Query 021452
Match_columns 312
No_of_seqs 169 out of 592
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2688 Transcription-associat 100.0 1.8E-66 3.9E-71 492.8 25.2 293 6-307 93-393 (394)
2 COG5600 Transcription-associat 100.0 2.3E-59 5E-64 435.8 26.1 258 44-306 143-411 (413)
3 KOG2581 26S proteasome regulat 100.0 5.4E-32 1.2E-36 254.7 21.2 213 68-297 205-422 (493)
4 KOG1464 COP9 signalosome, subu 99.8 2.3E-19 4.9E-24 163.0 17.6 231 47-299 161-410 (440)
5 PF01399 PCI: PCI domain; Int 99.7 2.5E-15 5.3E-20 118.6 12.9 103 183-298 2-105 (105)
6 KOG1463 26S proteasome regulat 99.1 4.9E-09 1.1E-13 98.2 15.7 207 74-296 170-388 (411)
7 KOG2908 26S proteasome regulat 99.0 2E-07 4.4E-12 87.4 23.5 218 68-300 111-341 (380)
8 KOG2582 COP9 signalosome, subu 99.0 2.8E-08 6.2E-13 93.9 15.9 179 108-303 176-364 (422)
9 COG5159 RPN6 26S proteasome re 98.6 3.3E-06 7.2E-11 78.1 18.3 210 68-296 161-386 (421)
10 smart00753 PAM PCI/PINT associ 98.2 6.5E-06 1.4E-10 63.1 8.3 66 218-300 6-71 (88)
11 smart00088 PINT motif in prote 98.2 6.5E-06 1.4E-10 63.1 8.3 66 218-300 6-71 (88)
12 KOG2753 Uncharacterized conser 97.6 0.022 4.8E-07 53.9 21.9 234 46-299 40-340 (378)
13 PF10255 Paf67: RNA polymerase 97.5 0.0092 2E-07 58.5 18.3 194 67-278 118-346 (404)
14 KOG1497 COP9 signalosome, subu 97.2 0.014 3.1E-07 55.1 14.5 213 72-305 144-369 (399)
15 PF07719 TPR_2: Tetratricopept 96.4 0.007 1.5E-07 37.1 4.4 32 116-147 2-33 (34)
16 COG5187 RPN7 26S proteasome re 96.1 0.31 6.7E-06 45.9 15.0 207 67-296 150-374 (412)
17 KOG1498 26S proteasome regulat 96.1 1.4 2.9E-05 43.1 19.6 209 74-298 133-398 (439)
18 KOG0687 26S proteasome regulat 95.9 0.55 1.2E-05 44.8 15.7 208 66-296 138-360 (393)
19 KOG1076 Translation initiation 95.6 0.76 1.6E-05 47.7 16.9 176 111-301 523-766 (843)
20 PF13371 TPR_9: Tetratricopept 95.4 0.06 1.3E-06 38.8 6.2 63 78-149 1-63 (73)
21 PF13432 TPR_16: Tetratricopep 95.3 0.13 2.7E-06 36.3 7.5 62 78-148 3-64 (65)
22 KOG0686 COP9 signalosome, subu 95.1 0.16 3.4E-06 49.6 9.6 161 117-296 231-408 (466)
23 PF00515 TPR_1: Tetratricopept 94.4 0.093 2E-06 32.2 4.3 31 117-147 3-33 (34)
24 KOG2758 Translation initiation 94.3 1.6 3.4E-05 41.8 13.9 98 185-299 292-395 (432)
25 COG5071 RPN5 26S proteasome re 93.2 8.1 0.00018 36.8 18.1 210 73-299 132-399 (439)
26 PF12895 Apc3: Anaphase-promot 92.7 0.42 9.2E-06 35.6 6.2 54 78-141 31-84 (84)
27 PF04733 Coatomer_E: Coatomer 92.6 0.58 1.3E-05 44.0 8.3 129 68-205 127-288 (290)
28 PF13174 TPR_6: Tetratricopept 92.2 0.23 4.9E-06 29.8 3.4 31 118-148 3-33 (33)
29 PF13424 TPR_12: Tetratricopep 92.2 0.79 1.7E-05 33.4 7.0 71 71-145 4-76 (78)
30 PF13181 TPR_8: Tetratricopept 91.7 0.4 8.7E-06 29.1 4.1 31 116-146 2-32 (34)
31 PF14938 SNAP: Soluble NSF att 91.6 3 6.6E-05 38.6 11.8 133 46-208 130-262 (282)
32 TIGR02552 LcrH_SycD type III s 91.3 1.7 3.6E-05 34.8 8.7 66 76-150 55-120 (135)
33 cd00189 TPR Tetratricopeptide 91.0 2.5 5.5E-05 29.4 8.6 63 75-146 37-99 (100)
34 PF13414 TPR_11: TPR repeat; P 90.6 1.6 3.6E-05 30.7 7.1 62 75-146 6-69 (69)
35 cd00189 TPR Tetratricopeptide 90.1 3.8 8.2E-05 28.5 8.9 64 77-149 5-68 (100)
36 PRK15359 type III secretion sy 89.4 3.1 6.8E-05 34.5 8.9 74 76-158 62-137 (144)
37 PF13414 TPR_11: TPR repeat; P 89.3 1 2.2E-05 31.8 5.2 34 116-149 4-37 (69)
38 PF09012 FeoC: FeoC like trans 89.1 0.79 1.7E-05 33.3 4.4 38 246-288 12-49 (69)
39 PF13428 TPR_14: Tetratricopep 87.9 0.98 2.1E-05 29.5 3.9 32 118-149 4-35 (44)
40 PF09976 TPR_21: Tetratricopep 87.0 5.5 0.00012 32.8 8.9 56 77-142 90-145 (145)
41 TIGR02795 tol_pal_ybgF tol-pal 86.5 4.6 0.0001 30.9 7.8 68 76-149 43-110 (119)
42 KOG2072 Translation initiation 85.6 2.9 6.3E-05 44.3 7.6 72 219-303 426-497 (988)
43 smart00028 TPR Tetratricopepti 85.4 1.6 3.4E-05 24.3 3.6 30 117-146 3-32 (34)
44 PF10602 RPN7: 26S proteasome 83.2 14 0.0003 32.0 10.0 93 72-167 73-168 (177)
45 KOG2300 Uncharacterized conser 82.9 22 0.00048 36.0 12.1 136 66-205 398-552 (629)
46 PF13176 TPR_7: Tetratricopept 82.3 2.4 5.2E-05 26.5 3.6 27 119-145 3-29 (36)
47 PF13424 TPR_12: Tetratricopep 80.3 4.8 0.0001 29.1 5.2 33 113-145 3-35 (78)
48 KOG3081 Vesicle coat complex C 77.8 20 0.00044 33.5 9.3 100 67-171 132-258 (299)
49 TIGR02795 tol_pal_ybgF tol-pal 77.6 17 0.00037 27.6 8.0 66 77-148 7-72 (119)
50 PF14559 TPR_19: Tetratricopep 77.4 4.4 9.6E-05 28.3 4.1 57 83-148 2-58 (68)
51 PRK02603 photosystem I assembl 77.0 37 0.00079 28.6 10.5 74 68-148 31-105 (172)
52 COG3063 PilF Tfp pilus assembl 75.2 55 0.0012 30.1 11.3 87 51-147 9-101 (250)
53 PRK11788 tetratricopeptide rep 74.7 26 0.00056 33.2 9.9 71 74-148 143-213 (389)
54 PRK10803 tol-pal system protei 74.2 12 0.00027 34.5 7.2 63 81-149 152-214 (263)
55 PF13374 TPR_10: Tetratricopep 73.7 4.4 9.5E-05 25.2 3.0 29 118-146 5-33 (42)
56 PF03399 SAC3_GANP: SAC3/GANP/ 73.7 25 0.00054 30.5 8.8 139 110-259 51-203 (204)
57 TIGR02552 LcrH_SycD type III s 73.2 40 0.00086 26.6 9.3 65 75-148 20-84 (135)
58 PF13429 TPR_15: Tetratricopep 72.8 16 0.00035 33.3 7.6 69 74-149 112-180 (280)
59 TIGR01716 RGG_Cterm transcript 72.8 21 0.00046 31.3 8.2 73 71-146 127-199 (220)
60 PF14853 Fis1_TPR_C: Fis1 C-te 71.8 8.2 0.00018 26.8 4.1 34 116-149 2-35 (53)
61 TIGR02521 type_IV_pilW type IV 71.5 43 0.00093 28.0 9.7 63 74-145 67-129 (234)
62 PF13812 PPR_3: Pentatricopept 71.1 9.2 0.0002 22.6 3.9 30 74-103 3-32 (34)
63 PRK10866 outer membrane biogen 71.0 82 0.0018 28.6 14.4 65 79-149 39-103 (243)
64 TIGR02521 type_IV_pilW type IV 71.0 42 0.00091 28.1 9.5 69 72-149 31-99 (234)
65 TIGR03302 OM_YfiO outer membra 70.8 73 0.0016 27.9 11.5 32 117-148 168-199 (235)
66 PRK11788 tetratricopeptide rep 70.7 34 0.00074 32.3 9.7 69 74-147 71-139 (389)
67 TIGR03302 OM_YfiO outer membra 68.0 28 0.00061 30.5 8.0 67 77-149 38-104 (235)
68 PRK11189 lipoprotein NlpI; Pro 66.0 14 0.00029 34.5 5.7 38 116-153 237-274 (296)
69 PF08784 RPA_C: Replication pr 64.2 15 0.00033 28.5 4.8 36 247-287 64-99 (102)
70 PLN03088 SGT1, suppressor of 63.8 42 0.00091 32.3 8.8 65 76-149 40-104 (356)
71 PF09756 DDRGK: DDRGK domain; 63.7 14 0.00031 32.5 5.0 48 247-299 112-159 (188)
72 PRK10370 formate-dependent nit 63.4 50 0.0011 28.9 8.5 80 70-149 14-107 (198)
73 COG1729 Uncharacterized protei 63.2 24 0.00053 32.7 6.6 69 74-149 144-212 (262)
74 PRK15363 pathogenicity island 63.1 21 0.00046 30.5 5.8 31 116-146 104-134 (157)
75 PF10075 PCI_Csn8: COP9 signal 62.8 31 0.00066 28.5 6.7 77 184-277 44-121 (143)
76 PF13432 TPR_16: Tetratricopep 62.4 14 0.0003 25.5 4.0 30 119-148 1-30 (65)
77 PF07721 TPR_4: Tetratricopept 62.2 9.5 0.0002 22.0 2.5 23 117-139 3-25 (26)
78 PRK10803 tol-pal system protei 62.1 46 0.001 30.8 8.4 67 78-150 186-252 (263)
79 KOG2300 Uncharacterized conser 62.1 1.9E+02 0.0041 29.6 12.8 133 111-253 363-525 (629)
80 PF09976 TPR_21: Tetratricopep 61.2 80 0.0017 25.7 9.0 59 76-140 52-110 (145)
81 COG1522 Lrp Transcriptional re 59.2 20 0.00043 29.6 5.0 41 246-291 20-60 (154)
82 PRK02603 photosystem I assembl 58.7 35 0.00077 28.7 6.5 37 110-146 30-66 (172)
83 PHA02992 hypothetical protein; 58.3 59 0.0013 34.3 8.9 43 183-225 69-112 (728)
84 PRK11179 DNA-binding transcrip 57.8 23 0.0005 29.7 5.1 36 246-286 21-56 (153)
85 PRK11169 leucine-responsive tr 57.4 31 0.00067 29.3 5.9 39 245-288 25-63 (164)
86 KOG2002 TPR-containing nuclear 57.2 1.4E+02 0.0031 32.7 11.7 92 43-147 248-339 (1018)
87 CHL00033 ycf3 photosystem I as 56.7 76 0.0016 26.4 8.2 69 74-144 74-142 (168)
88 PRK15331 chaperone protein Sic 55.9 22 0.00048 30.7 4.7 69 78-155 77-145 (165)
89 PF13041 PPR_2: PPR repeat fam 55.6 25 0.00055 23.1 4.1 31 73-103 4-34 (50)
90 TIGR02917 PEP_TPR_lipo putativ 55.4 1.4E+02 0.003 30.9 11.5 64 77-149 164-227 (899)
91 PF09295 ChAPs: ChAPs (Chs5p-A 54.7 76 0.0016 31.3 8.8 79 72-164 234-312 (395)
92 PF08631 SPO22: Meiosis protei 54.3 58 0.0013 30.0 7.7 85 83-168 4-98 (278)
93 PF02064 MAS20: MAS20 protein 54.1 33 0.00071 28.1 5.2 40 121-162 69-108 (121)
94 PRK11189 lipoprotein NlpI; Pro 54.0 1.8E+02 0.004 26.9 12.3 58 81-148 73-131 (296)
95 PRK11906 transcriptional regul 53.9 24 0.00053 35.3 5.2 42 117-161 374-415 (458)
96 KOG3250 COP9 signalosome, subu 53.6 18 0.00039 32.7 3.9 95 182-297 60-154 (258)
97 PF13512 TPR_18: Tetratricopep 53.6 51 0.0011 27.7 6.4 65 78-149 53-133 (142)
98 PRK10049 pgaA outer membrane p 52.3 3.2E+02 0.0069 29.1 14.9 125 75-205 313-452 (765)
99 PF01325 Fe_dep_repress: Iron 51.5 63 0.0014 22.8 5.8 46 229-284 8-53 (60)
100 TIGR00756 PPR pentatricopeptid 51.4 32 0.0007 19.9 3.8 30 74-103 2-31 (35)
101 KOG4234 TPR repeat-containing 51.4 29 0.00062 31.4 4.7 88 120-210 100-195 (271)
102 PF08672 APC2: Anaphase promot 51.1 25 0.00053 25.1 3.6 37 248-284 11-52 (60)
103 TIGR02917 PEP_TPR_lipo putativ 50.9 72 0.0016 33.0 8.6 62 79-148 97-158 (899)
104 PRK15359 type III secretion sy 50.6 1.3E+02 0.0028 24.6 8.5 63 78-149 30-92 (144)
105 TIGR00990 3a0801s09 mitochondr 49.5 93 0.002 32.0 9.0 33 116-148 400-432 (615)
106 PF10602 RPN7: 26S proteasome 49.2 47 0.001 28.7 5.8 57 112-170 33-89 (177)
107 PRK10370 formate-dependent nit 48.7 1.2E+02 0.0026 26.5 8.4 18 79-96 80-97 (198)
108 PF10300 DUF3808: Protein of u 48.4 1.6E+02 0.0035 29.5 10.3 50 85-143 246-295 (468)
