
Q ss_pred eEeeeccCCCCCCCCChHHHHHCCCeeeccccCCCCCChHHHHHHHHHhh
Q 021451 252 LFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLP 301 (312)
Q Consensus 252 ~~~~~~~~~~~~~~gtD~~al~~G~ISVTPL~~~~~t~~~~l~~~~~~~~ 301 (312)
|+.+... ...+++||++++++||||||||+ +++|+++.++.++.|+.
T Consensus 206 wl~g~~~--~~~~~~tD~~a~~~g~iSVTPl~-~dlT~~~~l~~l~~~~~ 252 (253)
T PRK13933 206 KLEGDIN--KDIYEGTDVYYIRQGYVTLTPLH-YDLTNFKILEEVEKLFL 252 (253)
T ss_pred EEcCCcc--CCCCCCCcHHHHHCCcEEEEccC-cCCcChHHHHHHHHHhh
Confidence 9997532 22358999999999999999999 79999999999998853
No 4
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=100.00 E-value=1.6e-75 Score=542.16 Aligned_cols=248 Identities=35% Similarity=0.557 Sum_probs=216.7
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhh
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (312)
|||||||||||+||||++|+++|++. |+|+||||++||||+||++|+++|+++++++ ...|+|+|||||||++||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~---~~~~~v~GTPaDcV~~gl 75 (250)
T PRK00346 1 MRILLTNDDGIHAPGIRALAEALREL--ADVTVVAPDRERSGASHSLTLTRPLRVEKVD---NGFYAVDGTPTDCVHLAL 75 (250)
T ss_pred CeEEEECCCCCCChhHHHHHHHHHhC--CCEEEEeCCCCCcCCcccccCCCCeEEEEec---CCeEEECCcHHHHHHHHH
Confidence 68999999999999999999999986 4999999999999999999999999999975 236999999999999999
Q ss_pred hccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 021451 95 SQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEI 174 (312)
Q Consensus 95 ~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~ 174 (312)
+. +++++|||||||||+|.|+|.+|+||||||||+||+++||||||||+..........+|+.+++++.++++++++
T Consensus 76 ~~-l~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~~~~~~~~~~~~a~~~~~~li~~l~~-- 152 (250)
T PRK00346 76 NG-LLDPKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLAVSEGSRGWRDFETAAKVARELVRKLLE-- 152 (250)
T ss_pred Hh-hccCCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecccccccCchhhHHHHHHHHHHHHHHHHh--
Confidence 96 667799999999999999999999999999999999999999999996421111223699999999999988774
Q ss_pred HhcCCCCCcEEEecCCCCC-CCCCCeEEeecccccccceeeEEeeecCCceeeeeeeecCCccccccccCCCCCCcceeE
Q 021451 175 RNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLF 253 (312)
Q Consensus 175 ~~~~~p~~~~lNVN~P~~~-~~~~gik~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g~~~~~~ 253 (312)
..+|++++||||||.++ .+.+|+|+|+||++.|.+.++++. +++|+.|||+
T Consensus 153 --~~~p~~~~lNvN~P~~~~~~~~g~~~t~~g~~~~~~~~~~~~--------------------------d~~g~~~yw~ 204 (250)
T PRK00346 153 --KPLPPGTLLNVNVPDLPPEEIKGIRVTRLGKRHYAEEVIKRV--------------------------DPRGRPYYWI 204 (250)
T ss_pred --cCCCCCcEEEEEeCCCCcccCCCEEEEeCCCccccCceEEEE--------------------------CcCCCeEEEE
Confidence 45889999999999976 578999999999999887765432 3778889999
Q ss_pred eeeccCCCCCCCCChHHHHHCCCeeeccccCCCCCChHHHHHHHHHh
Q 021451 254 RREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWL 300 (312)
Q Consensus 254 ~~~~~~~~~~~~gtD~~al~~G~ISVTPL~~~~~t~~~~l~~~~~~~ 300 (312)
.+.... ...+++||++++++||||||||+ +++|+++.++.++.|+
T Consensus 205 ~~~~~~-~~~~~~tD~~al~~g~isvTPl~-~d~t~~~~l~~l~~~~ 249 (250)
T PRK00346 205 GGAGLE-EDAGEGTDFHAVAEGYVSITPLQ-LDLTAYAALDELKDWL 249 (250)
T ss_pred CCCccC-CCCCCCChHHHHHCCcEEEEecC-cCCcChHHHHHHHHhh
Confidence 976432 12368999999999999999999 7999999999999885
No 5
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=100.00 E-value=7.4e-76 Score=541.53 Aligned_cols=248 Identities=40% Similarity=0.620 Sum_probs=218.1
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhh
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (312)
|||||||||||+||||++|+++|+ .+ +||+||||+.||||+||++|+++|+++++++. ..|+|+|||+|||++||
T Consensus 1 mrILlTNDDGi~a~Gi~aL~~al~-~~-~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~~~av~GTPaDCV~lal 75 (252)
T COG0496 1 MRILLTNDDGIHAPGIRALARALR-EG-ADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---GAYAVNGTPADCVILGL 75 (252)
T ss_pred CeEEEecCCccCCHHHHHHHHHHh-hC-CCEEEEccCCCCcccccccccccCceeeEecc---ceEEecCChHHHHHHHH
Confidence 789999999999999999999999 44 69999999999999999999999999999863 67999999999999999
Q ss_pred hccCCCC-CCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCC-CCCcccHHHHHHHHHHHHHHHH
Q 021451 95 SQALFPS-VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK-SNVNDYTLAAEACLPIINAILA 172 (312)
Q Consensus 95 ~~~l~~~-~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~-~~~~~~~~aa~~~~~li~~l~~ 172 (312)
+. ++++ +|||||||||.|.|+|.|++|||||||||||+++||||||+|+...... ....+|+.|++++..+++.++.
T Consensus 76 ~~-l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~~~~e~A~~~~~~lv~~l~~ 154 (252)
T COG0496 76 NE-LLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYREAFGKQDVDFETAAKVARALVEALLA 154 (252)
T ss_pred HH-hccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehhccccccccccHHHHHHHHHHHHHHHHh
Confidence 97 6665 4999999999999999999999999999999999999999999764321 1224899999999999888774
Q ss_pred HHHhcCCCCCcEEEecCCCCC-CCCCCeEEeecccccccceeeEEeeecCCceeeeeeeecCCccccccccCCCCCCcce
Q 021451 173 EIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDL 251 (312)
Q Consensus 173 ~~~~~~~p~~~~lNVN~P~~~-~~~~gik~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g~~~~ 251 (312)
.++|..++||||||.++ .+.+|+|+||+|++.|...+.+. .+++|..||
T Consensus 155 ----~p~~~~~llNVNiP~~~~~~~~gi~vtr~g~~~~~~~~~~r--------------------------~dprG~~yy 204 (252)
T COG0496 155 ----NPLPPDTLLNVNIPNLPLEEIKGIRVTRLGRRRYAEPVEER--------------------------TDPRGEPYY 204 (252)
T ss_pred ----CCCCCCcEEEEeCCCCCccccCcEEEEechhhhccCcccee--------------------------eCCCCCEEE
Confidence 47888999999999987 68999999999999988766543 248899999
Q ss_pred eEeeeccCCCCCCCCChHHHHHCCCeeeccccCCCCCChHHHHHHHHHh
Q 021451 252 LFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWL 300 (312)
Q Consensus 252 ~~~~~~~~~~~~~~gtD~~al~~G~ISVTPL~~~~~t~~~~l~~~~~~~ 300 (312)
|+.+... ..+.++|||++++++||||||||+ .|+|.++.++.+++|+
T Consensus 205 W~~~~~~-~~~~~~gtD~~a~~~g~IsITPl~-~dlt~~~~~~~l~~~l 251 (252)
T COG0496 205 WIGPGGL-AEDAEEGTDFHAVREGYISITPLQ-LDLTAYEALESLKSWL 251 (252)
T ss_pred EecCCCc-cccCCCCchHHHHHcCCeeccccc-cCchHHHHHHHHHHhh
Confidence 9986432 233589999999999999999999 7999999999999887
No 6
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=2.1e-75 Score=544.31 Aligned_cols=254 Identities=29% Similarity=0.434 Sum_probs=213.9
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcC--CccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHH
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTN--RYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASL 92 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g--~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~ 92 (312)
|||||||||||+||||++|+++|++.. .++|+||||++||||+||+||+++||++++++ ...|+|+|||||||++
T Consensus 1 M~ILlTNDDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~---~~~yav~GTPaDCV~l 77 (261)
T PRK13931 1 MRILITNDDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELG---PRRFAAEGSPADCVLA 77 (261)
T ss_pred CeEEEEcCCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeC---CCeEEEcCchHHHHHH
Confidence 689999999999999999999998741 14999999999999999999999999999875 2469999999999999
Q ss_pred hhhccCCC-CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCC-CCCcccHHHHHHHHHHHHHH
Q 021451 93 GVSQALFP-SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK-SNVNDYTLAAEACLPIINAI 170 (312)
Q Consensus 93 al~~~l~~-~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~-~~~~~~~~aa~~~~~li~~l 170 (312)
||+. +++ ++|||||||||+|.|+|.+|+||||||||+||+++||||||||+.+.... ....+|+.|++++.+|++++
T Consensus 78 al~~-~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~~~~~~~~~~~~~~~~a~~~~~~l~~~~ 156 (261)
T PRK13931 78 ALYD-VMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQYYGPRNEGLDDPFEAARTHGARVVRKL 156 (261)
T ss_pred HHHH-hcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEeeccCCCccccccHHHHHHHHHHHHHHH
Confidence 9997 566 78999999999999999999999999999999999999999999643111 11236999999999999888
Q ss_pred HHHHHhcCCCCCcEEEecCCCCC-CCCCCeEEeeccccccc-ceeeEEeeecCCceeeeeeeecCCccccccccCCCCCC
Q 021451 171 LAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFK-MGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLE 248 (312)
Q Consensus 171 ~~~~~~~~~p~~~~lNVN~P~~~-~~~~gik~t~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g~ 248 (312)
+++...+..|++++||||||.++ .+.+|+|+|+||++.|. +.+++.. +++|+
T Consensus 157 l~~~~~~~~~~~~~lNVN~P~~~~~~~~gik~t~~g~~~~~~~~~~~~~--------------------------d~~g~ 210 (261)
T PRK13931 157 LEAGPWDDEDYRLFYNVNFPPVPAADVKGIRVAAQGFREGTRFGVEPHM--------------------------SPSGR 210 (261)
T ss_pred HhccCCCCCCCCeEEEEEeCcCCcccCCceEEeECCcccccCCceEEEE--------------------------CCCCC
Confidence 75421112244589999999987 56899999999999886 6665421 37788
Q ss_pred cceeEeeeccCCCCCCCCChHHHHHCCCeeeccccCCCCCChHHHHHHHHHh
Q 021451 249 EDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWL 300 (312)
Q Consensus 249 ~~~~~~~~~~~~~~~~~gtD~~al~~G~ISVTPL~~~~~t~~~~l~~~~~~~ 300 (312)
.|||+.+.... .+.+++||++++++||||||||+ +++|+++.++.++.|+
T Consensus 211 ~~yw~~~~~~~-~~~~~~tD~~a~~~G~iSVTPl~-~d~t~~~~l~~l~~~~ 260 (261)
T PRK13931 211 RFLWIKGGAQQ-VPTAPGTDAAVNLDGYISVTPMR-ADLTAHDRLAELEALL 260 (261)
T ss_pred eEEEEcCCCcC-CCCCCCCHHHHHHCCcEEEeccc-cCCcChHHHHHHHHhh
Confidence 89999865322 23368999999999999999999 6999999999999887
No 7
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=100.00 E-value=1.2e-72 Score=521.78 Aligned_cols=240 Identities=36% Similarity=0.607 Sum_probs=206.1
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccC-CCCeeEEecCChHHHHHHh
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLG 93 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~-~g~~~~~v~GTPaDcV~~a 93 (312)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++|+++++++. ++...|+|+|||||||++|
T Consensus 1 M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~g 78 (244)
T TIGR00087 1 MKILLTNDDGIHSPGIRALYQALKELG--EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILG 78 (244)
T ss_pred CeEEEECCCCCCCHhHHHHHHHHHhCC--CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHH
Confidence 689999999999999999999999887 8999999999999999999999999999864 3556899999999999999
Q ss_pred hhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCC--CCCcccHHHHHHHHHHHHHHH
Q 021451 94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK--SNVNDYTLAAEACLPIINAIL 171 (312)
Q Consensus 94 l~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~--~~~~~~~~aa~~~~~li~~l~ 171 (312)
|+. +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+...+.. ....+|+.+++++.+++++++
T Consensus 79 l~~-l~~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~~~~~~~~~~~~~~~~aa~~~~~li~~l~ 157 (244)
T TIGR00087 79 INE-LMPEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIVKNLL 157 (244)
T ss_pred HHH-hccCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEecccCcccccccccHHHHHHHHHHHHHHHH
Confidence 996 67889999999999999999999999999999999999999999999643211 113369999999999988877
Q ss_pred HHHHhcCCCCCcEEEecCCCCC-CCCCCeEEeecccccccceeeEEeeecCCceeeeeeeecCCccccccccCCCCCCcc
Q 021451 172 AEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEED 250 (312)
Q Consensus 172 ~~~~~~~~p~~~~lNVN~P~~~-~~~~gik~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g~~~ 250 (312)
+ ..+|++++||||||.++ .+.+|+|+|+||++.|...+++.. +++|+.|
T Consensus 158 ~----~~~p~~~~lNVN~P~~~~~~~~g~~~t~~~~~~~~~~~~~~~--------------------------d~~g~~~ 207 (244)
T TIGR00087 158 K----NGLPGGDLLNVNVPLVPSIQNTGIRITRLGRRMYATSVEERT--------------------------DPRGRSY 207 (244)
T ss_pred h----cCCCCCcEEEEEeCCCCcccCCCEEEEECCccccccCceEeE--------------------------CCCCCeE
Confidence 4 46889999999999987 568999999999999887665432 3677888
Q ss_pred eeEeeeccCCCCCCCCChHHHHHCCCeeeccccCCCCC
Q 021451 251 LLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNA 288 (312)
Q Consensus 251 ~~~~~~~~~~~~~~~gtD~~al~~G~ISVTPL~~~~~t 288 (312)
||+.+........+++||.+++++||||||||+ +++|
T Consensus 208 ~w~~~~~~~~~~~~~~tD~~~~~~g~iSvTPl~-~d~t 244 (244)
T TIGR00087 208 YWIGGDPGARCDREPGTDVDAIRSGYISITPLK-VDLT 244 (244)
T ss_pred EEeCCCccccCCCCCCCHHHHHhCCcEEEeccc-ccCC
Confidence 998864321122367999999999999999999 5765
No 8
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=2.1e-72 Score=523.75 Aligned_cols=236 Identities=29% Similarity=0.436 Sum_probs=201.7
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhh
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (312)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++|+++++++.+|.++|+|+|||||||++||
T Consensus 1 M~ILlTNDDGi~apGi~aL~~al~~~g--~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~~y~v~GTPaDCV~lal 78 (266)
T PRK13934 1 MKILVTNDDGVHSPGLRLLYEFVSPLG--EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLAT 78 (266)
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhCC--cEEEEccCCCCccccccccCCCCcEEEEeccCCcceEEeCCCHHHHHHHHH
Confidence 689999999999999999999999876 899999999999999999999999999986556678999999999999999
Q ss_pred hccCCCCCCcEEEecCCCCCccccc-ccchhhHHHHHHHHHcCCCeeEEeeeccCCCC---CCcccHHHHHHHHHHHHHH
Q 021451 95 SQALFPSVPDLVISGINMGSNCGYH-VVYSGTVAGAREAFFHGVPSVSISYDWVGGKS---NVNDYTLAAEACLPIINAI 170 (312)
Q Consensus 95 ~~~l~~~~PDLVvSGIN~G~N~g~~-v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~~---~~~~~~~aa~~~~~li~~l 170 (312)
.. + +++|||||||||+|.|+|.+ ++||||||||+||+++||||||||+....... ...+|+.+++++.++++++
T Consensus 79 ~~-l-~~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~~~~~~~~~~~~~~~~~~a~~~~~~lv~~l 156 (266)
T PRK13934 79 YG-L-GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSAYVDDWEELLEDGEALEIMKAVVRATAEYV 156 (266)
T ss_pred Hh-c-cCCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEecccCCcccccccchhHHHHHHHHHHHHHHH
Confidence 86 4 77899999999999999999 89999999999999999999999995421110 1124888888888888766
Q ss_pred HHHHHhcCCCCCc-EEEecCCCCCCCCCCe--EEeecccccccceeeEEeeecCCceeeeeeeecCCccccccccCCCCC
Q 021451 171 LAEIRNQTYPERC-FLNIDLPTDIPNNKGY--KLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPL 247 (312)
Q Consensus 171 ~~~~~~~~~p~~~-~lNVN~P~~~~~~~gi--k~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~d~~~~g 247 (312)
+ +..+|+++ +||||||.++. +|+ |+|+||++.|.+.++++. +++|
T Consensus 157 ~----~~~~p~~~~~LNVN~P~~~~--~gi~~~~tr~g~r~y~~~~~~~~--------------------------dp~g 204 (266)
T PRK13934 157 L----KRGMPKGVDVISVNFPRRLR--RGVKAKLVKAAKLRFAQQVERRV--------------------------DPRG 204 (266)
T ss_pred H----hcCCCCCCcEEEEecCCCCC--CCCceEEecCCccccCCceEEEE--------------------------CCCC
Confidence 5 35689986 99999998764 788 999999999987775532 3788
Q ss_pred CcceeEeeeccCCCCCCCCChHHHH-HCCCeeeccccCCCCCCh
Q 021451 248 EEDLLFRREVRGAHIADPDTDWQFL-REGYITVTPIGALSNADM 290 (312)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~gtD~~al-~~G~ISVTPL~~~~~t~~ 290 (312)
+.|||+.+.... ++++||++++ ++||||||||+ +++|+.
T Consensus 205 ~~~ywl~~~~~~---~~~~tD~~a~~~~GyISVTPL~-~dlT~~ 244 (266)
T PRK13934 205 RAYYWLYGTPLE---PEPGTDVYVVLKEGNIAITPLT-LNLNAL 244 (266)
T ss_pred CeEEEECCCccC---CCCCCcHHHHHHCCeEEEeccc-ccCccC
Confidence 889999965432 3689999955 99999999999 688743
No 9
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=100.00 E-value=1.5e-64 Score=454.18 Aligned_cols=189 Identities=44% Similarity=0.713 Sum_probs=154.8
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeecc----CCCCeeEEecCChHHHH
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD----FDGVTAYAVSGTPADCA 90 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~----~~g~~~~~v~GTPaDcV 90 (312)
|||||||||||+||||++|+++|++.| |+|+||||++||||+||++|+++|+++++.. ..+...|+|+|||+|||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g-~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALG-HDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTS-SEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcC-CeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 789999999999999999999998876 8999999999999999999999999997764 34577999999999999
Q ss_pred HHhhhccCCCC-CCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeeccCCCCCCcccHHHHHHHHHHHHH
Q 021451 91 SLGVSQALFPS-VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINA 169 (312)
Q Consensus 91 ~~al~~~l~~~-~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~~~~~~~~~~~~~aa~~~~~li~~ 169 (312)
++||+. ++++ +|||||||||+|.|+|.+++||||||||+||+++||||||||++... .....+|+.+++++.+++++
T Consensus 80 ~~al~~-~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~~-~~~~~~~~~aa~~~~~~i~~ 157 (196)
T PF01975_consen 80 KLALDG-LLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSDS-ESKDPDFETAARFAVKLIEK 157 (196)
T ss_dssp HHHHHC-TSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSS-T-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccccC-CCcHHHHHHHHHHHHHHHHH
Confidence 999997 4564 59999999999999999999999999999999999999999998653 11234799999999888887
Q ss_pred HHHHHHhcCCCCCcEEEecCCCCC-CCCCCeEEeeccccccc
Q 021451 170 ILAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFK 210 (312)
Q Consensus 170 l~~~~~~~~~p~~~~lNVN~P~~~-~~~~gik~t~~g~~~~~ 210 (312)
++ +..+|++++||||||.++ .+.+|+|+||+|+++|+
T Consensus 158 ~~----~~~~~~~~~lNVN~P~~~~~~~~g~~~t~~g~~~y~ 195 (196)
T PF01975_consen 158 LL----KNPLPPGVVLNVNFPSVPCEEIKGIKVTRLGRRRYK 195 (196)
T ss_dssp HH----HSGSSTTSEEEEEEESS-GGG-SEEEE-B--CCSCE
T ss_pred Hh----hcCCCCCcEEEEEcCCCCcccCCCEEEEECCcceeC
Confidence 77 346789999999999987 67899999999999885
No 10
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=88.16 E-value=1.7 Score=42.55 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=61.4
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEE-ecCChHHHHHHh
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYA-VSGTPADCASLG 93 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~-v~GTPaDcV~~a 93 (312)
|+|++.=..=-+..-.+.+.+.|++.| |+|.|.|-+.+ ....+-+ ...+++ .++. -.+|+..=+...
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~G-heV~it~R~~~-----~~~~LL~---~yg~~y---~~iG~~g~~~~~Kl~~~ 68 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRG-HEVLITARDKD-----ETEELLD---LYGIDY---IVIGKHGDSLYGKLLES 68 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCC-CEEEEEEeccc-----hHHHHHH---HcCCCe---EEEcCCCCCHHHHHHHH
Confidence 567775444444556778889999999 89999998653 1111111 111110 0111 114444433333
Q ss_pred hhc------cCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEe
Q 021451 94 VSQ------ALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (312)
Q Consensus 94 l~~------~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S 143 (312)
+.. .+...+||++||+- -+.|++-|..+|+|+|+|.
T Consensus 69 ~~R~~~l~~~~~~~~pDv~is~~--------------s~~a~~va~~lgiP~I~f~ 110 (335)
T PF04007_consen 69 IERQYKLLKLIKKFKPDVAISFG--------------SPEAARVAFGLGIPSIVFN 110 (335)
T ss_pred HHHHHHHHHHHHhhCCCEEEecC--------------cHHHHHHHHHhCCCeEEEe
Confidence 221 12235899999863 3678889999999999997
No 11
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=85.56 E-value=1.5 Score=42.41 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=26.9
Q ss_pred CeEEEeCCCCCC-CccHHHHHHHHHhcCCccEEEEeeCCC
Q 021451 15 PTIMVTNDDGID-APGLRSLVRVLVSTNRYTVQVCAPDSE 53 (312)
Q Consensus 15 ~~ILlTNDDGi~-s~Gi~~L~~~L~~~g~~~V~VVAP~~~ 53 (312)
||||++.=-+.. .--+..|+++|++.| |+|.++++..-
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rG-h~V~~~t~~~~ 39 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAG-HEVRVATPPEF 39 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCC-CeEEEeeCHhH
Confidence 578886533221 122567999999999 89999999863
No 12
>PLN02846 digalactosyldiacylglycerol synthase
Probab=85.56 E-value=4.7 Score=41.21 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=29.1
Q ss_pred CCCeEEEeCC------CCCCCccHHHHHHHHHhcCCccEEEEeeCCC
Q 021451 13 HKPTIMVTND------DGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (312)
Q Consensus 13 ~~~~ILlTND------DGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~ 53 (312)
.+|||+|.-| +|. +-.+..+.+.|.+.|+|+|+||||.-.