109 KOG1156 N-terminal acetyltrans 47.6 74 0.0016 33.3 7.6 38 110-147 366-403 (700)
110 PF01535 PPR: PPR repeat; Int 47.4 24 0.00053 20.1 2.7 27 74-100 2-28 (31)
111 PF10516 SHNi-TPR: SHNi-TPR; 47.2 30 0.00065 22.3 3.2 25 120-144 6-30 (38)
112 PF13412 HTH_24: Winged helix- 47.0 49 0.0011 21.7 4.4 33 247-284 16-48 (48)
113 PF01978 TrmB: Sugar-specific 46.8 98 0.0021 21.8 6.3 36 247-287 21-56 (68)
114 TIGR00990 3a0801s09 mitochondr 46.2 1.7E+02 0.0036 30.1 10.3 66 72-147 508-574 (615)
115 COG3071 HemY Uncharacterized e 46.0 25 0.00053 34.5 3.8 76 72-149 263-362 (400)
116 PRK14574 hmsH outer membrane p 45.8 1.8E+02 0.004 31.5 10.7 134 72-214 367-518 (822)
117 smart00344 HTH_ASNC helix_turn 45.6 44 0.00095 25.8 4.7 36 247-287 16-51 (108)
118 PF13525 YfiO: Outer membrane 45.4 49 0.0011 28.9 5.4 64 80-149 13-76 (203)
119 KOG1840 Kinesin light chain [C 45.1 2.9E+02 0.0064 28.2 11.5 98 47-146 215-314 (508)
120 PRK09954 putative kinase; Prov 45.0 68 0.0015 30.6 6.8 46 246-296 15-63 (362)
121 TIGR00540 hemY_coli hemY prote 45.0 44 0.00096 32.5 5.6 36 112-147 332-369 (409)
122 KOG3060 Uncharacterized conser 44.7 1.9E+02 0.0041 27.1 9.1 77 71-156 51-127 (289)
123 PHA02608 67 prohead core prote 44.3 1.1E+02 0.0023 23.1 6.0 21 185-205 2-22 (80)
124 KOG0543 FKBP-type peptidyl-pro 43.8 1.3E+02 0.0029 29.6 8.4 68 72-149 257-325 (397)
125 cd05804 StaR_like StaR_like; a 43.3 2.4E+02 0.0051 26.1 10.1 65 74-143 150-214 (355)
126 PF07219 HemY_N: HemY protein 43.0 62 0.0013 25.5 5.2 34 111-144 55-88 (108)
127 PF14559 TPR_19: Tetratricopep 42.5 45 0.00098 22.9 3.9 24 126-149 2-25 (68)
128 PF04190 DUF410: Protein of un 42.4 1.8E+02 0.0038 26.8 8.8 44 181-224 191-236 (260)
129 KOG4056 Translocase of outer m 41.6 31 0.00068 28.9 3.3 39 111-149 72-115 (143)
130 PLN03088 SGT1, suppressor of 39.9 1.6E+02 0.0035 28.2 8.5 61 79-149 9-70 (356)
131 PRK11447 cellulose synthase su 39.8 3.9E+02 0.0085 30.0 12.5 69 72-149 351-419 (1157)
132 PF13431 TPR_17: Tetratricopep 39.7 25 0.00054 21.6 1.9 21 116-136 14-34 (34)
133 PRK12370 invasion protein regu 39.4 1.7E+02 0.0038 29.7 9.1 61 79-149 345-406 (553)
134 PHA02695 hypothetical protein; 39.1 2.5E+02 0.0054 29.8 9.9 43 183-225 68-111 (725)
135 PRK15431 ferrous iron transpor 38.9 1E+02 0.0022 23.3 5.3 35 247-286 15-49 (78)
136 PF12895 Apc3: Anaphase-promot 38.8 32 0.0007 25.1 2.8 27 114-140 24-50 (84)
137 KOG3054 Uncharacterized conser 38.3 98 0.0021 28.6 6.1 48 246-298 212-259 (299)
138 PLN03098 LPA1 LOW PSII ACCUMUL 37.3 1.6E+02 0.0034 29.6 8.0 65 72-144 75-141 (453)
139 PF07729 FCD: FCD domain; Int 37.2 1.8E+02 0.0039 21.9 8.2 26 181-206 97-122 (125)
140 cd05804 StaR_like StaR_like; a 36.8 3.4E+02 0.0073 25.1 10.1 64 74-146 116-179 (355)
141 KOG4162 Predicted calmodulin-b 36.6 96 0.0021 33.1 6.5 61 75-144 721-783 (799)
142 PLN03081 pentatricopeptide (PP 36.5 3E+02 0.0064 28.8 10.5 59 73-143 260-318 (697)
143 PRK15174 Vi polysaccharide exp 35.6 2.2E+02 0.0048 29.8 9.3 15 274-288 538-552 (656)
144 KOG3785 Uncharacterized conser 34.7 83 0.0018 30.9 5.4 60 79-151 64-123 (557)
145 PF12854 PPR_1: PPR repeat 34.3 77 0.0017 19.3 3.5 26 73-98 8-33 (34)
146 PF09339 HTH_IclR: IclR helix- 34.1 1E+02 0.0022 20.6 4.5 33 247-284 17-49 (52)
147 COG1849 Uncharacterized protei 33.2 79 0.0017 24.5 4.0 30 114-143 40-69 (90)
148 PRK10866 outer membrane biogen 32.7 1.6E+02 0.0035 26.6 6.9 55 112-168 172-226 (243)
149 PRK10049 pgaA outer membrane p 32.5 2.1E+02 0.0046 30.4 8.7 63 77-148 364-426 (765)
150 PF13525 YfiO: Outer membrane 31.7 1.5E+02 0.0033 25.8 6.4 54 113-168 139-192 (203)
151 KOG1173 Anaphase-promoting com 31.5 57 0.0012 33.6 3.9 73 82-168 390-462 (611)
152 PLN03218 maturation of RBCL 1; 31.1 8E+02 0.017 27.6 18.2 62 74-143 581-642 (1060)
153 PF12569 NARP1: NMDA receptor- 30.6 6E+02 0.013 26.0 13.9 83 69-162 191-274 (517)
154 COG3063 PilF Tfp pilus assembl 30.5 2.8E+02 0.0061 25.5 7.8 41 109-149 29-69 (250)
155 KOG0030 Myosin essential light 30.3 49 0.0011 27.9 2.7 39 245-283 101-140 (152)
156 KOG1126 DNA-binding cell divis 30.1 73 0.0016 33.2 4.4 81 66-146 347-452 (638)
157 PRK10747 putative protoheme IX 30.1 1.3E+02 0.0029 29.1 6.3 72 74-147 265-360 (398)
158 COG5173 SEC6 Exocyst complex s 30.0 5.2E+02 0.011 26.9 10.2 155 9-174 126-308 (742)
159 PF10264 Stork_head: Winged he 29.8 2.4E+02 0.0052 21.4 6.1 37 247-283 28-67 (80)
160 PF13429 TPR_15: Tetratricopep 29.6 1E+02 0.0022 27.9 5.1 66 75-149 183-248 (280)
161 PRK15363 pathogenicity island 29.6 3.2E+02 0.007 23.4 7.7 86 69-172 36-121 (157)
162 CHL00033 ycf3 photosystem I as 28.8 3.3E+02 0.0072 22.4 11.0 68 73-147 36-104 (168)
163 PRK09782 bacteriophage N4 rece 28.7 1.2E+02 0.0026 33.7 6.1 57 112-173 41-97 (987)
164 PF12802 MarR_2: MarR family; 28.2 1.6E+02 0.0034 19.9 4.8 38 248-290 21-58 (62)
165 smart00550 Zalpha Z-DNA-bindin 28.0 1E+02 0.0023 22.1 3.9 33 248-285 22-54 (68)
166 KOG2076 RNA polymerase III tra 27.8 2.1E+02 0.0046 31.1 7.4 64 77-148 419-482 (895)
167 PF14561 TPR_20: Tetratricopep 27.4 1.9E+02 0.0041 22.0 5.4 45 116-160 23-68 (90)
168 PF09639 YjcQ: YjcQ protein; 27.3 60 0.0013 24.7 2.6 24 265-288 22-45 (88)
169 smart00668 CTLH C-terminal to 26.9 1.7E+02 0.0038 19.4 4.8 32 184-215 5-36 (58)
170 PLN03081 pentatricopeptide (PP 26.7 7.5E+02 0.016 25.8 14.6 61 72-144 158-218 (697)
171 COG4105 ComL DNA uptake lipopr 26.7 5.2E+02 0.011 24.0 10.5 37 115-151 34-70 (254)
172 PF05158 RNA_pol_Rpc34: RNA po 26.7 21 0.00047 34.2 0.0 121 151-289 115-260 (327)
173 PLN03218 maturation of RBCL 1; 26.6 9.5E+02 0.021 27.0 18.8 63 73-143 473-535 (1060)
174 COG3071 HemY Uncharacterized e 26.2 3.7E+02 0.0081 26.5 8.3 110 121-234 90-239 (400)
175 smart00419 HTH_CRP helix_turn_ 26.2 1.5E+02 0.0032 18.7 4.1 32 248-284 8-39 (48)
176 PF02082 Rrf2: Transcriptional 25.9 1.5E+02 0.0032 21.9 4.5 44 249-298 26-69 (83)
177 cd00092 HTH_CRP helix_turn_hel 25.9 1.5E+02 0.0033 20.2 4.4 34 246-284 23-56 (67)
178 PRK10153 DNA-binding transcrip 25.6 76 0.0016 32.4 3.7 53 84-147 432-485 (517)
179 PF09382 RQC: RQC domain; Int 25.6 3E+02 0.0066 20.9 7.9 20 264-283 53-72 (106)
180 KOG4521 Nuclear pore complex, 25.6 4E+02 0.0087 30.3 9.1 57 117-175 922-980 (1480)
181 TIGR00985 3a0801s04tom mitocho 25.1 1.5E+02 0.0032 25.2 4.8 28 121-148 96-124 (148)
182 KOG4642 Chaperone-dependent E3 24.8 1.9E+02 0.0042 26.9 5.7 87 44-147 23-110 (284)
183 COG2956 Predicted N-acetylgluc 24.7 6.6E+02 0.014 24.5 12.4 36 112-147 177-212 (389)
184 PF13371 TPR_9: Tetratricopept 24.6 1.7E+02 0.0037 20.2 4.5 28 122-149 2-29 (73)
185 PF08544 GHMP_kinases_C: GHMP 23.7 1.9E+02 0.0041 20.8 4.8 23 187-209 1-23 (85)
186 COG4700 Uncharacterized protei 23.6 4.7E+02 0.01 23.6 7.7 64 77-147 129-192 (251)
187 PF10557 Cullin_Nedd8: Cullin 23.1 2.9E+02 0.0062 19.7 6.3 38 247-284 21-61 (68)
188 PLN03077 Protein ECB2; Provisi 22.8 9.6E+02 0.021 25.7 15.1 65 72-148 424-488 (857)
189 PLN03098 LPA1 LOW PSII ACCUMUL 22.5 1.9E+02 0.0042 29.1 5.7 38 112-149 72-109 (453)
190 PF10607 CLTH: CTLH/CRA C-term 22.5 2.4E+02 0.0053 22.8 5.7 33 183-215 4-36 (145)
191 PF04492 Phage_rep_O: Bacterio 22.5 2.2E+02 0.0048 22.3 5.0 49 225-283 36-84 (100)
192 KOG1328 Synaptic vesicle prote 22.2 1E+03 0.022 25.9 10.9 134 116-257 386-546 (1103)
193 PF04010 DUF357: Protein of un 22.2 1.7E+02 0.0038 21.7 4.2 30 114-143 34-63 (75)
194 PF02847 MA3: MA3 domain; Int 22.1 3.7E+02 0.0079 20.6 8.9 93 184-283 6-112 (113)
195 COG4785 NlpI Lipoprotein NlpI, 21.3 96 0.0021 28.5 3.0 59 82-149 75-133 (297)
196 smart00386 HAT HAT (Half-A-TPR 21.3 1.7E+02 0.0036 16.3 4.3 19 129-147 1-19 (33)
197 PF02259 FAT: FAT domain; Int 21.0 4.1E+02 0.009 24.4 7.6 55 78-144 4-58 (352)
198 PRK15174 Vi polysaccharide exp 21.0 6.2E+02 0.013 26.5 9.5 29 118-146 321-349 (656)
199 KOG4507 Uncharacterized conser 20.9 2.5E+02 0.0054 29.5 6.2 32 116-147 677-708 (886)
200 PF01047 MarR: MarR family; I 20.6 1.7E+02 0.0036 19.7 3.6 39 248-291 17-55 (59)
201 KOG1126 DNA-binding cell divis 20.3 3.2E+02 0.0069 28.7 6.9 23 74-96 525-547 (638)
202 PF09295 ChAPs: ChAPs (Chs5p-A 20.3 4.9E+02 0.011 25.7 8.1 65 72-148 169-233 (395)
203 cd07353 harmonin_N N-terminal 20.0 3.4E+02 0.0074 20.1 5.1 55 60-118 14-74 (79)
No 1
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.8e-66 Score=492.76 Aligned_cols=293 Identities=39% Similarity=0.621 Sum_probs=279.0
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHhhhhcCC------CCchhHHHHHHHHH
Q 021452 6 IPNNCMLLQCFHSGVSELGIRLGFGSIADRELAS-NGKSPEKLKAAGSFLMKVFGVLAGK------GSKRVGALYLTCQL 78 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~lr~~la~~~D~~~~~-~~~~~~~le~~~~~i~~~f~~~~~d------~sKk~~~~~~~n~l 78 (312)
.+++.|++|.++. +|.++|+ +|+.+|....+ +...++.+|.+|++++++|+.|++| ++||+|+++++|++
T Consensus 93 ~~~~~w~~~~l~r--v~~~l~~-la~~~~~~~~~~~s~~~~~le~~s~~i~~~f~~cl~d~~~~~~~~kk~~~~~i~n~l 169 (394)
T KOG2688|consen 93 GNDENWILPNLYR--VCKDLRY-LAINADCALLSFSSLPNQLLEAASRTISRLFSSCLSDRRADLEESKKVAMLYIVNQL 169 (394)
T ss_pred ccccchHHHHHHH--HHHHHHH-HhhhhHHhhcCcccCchHHHHHHHHHHHHHHHHHhCccccccccchhhHHHHHHHHH
Confidence 5789999999999 9999999 99999999854 3445779999999999999999999 38999999999999
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHH
Q 021452 79 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILK 158 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~ 158 (312)
|+|||+++++++|+++++++++. .+..+.++.+|+|+|+||.|+++|++.||.+|+.+|.+||++||.....|+++|++
T Consensus 170 f~Iyfri~~~~L~k~l~ra~~~~-~~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af~~cp~~~~~n~~~ili 248 (394)
T KOG2688|consen 170 FQIYFRIEKLLLCKNLIRAFDQS-GSDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAFRLCPDLLLKNKRLILI 248 (394)
T ss_pred HHHHHHHhhHHHhHHHHHHhhcc-ccchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHHHhCcHHHHhhhhhHHH
Confidence 99999999999999999999986 36788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCchhhhhhchhchHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHh
Q 021452 159 YLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQ 238 (312)
Q Consensus 159 yLIpv~Ll~G~~P~~~ll~~y~l~~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~glylllerlr~lv~r~L~kkv~~~~ 238 (312)
||||++|++|++|+.+++++|.+..|.++++||+.||+..|+.++++||.+|++.|+|+++++++.+||||||||||.++
T Consensus 249 ylip~~~llg~~Pt~~lL~~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l~~l~lv~yrnL~kkv~~~~ 328 (394)
T KOG2688|consen 249 YLIPTGLLLGRIPTKELLDFYTLDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYLTLEKLPLVVYRNLFKKVIQLW 328 (394)
T ss_pred HHhHHHHHhccCcchhhHhHhhHHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHHHhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCccccHHHHHHHHhhcc-CCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEccCCCCCCCCC
Q 021452 239 KQKDPSKAHQMKLDVIVKALKWLE-MDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNG 307 (312)
Q Consensus 239 ~~~~~~~~~~I~l~~i~~al~~~~-~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~~pFP~~~~ 307 (312)
++++++|++.|..|++.++ .+.+.||+||+|||||++|+|||||||+++++|+||++|||.++.
T Consensus 329 -----~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~pfp~~v~ 393 (394)
T KOG2688|consen 329 -----GKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDPFPHLVL 393 (394)
T ss_pred -----CCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCCCCCCCC
Confidence 4789999999999999987 458999999999999999999999999999999999999999875
No 2
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-59 Score=435.85 Aligned_cols=258 Identities=33% Similarity=0.614 Sum_probs=244.0
Q ss_pred hHHHHHHHHHHHHHhhhhcCCC------CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHH
Q 021452 44 PEKLKAAGSFLMKVFGVLAGKG------SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTY 117 (312)
Q Consensus 44 ~~~le~~~~~i~~~f~~~~~d~------sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y 117 (312)
.+.+|+++|+|+|+|+.|.+|+ +||+|+|+++|++|++||++++.++|+|++++.+..+.|+.+.++++|+|+|
T Consensus 143 ~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f 222 (413)
T COG5600 143 QDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVF 222 (413)
T ss_pred HhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeeh
Confidence 6799999999999999999994 8999999999999999999999999999999999877888889999999999
Q ss_pred HHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcC-CCCCchhhhhhch-hchHHHHHHHHhCC
Q 021452 118 MYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIG-ILPKDWLLEKYNL-VEYSNIVQALRRGD 195 (312)
Q Consensus 118 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G-~~P~~~ll~~y~l-~~y~~L~~Avk~Gn 195 (312)
+||+|++|+.++++.+|+-||.+||..||.--.+|+++|+.|+||.+|+.| ..|.++++++|+. ..|.+|++|+|.||
T Consensus 223 ~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~~Ptk~~L~r~~~~s~~~~LvkavrsGn 302 (413)
T COG5600 223 HYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFPPTKDLLERFKRCSVYSPLVKAVRSGN 302 (413)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCCCCchHHHHhccccchhHHHHHHHHcCC
Confidence 999999999999999999999999999998777899999999999999975 6788899999995 47999999999999
Q ss_pred HHHHHHHHHHchHHHHHhcHHHH-HHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCC--CCHHHHHH
Q 021452 196 LRLLRHALEEHEDQFLRSGVYLV-LEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMD--MDVDEVEC 272 (312)
Q Consensus 196 l~~f~~~l~~~~~~f~~~glyll-lerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~--~~~~evE~ 272 (312)
+..|+.+++++|.+|.++|+|+. .++.+.+|||||+||+|... ++.+++|++.+..+++.++.| .+.++|||
T Consensus 303 i~~~~~~l~~ner~~~~~~l~ltl~~~~~~V~~RNL~rk~w~~~-----~~qsrlp~sil~~~~qls~~dn~~~~~~VEc 377 (413)
T COG5600 303 IEDFDLALSRNERKFAKRGLYLTLLAHYPLVCFRNLFRKIWRLH-----GKQSRLPLSILLIVLQLSAIDNFHSFKEVEC 377 (413)
T ss_pred HHHHHHHHHHhHHHHHHcchHHHHHhhccHHHHHHHHHHHHhhc-----cccccCcHHHHHHHHHccCCCcccChHHHHH
Confidence 99999999999999999999985 57899999999999999997 577999999999999999877 78999999
Q ss_pred HHHHhHHcCcceEEEeeCCeEEEEccCCCCCCCC
Q 021452 273 IVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLN 306 (312)
Q Consensus 273 ila~LI~~G~IkGyIsh~~~~lVlSK~~pFP~~~ 306 (312)
++|+||.+|++||||+|+.+++|+||++|||...
T Consensus 378 iL~tlI~~G~lrgYis~s~~~vV~sk~~pFp~~V 411 (413)
T COG5600 378 ILVTLIGLGLLRGYISHSRRTVVFSKKDPFPVSV 411 (413)
T ss_pred HHHHHHhhhhhhheecccceEEEEecCCCCCCCC
Confidence 9999999999999999999999999999999764
No 3
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-32 Score=254.66 Aligned_cols=213 Identities=22% Similarity=0.340 Sum_probs=194.5
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 68 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 68 k~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
--|+-.+.|+|++.|..-+-++.+.++++... .|+ ..+++++.+|+||.|++.+++.+|+.|.++|.+|.+..|.
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~---~pe--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSV---YPE--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhccc---Ccc--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 37888899999999999999999999987333 454 5667899999999999999999999999999999999995
Q ss_pred c-chHHHHHHHHHHHHHHhhcCCCCCchhhhhhc----hhchHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHHHHHHhh
Q 021452 148 Q-SEANIRMILKYLIPVKLSIGILPKDWLLEKYN----LVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKL 222 (312)
Q Consensus 148 ~-~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~y~----l~~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~glylllerl 222 (312)
+ +.+.++++.++.|.+++++|.+|....+.+.+ |.+|..|.+|||.||+++|+++++++.+.|..+|+|.++.||
T Consensus 280 ~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRL 359 (493)
T KOG2581|consen 280 HAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRL 359 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHH
Confidence 4 46899999999999999999999999888874 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEc
Q 021452 223 ELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLS 297 (312)
Q Consensus 223 r~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlS 297 (312)
|+.|+++.+|++.+.| +||++.+|+..|.+. +++++|.||+..|.+|.|+|.|+|++++++-+
T Consensus 360 R~NVIkTgIR~ISlsY--------SRISl~DIA~kL~l~----Seed~EyiVakAIRDGvIea~Id~~~g~m~sk 422 (493)
T KOG2581|consen 360 RHNVIKTGIRKISLSY--------SRISLQDIAKKLGLN----SEEDAEYIVAKAIRDGVIEAKIDHEDGFMQSK 422 (493)
T ss_pred HHHHHHHhhhheeeee--------eeccHHHHHHHhcCC----CchhHHHHHHHHHHhccceeeeccccCceehh
Confidence 9999999999998887 899999999999853 56689999999999999999999999975543
No 4
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-19 Score=163.01 Aligned_cols=231 Identities=17% Similarity=0.231 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHhhhhcCCC-----CchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhc-cCCCCCCCCCchhhHHHHH
Q 021452 47 LKAAGSFLMKVFGVLAGKG-----SKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIET-ARIFDFEEFPKRDKVTYMY 119 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~-----sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~-~~~p~~~~~~~~~~v~y~Y 119 (312)
...+..++.....+|.+|+ -|....+.+..+.+++|....|....+.+.. ++.. +.+|+ | --.-+.+-
T Consensus 161 ~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH----P-lImGvIRE 235 (440)
T KOG1464|consen 161 YTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH----P-LIMGVIRE 235 (440)
T ss_pred HHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc----h-HHHhHHHH
Confidence 3445677777888999873 3445568899999999999988888887764 3322 23664 3 23456789
Q ss_pred HHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhc-CCCCCchhhhh--hc----hhchHHHHHHHH
Q 021452 120 YTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSI-GILPKDWLLEK--YN----LVEYSNIVQALR 192 (312)
Q Consensus 120 Y~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~-G~~P~~~ll~~--y~----l~~y~~L~~Avk 192 (312)
++|++++.+|+|++|...|.+||+++.++++..|..+|+||+.++||+ ..+.|++..+. |. +....+++.|+.
T Consensus 236 CGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ 315 (440)
T KOG1464|consen 236 CGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQ 315 (440)
T ss_pred cCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999989999999999999997 56888888775 32 446899999999
Q ss_pred hCCHHHHHHHHHHch-----HHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCH
Q 021452 193 RGDLRLLRHALEEHE-----DQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDV 267 (312)
Q Consensus 193 ~Gnl~~f~~~l~~~~-----~~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~ 267 (312)
+.|+..|++.+..|+ +.|++..+-.++..+|.-|+..|+|. .++|.++.|...|. ++.