T Consensus 3 ~~mrIaivTdt~lP~vnGv-a~s~~~~a~~L~~~G~heV~vvaP~~~ 48 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGT-AVNPLFRAAYLAKDGDREVTLVIPWLS 48 (462)
T ss_pred CCCEEEEEEcCCCCCCCCe-eccHHHHHHHHHhcCCcEEEEEecCCc
Confidence 4566776655 344 245677788999999669999999764
No 13
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=79.43 E-value=3.1 Score=39.95 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccCCCCCCcEEE
Q 021451 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVI 107 (312)
Q Consensus 28 ~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVv 107 (312)
+|--+|+++|++.| .+|++|......+.....+......-....+. . ...+.|.+....-....+...+||++|
T Consensus 63 ~GA~aLa~aL~~lG-~~~~ivtd~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~d~lI 136 (291)
T PF14336_consen 63 PGAAALARALQALG-KEVVIVTDERCAPVVKAAVRAAGLQGVDKVEI--P---PFFPDDFAQAFLEADGLLKEPRPDLLI 136 (291)
T ss_pred HHHHHHHHHHHHcC-CeEEEEECHHHHHHHHHHHHHHhhCccccccc--c---cccccchhhhHHHHhhccccCCCCEEE
Confidence 68999999999999 69999998777666655443211100000000 0 012223332222222223345899999
Q ss_pred e----cCC--------CCCccccc-ccchhhHHHHHHHHHcCCCeeEEee
Q 021451 108 S----GIN--------MGSNCGYH-VVYSGTVAGAREAFFHGVPSVSISY 144 (312)
Q Consensus 108 S----GIN--------~G~N~g~~-v~~SGTVgAA~ea~l~GiPaIA~S~ 144 (312)
| |.| .|.|+... .....-+-.|.+ .|||.||+.=
T Consensus 137 aIERpGra~dG~Y~nmrG~~I~~~~a~~D~lf~~a~~---~gi~tigIGD 183 (291)
T PF14336_consen 137 AIERPGRAADGNYYNMRGEDISHLVAPLDDLFLAAKE---PGIPTIGIGD 183 (291)
T ss_pred EeCCcccCCCCCEecCcCCcCccccccHHHHHHHhhc---CCCCEEEECC
Confidence 8 555 33333321 122222333333 7999999973
No 14
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=78.65 E-value=29 Score=31.55 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=22.7
Q ss_pred CccHHHHHHHHHhcCCccEEEEeeCCCC
Q 021451 27 APGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (312)
Q Consensus 27 s~Gi~~L~~~L~~~g~~~V~VVAP~~~~ 54 (312)
...+..|+++|.+.| |+|.++++....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~ 43 (364)
T cd03814 17 VRTLQRLVEHLRARG-HEVLVIAPGPFR 43 (364)
T ss_pred ehHHHHHHHHHHHCC-CEEEEEeCCchh
Confidence 357888999999999 899999987654
No 15
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=75.17 E-value=20 Score=33.49 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=23.1
Q ss_pred eEEEe-CCCCCCCccHHHHHHHHHhcCCccEEEEeeCC
Q 021451 16 TIMVT-NDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (312)
Q Consensus 16 ~ILlT-NDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~ 52 (312)
+|+++ =..|-+......|++.|++.| |+|.|+++..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g-~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRG-VEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCC-CEEEEEeCCC
Confidence 45554 222222223347999999999 8999998743
No 16
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=74.07 E-value=13 Score=35.15 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=22.9
Q ss_pred CCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeee
Q 021451 100 PSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (312)
Q Consensus 100 ~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~ 145 (312)
..+||||||-... + +.+.|...|||+|.+.-.
T Consensus 91 ~~~pDlVi~d~~~----------~----~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 91 EYNPDLIISDFEY----------S----TVVAAKLLKIPVICISNQ 122 (321)
T ss_pred hcCCCEEEECCch----------H----HHHHHHhcCCCEEEEecc
Confidence 3589999986322 2 255667899999999853
No 17
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.70 E-value=15 Score=36.55 Aligned_cols=111 Identities=25% Similarity=0.363 Sum_probs=75.0
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhc-CCccEEEEeeCCCCCcCcccc-cCCCCeeeeeccCCCCeeEEecCC---hHHHHH
Q 021451 17 IMVTNDDGIDAPGLRSLVRVLVST-NRYTVQVCAPDSEKSAVSHSI-TWRHPISARPADFDGVTAYAVSGT---PADCAS 91 (312)
Q Consensus 17 ILlTNDDGi~s~Gi~~L~~~L~~~-g~~~V~VVAP~~~~Sg~g~si-t~~~pl~v~~~~~~g~~~~~v~GT---PaDcV~ 91 (312)
-||||-=|+.+.+ +...+.|.++ |..=+.+.+|++.-.|...+- ++..- +.. ..|-++|++-|. |.....
T Consensus 2 gLvtN~tgv~~~~-~~~~d~L~~~~~v~l~alF~PEHG~~G~~~ag~~v~~~--~D~--~tglpVySLYG~~~~Pt~~mL 76 (365)
T PF07075_consen 2 GLVTNQTGVDSDG-RHTIDVLAAAPGVNLVALFGPEHGFRGDAQAGEKVEDY--IDP--RTGLPVYSLYGKTRKPTPEML 76 (365)
T ss_pred EEEecccccCCCC-cCHHHHHhhCCCCCEEEEecCCCCCccchhcCCcCCCC--cCC--CCCCeEEECCCCCCCCCHHHH
Confidence 3899999999766 5566778776 533447889999777765542 11110 111 136667776665 877776
Q ss_pred HhhhccCCCCCCcEEEecCCCCCcccc-cccchhhHHHHHHHH-HcCCCeeEEee
Q 021451 92 LGVSQALFPSVPDLVISGINMGSNCGY-HVVYSGTVAGAREAF-FHGVPSVSISY 144 (312)
Q Consensus 92 ~al~~~l~~~~PDLVvSGIN~G~N~g~-~v~~SGTVgAA~ea~-l~GiPaIA~S~ 144 (312)
-+++.+++ || +.+|. ..+|--|++=+|||| ..|+|-|-+=.
T Consensus 77 ~~vDvlvf----Di--------QDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLDR 119 (365)
T PF07075_consen 77 KGVDVLVF----DI--------QDVGVRFYTYISTLYYVMEAAAENGKPVVVLDR 119 (365)
T ss_pred hCCCEEEE----eC--------ccCCchHHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 66665432 33 45675 478999999999998 69999998754
No 18
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=71.78 E-value=7.6 Score=37.65 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCC
Q 021451 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (312)
Q Consensus 30 i~~L~~~L~~~g~~~V~VVAP~~~~ 54 (312)
+-.|+++|+++| |+|+++.+...+
T Consensus 12 ~l~lA~~L~~~G-h~V~~~~~~~~~ 35 (392)
T TIGR01426 12 TLGVVEELVARG-HRVTYATTEEFA 35 (392)
T ss_pred cHHHHHHHHhCC-CeEEEEeCHHHH
Confidence 345899999999 899999997754
No 19
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=71.68 E-value=27 Score=32.64 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=18.9
Q ss_pred cHHHHHHHHHhcCCccEEEEeeCC
Q 021451 29 GLRSLVRVLVSTNRYTVQVCAPDS 52 (312)
Q Consensus 29 Gi~~L~~~L~~~g~~~V~VVAP~~ 52 (312)
.+..|.++|.+.| |+|.|+++..
T Consensus 15 ~~~~la~~l~~~G-~ev~v~~~~~ 37 (350)
T cd03785 15 PALALAEELRERG-AEVLFLGTKR 37 (350)
T ss_pred HHHHHHHHHHhCC-CEEEEEECCC
Confidence 4457899999999 8999998854
No 20
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=70.37 E-value=8 Score=31.58 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=28.1
Q ss_pred EEEeCCCCCCCcc----HHHHHHHHHhcCCccEEEEeeCCCCCcCcc
Q 021451 17 IMVTNDDGIDAPG----LRSLVRVLVSTNRYTVQVCAPDSEKSAVSH 59 (312)
Q Consensus 17 ILlTNDDGi~s~G----i~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~ 59 (312)
|||+|.-....-| +..|.++|.+.| |+|.|++|.....-...
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G-~~v~v~~~~~~~~~~~~ 46 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRG-HEVTVVSPGVKDPIEEE 46 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT--EEEEEESS-TTS-SST
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCC-CEEEEEEcCCCccchhh
Confidence 6788887777655 455888999999 89999999765544444
No 21
>PRK10307 putative glycosyl transferase; Provisional
Probab=68.92 E-value=8 Score=37.57 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=27.9
Q ss_pred CeEEEeCCCCCCCc-----cHHHHHHHHHhcCCccEEEEeeC
Q 021451 15 PTIMVTNDDGIDAP-----GLRSLVRVLVSTNRYTVQVCAPD 51 (312)
Q Consensus 15 ~~ILlTNDDGi~s~-----Gi~~L~~~L~~~g~~~V~VVAP~ 51 (312)
||||+.++--..-. -+..|++.|.+.| |+|.|++|.
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G-~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG-HEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC-CeEEEEecC
Confidence 67888887643222 3678999999999 899999975
No 22
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=67.38 E-value=5.4 Score=39.08 Aligned_cols=18 Identities=50% Similarity=0.768 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHcCCCeeEE
Q 021451 123 SGTVAGAREAFFHGVPSVSI 142 (312)
Q Consensus 123 SGTVgAA~ea~l~GiPaIA~ 142 (312)
+||+ |+||+++|+|+|.+
T Consensus 256 ggTM--a~EAA~LGtPaIs~ 273 (335)
T PF04007_consen 256 GGTM--AREAALLGTPAISC 273 (335)
T ss_pred CcHH--HHHHHHhCCCEEEe
Confidence 7787 67999999999954
No 23
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=66.34 E-value=12 Score=34.26 Aligned_cols=39 Identities=21% Similarity=0.117 Sum_probs=29.6
Q ss_pred CeEEEeCCCCCC----Cc-----cHHHHHHHHHhcCCccEEEEeeCCCC
Q 021451 15 PTIMVTNDDGID----AP-----GLRSLVRVLVSTNRYTVQVCAPDSEK 54 (312)
Q Consensus 15 ~~ILlTNDDGi~----s~-----Gi~~L~~~L~~~g~~~V~VVAP~~~~ 54 (312)
||||+..+--+. .- -+..|.++|.+.| |+|+|+.|....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~ 48 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG-HEVTLFASGDSK 48 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC-ceEEEEecCCCC
Confidence 679998876432 22 2788999999988 899999987654
No 24
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=58.91 E-value=47 Score=34.15 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=59.7
Q ss_pred cHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccCCCCCCcEEEe
Q 021451 29 GLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVIS 108 (312)
Q Consensus 29 Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVvS 108 (312)
-+..+++.|.++| .+++++=.. -||+.....-++--+-.+++..+.+=++.-.+.+...++ -..|.|--
T Consensus 225 ~~~~ra~~Lv~aG-Vd~i~~D~a-----~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~-----~G~d~i~v 293 (475)
T TIGR01303 225 DVGGKAKALLDAG-VDVLVIDTA-----HGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLE-----AGANIIKV 293 (475)
T ss_pred cHHHHHHHHHHhC-CCEEEEeCC-----CCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHH-----hCCCEEEE
Confidence 4567888888888 577666332 255543322111111113344455543333333333333 25899999
Q ss_pred cCCCCCcccccccch---hhHHHHHHH----HHcCCCeeEEe
Q 021451 109 GINMGSNCGYHVVYS---GTVAGAREA----FFHGVPSVSIS 143 (312)
Q Consensus 109 GIN~G~N~g~~v~~S---GTVgAA~ea----~l~GiPaIA~S 143 (312)
|+--|.|+.+..+.- -|+.|-+++ ...|+|.||=-
T Consensus 294 g~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadG 335 (475)
T TIGR01303 294 GVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADG 335 (475)
T ss_pred CCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeC
Confidence 999999997664322 367776666 46799998743
No 25
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=55.28 E-value=67 Score=29.77 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=66.5
Q ss_pred ccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCC-Ce----------eeee--------cc---------CCCC--
Q 021451 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRH-PI----------SARP--------AD---------FDGV-- 77 (312)
Q Consensus 28 ~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~-pl----------~v~~--------~~---------~~g~-- 77 (312)
++|.++=+++|+ .+|-|+-+.+-.-|.||+-|.-. .+ .++. ++ ..|.
T Consensus 46 ~~i~AaDeA~KA---AnVevv~a~~~~gGaghg~~~~~G~viiIi~G~dvsdVrsAveaa~~~i~~~~~f~~~n~~g~~~ 122 (217)
T PRK15405 46 VTYTALDEATKQ---AMVEVVYARSFYAGAAHASTPLAGEVIGILAGPNPAEVRAGLDAMVAFIENGAAFQSANDDDSTA 122 (217)
T ss_pred hHHhHHHHHHhh---cceEEEEEEeeccccccCCCCCCccEEEEEeCCCHHHHHHHHHHHHHHHHhhhceEeeCCCCCEE
Confidence 889988888875 37999999999889888874210 00 0000 00 0011
Q ss_pred ----------------------eeE-EecCChHHHHHHhhhccCCCCCCcEE-EecCCCCCcccccccchhhHHHHHHHH
Q 021451 78 ----------------------TAY-AVSGTPADCASLGVSQALFPSVPDLV-ISGINMGSNCGYHVVYSGTVAGAREAF 133 (312)
Q Consensus 78 ----------------------~~~-~v~GTPaDcV~~al~~~l~~~~PDLV-vSGIN~G~N~g~~v~~SGTVgAA~ea~ 133 (312)
+.| ++=|-|+- -.++++..+---..++| ..||..|.|-|- .+.||+-||.++|+
T Consensus 123 ~~a~~~aRag~~l~k~~g~~~G~a~~~li~~P~~-~~~~~D~AlKaA~V~~~~~~~P~~~t~f~~-~~ltG~~~A~r~A~ 200 (217)
T PRK15405 123 FFAHVVSRTGSYLSKTAGIAEGEPLAYLIAPPLE-AMYGIDAALKAADVQLVTFVGPPSETNFGG-ALLTGSQSACKAAC 200 (217)
T ss_pred EEEEEcccHHHHHHHHcCCCCCceeEEEecCcHH-HHHHHHHHHhhcCceEEEEeCCCCCceecC-eeEEeCHHHHHHHH
Confidence 111 24477744 45566654433468885 899999998887 88899999988887
Q ss_pred H
Q 021451 134 F 134 (312)
Q Consensus 134 l 134 (312)
.
T Consensus 201 ~ 201 (217)
T PRK15405 201 N 201 (217)
T ss_pred H
Confidence 4
No 26
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=53.32 E-value=85 Score=27.89 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=25.3
Q ss_pred eEEEeCCCCCCCcc----HHHHHHHHHhcCCccEEEEeeCCCC
Q 021451 16 TIMVTNDDGIDAPG----LRSLVRVLVSTNRYTVQVCAPDSEK 54 (312)
Q Consensus 16 ~ILlTNDDGi~s~G----i~~L~~~L~~~g~~~V~VVAP~~~~ 54 (312)
|||+....-...-| +..|+++|.+.| |+|.++.+....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 42 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKG-HEVTIISLDKGE 42 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCC-CeEEEEecCCCC
Confidence 35555554332333 455788888778 899999987765
No 27
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=52.97 E-value=24 Score=31.35 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=27.1
Q ss_pred CCCeEEEeCCCCCCCccHHHHHHHHHhcCCc
Q 021451 13 HKPTIMVTNDDGIDAPGLRSLVRVLVSTNRY 43 (312)
Q Consensus 13 ~~~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~ 43 (312)
.+..|.||-|||+...+...+.+.|++.+..
T Consensus 63 ~~k~v~lTFDDg~~~~~~~~il~iL~k~~i~ 93 (267)
T COG0726 63 PGKAVALTFDDGPLDGNTPRILPLLKKYGIK 93 (267)
T ss_pred CCCeEEEEeecCCCCCCcHHHHHHHHHcCCc
Confidence 3467999999999998999999999998754
No 28
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=52.90 E-value=15 Score=33.96 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=28.1
Q ss_pred CeEEEeCCCCC-C--CccHHHHHHHHHhcCCccEEEEeeCCC
Q 021451 15 PTIMVTNDDGI-D--APGLRSLVRVLVSTNRYTVQVCAPDSE 53 (312)
Q Consensus 15 ~~ILlTNDDGi-~--s~Gi~~L~~~L~~~g~~~V~VVAP~~~ 53 (312)
||||+-|+... . ..-...|.++|.+.| |+|.|+++...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G-~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAG-VDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcC-CceeEEEeecc
Confidence 67888876532 2 234667889999999 89999998665
No 29
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=46.44 E-value=22 Score=28.41 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccC--CCCCCcEEE
Q 021451 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQAL--FPSVPDLVI 107 (312)
Q Consensus 30 i~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l--~~~~PDLVv 107 (312)
+..|+++|.+.| |+|.|++|........ .....+++..+...... +.. + ... ....+...+ ...+||+|.
T Consensus 7 ~~~l~~~L~~~G-~~V~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~-~-~~~-~~~~~~~~l~~~~~~~Dvv~ 78 (160)
T PF13579_consen 7 VRELARALAARG-HEVTVVTPQPDPEDDE---EEEDGVRVHRLPLPRRP-WPL-R-LLR-FLRRLRRLLAARRERPDVVH 78 (160)
T ss_dssp HHHHHHHHHHTT--EEEEEEE---GGG-S---EEETTEEEEEE--S-SS-SGG-G-HCC-HHHHHHHHCHHCT---SEEE
T ss_pred HHHHHHHHHHCC-CEEEEEecCCCCcccc---cccCCceEEeccCCccc-hhh-h-hHH-HHHHHHHHHhhhccCCeEEE
Confidence 567999999999 8999999976555111 11223334333221110 000 0 011 123343333 456899998
Q ss_pred ecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEee
Q 021451 108 SGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (312)
Q Consensus 108 SGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~ 144 (312)
.- + ..++.++ +......|+|-|.---
T Consensus 79 ~~---------~-~~~~~~~-~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 79 AH---------S-PTAGLVA-ALARRRRGIPLVVTVH 104 (160)
T ss_dssp EE---------H-HHHHHHH-HHHHHHHT--EEEE-S
T ss_pred ec---------c-cchhHHH-HHHHHccCCcEEEEEC
Confidence 42 1 1244333 2223378999986654
No 30
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=45.55 E-value=25 Score=33.35 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=26.1
Q ss_pred CeEEEeC-CCCCC--CccHHHHHHHHHhcCCccEEEEeeCC
Q 021451 15 PTIMVTN-DDGID--APGLRSLVRVLVSTNRYTVQVCAPDS 52 (312)
Q Consensus 15 ~~ILlTN-DDGi~--s~Gi~~L~~~L~~~g~~~V~VVAP~~ 52 (312)
|+||+-+ +.++. ..-+..|++.|.+.| |+|.|+++..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G-~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRG-HEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCC-CeEEEEcCCC
Confidence 4566555 43432 234678999999999 8999999753
No 31
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=43.52 E-value=1.2e+02 Score=30.39 Aligned_cols=43 Identities=30% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeee
Q 021451 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (312)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~ 145 (312)
+.-||||.| .|.=-.....=...+|.|..|..+|+|.|||+-.
T Consensus 282 ~~ADlVITG--EG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~ 324 (375)
T TIGR00045 282 KDADLVITG--EGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGS 324 (375)
T ss_pred cCCCEEEEC--CCcccccccCCchHHHHHHHHHHhCCeEEEEecc
Confidence 368999998 3433333334445679999999999999999864
No 32
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=43.07 E-value=1.3e+02 Score=29.31 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEee
Q 021451 98 LFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (312)
Q Consensus 98 l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~ 144 (312)
+...+||+||+ .|- +.| +-+++.|.++|+|.+-..+
T Consensus 87 ~~~~kPdvvi~---~Gg------y~s--~p~~~aa~~~~~p~~i~e~ 122 (352)
T PRK12446 87 IRKLKPDVIFS---KGG------FVS--VPVVIGGWLNRVPVLLHES 122 (352)
T ss_pred HHhcCCCEEEe---cCc------hhh--HHHHHHHHHcCCCEEEECC
Confidence 33468999998 221 122 3466888899999985544
No 33
>PRK10342 glycerate kinase I; Provisional
Probab=41.95 E-value=1.4e+02 Score=29.93 Aligned_cols=43 Identities=21% Similarity=0.060 Sum_probs=31.3
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeee
Q 021451 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (312)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~ 145 (312)
+.-||||.| .|.=-.....=-..+|-|..|..+|+|.|||+..
T Consensus 283 ~~ADLVITG--EG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 283 HDCTLVITG--EGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred ccCCEEEEC--CCcCcccccCCccHHHHHHHHHHhCCCEEEEecc
Confidence 368999998 3433333344444669999999999999999864
No 34
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=41.93 E-value=22 Score=28.76 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCccEEEEeeCCC
Q 021451 31 RSLVRVLVSTNRYTVQVCAPDSE 53 (312)
Q Consensus 31 ~~L~~~L~~~g~~~V~VVAP~~~ 53 (312)
-+|.++|+++| |+|.++++..-
T Consensus 16 lala~~L~~rG-h~V~~~~~~~~ 37 (139)
T PF03033_consen 16 LALARALRRRG-HEVRLATPPDF 37 (139)
T ss_dssp HHHHHHHHHTT--EEEEEETGGG
T ss_pred HHHHHHHhccC-CeEEEeecccc
Confidence 47999999999 89999988553
No 35
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=39.70 E-value=54 Score=32.70 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=29.3
Q ss_pred CCCCeEEEeCC-CCCC-----CccHHHHHHHHHhcCCccEEEEeeCCC
Q 021451 12 DHKPTIMVTND-DGID-----APGLRSLVRVLVSTNRYTVQVCAPDSE 53 (312)
Q Consensus 12 ~~~~~ILlTND-DGi~-----s~Gi~~L~~~L~~~g~~~V~VVAP~~~ 53 (312)
.+.|||++..+ .... ..-+..|.+.|++.| |+|.|+++...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G-~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMG-DEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 45799998865 2221 124667889999999 89999998654
No 36
>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. This entry represents the N-terminal domain of the Impact proteins.; PDB: 1VI7_A 2CVE_A.
Probab=39.50 E-value=37 Score=28.00 Aligned_cols=32 Identities=31% Similarity=0.261 Sum_probs=23.3
Q ss_pred EEEeCCCCCCC--ccHHHHHHHHHhcCCccEEEEe
Q 021451 17 IMVTNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (312)
Q Consensus 17 ILlTNDDGi~s--~Gi~~L~~~L~~~g~~~V~VVA 49 (312)
+-=.+|||-.+ .|...| +.|+..+..||.||.
T Consensus 50 ~~~~~DDGEp~gtAG~piL-~~L~~~~l~nv~VVV 83 (110)
T PF01205_consen 50 IEGFSDDGEPGGTAGKPIL-EVLEHNGLTNVLVVV 83 (110)
T ss_dssp EEEEE-TTSSTTSSCHHHH-HHHHHCTB-SEEEEE
T ss_pred eecccCCCCCCCCccHHHH-HHHHhCCcCCEEEEE
Confidence 44578999988 998866 778887777887664
No 37
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.00 E-value=22 Score=34.95 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=17.7
Q ss_pred chhhHHHHHHHHHcCCCeeEEee
Q 021451 122 YSGTVAGAREAFFHGVPSVSISY 144 (312)
Q Consensus 122 ~SGTVgAA~ea~l~GiPaIA~S~ 144 (312)
-|||+ |+||++.|+|||.++-
T Consensus 259 ~ggTM--arEaAlLGtpaIs~~p 279 (346)
T COG1817 259 AGGTM--AREAALLGTPAISCYP 279 (346)
T ss_pred CCchH--HHHHHHhCCceEEecC
Confidence 47787 7899999999998874
No 38
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=37.14 E-value=55 Score=32.75 Aligned_cols=61 Identities=31% Similarity=0.299 Sum_probs=36.6
Q ss_pred EecCChHHHHHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeee
Q 021451 81 AVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (312)
Q Consensus 81 ~v~GTPaDcV~~al~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~ 145 (312)
.++|...=.=.++|...+ ..-||||.| .|..-.....=....+-|..|..+|+|.|||...