T Consensus 316 ~NdI~eFE~Il~~~~~~IM~DpFIReh~EdLl~niRTQVLlkLIkP------------Yt~i~Ipfis~~Ln-----v~~ 378 (440)
T KOG1464|consen 316 NNDIIEFERILKSNRSNIMDDPFIREHIEDLLRNIRTQVLLKLIKP------------YTNIGIPFISKELN-----VPE 378 (440)
T ss_pred cccHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcc------------ccccCchhhHhhcC-----CCH
Confidence 999999999999986 48999999999999999999999985 37788888999988 789
Q ss_pred HHHHHHHHHhHHcCcceEEEeeCCeEEEEccC
Q 021452 268 DEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 299 (312)
Q Consensus 268 ~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~ 299 (312)
.|||.+++++|-+..|.|.|+..++++.+.|.
T Consensus 379 ~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~ 410 (440)
T KOG1464|consen 379 ADVESLLVSCILDDTIDGRIDEVNQYLELDKS 410 (440)
T ss_pred HHHHHHHHHHHhccccccchHHhhhHhccCcc
Confidence 99999999999999999999999999888654
No 5
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.65 E-value=2.5e-15 Score=118.58 Aligned_cols=103 Identities=31% Similarity=0.451 Sum_probs=94.6
Q ss_pred chHHHHHHHHhCCHHHHHHHHHHc-hHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhc
Q 021452 183 EYSNIVQALRRGDLRLLRHALEEH-EDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWL 261 (312)
Q Consensus 183 ~y~~L~~Avk~Gnl~~f~~~l~~~-~~~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~ 261 (312)
+|.++++|+.+||+..|.+.++++ +.++.+.++...++.++..+.++.+++++..+ ++|+++.++.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y--------~~i~~~~ia~~l~-- 71 (105)
T PF01399_consen 2 PYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPY--------SSISISEIAKALQ-- 71 (105)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC---------SEEEHHHHHHHHT--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHhc--
Confidence 588999999999999999999999 88888999999999999999999999988865 8999999999998
Q ss_pred cCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEcc
Q 021452 262 EMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 298 (312)
Q Consensus 262 ~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK 298 (312)
++.+|+|+++++||.+|.|+|+|+|.+++++++|
T Consensus 72 ---~~~~~vE~~l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 72 ---LSEEEVESILIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp ---CCHHHHHHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred ---cchHHHHHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence 5789999999999999999999999999999986
No 6
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.9e-09 Score=98.23 Aligned_cols=207 Identities=16% Similarity=0.213 Sum_probs=147.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccch-HH
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE-AN 152 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~-~n 152 (312)
+--..-|.||.++|+.-++.-+.+-..+.+ --..|...|.+----.|.+|+-+.||..|+.+|.+||+-.+.-.. .+
T Consensus 170 v~llESK~y~~l~Nl~KakasLTsART~An--aiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 170 VHLLESKAYHALRNLPKAKASLTSARTTAN--AIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred ehhhhhHHHHHHhcchhHHHHHHHHHHhhc--ccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 334445667777776666654443332211 112477888999999999999999999999999999997775443 35
Q ss_pred HHHHHHHHHHHHhhcCCCCCch-hhh-----hhc---hhchHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHHH-HHHh-
Q 021452 153 IRMILKYLIPVKLSIGILPKDW-LLE-----KYN---LVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYL-VLEK- 221 (312)
Q Consensus 153 k~~IL~yLIpv~Ll~G~~P~~~-ll~-----~y~---l~~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~glyl-ller- 221 (312)
--.-|+|++.|++.++..-.-. ++. +|. +.....+++|....+++.|+.++.++..++..|-+.- -++.
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~L 327 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSL 327 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHH
Confidence 5667999999999876532221 111 242 4457889999999999999999999887666655431 1222
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEE
Q 021452 222 LELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVL 296 (312)
Q Consensus 222 lr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVl 296 (312)
-..+.=.|++|-| ...+++-++-|+..+. +|...||--++.||-+...-|.++|..+|+++
T Consensus 328 yd~lLEknl~riI---------EPyS~Vei~hIA~~IG-----l~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv 388 (411)
T KOG1463|consen 328 YDNLLEKNLCRII---------EPYSRVEISHIAEVIG-----LDVPQVEKKLSQMILDKKFYGTLDQGEGCLIV 388 (411)
T ss_pred HHHHHHHhHHHHc---------CchhhhhHHHHHHHHC-----CCcHHHHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 1222334555533 2347788888887776 58899999999999999999999999999887
No 7
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2e-07 Score=87.45 Aligned_cols=218 Identities=14% Similarity=0.204 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 68 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 68 k~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
+-++.++....-++|...|...-|+.++-..++. +-++...|.+=.-.|+--...+|=..+||+.++.|.-.=+ .|..
T Consensus 111 ~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~-ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL-~~~d 188 (380)
T KOG2908|consen 111 PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSM-LDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYL-GCSD 188 (380)
T ss_pred chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHh-cccc
Confidence 3688889999999999999999999998766652 1122233433334454445566666788887776643322 2442
Q ss_pred --cchHHHHHHHHHHHHHHhhcCC-CCCchhhhhhc-hh--------chHHHHHHHHhCCHHHHHHHHHHchH-HHHHhc
Q 021452 148 --QSEANIRMILKYLIPVKLSIGI-LPKDWLLEKYN-LV--------EYSNIVQALRRGDLRLLRHALEEHED-QFLRSG 214 (312)
Q Consensus 148 --~~~~nk~~IL~yLIpv~Ll~G~-~P~~~ll~~y~-l~--------~y~~L~~Avk~Gnl~~f~~~l~~~~~-~f~~~g 214 (312)
+.+...++-+-+..-+.=++|+ +-++..+-.+| +. --.++..|+.+||+.+|++-...+.. .-+..+
T Consensus 189 ~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~ 268 (380)
T KOG2908|consen 189 IDDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGKQPDLASN 268 (380)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhccCchHHHH
Confidence 1122233334444445555553 66665555444 11 13689999999999999998887654 233444
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEE
Q 021452 215 VYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVV 294 (312)
Q Consensus 215 lylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~l 294 (312)
--.+.+|++.+|+-++ +|.- |.....+|+++|+.+.+ ++.+|||-++.+.+..|+|+|.|+...+++
T Consensus 269 e~~L~qKI~LmaLiEi---~F~r-----pa~~R~lsf~~Ia~~tk-----ip~~eVE~LVMKAlslgLikG~Idqv~~~v 335 (380)
T KOG2908|consen 269 EDFLLQKIRLLALIEI---TFSR-----PANERTLSFKEIAEATK-----IPNKEVELLVMKALSLGLIKGSIDQVEGVV 335 (380)
T ss_pred HHHHHHHHHHHHHHHH---HhcC-----cchhccccHHHHHHHhC-----CCHHHHHHHHHHHHhccceeeeecccccEE
Confidence 5567788888886555 3332 23446799999999998 689999999999999999999999999987
Q ss_pred EEccCC
Q 021452 295 VLSKQD 300 (312)
Q Consensus 295 VlSK~~ 300 (312)
=.|-..
T Consensus 336 ~~swvq 341 (380)
T KOG2908|consen 336 YMSWVQ 341 (380)
T ss_pred EEeccc
Confidence 666544
No 8
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.95 E-value=2.8e-08 Score=93.85 Aligned_cols=179 Identities=15% Similarity=0.202 Sum_probs=128.4
Q ss_pred CCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhh-cCCC---CCchhhh--h-h-
Q 021452 108 EFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS-IGIL---PKDWLLE--K-Y- 179 (312)
Q Consensus 108 ~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll-~G~~---P~~~ll~--~-y- 179 (312)
+.+.+....|.||+|.++.-..+|+.|..+|+.++....-+-+.....-.+..+.++|+ .|++ |+-.... + +
T Consensus 176 h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K 255 (422)
T KOG2582|consen 176 HLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFK 255 (422)
T ss_pred CCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcc
Confidence 35788999999999999999999999999999998843322233333344555556666 5864 5543211 1 1
Q ss_pred chh-chHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHHHHHHh-hHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHH
Q 021452 180 NLV-EYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEK-LELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKA 257 (312)
Q Consensus 180 ~l~-~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~glylller-lr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~a 257 (312)
+.. +|.++.+++-.+.-...+..+.+|.+.|.+||..-++.. +..+--||+ +|.-... ..+++++|+..
T Consensus 256 ~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI-~rltktF--------~sLsL~dIA~~ 326 (422)
T KOG2582|consen 256 PMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNI-QRLTKTF--------LSLSLSDIASR 326 (422)
T ss_pred cCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHH-HHHHHHH--------HHhhHHHHHHH
Confidence 234 899999999999999999999999999999998654433 333333333 2211111 45899999997
Q ss_pred HhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEccCCCCC
Q 021452 258 LKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFP 303 (312)
Q Consensus 258 l~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~~pFP 303 (312)
.+++ +.+|||-.+..||.+|.|-+.|+ +.+++ ..||=|
T Consensus 327 vQLa----~~qevek~Ilqmie~~~i~a~iN---G~v~f-~~n~e~ 364 (422)
T KOG2582|consen 327 VQLA----SAQEVEKYILQMIEDGEIFASIN---GMVFF-TDNPEK 364 (422)
T ss_pred HHhc----chHHHHHHHHHHhccCceEEEec---ceEEE-ecCccc
Confidence 7764 68899999999999999999997 66555 334444
No 9
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.3e-06 Score=78.11 Aligned_cols=210 Identities=16% Similarity=0.246 Sum_probs=151.6
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 68 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 68 k~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
|.-...+--+.-|.|++++|....+.=+.+-..... --..|..-+.+----.|.+++.+.||..|+.+|.+||+-.+.
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~An--s~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLAN--SAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhh--ccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 455555666778999999999888866554443211 113466777888899999999999999999999999997774
Q ss_pred cch-HHHHHHHHHHHHHHhhcCCCCC-------chhhhhhc---hhchHHHHHHHHhCCHHHHHHHHHHchH-----HHH
Q 021452 148 QSE-ANIRMILKYLIPVKLSIGILPK-------DWLLEKYN---LVEYSNIVQALRRGDLRLLRHALEEHED-----QFL 211 (312)
Q Consensus 148 ~~~-~nk~~IL~yLIpv~Ll~G~~P~-------~~ll~~y~---l~~y~~L~~Avk~Gnl~~f~~~l~~~~~-----~f~ 211 (312)
-.. .--...|+|++..++.++..-. +..++.|. +.....+++|+.+.++..|+.++.++++ .|+
T Consensus 239 l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~i 318 (421)
T COG5159 239 LKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFI 318 (421)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHH
Confidence 332 2334469999999887754332 22233343 3346778899999999999999999765 566
Q ss_pred HhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCC
Q 021452 212 RSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 291 (312)
Q Consensus 212 ~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~ 291 (312)
+.++--+-. .+.=.|++|-+ ..-+.+.++-|+..+. .|...||--+..||-+...-|.++|.+
T Consensus 319 RsHl~~LYD---~LLe~Nl~kii---------EPfs~VeishIa~viG-----ldt~qvEgKLsqMILDKifyG~LDqg~ 381 (421)
T COG5159 319 RSHLQYLYD---VLLEKNLVKII---------EPFSVVEISHIADVIG-----LDTNQVEGKLSQMILDKIFYGTLDQGD 381 (421)
T ss_pred HHHHHHHHH---HHHHhhhhhhc---------CcceeeehhHHHHHhc-----ccHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 655422211 12224666643 1236777787877776 588899999999999999999999999
Q ss_pred eEEEE
Q 021452 292 KVVVL 296 (312)
Q Consensus 292 ~~lVl 296 (312)
+|+++
T Consensus 382 gcLiv 386 (421)
T COG5159 382 GCLIV 386 (421)
T ss_pred ceEEE
Confidence 99888
No 10
>smart00753 PAM PCI/PINT associated module.
Probab=98.24 E-value=6.5e-06 Score=63.10 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=54.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEc
Q 021452 218 VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLS 297 (312)
Q Consensus 218 llerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlS 297 (312)
+.++++..+++.+.+. ..+|+++.++..+. ++.+++|.++.+||.+|.|+|.|+|.++++++.
T Consensus 6 l~~~~~~~~l~~l~~~------------y~~i~~~~i~~~~~-----l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~ 68 (88)
T smart00753 6 LQRKIRLTNLLQLSEP------------YSSISLSDLAKLLG-----LSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFE 68 (88)
T ss_pred HHHHHHHHHHHHHhHH------------hceeeHHHHHHHhC-----cCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEEC
Confidence 4456666666666552 27899999999988 578899999999999999999999999999997
Q ss_pred cCC
Q 021452 298 KQD 300 (312)
Q Consensus 298 K~~ 300 (312)
+..