T Consensus 265 l~sG~~~v~~~~~l~~~l--~~aDlVITG--EG~~D~Qtl~GK~p~~Va~~A~~~~vPviav~G~ 325 (377)
T PF02595_consen 265 LVSGIDLVLELLGLEERL--EDADLVITG--EGRLDAQTLAGKVPGGVARLAKKHGVPVIAVAGS 325 (377)
T ss_dssp EEEHHHHHHHHTTHHHHC--CC-SEEEE----CECSTTTTTTCHHHHHHCCHCCTT--EEEEECE
T ss_pred ECchHHHHHHhcCHHHHh--cCCCEEEEC--ccccccccCCCcHHHHHHHHHHHcCCcEEEEeCC
Confidence 355655555555665433 479999999 4554333344344557788888999999999865
No 39
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=36.95 E-value=40 Score=34.26 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=39.0
Q ss_pred ChHHHHHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEee
Q 021451 85 TPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (312)
Q Consensus 85 TPaDcV~~al~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~ 144 (312)
.+-.+..-=+. .+-+.+||+||.||- -|.|..=.-.|||..|.+. ..|||+|+-=+
T Consensus 60 n~eea~~~i~~-mv~k~~pDv~iaGPa--FNagrYG~acg~va~aV~e-~~~IP~vt~My 115 (431)
T TIGR01918 60 NLEEAVARVLE-MLKDKEPDIFIAGPA--FNAGRYGVACGEICKVVQD-KLNVPAVTSMY 115 (431)
T ss_pred CHHHHHHHHHH-HHHhcCCCEEEEcCc--cCCccHHHHHHHHHHHHHH-hhCCCeEEEec
Confidence 34444433333 244468999999984 5778776778899888776 57999997543
No 40
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=36.84 E-value=41 Score=34.25 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=38.3
Q ss_pred hHHHHHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEee
Q 021451 86 PADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (312)
Q Consensus 86 PaDcV~~al~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~ 144 (312)
+-.+..-=+. .+-+.+||+||.||- -|.|..=.-.|||..|.+. ..|||+|+-=+
T Consensus 61 ~eea~~~i~~-mv~k~~pDv~iaGPa--FNagrYG~acg~va~aV~e-~~~IP~vtaMy 115 (431)
T TIGR01917 61 LEEAKAKVLE-MIKGANPDIFIAGPA--FNAGRYGMAAGAITKAVQD-ELGIKAFTAMY 115 (431)
T ss_pred HHHHHHHHHH-HHHhcCCCEEEEcCc--cCCccHHHHHHHHHHHHHH-hhCCCeEEEec
Confidence 4444333333 233458999999984 5778776778899888776 57999997543
No 41
>PRK09932 glycerate kinase II; Provisional
Probab=36.52 E-value=1.8e+02 Score=29.19 Aligned_cols=43 Identities=23% Similarity=0.115 Sum_probs=30.7
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeee
Q 021451 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (312)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~ 145 (312)
+.-||||.| .|.=-.....=-..+|.|..|..+|+|.|+|+-.
T Consensus 283 ~~ADlVITG--EG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 283 QGAALVITG--EGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred ccCCEEEEC--CCcccccccCCccHHHHHHHHHHcCCCEEEEecc
Confidence 368999998 3433223233333668999999999999999864
No 42
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=36.51 E-value=50 Score=26.52 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=26.2
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCC
Q 021451 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (312)
Q Consensus 17 ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~ 53 (312)
++|+|.+. +-+.-+++.|++.| +||.|+++..+
T Consensus 3 l~i~~~~~---~~~~~~~~~L~~~g-~~V~ii~~~~~ 35 (139)
T PF13477_consen 3 LLIGNTPS---TFIYNLAKELKKRG-YDVHIITPRND 35 (139)
T ss_pred EEEecCcH---HHHHHHHHHHHHCC-CEEEEEEcCCC
Confidence 56777773 45788999999988 79999999444
No 43
>PRK15415 propanediol utilization protein PduB; Provisional
Probab=36.10 E-value=36 Score=32.50 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=44.9
Q ss_pred EecCChHHHHHHhhhccCCCCCCcEE-EecCCCCCccccc--ccchhhHHHHHHHHHcC
Q 021451 81 AVSGTPADCASLGVSQALFPSVPDLV-ISGINMGSNCGYH--VVYSGTVAGAREAFFHG 136 (312)
Q Consensus 81 ~v~GTPaDcV~~al~~~l~~~~PDLV-vSGIN~G~N~g~~--v~~SGTVgAA~ea~l~G 136 (312)
.+.+.|+-.-..+.+..+--...+|+ ...|..|.+++-- +..+|.+||..+|...+
T Consensus 185 iie~~p~a~gi~aaD~AlKaA~Velv~~~~p~~gt~~~Gk~~~~itGDvsAV~~Av~Aa 243 (266)
T PRK15415 185 IIVGAPAGIGVVMADTALKSANVDVVAYSSPAHGTSFSNEVILTISGDSGAVRQAVIAA 243 (266)
T ss_pred EEEcCcHHHHHHHHHHHHhhcCeeEEEEEcCccccccCCeEEEEEEecHHHHHHHHHHH
Confidence 47799999888999875433578988 7789999999854 78999999988887544
No 44
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=35.09 E-value=1.6e+02 Score=28.78 Aligned_cols=52 Identities=25% Similarity=0.199 Sum_probs=34.0
Q ss_pred ChHHHHHHhhhc---cCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeec
Q 021451 85 TPADCASLGVSQ---ALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW 146 (312)
Q Consensus 85 TPaDcV~~al~~---~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~ 146 (312)
+.++.+..++.. ++...+||+||+- | . .+ =|+++|+.|..+|||.+-+-.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~Pd~vlv~---G----D--~~-~~la~alaA~~~~IPv~HveaG~ 127 (365)
T TIGR03568 73 GMAKSMGLTIIGFSDAFERLKPDLVVVL---G----D--RF-EMLAAAIAAALLNIPIAHIHGGE 127 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEe---C----C--ch-HHHHHHHHHHHhCCcEEEEECCc
Confidence 445555444443 2334689999863 2 1 11 16789999999999999887653
No 45
>PRK06849 hypothetical protein; Provisional
Probab=34.61 E-value=59 Score=31.74 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=26.8
Q ss_pred CCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeC
Q 021451 13 HKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (312)
Q Consensus 13 ~~~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~ 51 (312)
..|+|||| |-.++.-..+++.|.++| ++|+++...
T Consensus 3 ~~~~VLI~---G~~~~~~l~iar~l~~~G-~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLIT---GARAPAALELARLFHNAG-HTVILADSL 37 (389)
T ss_pred CCCEEEEe---CCCcHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 46889999 555554566888999999 799998654
No 46
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=33.96 E-value=65 Score=26.64 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=22.7
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeC
Q 021451 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (312)
Q Consensus 17 ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~ 51 (312)
||+|.|- .+..+.+.|++.| .+|+|+++.
T Consensus 104 vLvSgD~-----Df~~~i~~lr~~G-~~V~v~~~~ 132 (149)
T cd06167 104 VLVSGDS-----DFVPLVERLRELG-KRVIVVGFE 132 (149)
T ss_pred EEEECCc-----cHHHHHHHHHHcC-CEEEEEccC
Confidence 7888865 4556777778888 699999997
No 47
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=33.29 E-value=52 Score=32.83 Aligned_cols=43 Identities=28% Similarity=0.250 Sum_probs=35.7
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeee
Q 021451 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (312)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~ 145 (312)
..-||||.| .|++-...+.=-=++|-|..|-.+++|.||+-..
T Consensus 283 ~daDLVITG--EGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs 325 (378)
T COG1929 283 KDADLVITG--EGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAGS 325 (378)
T ss_pred ccCCEEEeC--CCcccccccCCccchHHHHhhhhhCCCEEEEecc
Confidence 368999999 7888777776666789999999999999999653
No 48
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.14 E-value=1.5e+02 Score=29.98 Aligned_cols=103 Identities=19% Similarity=0.151 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccCCCCCCcEEEec
Q 021451 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISG 109 (312)
Q Consensus 30 i~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVvSG 109 (312)
-...+++|.++| .|++++= ++-+|+.++...++--+..+++.....-+-.-.+.++.++. + ..|.|..|
T Consensus 154 ~~~~v~~lv~aG-vDvI~iD-----~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~--a---GaD~I~vG 222 (404)
T PRK06843 154 TIERVEELVKAH-VDILVID-----SAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS--V---GADCLKVG 222 (404)
T ss_pred HHHHHHHHHhcC-CCEEEEE-----CCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH--c---CCCEEEEC
Confidence 346788888888 6888872 23355555443332111123333333434444444444453 1 58999999
Q ss_pred CCCCCccccccc-chh--hHHHHH---HHH-HcCCCeeEEe
Q 021451 110 INMGSNCGYHVV-YSG--TVAGAR---EAF-FHGVPSVSIS 143 (312)
Q Consensus 110 IN~G~N~g~~v~-~SG--TVgAA~---ea~-l~GiPaIA~S 143 (312)
+-.|..++.... -.| ++.|-. +.+ ..++|.||=.
T Consensus 223 ~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdG 263 (404)
T PRK06843 223 IGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADG 263 (404)
T ss_pred CCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeC
Confidence 988886665432 222 333332 222 3589988643
No 49
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=31.92 E-value=67 Score=29.11 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCC
Q 021451 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (312)
Q Consensus 30 i~~L~~~L~~~g~~~V~VVAP~~~~ 54 (312)
+..-++.|.++| ++|.++.|....
T Consensus 25 ~~~p~~~l~~aG-~~V~~as~~g~~ 48 (221)
T cd03141 25 LAHPYDVFTEAG-YEVDFASPKGGK 48 (221)
T ss_pred HHHHHHHHHHCC-CeEEEECCCCCC
Confidence 445688899999 799999996643
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=31.66 E-value=66 Score=29.13 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=22.7
Q ss_pred CCccHHHHHHHHHhcCCccEEEEeeCCCC
Q 021451 26 DAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (312)
Q Consensus 26 ~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~ 54 (312)
.+.-++.|+++|.+.| |+|.++.|....
T Consensus 16 ~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 43 (374)
T cd03817 16 VATSIRRLAEELEKRG-HEVYVVAPSYPG 43 (374)
T ss_pred eehHHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 4456888999999998 899999986643
No 51
>TIGR01441 GPR GPR endopeptidase. This model describes a tetrameric protease that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs.
Probab=30.88 E-value=1.1e+02 Score=30.37 Aligned_cols=73 Identities=27% Similarity=0.414 Sum_probs=45.9
Q ss_pred EecCChHHHHHHhhhccCCCCCCcEEE---------------------ecCCCCCccccc--ccchhhHHHHHHHHHcCC
Q 021451 81 AVSGTPADCASLGVSQALFPSVPDLVI---------------------SGINMGSNCGYH--VVYSGTVAGAREAFFHGV 137 (312)
Q Consensus 81 ~v~GTPaDcV~~al~~~l~~~~PDLVv---------------------SGIN~G~N~g~~--v~~SGTVgAA~ea~l~Gi 137 (312)
...|-=.-=+..|+-. .-+||||| .||+.|.=+|.. -+..-| .||
T Consensus 156 g~TGiET~EIIkgiVe---k~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~et---------LGV 223 (358)
T TIGR01441 156 GITGIETSDIIRGIIE---QIKPDFVIAIDALAARKMERVNSTIQISDTGIHPGSGVGNKRKELSKKT---------LGV 223 (358)
T ss_pred ccccccHHHHHHHHHH---hhCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCHHH---------cCC
Confidence 3555555556666643 34899998 499999866642 334444 589
Q ss_pred CeeEEeeeccCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 021451 138 PSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEI 174 (312)
Q Consensus 138 PaIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~ 174 (312)
|.||+-.... .+ |+.++.+.++.+++.+
T Consensus 224 PVIAIGVPTV------Vd---A~tI~~Dtid~~l~~~ 251 (358)
T TIGR01441 224 PVIAVGVPTV------VD---AVTIASDTIDYVLKHF 251 (358)
T ss_pred CEEEEcCCee------ec---hHHHHHHHHHHHHHHH
Confidence 9999987432 22 4555666666666544
No 52
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=30.47 E-value=72 Score=29.61 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=41.6
Q ss_pred CCeEEEeCCCCCCC-ccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHH
Q 021451 14 KPTIMVTNDDGIDA-PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASL 92 (312)
Q Consensus 14 ~~~ILlTNDDGi~s-~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~ 92 (312)
..+++|+ |||+.. .-.++-.+++++++-.+|+|..|-..++.+-. ++......+ |=-+|.+-..+
T Consensus 124 g~~VIlV-DDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~------------l~s~~D~vv-c~~~P~~F~AV 189 (220)
T COG1926 124 GRTVILV-DDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAE------------LESEADEVV-CLYMPAPFEAV 189 (220)
T ss_pred CCEEEEE-eCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHH------------HHhhcCeEE-EEcCCccHHHH
Confidence 3445555 999975 23556667778777779999999776655432 221122322 33477776666
Q ss_pred hhhc
Q 021451 93 GVSQ 96 (312)
Q Consensus 93 al~~ 96 (312)
|.++
T Consensus 190 g~~Y 193 (220)
T COG1926 190 GEFY 193 (220)
T ss_pred HHHH
Confidence 6653
No 53
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=30.33 E-value=32 Score=30.75 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=21.4
Q ss_pred ccccchh-hHHHHHHHHH-cCCCeeEEeee
Q 021451 118 YHVVYSG-TVAGAREAFF-HGVPSVSISYD 145 (312)
Q Consensus 118 ~~v~~SG-TVgAA~ea~l-~GiPaIA~S~~ 145 (312)
.||+|+| ||=||+.|.. +|-|+ .+.+.
T Consensus 103 DDVLytGRTIRAAldal~d~GRPa-~I~La 131 (179)
T COG2065 103 DDVLYTGRTIRAALDALVDYGRPA-KIQLA 131 (179)
T ss_pred eeecccCccHHHHHHHHHhcCCcc-eEEEE
Confidence 4799999 9999999994 78886 34443
No 54
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=30.32 E-value=60 Score=31.86 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=24.6
Q ss_pred CCCCcE-EEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEe
Q 021451 100 PSVPDL-VISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (312)
Q Consensus 100 ~~~PDL-VvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S 143 (312)
.+.||+ ||..++.- --|-.||...|||.||+-
T Consensus 150 ~~~Pd~viv~d~~~e------------~~AI~EA~kl~IPvIaiv 182 (326)
T PRK12311 150 GGLPDLLFVIDTNKE------------DIAIQEAQRLGIPVAAIV 182 (326)
T ss_pred ccCCCEEEEeCCccc------------hHHHHHHHHcCCCEEEEe
Confidence 357995 55666643 358999999999999996
No 55
>PRK02858 germination protease; Provisional
Probab=29.85 E-value=1.2e+02 Score=30.32 Aligned_cols=73 Identities=29% Similarity=0.441 Sum_probs=45.4
Q ss_pred EecCChHHHHHHhhhccCCCCCCcEEE---------------------ecCCCCCccccc--ccchhhHHHHHHHHHcCC
Q 021451 81 AVSGTPADCASLGVSQALFPSVPDLVI---------------------SGINMGSNCGYH--VVYSGTVAGAREAFFHGV 137 (312)
Q Consensus 81 ~v~GTPaDcV~~al~~~l~~~~PDLVv---------------------SGIN~G~N~g~~--v~~SGTVgAA~ea~l~Gi 137 (312)
...|-=.-=+..|+-. .-+||||| .||+.|.=+|.. -+..-| .||
T Consensus 166 g~TGiET~EIIkgIVe---k~KPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~et---------LGV 233 (369)
T PRK02858 166 GITGIETSDIIYGIIE---KTKPDFVIAIDALAARSIERVNTTIQISDTGIHPGSGVGNKRKELSKET---------LGI 233 (369)
T ss_pred cccchhHHHHHHHHHH---hhCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCHHH---------cCC
Confidence 3555555555566633 34899998 489988866643 334334 589
Q ss_pred CeeEEeeeccCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 021451 138 PSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEI 174 (312)
Q Consensus 138 PaIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~ 174 (312)
|.||+-.... .+ |+.++.+.++.+++.+
T Consensus 234 PVIAIGVPTV------Vd---A~tI~~Dtid~~l~~~ 261 (369)
T PRK02858 234 PVIAIGVPTV------VD---AVTITSDTIDFILKHF 261 (369)
T ss_pred CEEEEcCCee------ec---hHHHHHHHHHHHHHHH
Confidence 9999987432 22 4555666666666544
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=29.39 E-value=4.1e+02 Score=23.61 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHhcCCccEEEEeeCCCCCcC
Q 021451 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAV 57 (312)
Q Consensus 28 ~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~ 57 (312)
.-+..+.+.|.+.| ++|+|+.+.......
T Consensus 18 ~~~~~~~~~l~~~g-~~v~v~~~~~~~~~~ 46 (377)
T cd03798 18 IFVKELARALAKRG-VEVTVLAPGPWGPKL 46 (377)
T ss_pred HHHHHHHHHHHHCC-CceEEEecCCCCCCc
Confidence 34777999999888 799999987665443
No 57
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=29.23 E-value=75 Score=24.23 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=28.7
Q ss_pred eEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEe
Q 021451 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (312)
Q Consensus 16 ~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVA 49 (312)
.+.|+|+.|+++.-...|++..++.. .+|++..
T Consensus 5 ~~~i~~~~GlHaRpa~~lv~~a~~~~-~~i~i~~ 37 (84)
T PF00381_consen 5 EVTIKNPNGLHARPAAELVQIASKFD-SDITIRK 37 (84)
T ss_dssp EEEEESTTSSSHHHHHHHHHHHHTSS-SEEEEEE
T ss_pred EEEEcCCCcccHHHHHHHHHHHhhCC-CEEEEEe
Confidence 48899999999999999999998876 6888874
No 58
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=28.77 E-value=2e+02 Score=28.73 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccCCCCCCcEEEecC
Q 021451 31 RSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGI 110 (312)
Q Consensus 31 ~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVvSGI 110 (312)
..++.+ .+.| ....|++-++--...|+.+|. ++....|.++..+ .|.....+ +-.++.|.||.|-
T Consensus 190 ~~i~~a-~~~g-k~f~V~v~EsRP~~qG~rlta------~eL~~~GIpvtlI----~Dsa~~~~---m~~~~Vd~VivGA 254 (363)
T PRK05772 190 APVKLA-KALG-MSVSVIAPETRPWLQGSRLTV------YELMEEGIKVTLI----TDTAVGLV---MYKDMVNNVMVGA 254 (363)
T ss_pred HHHHHH-HHCC-CeEEEEECCCCccchhHHHHH------HHHHHCCCCEEEE----ehhHHHHH---HhhcCCCEEEECc
Confidence 334433 3456 477777777766677766653 1222224333222 12222222 1124799999999
Q ss_pred CCCCcccccccchhhHHHHHHHHHcCCCeeEEe
Q 021451 111 NMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (312)
Q Consensus 111 N~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S 143 (312)
..=.-.|.-+.-.||..-|+-|-.+|||-+.++
T Consensus 255 D~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~a 287 (363)
T PRK05772 255 DRILRDGHVFNKIGTFKEAVIAHELGIPFYALA 287 (363)
T ss_pred cEEecCCCEeehhhhHHHHHHHHHhCCCEEEEc
Confidence 887777878899999999999999999999886
No 59
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=28.71 E-value=64 Score=30.51 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=27.5
Q ss_pred CeEEEe-CCCCCCCccHHHHHHHHHhcCCccEEEEeeCC
Q 021451 15 PTIMVT-NDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (312)
Q Consensus 15 ~~ILlT-NDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~ 52 (312)
||||++ +=-|-+.-....|++.|++.| |+|.++....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g-~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRG-WEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCC-CEEEEEECCC
Confidence 678887 435544444558999999998 8999998844
No 60
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=28.69 E-value=22 Score=26.45 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=15.2
Q ss_pred EEeCCCCCCCc-cHHHHHHHHHhcC
Q 021451 18 MVTNDDGIDAP-GLRSLVRVLVSTN 41 (312)
Q Consensus 18 LlTNDDGi~s~-Gi~~L~~~L~~~g 41 (312)
||||+||--|. +.--+.-+|...|
T Consensus 3 LiTN~dGrLSTT~~iQffg~lv~ag 27 (60)
T PF10841_consen 3 LITNADGRLSTTAFIQFFGALVMAG 27 (60)
T ss_pred cccCCCCcEehHHHHHHHHHHHHHH
Confidence 89999998773 4444455554433
No 61
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=28.00 E-value=82 Score=31.33 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=39.6
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEe
Q 021451 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (312)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S 143 (312)
++.|+||.|-..=.-.|.-+.-.||...|+-|-.+|||.+.+.
T Consensus 237 ~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~A 279 (356)
T PRK08334 237 GKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVA 279 (356)
T ss_pred cCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEc
Confidence 4799999999888888888999999999999999999999876
No 62
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=27.70 E-value=72 Score=31.64 Aligned_cols=55 Identities=27% Similarity=0.286 Sum_probs=36.7
Q ss_pred CChHHHHHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEE
Q 021451 84 GTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI 142 (312)
Q Consensus 84 GTPaDcV~~al~~~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~ 142 (312)
-.+=.+..-=+. .+-+.+||+||.||- -|.|..=.-.|+|+.|.+- ..|||+|+-
T Consensus 63 en~eea~~~i~~-mv~~~~pD~viaGPa--FnagrYG~acg~v~~aV~e-~~~IP~vta 117 (349)
T PF07355_consen 63 ENKEEALKKILE-MVKKLKPDVVIAGPA--FNAGRYGVACGEVAKAVQE-KLGIPVVTA 117 (349)
T ss_pred hCHHHHHHHHHH-HHHhcCCCEEEEcCC--cCCchHHHHHHHHHHHHHH-hhCCCEEEE
Confidence 344444444343 243458999999985 4777766667888776654 479999953
No 63
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=27.27 E-value=1e+02 Score=28.00 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=27.7
Q ss_pred ccCCCCCeEEEeCCCCCCCccHHHHHHHHHhcCC
Q 021451 9 VNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNR 42 (312)
Q Consensus 9 ~~~~~~~~ILlTNDDGi~s~Gi~~L~~~L~~~g~ 42 (312)
...+....|.||=|||........+.+.|++.+.
T Consensus 31 ~~~~~~k~VaLTFDDGp~~~~t~~lL~~L~~~~v 64 (224)
T TIGR02884 31 LGDTSKKVIYLTFDNGYENGYTPKILDVLKEKKV 64 (224)
T ss_pred ecCCCCCEEEEEEECCCCccchHHHHHHHHHcCC
Confidence 3345667899999999987778889999998773
No 64
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.99 E-value=2.2e+02 Score=28.10 Aligned_cols=97 Identities=16% Similarity=0.083 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccCCCCCCcEEEec
Q 021451 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISG 109 (312)
Q Consensus 30 i~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVvSG 109 (312)
+..|..+.+ .| .+..|++.++--...|+.+|. ++....|.++..+ .|+....+ +-.++.|.||.|
T Consensus 169 l~~l~~A~~-~g-k~~~V~v~EtRP~~qG~rlta------~eL~~~GI~vtlI----~Dsa~~~~---M~~~~Vd~VivG 233 (339)
T PRK06036 169 LGVIRSAVE-QG-KEIKVIACETRPLNQGSRLTT------WELMQDNIPVTLI----TDSMAGIV---MRQGMVDKVIVG 233 (339)
T ss_pred HHHHHHHHH-cC-CceEEEEcCCCchhhHHHHHH------HHHHHcCCCEEEE----ehhHHHHH---hccCCCCEEEEC
Confidence 345555543 44 356666666655666665542 1222224443332 13222211 212469999999
Q ss_pred CCCC-CcccccccchhhHHHHHHHHHcCCCeeEEe
Q 021451 110 INMG-SNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (312)
Q Consensus 110 IN~G-~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S 143 (312)
-..= .| | -+.-.||-.-|+-|..+|||-+.+.