T Consensus 69 ~~~ 71 (88)
T smart00753 69 EVD 71 (88)
T ss_pred CCc
Confidence 764
No 11
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=98.24 E-value=6.5e-06 Score=63.10 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=54.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEc
Q 021452 218 VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLS 297 (312)
Q Consensus 218 llerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlS 297 (312)
+.++++..+++.+.+. ..+|+++.++..+. ++.+++|.++.+||.+|.|+|.|+|.++++++.
T Consensus 6 l~~~~~~~~l~~l~~~------------y~~i~~~~i~~~~~-----l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~ 68 (88)
T smart00088 6 LQRKIRLTNLLQLSEP------------YSSISLSDLAKLLG-----LSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFE 68 (88)
T ss_pred HHHHHHHHHHHHHhHH------------hceeeHHHHHHHhC-----cCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEEC
Confidence 4456666666666552 27899999999988 578899999999999999999999999999997
Q ss_pred cCC
Q 021452 298 KQD 300 (312)
Q Consensus 298 K~~ 300 (312)
+..
T Consensus 69 ~~~ 71 (88)
T smart00088 69 EVD 71 (88)
T ss_pred CCc
Confidence 764
No 12
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=97.65 E-value=0.022 Score=53.89 Aligned_cols=234 Identities=18% Similarity=0.208 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCC--------------CCCC
Q 021452 46 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFD--------------FEEF 109 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~--~~p~--------------~~~~ 109 (312)
-++...-.+-.+--.|..+++|- +=-+.|..+.+---.. ++-|.++++++-.. ..|+ ++.+
T Consensus 40 gl~~~l~~ii~~c~v~~k~~ekd--le~vlnsi~sLi~~~~-~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~ 116 (378)
T KOG2753|consen 40 GLEEDLLMIIEACDVLAKIPEKD--LECVLNSIVSLIKNAP-PEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGV 116 (378)
T ss_pred CHHHHHHHHHHHhHHhhcCCcch--HHHHHHHHHHHHHhCC-HHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhcc
Confidence 34444444444446666666555 4445555555555555 88888888765331 1122 2334
Q ss_pred CchhhHHHHHHHHHHhhH-h----cChHHHHHHHHHHHHhcCccchHHHHH---HHHHHHHHH----------hhcCCCC
Q 021452 110 PKRDKVTYMYYTGRLEVF-N----ENFPAADQKLSYALINCNPQSEANIRM---ILKYLIPVK----------LSIGILP 171 (312)
Q Consensus 110 ~~~~~v~y~YY~G~~~~~-~----~~~~~A~~~L~~A~~~c~~~~~~nk~~---IL~yLIpv~----------Ll~G~~P 171 (312)
.+...++|.=|...+-+- + +...-..+.+..=|+.|+.+...+|.. +.+-|.-.+ -++|.+-
T Consensus 117 d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt 196 (378)
T KOG2753|consen 117 DKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYT 196 (378)
T ss_pred CCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhc
Confidence 455568887776665432 1 122333444455555555444333221 111111111 1223322
Q ss_pred Cchh--------------------------hhhhc---hh--chHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHH--HH
Q 021452 172 KDWL--------------------------LEKYN---LV--EYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVY--LV 218 (312)
Q Consensus 172 ~~~l--------------------------l~~y~---l~--~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~gly--ll 218 (312)
..+. +.-.+ |. ...++..-+-+|-+..|-+..++|..+.-..|+- .+
T Consensus 197 ~dnas~AredA~rcV~~av~dP~~F~fD~Ll~L~pV~qLE~d~i~qLL~IF~s~~L~aYveF~~~N~~Fvqs~gl~~E~~ 276 (378)
T KOG2753|consen 197 EDNASEAREDAMRCVVEAVKDPKIFLFDHLLTLPPVKQLEGDLIHQLLKIFVSGKLDAYVEFVAANSGFVQSQGLVHEQN 276 (378)
T ss_pred ccchhHHHHHHHHHHHHHHcCCceeccchhccCchHHHhccchHHHHHHHHHhcchHHHHHHHHhChHHHHHhcccHHHH
Confidence 2221 00000 11 1356788899999999999999999988888885 37
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEcc
Q 021452 219 LEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 298 (312)
Q Consensus 219 lerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK 298 (312)
+.|+|.+.+-.|-- .+..||++.++..|+ +++||||-.+...|.-|+|.|+|+.-+|+++.|.
T Consensus 277 ~~KMRLLTlm~LA~------------es~eisy~~l~k~Lq-----I~edeVE~fVIdaI~aklV~~kidq~~~~viVs~ 339 (378)
T KOG2753|consen 277 MAKMRLLTLMSLAE------------ESNEISYDTLAKELQ-----INEDEVELFVIDAIRAKLVEGKIDQMNRTVIVSS 339 (378)
T ss_pred HHHHHHHHHHHHhc------------cCCCCCHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHHhhHHhhcceEEeeh
Confidence 88888888766633 357899999999999 7899999999999999999999999999999976
Q ss_pred C
Q 021452 299 Q 299 (312)
Q Consensus 299 ~ 299 (312)
.
T Consensus 340 ~ 340 (378)
T KOG2753|consen 340 S 340 (378)
T ss_pred h
Confidence 4
No 13
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=97.52 E-value=0.0092 Score=58.49 Aligned_cols=194 Identities=15% Similarity=0.228 Sum_probs=119.4
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 67 KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 67 Kk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
|..| ||-...|+|++--+|++..+-.++..|+-...--++..|..+ |+.+||.|=.||.-++|.+|-..|+..+..-.
T Consensus 118 ~~LG-YFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~-is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 118 KMLG-YFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACH-ISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHhh-HHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchh-eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 455556789999999999999999988864221244555555 66779999999999999999999999887433
Q ss_pred ccc-------------hHHHHHHHHHHHHHHhhc-CCCCCchhhhhhchh-chHHHHHHHHhCCHHHHHHHHHHchHHHH
Q 021452 147 PQS-------------EANIRMILKYLIPVKLSI-GILPKDWLLEKYNLV-EYSNIVQALRRGDLRLLRHALEEHEDQFL 211 (312)
Q Consensus 147 ~~~-------------~~nk~~IL~yLIpv~Ll~-G~~P~~~ll~~y~l~-~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~ 211 (312)
+.. .+.-++..-.|.-|..+. +++|.. +.. .+. .|.+=...+.+||+..|++.....-..|+
T Consensus 196 r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~-i~~--~lkeky~ek~~kmq~gd~~~f~elF~~acPKFI 272 (404)
T PF10255_consen 196 RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDES-ISS--QLKEKYGEKMEKMQRGDEEAFEELFSFACPKFI 272 (404)
T ss_pred HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHH-HHH--HHHHHHHHHHHHHHccCHHHHHHHHHhhCCCcc
Confidence 222 122233332222222222 333321 111 122 48888888999999999999986322222
Q ss_pred H--------------------hcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHH
Q 021452 212 R--------------------SGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVE 271 (312)
Q Consensus 212 ~--------------------~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE 271 (312)
. +.+-+.++-.+.--...-+|....+| +.|+++.++.-+. +|++++-
T Consensus 273 sp~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKLY--------tti~l~KLA~fl~-----vd~~~lr 339 (404)
T PF10255_consen 273 SPVSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLKLY--------TTIPLEKLASFLD-----VDEEELR 339 (404)
T ss_pred CCCCCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhh--------cCCCHHHHHHHcC-----CCHHHHH
Confidence 2 22222333333332223334444455 8899999877665 5777776
Q ss_pred HHHHHhH
Q 021452 272 CIVAILI 278 (312)
Q Consensus 272 ~ila~LI 278 (312)
..+..+=
T Consensus 340 ~~Ll~~K 346 (404)
T PF10255_consen 340 SQLLCFK 346 (404)
T ss_pred HHHHHHH
Confidence 6665543
No 14
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.18 E-value=0.014 Score=55.10 Aligned_cols=213 Identities=16% Similarity=0.257 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchH
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 151 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 151 (312)
+-+.-.+-+.|.+.+....+.-++.--+ +|--+.....-++.|.-.-+|+.=..++|-+|.+.+++-...-- -...
T Consensus 144 l~l~iriarlyLe~~d~veae~~inRaS---il~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki-~~e~ 219 (399)
T KOG1497|consen 144 LLLCIRIARLYLEDDDKVEAEAYINRAS---ILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKI-VDES 219 (399)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHH---HhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchH
Confidence 4455567788999998888887765322 33222222233677888888998889999988887764333211 1122
Q ss_pred HHHHHHHHHHHHHhhcCCCCCch-hhh------------hhchhchHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHHHH
Q 021452 152 NIRMILKYLIPVKLSIGILPKDW-LLE------------KYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLV 218 (312)
Q Consensus 152 nk~~IL~yLIpv~Ll~G~~P~~~-ll~------------~y~l~~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~glyll 218 (312)
-++.-|+.-+-|-+|.+-=|... ++. .|++.+=.=+-+-++.-++..|...+..|+.-=..+|.-.+
T Consensus 220 ~~~~aL~~a~~CtlLA~~gpqrsr~Latlfkder~~~l~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~dgssil 299 (399)
T KOG1497|consen 220 ERLEALKKALQCTLLASAGPQRSRMLATLFKDERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMDGSSIL 299 (399)
T ss_pred HHHHHHHHhHhheeecCCChHHHHHHHHHhcCcccccccchHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccCcchhh
Confidence 34455666666666654333221 111 12222101145677889999999999988875545554321
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEcc
Q 021452 219 LEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 298 (312)
Q Consensus 219 lerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK 298 (312)
.| .+.=-|++ .+...+ +.|+++.+.+-|. +|.+-+|.+.++||.+|+++|+|+..++++=+-.
T Consensus 300 -~r--a~~EhNll-s~Skly--------~nisf~~Lg~ll~-----i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~ 362 (399)
T KOG1497|consen 300 -DR--AVIEHNLL-SASKLY--------NNISFEELGALLK-----IDAEKAEKIAAQMITQERMNGSIDQIEGIIHFED 362 (399)
T ss_pred -hh--HHHHHhHH-HHHHHH--------HhccHHHHHHHhC-----CCHHHHHHHHHHHHhHHHhccchHhhcceEeecc
Confidence 11 01111221 122233 4588888887776 7899999999999999999999999999988877
Q ss_pred CCCCCCC
Q 021452 299 QDPFPKL 305 (312)
Q Consensus 299 ~~pFP~~ 305 (312)
.++.|.-
T Consensus 363 ~e~l~~w 369 (399)
T KOG1497|consen 363 REELPQW 369 (399)
T ss_pred hhhhhhh
Confidence 7777753
No 15
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.41 E-value=0.007 Score=37.12 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
.++|++|.+++..++|++|.+++..|+..+|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 47899999999999999999999999999885
No 16
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.31 Score=45.87 Aligned_cols=207 Identities=17% Similarity=0.228 Sum_probs=129.7
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 67 KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 67 Kk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
=|..+++.- +++=|-.|+..-.+..+.+++.- +..=.+. .-+=+|.=|.|.+.|...+|.+|-..|..++....
T Consensus 150 ~KiDv~l~k---iRlg~~y~d~~vV~e~lE~~~~~-iEkGgDW--eRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 150 LKIDVFLCK---IRLGLIYGDRKVVEESLEVADDI-IEKGGDW--ERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred cchhhHHHH---HHHHHhhccHHHHHHHHHHHHHH-HHhCCCH--HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 344444433 33334446666666665554431 0000011 12347999999999999999999999999988655
Q ss_pred ccchHHHHHHHHHHHHHHhhc-C-------CCCCchhhhhhc----hhchHHHHHHHHhCCHH-HHHHHHHHc-----hH
Q 021452 147 PQSEANIRMILKYLIPVKLSI-G-------ILPKDWLLEKYN----LVEYSNIVQALRRGDLR-LLRHALEEH-----ED 208 (312)
Q Consensus 147 ~~~~~nk~~IL~yLIpv~Ll~-G-------~~P~~~ll~~y~----l~~y~~L~~Avk~Gnl~-~f~~~l~~~-----~~ 208 (312)
..-.-.-..+..|-|-++++. . .+-+++++.--+ +.-...++.+.-.-|.. -|...++-+ .+
T Consensus 224 S~El~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d 303 (412)
T COG5187 224 SSELISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDD 303 (412)
T ss_pred ccccccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccch
Confidence 444445567888999999873 2 244454444322 11223444444455555 233333322 23
Q ss_pred HHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEe
Q 021452 209 QFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFA 288 (312)
Q Consensus 209 ~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIs 288 (312)
.|+-+..-+.+.-.|.-||-+|+... ..++++..++++. ++.+-++.=++.-|-+|.+...|+
T Consensus 304 ~fl~rh~d~fvREMRrrvYaQlLESY------------r~lsl~sMA~tFg-----VSV~yvdrDLg~FIp~~~LncvID 366 (412)
T COG5187 304 VFLGRHVDLFVREMRRRVYAQLLESY------------RLLSLESMAQTFG-----VSVEYVDRDLGEFIPEGRLNCVID 366 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhhHHHHHHHhC-----ccHHHHhhhHHhhCCCCceeeeee
Confidence 45555554445556666666665542 3478888888887 678889999999999999999999
Q ss_pred eCCeEEEE
Q 021452 289 HKSKVVVL 296 (312)
Q Consensus 289 h~~~~lVl 296 (312)
..++++-.
T Consensus 367 RvnGvVet 374 (412)
T COG5187 367 RVNGVVET 374 (412)
T ss_pred cccceEec
Confidence 99997655
No 17
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=1.4 Score=43.09 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc-chHH
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ-SEAN 152 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~-~~~n 152 (312)
+.-.|-+++=..|..+-|..++-.+.. ..+..+.+++.|.|--=.=|+.+.++||..|.-.=-.--...-+. ...+
T Consensus 133 lTk~L~~ike~~Gdi~~Aa~il~el~V---ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 133 LTKMLAKIKEEQGDIAEAADILCELQV---ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcch---hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 556677778888888888887765543 345667789999998888888999999998864321111111111 1111
Q ss_pred HHHH-H-----------HHHHHHHhhcCC--CC-----------------------Cc-----hhhhhh-------chhc
Q 021452 153 IRMI-L-----------KYLIPVKLSIGI--LP-----------------------KD-----WLLEKY-------NLVE 183 (312)
Q Consensus 153 k~~I-L-----------~yLIpv~Ll~G~--~P-----------------------~~-----~ll~~y-------~l~~ 183 (312)
.++. . .||-.|+-..+. .| |. +++.+- +++.
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~dKkL~e~p~ 289 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISNDKKLSELPD 289 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhcccccccCcc
Confidence 1100 0 122222211110 00 00 001110 1335
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHHH-------HHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHH
Q 021452 184 YSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYL-------VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVK 256 (312)
Q Consensus 184 y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~glyl-------llerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~ 256 (312)
|..+++.+-+|-+-.|...-+.+++.+...+.+. -.+-++.-++-.=+|-+...| ++|++..+..
T Consensus 290 ~k~lLklfv~~EL~rw~s~~~~yg~~l~~~~~~~~~~~gek~~~dL~~RIiEHNiRiiA~yY--------SrIt~~rl~e 361 (439)
T KOG1498|consen 290 YKELLKLFVTMELIRWVSLVESYGDELRTNDFFDGGEEGEKRWSDLKLRIIEHNIRIIAKYY--------SRITLKRLAE 361 (439)
T ss_pred HHHHHHHHHhcceeeehhHhhhhHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHH--------hhccHHHHHH
Confidence 8999999999999999977777888777763321 223344444444455555555 8999999988
Q ss_pred HHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEcc
Q 021452 257 ALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 298 (312)
Q Consensus 257 al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK 298 (312)
-+. .+.+|+|..+.+|+..|.+.++|+...+.+-+-+
T Consensus 362 LLd-----l~~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k 398 (439)
T KOG1498|consen 362 LLD-----LPVEEMEKFLSDLVVTGTIYAKIDRPSGIINFQK 398 (439)
T ss_pred HhC-----CCHHHHHHHHHHHHhccceEEEecCCCceEEEEe
Confidence 877 5899999999999999999999999999888844
No 18
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.55 Score=44.78 Aligned_cols=208 Identities=14% Similarity=0.185 Sum_probs=130.8
Q ss_pred CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 66 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 66 sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
+-|..++|.. +++=|=-++.++....+...++- +..=.+..+ +=+|+=|.|.+.|.-.+|.+|-..|..++...
T Consensus 138 g~kiDVvf~~---iRlglfy~D~~lV~~~iekak~l-iE~GgDWeR--rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 138 GHKIDVVFYK---IRLGLFYLDHDLVTESIEKAKSL-IEEGGDWER--RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred ccchhhHHHH---HHHHHhhccHHHHHHHHHHHHHH-HHhCCChhh--hhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 3444444433 34444445666666555433321 000011112 22688999999999999999999999998865
Q ss_pred CccchHHHHHHHHHHHHHHhhcCC--------CCCchhhhhh-chhchHHHHHHHHhCCHHHHHHHHHHchH------HH
Q 021452 146 NPQSEANIRMILKYLIPVKLSIGI--------LPKDWLLEKY-NLVEYSNIVQALRRGDLRLLRHALEEHED------QF 210 (312)
Q Consensus 146 ~~~~~~nk~~IL~yLIpv~Ll~G~--------~P~~~ll~~y-~l~~y~~L~~Avk~Gnl~~f~~~l~~~~~------~f 210 (312)
...-.---..+..|-+-++++.=. +-.+++++.- .+..-.++..++=.-|...|-..+...+. +|
T Consensus 212 tS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~~~Evl~vl~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~ 291 (393)
T KOG0687|consen 212 TSYELMSYETFVRYTVITGLIALERVDLKTKVIKCPEVLEVLHKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRY 291 (393)
T ss_pred cceecccHHHHHHHHHHHhhheeccchHHhhhcCcHHHHHHhhcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchh
Confidence 433222334566788888887411 2223333321 13334556666677777777777744322 23
Q ss_pred HHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeC
Q 021452 211 LRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 290 (312)
Q Consensus 211 ~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~ 290 (312)
+-...-.-+.-.|..+|-+++... ..++++..++++. ++.+-++.=|+..|..|.+..+|+..
T Consensus 292 l~~h~~yyvREMR~rvY~QlLESY------------rsl~l~~MA~aFg-----VSVefiDreL~rFI~~grL~ckIDrV 354 (393)
T KOG0687|consen 292 LGPHYRYYVREMRRRVYAQLLESY------------RSLTLESMAKAFG-----VSVEFIDRELGRFIAAGRLHCKIDRV 354 (393)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhC-----chHHHHHhHHHHhhccCceeeeeecc
Confidence 322222234457777777777643 3478899999988 68899999999999999999999999
Q ss_pred CeEEEE
Q 021452 291 SKVVVL 296 (312)
Q Consensus 291 ~~~lVl 296 (312)
+++|-.
T Consensus 355 nGVVEt 360 (393)
T KOG0687|consen 355 NGVVET 360 (393)
T ss_pred cceeec
Confidence 998766
No 19
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.76 Score=47.71 Aligned_cols=176 Identities=13% Similarity=0.188 Sum_probs=116.6
Q ss_pred chhhHHHH---HHHHHHhhHhcChHHHHHHHHHHHHhcC---------------ccc----------------hHHHHHH
Q 021452 111 KRDKVTYM---YYTGRLEVFNENFPAADQKLSYALINCN---------------PQS----------------EANIRMI 156 (312)
Q Consensus 111 ~~~~v~y~---YY~G~~~~~~~~~~~A~~~L~~A~~~c~---------------~~~----------------~~nk~~I 156 (312)
.+-|+-|+ --+|.++|-+|-..+|+.+|+.-...-+ +.+ +-|.+++
T Consensus 523 ~stQIL~NRtmvQLGLCAFR~Gmi~EaH~~L~dl~st~r~kELLgQgv~~~~~he~t~eQe~~eR~rQlPyHmHINLELl 602 (843)
T KOG1076|consen 523 ISTQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELL 602 (843)
T ss_pred hhHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcchHHHHHhhhhhhhhhhccChhhHHHHHhhcCchhhhccHHHH
Confidence 34444443 3489999999999999999987765221 111 0122222
Q ss_pred -HHHHHHHHhhcCCCCCc--------------hh---hhhhc----------hhch-HHHHHHHHhCCHHHHHHHHHHch
Q 021452 157 -LKYLIPVKLSIGILPKD--------------WL---LEKYN----------LVEY-SNIVQALRRGDLRLLRHALEEHE 207 (312)
Q Consensus 157 -L~yLIpv~Ll~G~~P~~--------------~l---l~~y~----------l~~y-~~L~~Avk~Gnl~~f~~~l~~~~ 207 (312)
-.||+ |+||+ .+|.- .+ |+.+. ..+| ..-.+|+..||..+-.+.+-++.
T Consensus 603 EcVyLt-caMLl-EIP~MAA~~~d~Rrr~iSk~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~ 680 (843)
T KOG1076|consen 603 ECVYLT-CAMLL-EIPYMAAHESDARRRMISKSFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNI 680 (843)
T ss_pred HHHHHH-HHHHH-hhhHHhhhhhhhhcccccHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Confidence 25665 45554 23421 11 22221 1123 33468999999999888665544
Q ss_pred HHHHH----hcHH-HHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCc
Q 021452 208 DQFLR----SGVY-LVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNL 282 (312)
Q Consensus 208 ~~f~~----~gly-lllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~ 282 (312)
..|-- +.+. .+.+|++.--+|+.+=.....| ..++++.++..+. ++...|..|+.+||.+--
T Consensus 681 KvW~Lfpn~d~V~~Ml~~rIqEEsLRTYLftYss~Y--------~SvSl~~LA~mFd-----Lp~~~VhsIiSkmiineE 747 (843)
T KOG1076|consen 681 KVWDLFPNADTVLDMLTERIQEESLRTYLFTYSSVY--------DSVSLAKLADMFD-----LPEPKVHSIISKMIINEE 747 (843)
T ss_pred hHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------hhccHHHHHHHhC-----CCchhHHHHHHHHHHHHH
Confidence 43322 2332 3668888888887766555555 6789999988877 578889999999999999
Q ss_pred ceEEEeeCCeEEEEccCCC
Q 021452 283 VKGYFAHKSKVVVLSKQDP 301 (312)
Q Consensus 283 IkGyIsh~~~~lVlSK~~p 301 (312)
|-+.++...+|+|+-+..|
T Consensus 748 l~AslDqpt~~iv~hrvE~ 766 (843)
T KOG1076|consen 748 LHASLDQPTQCIVMHRVEP 766 (843)
T ss_pred hhhccCCCcceEEEeeccc
Confidence 9999999999999977654
No 20
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.37 E-value=0.06 Score=38.81 Aligned_cols=63 Identities=16% Similarity=0.042 Sum_probs=50.6
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
|..+|++.++++.+...+..+-.. .|. .+..+++.|.+++..++|.+|.+.|+.++..+|.+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~-~p~--------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL-DPD--------DPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh-Ccc--------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 357899999999998887644331 132 346778899999999999999999999999999654
No 21
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.29 E-value=0.13 Score=36.34 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=50.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
+-..|++.|+++.|...++.+-.. .| +-...+|..|.++...+++.+|...|..+....|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~-~P--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ-DP--------DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC-ST--------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 346799999999999999877653 12 246789999999999999999999999999988753
No 22
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.09 E-value=0.16 Score=49.63 Aligned_cols=161 Identities=13% Similarity=0.150 Sum_probs=105.6
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHH-HHhcCccchHHHHHHHHHHHHHHhhcCCCCCchhhhh------h----chh-ch
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYA-LINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEK------Y----NLV-EY 184 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A-~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~------y----~l~-~y 184 (312)
-.-+.|...+..++|..|-.+|-.| +.+|.-...-+..-|-.|--.|.|-. +-..++... | ++. ..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAt--fdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALAT--FDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhcc--CCHHHHHHHHHcchhhhhHHhcChHH
Confidence 3567899999888998887776555 55777333333333444444443321 222233211 1 123 25
Q ss_pred HHHHHHHHhCCHHHHHHHHHHch-----HHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHh
Q 021452 185 SNIVQALRRGDLRLLRHALEEHE-----DQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALK 259 (312)
Q Consensus 185 ~~L~~Avk~Gnl~~f~~~l~~~~-----~~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~ 259 (312)
.+++..+-++-...--+.+++.+ +.++..++-.|.+++|.-++...+. ....++++.++.|++
T Consensus 309 r~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~------------py~s~~m~~mA~af~ 376 (466)
T KOG0686|consen 309 REILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLS------------PYSSADMSKMAEAFN 376 (466)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcC------------ccccchHHHHHHHhc
Confidence 66777777776666666666644 4677777777777777755444333 236789999999998
Q ss_pred hccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEE
Q 021452 260 WLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVL 296 (312)
Q Consensus 260 ~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVl 296 (312)
.+..++|.=|-.||.+|.|+|.|+..++++-.