T Consensus 234 Ad~I~an-G-v~NKiGT~~lA~~Ak~~~vPfyV~a 266 (339)
T PRK06036 234 ADRITRD-A-VFNKIGTYTHSVLAKEHEIPFYVAA 266 (339)
T ss_pred ccchhhc-C-eehhhhHHHHHHHHHHhCCCEEEEe
Confidence 7643 35 7 6789999999999999999999875
No 65
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=25.81 E-value=57 Score=26.56 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccc
Q 021451 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSI 61 (312)
Q Consensus 16 ~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~si 61 (312)
=||+|.|. -+..+.+.|++.| .+|+|++. .+.+++.+
T Consensus 99 ivLvSgD~-----Df~~~v~~l~~~g-~~V~v~~~---~~~~s~~L 135 (146)
T PF01936_consen 99 IVLVSGDS-----DFAPLVRKLRERG-KRVIVVGA---EDSASEAL 135 (146)
T ss_dssp EEEE---G-----GGHHHHHHHHHH---EEEEEE----GGGS-HHH
T ss_pred EEEEECcH-----HHHHHHHHHHHcC-CEEEEEEe---CCCCCHHH
Confidence 38888883 3566777788888 68999984 34444433
No 66
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=25.78 E-value=56 Score=28.59 Aligned_cols=26 Identities=46% Similarity=0.603 Sum_probs=21.3
Q ss_pred ccchhhHHHHHHHHHcCCCeeEEeee
Q 021451 120 VVYSGTVAGAREAFFHGVPSVSISYD 145 (312)
Q Consensus 120 v~~SGTVgAA~ea~l~GiPaIA~S~~ 145 (312)
++-|+-+-++.-|..+|+|+|+++.+
T Consensus 260 ~~Is~RlH~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 260 LVISMRLHGAILALSLGVPVIAISYD 285 (286)
T ss_pred EEEecCCHHHHHHHHcCCCEEEEecC
Confidence 33456788999999999999999874
No 67
>PRK11249 katE hydroperoxidase II; Provisional
Probab=25.57 E-value=2.3e+02 Score=31.03 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=33.1
Q ss_pred CCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCC
Q 021451 13 HKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (312)
Q Consensus 13 ~~~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~ 52 (312)
++++|.|-=.||.....+..++++|+++| .+|.||+|..
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AG-a~V~VVSp~~ 634 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKG-VHAKLLYPRM 634 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCC-CEEEEEECCC
Confidence 45666666678999999999999999999 6999999965
No 68
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=25.39 E-value=60 Score=30.26 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=60.8
Q ss_pred EEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhc
Q 021451 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQ 96 (312)
Q Consensus 17 ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~ 96 (312)
.+||- |+.+.=.+.|.+ +.+.| -++.|..+++--..-|+.+ ++.+...|..+..+ |-.++...+.
T Consensus 110 ~ILT~--~~S~~v~~~l~~-a~~~~-~~~~V~v~es~P~~eG~~~-------a~~L~~~gi~v~~i---~d~~~~~~m~- 174 (282)
T PF01008_consen 110 TILTH--GYSSTVERFLLS-AKKKG-KKFRVIVLESRPYNEGRLM-------AKELAEAGIPVTLI---PDSAVGYVMP- 174 (282)
T ss_dssp EEEEE--S--SHHHHHHHH-HHHTT-EEEEEEEE--TTTTHHHTH-------HHHHHHTT-EEEEE----GGGHHHHHH-
T ss_pred EEEEe--CCchHHHHHHHH-HHHcC-CeEEEEEccCCcchhhhhH-------HHHhhhcceeEEEE---echHHHHHHH-
Confidence 44553 344443444555 44445 4677777776555555322 11221124332222 2233333332
Q ss_pred cCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeec
Q 021451 97 ALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW 146 (312)
Q Consensus 97 ~l~~~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~ 146 (312)
.+.|.||.|--.=-.-|.-+.-.||...|+-|-.+++|.+.++-.+
T Consensus 175 ----~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~ 220 (282)
T PF01008_consen 175 ----RDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESY 220 (282)
T ss_dssp ----CTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GG
T ss_pred ----HhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccc
Confidence 1499999998877777888899999999999999999999998643
No 69
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=25.10 E-value=78 Score=29.32 Aligned_cols=32 Identities=38% Similarity=0.398 Sum_probs=23.2
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeec
Q 021451 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW 146 (312)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~ 146 (312)
.+||||||=...- ++..|...|+|+|.++...
T Consensus 93 ~~pDlVIsD~~~~--------------~~~aa~~~giP~i~i~~~~ 124 (318)
T PF13528_consen 93 FRPDLVISDFYPL--------------AALAARRAGIPVIVISNQY 124 (318)
T ss_pred cCCCEEEEcChHH--------------HHHHHHhcCCCEEEEEehH
Confidence 5899999843211 3456678999999999753
No 70
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=24.84 E-value=86 Score=30.25 Aligned_cols=43 Identities=23% Similarity=0.092 Sum_probs=39.0
Q ss_pred CCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEee
Q 021451 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (312)
Q Consensus 102 ~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~ 144 (312)
+.|.||-|-..=.--|.-+.-+||-..|+-|..+++|.+.++-
T Consensus 188 ~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~ 230 (310)
T PRK08535 188 DVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAE 230 (310)
T ss_pred hCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecc
Confidence 5999999998877778888999999999999999999999864
No 71
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=24.48 E-value=1e+02 Score=29.58 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHhcCCccEEEEeeCC
Q 021451 28 PGLRSLVRVLVSTNRYTVQVCAPDS 52 (312)
Q Consensus 28 ~Gi~~L~~~L~~~g~~~V~VVAP~~ 52 (312)
.-+..|+++|.+.| |+|+|+++..
T Consensus 24 ~~v~~la~~L~~~G-~~V~v~~~~~ 47 (405)
T TIGR03449 24 VYILETATELARRG-IEVDIFTRAT 47 (405)
T ss_pred ehHHHHHHHHhhCC-CEEEEEeccc
Confidence 34788999999999 8999999864
No 72
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=24.41 E-value=93 Score=30.59 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=27.7
Q ss_pred CCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeC
Q 021451 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (312)
Q Consensus 14 ~~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~ 51 (312)
+..||.++|=|.+ +=+.-+++.|.+.| |+|.|+++.
T Consensus 5 ~~~~~~~~~~~~~-~R~~~~a~~L~~~G-~~V~ii~~~ 40 (415)
T cd03816 5 RVCVLVLGDIGRS-PRMQYHALSLAKHG-WKVDLVGYL 40 (415)
T ss_pred EEEEEEecccCCC-HHHHHHHHHHHhcC-ceEEEEEec
Confidence 4458888886555 45566889999999 899999874
No 73
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=24.36 E-value=96 Score=26.98 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=26.6
Q ss_pred CCCCeEEEeCCCCCCCccHHHHHHHHHhcCC
Q 021451 12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNR 42 (312)
Q Consensus 12 ~~~~~ILlTNDDGi~s~Gi~~L~~~L~~~g~ 42 (312)
++...|.||=|||+.......+.+.|++.+.
T Consensus 3 ~~~k~V~LTFDDgp~~~~t~~~l~~L~~~~i 33 (191)
T TIGR02764 3 TSDKKIALTFDISWGNDYTEPILDTLKEYDV 33 (191)
T ss_pred CCCCEEEEEEECCCCcccHHHHHHHHHHcCC
Confidence 5567799999999998788889999998874
No 74
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=24.04 E-value=1.2e+02 Score=27.41 Aligned_cols=27 Identities=22% Similarity=0.110 Sum_probs=21.7
Q ss_pred CccHHHHHHHHHhcCCccEEEEeeCCCC
Q 021451 27 APGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (312)
Q Consensus 27 s~Gi~~L~~~L~~~g~~~V~VVAP~~~~ 54 (312)
..-++.|+++|.+.| |+|.++.+....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~ 43 (394)
T cd03794 17 AFRTTELAEELVKRG-HEVTVITGSPNY 43 (394)
T ss_pred ceeHHHHHHHHHhCC-ceEEEEecCCCc
Confidence 345788999999988 899999986543
No 75
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=24.00 E-value=75 Score=29.23 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCccEEEEeeCC
Q 021451 30 LRSLVRVLVSTNRYTVQVCAPDS 52 (312)
Q Consensus 30 i~~L~~~L~~~g~~~V~VVAP~~ 52 (312)
...|.++|.+.| |+|.|+.|.-
T Consensus 22 ~~~L~kaL~~~G-~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQG-HDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT--EEEEEEE-T
T ss_pred HHHHHHHHHhcC-CeEEEEEccc
Confidence 467899999999 8999999965
No 76
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=23.89 E-value=1.1e+02 Score=29.66 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.0
Q ss_pred CccHHHHHHHHHhcCCccEEEEeeCC
Q 021451 27 APGLRSLVRVLVSTNRYTVQVCAPDS 52 (312)
Q Consensus 27 s~Gi~~L~~~L~~~g~~~V~VVAP~~ 52 (312)
+.-+..|.++|.+.| |+|+|++|..
T Consensus 17 e~~~~~la~~L~~~G-~~V~v~~~~~ 41 (398)
T cd03796 17 ETHIYQLSQCLIKRG-HKVVVITHAY 41 (398)
T ss_pred HHHHHHHHHHHHHcC-CeeEEEeccC
Confidence 345788999999999 8999999864
No 77
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=23.75 E-value=93 Score=29.75 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=38.8
Q ss_pred CCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEee
Q 021451 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (312)
Q Consensus 102 ~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~ 144 (312)
+.|.||-|-..=.--|.-+.-.||...|+-|..+|||-+.++-
T Consensus 177 ~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~ 219 (275)
T PRK08335 177 EATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAE 219 (275)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECc
Confidence 5999999998877778888999999999999999999998854
No 78
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=22.71 E-value=1.2e+02 Score=28.48 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=22.2
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcC-CccEEEEeeC
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTN-RYTVQVCAPD 51 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g-~~~V~VVAP~ 51 (312)
|+||||+-. .++ .+++.|+++| .++|+++-+.
T Consensus 2 ~~vLv~g~~----~~~-~~~~~l~~~~~g~~vi~~d~~ 34 (326)
T PRK12767 2 MNILVTSAG----RRV-QLVKALKKSLLKGRVIGADIS 34 (326)
T ss_pred ceEEEecCC----ccH-HHHHHHHHhccCCEEEEECCC
Confidence 679999773 334 7788888875 2577777655
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=22.45 E-value=86 Score=19.06 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.0
Q ss_pred CCCeEEEeCCCCCCCccHHHHHHHHH
Q 021451 13 HKPTIMVTNDDGIDAPGLRSLVRVLV 38 (312)
Q Consensus 13 ~~~~ILlTNDDGi~s~Gi~~L~~~L~ 38 (312)
+.++.|==+|..+..+|..+|.++|+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 35667778899999999999999986
No 80
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=22.43 E-value=72 Score=32.87 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=30.6
Q ss_pred CCCCeEEEe-C-CCCCCCccHHHHHHHHHhcCCccEEEEeeCCC
Q 021451 12 DHKPTIMVT-N-DDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (312)
Q Consensus 12 ~~~~~ILlT-N-DDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~ 53 (312)
.+.-|||.. . -.+=+-...+.+.++|.++| |+|+|+.|...
T Consensus 18 ~~~~kIl~~~P~~~~SH~~~~~~l~~~La~rG-H~VTvi~p~~~ 60 (507)
T PHA03392 18 VRAARILAVFPTPAYSHHSVFKVYVEALAERG-HNVTVIKPTLR 60 (507)
T ss_pred cCcccEEEEcCCCCCcHHHHHHHHHHHHHHcC-CeEEEEecccc
Confidence 345568865 3 33444568899999999999 99999999753
No 81
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=22.18 E-value=1.2e+02 Score=30.00 Aligned_cols=44 Identities=30% Similarity=0.200 Sum_probs=39.3
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEee
Q 021451 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (312)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~ 144 (312)
++.|.||.|-..=.--|.-+.-.||...|+-|-.+|||-+.+.-
T Consensus 224 ~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~ 267 (344)
T PRK05720 224 GKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAP 267 (344)
T ss_pred cCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecc
Confidence 47999999998887778889999999999999999999887754
No 82
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=21.99 E-value=94 Score=26.73 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.2
Q ss_pred CCCCccHHHHHHHHHhcC
Q 021451 24 GIDAPGLRSLVRVLVSTN 41 (312)
Q Consensus 24 Gi~s~Gi~~L~~~L~~~g 41 (312)
.+.+||...+++.|++.|
T Consensus 26 ~~~~~~~~~a~~~l~~~G 43 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNG 43 (157)
T ss_pred CcCCHHHHHHHHHHHHcC
Confidence 377889998888887654
No 83
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=21.91 E-value=1.2e+02 Score=28.67 Aligned_cols=44 Identities=25% Similarity=0.108 Sum_probs=38.6
Q ss_pred CCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeee
Q 021451 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (312)
Q Consensus 102 ~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~ 145 (312)
+.|.||-|-..=.--|.-+.-.||-..|+.|..+++|.+.+.-.