T Consensus 377 -----~sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~ 408 (466)
T KOG0686|consen 377 -----TSVAILESELLELILEGKISGRIDSHNKILYA 408 (466)
T ss_pred -----ccHHHHHHHHHHHHHccchheeeccccceeee
Confidence 57889999999999999999999987776443
No 23
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.42 E-value=0.093 Score=32.18 Aligned_cols=31 Identities=16% Similarity=-0.014 Sum_probs=27.5
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
-+|..|..++..++|++|.++++.|++..|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4688999999999999999999999998874
No 24
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=1.6 Score=41.76 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=72.2
Q ss_pred HHHHHHH-HhCCHHHHHHHHHHchH-----HHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 021452 185 SNIVQAL-RRGDLRLLRHALEEHED-----QFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKAL 258 (312)
Q Consensus 185 ~~L~~Av-k~Gnl~~f~~~l~~~~~-----~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al 258 (312)
.+++.|+ -.-|..+=...+.+-|. +|+-.-+-..+|..|.+++-..+| ++ ..|+++.++..|
T Consensus 292 teFl~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ARl~ifEtfCR----IH--------qcIti~mLA~kL 359 (432)
T KOG2758|consen 292 TEFLECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLENARLLIFETFCR----IH--------QCITIDMLADKL 359 (432)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH----HH--------HheeHHHHHHHh
Confidence 4455554 44566665666665444 444333334668888888866655 33 469999999999
Q ss_pred hhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEccC
Q 021452 259 KWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 299 (312)
Q Consensus 259 ~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~ 299 (312)
+ ++++|+|++++|||..-.|.++|+.+.+.||..-+
T Consensus 360 n-----m~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~ 395 (432)
T KOG2758|consen 360 N-----MDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHP 395 (432)
T ss_pred c-----CCHHHHHHHHHHHHHHhhhhhhhccccCceeecCC
Confidence 8 68999999999999999999999999999888554
No 25
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=8.1 Score=36.78 Aligned_cols=210 Identities=14% Similarity=0.141 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHH
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEAN 152 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~n 152 (312)
++.-.|-++|-..|+.+.+..++=++.. ..+..+..++.|.|-.=.=++.+.++||..|...-..-.+..-+.....
T Consensus 132 riT~~L~~ikee~Gdi~sA~Dilcn~pV---ETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~ 208 (439)
T COG5071 132 RLTQLLSQIKEEQGDIKSAQDILCNEPV---ETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQ 208 (439)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHhcCch---hhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHH
Confidence 4566778888888998888888765442 3456677899999988888999999999999876665555444333222
Q ss_pred HHHHHHHHHHHHhhcCCCCCchh-----------------------hh--hh-c-hhchHH----HHHHHHhCCHHHHHH
Q 021452 153 IRMILKYLIPVKLSIGILPKDWL-----------------------LE--KY-N-LVEYSN----IVQALRRGDLRLLRH 201 (312)
Q Consensus 153 k~~IL~yLIpv~Ll~G~~P~~~l-----------------------l~--~y-~-l~~y~~----L~~Avk~Gnl~~f~~ 201 (312)
-.++--|=+.|++-+|+---++. +. -| . |.+|.+ |+. =++||...-..
T Consensus 209 slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS~~v~F~iLtpy~neq~dlvh-Ki~~d~kl~sl 287 (439)
T COG5071 209 SLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLSNVVCFALLTPYDNEQADLLH-KINADHKLNSL 287 (439)
T ss_pred HHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhhcceeeEEecccccHHHHHHH-Hhhhhhhhccc
Confidence 22333333444554443111111 11 00 0 224422 222 12333322111
Q ss_pred HHHH--------------------chHHHHHhcHHH-------HHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHH
Q 021452 202 ALEE--------------------HEDQFLRSGVYL-------VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVI 254 (312)
Q Consensus 202 ~l~~--------------------~~~~f~~~glyl-------llerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i 254 (312)
-..+ +++.+..+..-. -.+-++.-|+-.=+|-+...| ++|+...+
T Consensus 288 ~~~~~lVk~f~vNelmrwp~V~~~y~~~l~~~~faF~~e~~~~~w~DL~krviEHN~RvI~~yY--------SrI~~~rl 359 (439)
T COG5071 288 PLLQQLVKCFIVNELMRWPKVAEIYGSALRSNVFAFNDEKGEKRWSDLRKRVIEHNIRVIANYY--------SRIHCSRL 359 (439)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHhHHHHHhhhhhhccchhhhhHHHHHHHHHHhhHhHHHHHh--------hhhhHHHH
Confidence 1110 111111110000 001122222222223222222 66777666
Q ss_pred HHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEccC
Q 021452 255 VKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 299 (312)
Q Consensus 255 ~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~ 299 (312)
-.-++ .+++|+|..+.-|+.+|.+.++|....+.+-+-|.
T Consensus 360 ~~lld-----~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~ 399 (439)
T COG5071 360 GVLLD-----MSPSETEQFISDLVNKGHFYAKINRPAQIISFEKS 399 (439)
T ss_pred HHHHc-----CCHHHHHHHHHHHHhcCcEEEEecCccceEEeecc
Confidence 66555 68999999999999999999999999999888664
No 26
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.70 E-value=0.42 Score=35.60 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=42.8
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHH
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYA 141 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A 141 (312)
+-.+||+.++++.|-.+++..+.. ...+...|..|+.++..++|++|.++|..|
T Consensus 31 la~~~~~~~~y~~A~~~~~~~~~~----------~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQKLKLD----------PSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHCHTHH----------HCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 788999999999999998762211 112567777799999999999999999876
No 27
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=92.63 E-value=0.58 Score=43.96 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCC------------------------------CCCCCchhhHHH
Q 021452 68 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFD------------------------------FEEFPKRDKVTY 117 (312)
Q Consensus 68 k~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~------------------------------~~~~~~~~~v~y 117 (312)
+.+-+....+...+|.++|++++++..++++...+ .+ .+.++. .+.-
T Consensus 127 ~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~--t~~~ 203 (290)
T PF04733_consen 127 KGGSLELLALAVQILLKMNRPDLAEKELKNMQQID-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS--TPKL 203 (290)
T ss_dssp TTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHH
T ss_pred ccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC--CHHH
Confidence 34667888899999999999999999999887421 00 000111 0111
Q ss_pred HHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCCc--hhhhhhc-hhchHHHHHHHHhC
Q 021452 118 MYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKD--WLLEKYN-LVEYSNIVQALRRG 194 (312)
Q Consensus 118 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~--~ll~~y~-l~~y~~L~~Avk~G 194 (312)
..-.+..++..++|++|++.|.+|+..-|.+ .-.|.-+|.+..++|+=+.. ..+++-. ..+-.+++..+..-
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~-----~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPND-----PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH-----HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 2225566778888888888888887643322 22455677777777765331 2222211 12334555555433
Q ss_pred CHHHHHHHHHH
Q 021452 195 DLRLLRHALEE 205 (312)
Q Consensus 195 nl~~f~~~l~~ 205 (312)
+ ..||+++.+
T Consensus 279 ~-~~FD~~~~k 288 (290)
T PF04733_consen 279 E-AEFDRAVAK 288 (290)
T ss_dssp H-HHHHHHHHC
T ss_pred H-HHHHHHHHh
Confidence 3 256665554
No 28
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.23 E-value=0.23 Score=29.82 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=28.3
Q ss_pred HHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 118 MYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 118 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
+|..|+++...+++++|.+.|+..+...|.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 5889999999999999999999999998863
No 29
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.21 E-value=0.79 Score=33.36 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 71 ALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 71 ~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
+....+.+-.+|+++|+++.+...++ +++-. ..++ ...+.+...+-+|.++-..+++++|.++++.|++-+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD----DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45567888999999999999998775 34321 1221 223568888999999999999999999999999853
No 30
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.65 E-value=0.4 Score=29.12 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
..+|-.|.++...+++++|.++|..|++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3568899999999999999999999999776
No 31
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.60 E-value=3 Score=38.61 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHh
Q 021452 46 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
..+.|.....++-.....++ +....--+...+-.+|.++++++.+-.++..+-..... +...+-..-.|+.-.+.++
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~--~~l~~~~~~~~~l~a~l~~ 206 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE--NNLLKYSAKEYFLKAILCH 206 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC--HCTTGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc--ccccchhHHHHHHHHHHHH
Confidence 34445555555544444443 44555567778889999999999999988765432110 0111222234666788899
Q ss_pred hHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCCchhhhhhchhchHHHHHHHHhCCHHHHHHHHHH
Q 021452 126 VFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEE 205 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~y~l~~y~~L~~Avk~Gnl~~f~~~l~~ 205 (312)
+..+|+..|.+.|+.....+|.=. --+.+ .--..|++|++.||...|.+++..
T Consensus 207 L~~~D~v~A~~~~~~~~~~~~~F~-------------------------~s~E~--~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 207 LAMGDYVAARKALERYCSQDPSFA-------------------------SSREY--KFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp HHTT-HHHHHHHHHHHGTTSTTST-------------------------TSHHH--HHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCC-------------------------CcHHH--HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998888777665211 10111 012579999999999999999998
Q ss_pred chH
Q 021452 206 HED 208 (312)
Q Consensus 206 ~~~ 208 (312)
+..
T Consensus 260 ~d~ 262 (282)
T PF14938_consen 260 YDS 262 (282)
T ss_dssp HTT
T ss_pred Hcc
Confidence 754
No 32
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=91.35 E-value=1.7 Score=34.83 Aligned_cols=66 Identities=12% Similarity=-0.038 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccch
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 150 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~ 150 (312)
..+-.+|++.++++.+...+...-.. .|. -...+|+.|.++...+++++|...|..|++.+|.+..
T Consensus 55 ~~la~~~~~~~~~~~A~~~~~~~~~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 55 LGLAACCQMLKEYEEAIDAYALAAAL-DPD--------DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34567888899999999877654331 121 2466799999999999999999999999999886653
No 33
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.00 E-value=2.5 Score=29.45 Aligned_cols=63 Identities=17% Similarity=0.027 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
...+..+|...++++.+...+...-.. .|. .. ...+..|.++...+++.+|...+..+++.+|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALEL-DPD------NA--KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCc------ch--hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 345666778888888888877654321 121 11 5678889999999999999999999988776
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.56 E-value=1.6 Score=30.72 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhc-ChHHHHHHHHHHHHhcC
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE-NFPAADQKLSYALINCN 146 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~-~~~~A~~~L~~A~~~c~ 146 (312)
...+=.+|++.++++.+-..++ +++-. | .....+|..|.+++..+ +|.+|.++++.|++.-|
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p--------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELD--P--------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHS--T--------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--C--------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3445677888999998887765 44431 2 12457788999999998 79999999999987543
No 35
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=90.15 E-value=3.8 Score=28.47 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=48.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+-.+|++.|+++.+...++..-.. .|. .. ...+..|.++...+++++|.+.++.+....+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~-~~~------~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL-DPD------NA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc-CCc------cH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 4556788899999998887654321 121 11 5678899999999999999999999999777544
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=89.35 E-value=3.1 Score=34.51 Aligned_cols=74 Identities=9% Similarity=-0.078 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc--hHHH
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS--EANI 153 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~--~~nk 153 (312)
..+-.++.+.|+++-+-..+...-.. .|. -...+|.+|..+...|++++|.+.|..|+..+|.+. ..++
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~--------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALML-DAS--------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc-CCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45666788899999999888644331 122 136789999999999999999999999999999764 3455
Q ss_pred HHHHH
Q 021452 154 RMILK 158 (312)
Q Consensus 154 ~~IL~ 158 (312)
..++.
T Consensus 133 ~~~~~ 137 (144)
T PRK15359 133 QNAQI 137 (144)
T ss_pred HHHHH
Confidence 55543
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=89.33 E-value=1 Score=31.81 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+-.|..++..++|++|..+|+.|++.+|.+.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 4568899999999999999999999999988654
No 38
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=89.05 E-value=0.79 Score=33.35 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=30.7
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEe
Q 021452 246 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFA 288 (312)
Q Consensus 246 ~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIs 288 (312)
..++++++++.-|. .+.+.||.+|.-||.+|+|+-.-.
T Consensus 12 ~~~~S~~eLa~~~~-----~s~~~ve~mL~~l~~kG~I~~~~~ 49 (69)
T PF09012_consen 12 RGRVSLAELAREFG-----ISPEAVEAMLEQLIRKGYIRKVDM 49 (69)
T ss_dssp S-SEEHHHHHHHTT-------HHHHHHHHHHHHCCTSCEEEEE
T ss_pred cCCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCcEEEecC
Confidence 36799999999888 689999999999999999984433
No 39
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.89 E-value=0.98 Score=29.53 Aligned_cols=32 Identities=16% Similarity=-0.105 Sum_probs=28.9
Q ss_pred HHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 118 MYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 118 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+-.|+.+.-.|++++|...|+.+++.+|.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 46679999999999999999999999999765
No 40
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=86.99 E-value=5.5 Score=32.80 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=44.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHH
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 142 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 142 (312)
.+-++|...++++.+...+..+... ...-.+....|.+++-.|++++|.+.++.|+
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~----------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE----------AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc----------chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4678899999999999888654321 1123467789999999999999999998874
No 41
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=86.47 E-value=4.6 Score=30.91 Aligned_cols=68 Identities=10% Similarity=-0.040 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+-.+|++.++++.+...++.+-.. .|... ......|..|.++.-.+++.+|..++.+++...|.+.