T Consensus 151 ~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s 194 (253)
T PRK06372 151 NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTIS 194 (253)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeec
Confidence 69999999887766777789999999999999999999987654
No 84
>PF11805 DUF3326: Protein of unknown function (DUF3326); InterPro: IPR021763 This family of functionally uncharacterised proteins is found in plants and bacteria.
Probab=21.83 E-value=72 Score=31.40 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=36.5
Q ss_pred CChHHHHHHhhhccCCCCCCcEEEecC-CC------CCcccccccchhhHH--HHHHHHHcCCCeeEEe
Q 021451 84 GTPADCASLGVSQALFPSVPDLVISGI-NM------GSNCGYHVVYSGTVA--GAREAFFHGVPSVSIS 143 (312)
Q Consensus 84 GTPaDcV~~al~~~l~~~~PDLVvSGI-N~------G~N~g~~v~~SGTVg--AA~ea~l~GiPaIA~S 143 (312)
=|=.-||..||.. .|++|-+.- +. ..+++--|.--|.+| +.+..+.+|+|.|||-
T Consensus 231 yTFLpcVL~GLsr-----AP~~v~~~~~~~~~~~i~a~~VdaVV~P~~a~Gg~~vLa~~~~~~piIaV~ 294 (340)
T PF11805_consen 231 YTFLPCVLVGLSR-----APQFVTSRSAPRQPGDIWADDVDAVVVPATACGGSAVLAFAERGIPIIAVE 294 (340)
T ss_pred ccchhhHhhcccc-----CCceeeccCCCCCCCceeHhhCCEEEeCCCccCCHHHHHHHHcCCeEEEEe
Confidence 3556799999964 689998221 11 122333356777886 6667778999999993
No 85
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=21.78 E-value=86 Score=31.01 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCC
Q 021451 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (312)
Q Consensus 30 i~~L~~~L~~~g~~~V~VVAP~~~~ 54 (312)
+..|.++|.+.| |+|.|+.|.-.+
T Consensus 22 ~~~L~~aL~~~G-~~V~Vi~p~y~~ 45 (476)
T cd03791 22 VGALPKALAKLG-HDVRVIMPKYGR 45 (476)
T ss_pred HHHHHHHHHHCC-CeEEEEecCCcc
Confidence 567999999999 899999997654
No 86
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=21.59 E-value=5.4e+02 Score=25.06 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHH--------HHHhhhccCCCC
Q 021451 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADC--------ASLGVSQALFPS 101 (312)
Q Consensus 30 i~~L~~~L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDc--------V~~al~~~l~~~ 101 (312)
+.+..+++++.+..++++|.+..+-.-.-... ...+++...+ . ...-+-.|+.+ +.+|+.. +-.+
T Consensus 10 v~aa~~a~~~~~~~~~iLvGd~~~I~~~l~~~--~~~i~Ii~a~--~--~i~m~e~p~~alR~kk~ss~~~A~~l-Vk~G 82 (322)
T TIGR00182 10 IDGVLKYASANQDLHIILVGDKDAIEPHLDKL--PKNITIIHAQ--S--VIEMTDTPVRAIRRKVNSSMQLAMNL-VKEG 82 (322)
T ss_pred HHHHHHHHHhCCCceEEEEcCHHHHHHHHHhC--CCCcEEECCC--C--ccccCcchHHHHHhcCCCHHHHHHHH-HHCC
Confidence 56677777777766888888765310000000 0112222221 0 11122266666 6677763 4457
Q ss_pred CCcEEEec
Q 021451 102 VPDLVISG 109 (312)
Q Consensus 102 ~PDLVvSG 109 (312)
+-|.+|||
T Consensus 83 ~ADa~VSg 90 (322)
T TIGR00182 83 RADAVISA 90 (322)
T ss_pred CCCEEEeC
Confidence 89999999
No 87
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=21.52 E-value=1.3e+02 Score=26.90 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=23.2
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEe
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVA 49 (312)
.-|||| ||.....+...++.|++.| -.|++|+
T Consensus 111 vvillT--DG~s~~~~~~~a~~lk~~g-v~i~~Vg 142 (224)
T cd01475 111 VGIVVT--DGRPQDDVSEVAAKARALG-IEMFAVG 142 (224)
T ss_pred EEEEEc--CCCCcccHHHHHHHHHHCC-cEEEEEe
Confidence 336777 8877777888888888877 3666664
No 88
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=21.51 E-value=91 Score=27.82 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=27.0
Q ss_pred EEeCCCCCCCccHHHHHHHHHhcCCccEEEEeeCCCCC
Q 021451 18 MVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (312)
Q Consensus 18 LlTNDDGi~s~Gi~~L~~~L~~~g~~~V~VVAP~~~~S 55 (312)
++++-.|-...-++.|.+.|.+.| |+|.++.+.....
T Consensus 4 ~i~~~~~g~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 40 (359)
T cd03808 4 HIVTVDGGLYSFRLPLIKALRAAG-YEVHVVAPPGDEL 40 (359)
T ss_pred EEEecchhHHHHHHHHHHHHHhcC-CeeEEEecCCCcc
Confidence 344444444566888999998888 8999999876554
No 89
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.14 E-value=1.4e+02 Score=29.46 Aligned_cols=44 Identities=27% Similarity=0.191 Sum_probs=39.2
Q ss_pred CCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEee
Q 021451 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (312)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~ 144 (312)
++.|+||.|-..=.--|.-+.-.||...|+-|-.+|||-+.+.-
T Consensus 214 ~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 214 KEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred cCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEecc
Confidence 47999999988877778788999999999999999999998863
No 90
>PRK12342 hypothetical protein; Provisional
Probab=21.02 E-value=1.6e+02 Score=27.74 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=25.9
Q ss_pred CCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeee
Q 021451 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (312)
Q Consensus 102 ~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~ 145 (312)
.||||+.|- ...-.++|-||+.+ |.++|+|.|..-..
T Consensus 109 ~~DLVl~G~------~s~D~~tgqvg~~l-A~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGE------GSGDLYAQQVGLLL-GELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcC------CcccCCCCCHHHHH-HHHhCCCcEeeEEE
Confidence 599999992 22234677787654 56789999987654
No 91
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=20.72 E-value=4e+02 Score=24.28 Aligned_cols=49 Identities=27% Similarity=0.293 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCeeEEeeec-cCCCCCCcccH----HHHHHHHHHHHHHHHHHH
Q 021451 127 AGAREAFFHGVPSVSISYDW-VGGKSNVNDYT----LAAEACLPIINAILAEIR 175 (312)
Q Consensus 127 gAA~ea~l~GiPaIA~S~~~-~~~~~~~~~~~----~aa~~~~~li~~l~~~~~ 175 (312)
+.|.-+..+|+|.+++=.-. .-+.....+|+ .|++.+.+++..+++.+.
T Consensus 175 Ava~v~~~~~vpfl~iR~ISD~a~~~~~~~~~~~~~~aa~~~~~~~~~~l~~~~ 228 (233)
T PRK14697 175 AIGHVAYINEVPFLVIRCISDSADDEAQISYDDFAKTAANYCSEIIVEMLKNIS 228 (233)
T ss_pred HHHHHHHHcCCCEEEEEEeccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455568999999874321 11112223444 666666677766665543
No 92
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=20.71 E-value=8.9e+02 Score=24.88 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=20.9
Q ss_pred CeEEEeCCCCCCCccHHHHHHHHHhc--CCccEEEEeeCCC
Q 021451 15 PTIMVTNDDGIDAPGLRSLVRVLVST--NRYTVQVCAPDSE 53 (312)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~~L~~~L~~~--g~~~V~VVAP~~~ 53 (312)
|||||.---|- -++|+.+|++. + .+|+++ |...
T Consensus 1 mkVLviG~Ggr----ehal~~~l~~s~~g-~~v~~~-~g~~ 35 (486)
T PRK05784 1 MKVLLVGDGAR----EHALAEALEKSTKG-YKVYAL-SSYL 35 (486)
T ss_pred CEEEEECCchh----HHHHHHHHHhCCCC-CEEEEE-ECCC
Confidence 67999533322 46788888876 6 467666 6533
No 93
>PRK09864 putative peptidase; Provisional
Probab=20.59 E-value=1.5e+02 Score=29.38 Aligned_cols=134 Identities=12% Similarity=0.032 Sum_probs=74.2
Q ss_pred cHHHHHHHHHhcC--CccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhc---cCCCCCC
Q 021451 29 GLRSLVRVLVSTN--RYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQ---ALFPSVP 103 (312)
Q Consensus 29 Gi~~L~~~L~~~g--~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~---~l~~~~P 103 (312)
|..+|.++|+... ..+|+.|+-..+-=|...+.+... .++ -.-+.+++.||++.+--.-.. .-+.+.|
T Consensus 179 g~~~lle~l~~l~~~~~~vy~v~TvQEEvGlrGA~~aa~-----~i~--PDiaIavDvt~~~d~p~~~~~~~~~~lG~Gp 251 (356)
T PRK09864 179 GCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAE-----HIK--PDVVIVLDTAVAGDVPGIDNIKYPLKLGQGP 251 (356)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEEcchhcchHHHHHHHh-----cCC--CCEEEEEecccCCCCCCCcccccccccCCCC
Confidence 6677777776542 247888888777666655444321 121 123678888886543211110 0012345
Q ss_pred cEEEe--cCCCC-------------Cccccc--ccc-hhhHHHHHHHHHcCCCeeEEeeeccCCCC-----CCcccHHHH
Q 021451 104 DLVIS--GINMG-------------SNCGYH--VVY-SGTVAGAREAFFHGVPSVSISYDWVGGKS-----NVNDYTLAA 160 (312)
Q Consensus 104 DLVvS--GIN~G-------------~N~g~~--v~~-SGTVgAA~ea~l~GiPaIA~S~~~~~~~~-----~~~~~~~aa 160 (312)
=|.+- |.+.- .|+-.. +.. .||=|+|+.-...|+|++.+|...+--+. +..|++.+.
T Consensus 252 ~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~~ 331 (356)
T PRK09864 252 GLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALL 331 (356)
T ss_pred eEEEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCCCCcEEEEeeccCcCCCcceEeEHHHHHHHH
Confidence 55332 33322 222222 222 38999999999999999999997532111 224677666
Q ss_pred HHHHHHHHH
Q 021451 161 EACLPIINA 169 (312)
Q Consensus 161 ~~~~~li~~ 169 (312)
++...+++.
T Consensus 332 ~Ll~~~~~~ 340 (356)
T PRK09864 332 TLIRDFLTT 340 (356)
T ss_pred HHHHHHHHh
Confidence 666555543
No 94
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=20.36 E-value=1.1e+02 Score=24.14 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=25.8
Q ss_pred CCCCCeEEEeCCCCCCCc-cHHHHHHHHHhcCCccEEE
Q 021451 11 SDHKPTIMVTNDDGIDAP-GLRSLVRVLVSTNRYTVQV 47 (312)
Q Consensus 11 ~~~~~~ILlTNDDGi~s~-Gi~~L~~~L~~~g~~~V~V 47 (312)
..+..+|||. ||-+.+= =++...+.|+++|...|.+
T Consensus 85 ~~~gk~vliV-DDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 85 DIKGKRVLIV-DDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp SGTTSEEEEE-EEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred cccceeEEEE-eeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 4567889999 7877763 2778889999998434433
No 95
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.01 E-value=1.2e+02 Score=28.51 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=27.0
Q ss_pred CCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCeeEEeeec
Q 021451 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW 146 (312)
Q Consensus 102 ~PDLVvSGIN~G~N~g~~v~~SGTVgAA~ea~l~GiPaIA~S~~~ 146 (312)
.|||||.|- ...-.++|-||+. -|.++|+|.|..-...
T Consensus 112 ~~DLVl~G~------~s~D~~tgqvg~~-lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 112 GFDLILCGD------GSSDLYAQQVGLL-VGEILNIPAINGVSKI 149 (256)
T ss_pred CCCEEEEcC------ccccCCCCcHHHH-HHHHhCCCceeeEEEE
Confidence 599999992 2223477888764 4567899999876543
Done!