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKK-YPKSP-----KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHH-CCCCC-----cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 33677899999999999998866542 23211 1235578999999999999999999999999887654
No 42
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=85.55 E-value=2.9 Score=44.28 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=61.2
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEcc
Q 021452 219 LEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 298 (312)
Q Consensus 219 lerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK 298 (312)
+..|+.+.++.||+.|..+| ..|+++.+..-..+ .+.-++|-+++.....|.+.-.|+|...+|.+++
T Consensus 426 I~sLq~v~~~RllqQvSqiY--------~sIs~~~l~~La~F----~~~~~lEk~~v~a~k~~~v~iriDH~~~~v~Fgs 493 (988)
T KOG2072|consen 426 IPSLQDVIILRLLQQVSQIY--------ESISFERLYKLAPF----FSAFELEKLLVEAAKHNDVSIRIDHESNSVSFGS 493 (988)
T ss_pred chhHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHhh----cCHHHHHHHHHHHHhccceeEEeccccceeeecc
Confidence 35588899999999999998 67888888765554 5888999999999999999999999999999986
Q ss_pred CCCCC
Q 021452 299 QDPFP 303 (312)
Q Consensus 299 ~~pFP 303 (312)
|.|-
T Consensus 494 -Dl~~ 497 (988)
T KOG2072|consen 494 -DLFL 497 (988)
T ss_pred -cccc
Confidence 5443
No 43
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.35 E-value=1.6 Score=24.28 Aligned_cols=30 Identities=17% Similarity=0.032 Sum_probs=26.2
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
..+-.|..++..+++++|..++..|++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 457789999999999999999999987644
No 44
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.22 E-value=14 Score=32.00 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc---c
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP---Q 148 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~---~ 148 (312)
+-+.-.++++.+..+++..+.+.+...++. +.. .-+..-+-+..=|.|..++..++|.+|-+.|-.+...... .
T Consensus 73 id~~l~~irv~i~~~d~~~v~~~i~ka~~~--~~~-~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~ 149 (177)
T PF10602_consen 73 IDMCLNVIRVAIFFGDWSHVEKYIEKAESL--IEK-GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYT 149 (177)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--Hhc-cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchh
Confidence 445556789999999999999988766653 211 1123445568899999999999999999998888764432 2
Q ss_pred chHHHHHHHHHHHHHHhhc
Q 021452 149 SEANIRMILKYLIPVKLSI 167 (312)
Q Consensus 149 ~~~nk~~IL~yLIpv~Ll~ 167 (312)
..---.-|-.|-+.++|..
T Consensus 150 el~s~~d~a~Y~~l~aLat 168 (177)
T PF10602_consen 150 ELISYNDFAIYGGLCALAT 168 (177)
T ss_pred hhcCHHHHHHHHHHHHHHh
Confidence 2222345566777777663
No 45
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.87 E-value=22 Score=35.99 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=86.6
Q ss_pred CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 66 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 66 sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
++..-..++-..+--+|.+.++.+-.+.++.+|.... ..+..+......++|-.|.+.+.++++.+|...+.+-++..
T Consensus 398 ~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~n--t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 398 ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLN--TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCC--CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4555566666677789999999888888888777421 12222334456688999999999999999999999999976
Q ss_pred CccchHHHHHHHHHHHHHHhh---cC--------CCCCchhhhh-hc-------hhchHHHHHHHHhCCHHHHHHHHHH
Q 021452 146 NPQSEANIRMILKYLIPVKLS---IG--------ILPKDWLLEK-YN-------LVEYSNIVQALRRGDLRLLRHALEE 205 (312)
Q Consensus 146 ~~~~~~nk~~IL~yLIpv~Ll---~G--------~~P~~~ll~~-y~-------l~~y~~L~~Avk~Gnl~~f~~~l~~ 205 (312)
. +-.+-|..--+|+..+.+ .| -.|..++-.+ |+ ...|.+|-+|....-...-+++..+
T Consensus 476 n--aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 476 N--AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred c--hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3 334555554455544432 22 2455444443 22 3457777777654224344444443
No 46
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=82.35 E-value=2.4 Score=26.48 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=22.7
Q ss_pred HHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 119 YYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 119 YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
..+|.+|...++|++|.+.++.|+..+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999977543
No 47
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=80.31 E-value=4.8 Score=29.08 Aligned_cols=33 Identities=15% Similarity=-0.095 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 113 DKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 113 ~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
+..+.+...|.++...++|++|.++++.|+..+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 35 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999973
No 48
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.77 E-value=20 Score=33.55 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCC-CC--------CCCCCchhhHH--HHHH---------------
Q 021452 67 KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARI-FD--------FEEFPKRDKVT--YMYY--------------- 120 (312)
Q Consensus 67 Kk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~-p~--------~~~~~~~~~v~--y~YY--------------- 120 (312)
++.+-+-.+.+-..|..|+++.+++++-++.+..-+- .. ...+...+.++ |++|
T Consensus 132 ~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~lln 211 (299)
T KOG3081|consen 132 HLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLN 211 (299)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHc
Confidence 4577788889999999999999999999998875210 00 01122333333 5555
Q ss_pred -HHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCC
Q 021452 121 -TGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILP 171 (312)
Q Consensus 121 -~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P 171 (312)
.+.+++..++|++|+..|..|+...+... -.|.-+|.+.++.|+=|
T Consensus 212 G~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-----etL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 212 GQAVCHLQLGRYEEAESLLEEALDKDAKDP-----ETLANLIVLALHLGKDA 258 (299)
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHhccCCCH-----HHHHHHHHHHHHhCCCh
Confidence 45568999999999999999999877542 34666889999999643
No 49
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=77.55 E-value=17 Score=27.61 Aligned_cols=66 Identities=8% Similarity=0.016 Sum_probs=48.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.+-..+++.|+++-+...+..+... .|. .+ ....-+|..|..++-.++|.+|...+..+...+|..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKK-YPK---ST--YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCC---cc--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 3456678889999888887765432 232 11 112446889999999999999999999999987754
No 50
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=77.39 E-value=4.4 Score=28.27 Aligned_cols=57 Identities=9% Similarity=-0.005 Sum_probs=42.7
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 83 FKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 83 fkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
++.|+++-+-.+++.+-.. .| .. ....+.+|.+++-.|++++|.+.|..+....|.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p------~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NP------DN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TT------TS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHH-CC------CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 5677888888887755432 23 22 3456789999999999999999999999988863
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=77.01 E-value=37 Score=28.63 Aligned_cols=74 Identities=14% Similarity=-0.002 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 68 RVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 68 k~~~~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
+.........+...|.+.|+++.+...++. ++.. |. ..+....++-.|.++...++|++|.+.+..|+...|
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE--ED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 344444556677889999999999887764 3321 21 112356788999999999999999999999999766
Q ss_pred cc
Q 021452 147 PQ 148 (312)
Q Consensus 147 ~~ 148 (312)
..
T Consensus 104 ~~ 105 (172)
T PRK02603 104 KQ 105 (172)
T ss_pred cc
Confidence 43
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.20 E-value=55 Score=30.05 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=51.4
Q ss_pred HHHHHHHhhhhcCCC-----CchhHHHHHHHHHHHHHHhcCChhhHH-HHHHHhhccCCCCCCCCCchhhHHHHHHHHHH
Q 021452 51 GSFLMKVFGVLAGKG-----SKRVGALYLTCQLFKIYFKLGTVHLCR-SVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 51 ~~~i~~~f~~~~~d~-----sKk~~~~~~~n~l~k~Yfkl~~~~l~~-~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
+.++.=++..|.+|. +++.-+--.--.|---|++-|++..++ |+-|+++.. |+ +..++.+.=+||
T Consensus 9 ~lv~~La~~~cvt~~~~~~~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps---~~~a~~~~A~~Y---- 79 (250)
T COG3063 9 SLVFSLALGACVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD--PS---YYLAHLVRAHYY---- 79 (250)
T ss_pred HHHHHHhhhcccCCCCccccccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc---cHHHHHHHHHHH----
Confidence 344444555777773 344555566667778899999999998 566778763 32 345665554444
Q ss_pred hhHhcChHHHHHHHHHHHHhcCc
Q 021452 125 EVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
...|+-+.|.+.+..|+..-|.
T Consensus 80 -q~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 80 -QKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred -HHcCChhhHHHHHHHHHhcCCC
Confidence 2334444444444444444443
No 53
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=74.73 E-value=26 Score=33.15 Aligned_cols=71 Identities=17% Similarity=0.059 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+.+..+|.+.++++.+...++.+... .|. .+......|++-.|..+...+++++|.+.|.++++..|..
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKL-GGD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHh-cCC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 3445666777778877777776655432 121 1122345566668888899999999999999999876643
No 54
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.20 E-value=12 Score=34.54 Aligned_cols=63 Identities=10% Similarity=0.002 Sum_probs=46.0
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 81 IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 81 ~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+++-++++-+-..++.+-.. .|.-. ..-.-+|++|..|+..++|.+|...|...+...|.+.
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~-yP~s~-----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKK-YPDST-----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHH-CcCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 345558888887777665542 34311 1123469999999999999999999999999888654
No 55
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.72 E-value=4.4 Score=25.18 Aligned_cols=29 Identities=14% Similarity=-0.052 Sum_probs=23.9
Q ss_pred HHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 118 MYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 118 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
..-+|.++...++|++|...+.+|+..+-
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 45689999999999999999999998654
No 56
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=73.69 E-value=25 Score=30.49 Aligned_cols=139 Identities=13% Similarity=0.182 Sum_probs=75.5
Q ss_pred CchhhHHHHHHHHHHhhHhc---ChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHhhcCCCCCchh-hhhhc----
Q 021452 110 PKRDKVTYMYYTGRLEVFNE---NFPAADQKLSYALINCNPQ-SEANIRMILKYLIPVKLSIGILPKDWL-LEKYN---- 180 (312)
Q Consensus 110 ~~~~~v~y~YY~G~~~~~~~---~~~~A~~~L~~A~~~c~~~-~~~nk~~IL~yLIpv~Ll~G~~P~~~l-l~~y~---- 180 (312)
.....+.-+-..+|+++..+ +|.+....|...+...... ...|+..+.-|.+...+..+..+.+.. +...+
T Consensus 51 ~~~~~i~v~E~~ar~~i~~~d~~qf~~c~~~L~~lY~~~~~~~~~~~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~ 130 (204)
T PF03399_consen 51 ENDFAIKVYERIARFAIESGDLEQFNQCLSQLKELYDDLRDLPPSPNEAEFIAYYLLYLLCQNNIPDFHMELELLPSEIL 130 (204)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTHHHHHHHHHHHTT-T---THHHHHHTTS-HHHH
T ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcccchHHHHHHHHCchhhh
Confidence 34446666777778877654 4455555555555543111 235677777777766555554444322 11111
Q ss_pred ---hhch-HHHHHHHHhCCHHHHHHHHHHchHHHHHhcHH-HHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHH
Q 021452 181 ---LVEY-SNIVQALRRGDLRLLRHALEEHEDQFLRSGVY-LVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIV 255 (312)
Q Consensus 181 ---l~~y-~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~gly-lllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~ 255 (312)
...+ ..+..|+.+||..+|=+.+++.+...+...+. ..+.++|...++.+.+. + .+.+|++.+.
T Consensus 131 ~~~~i~~al~l~~a~~~gny~~ff~l~~~~~~~~l~~~l~~~~~~~iR~~al~~i~~a----y-------~~~i~l~~l~ 199 (204)
T PF03399_consen 131 SSPYIQFALELCRALMEGNYVRFFRLYRSKSAPYLFACLMERFFNRIRLRALQSISKA----Y-------RSSIPLSFLA 199 (204)
T ss_dssp TSHHHHHHHHHHHHH--TTHHHHHHHHT-TTS-HHHHHHHGGGHHHHHHHHHHHHHHH----S--------T-EEHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH----c-------CCCCCHHHHH
Confidence 1122 57889999999999999994444344433333 36678888777666542 2 1248999887
Q ss_pred HHHh
Q 021452 256 KALK 259 (312)
Q Consensus 256 ~al~ 259 (312)
.-|.
T Consensus 200 ~~L~ 203 (204)
T PF03399_consen 200 ELLG 203 (204)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 7654
No 57
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=73.16 E-value=40 Score=26.60 Aligned_cols=65 Identities=8% Similarity=-0.055 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
...+-..|++.++++-+...+..+-.. .|. .....+..|..+...++|.+|...+..|....|.+
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY-DPY--------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 445566788999999999888765432 122 13567889999999999999999999999876653
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=72.78 E-value=16 Score=33.30 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.....+.+|.+.++.+.+..+++.+... +. ..+...|.+..|.++...|++.+|.+.+..|++.-|.+.
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~--~~-----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEEL--PA-----APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH---T--------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhc--cC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 3455778899999999999999887642 21 124457888999999999999999999999999888654
No 59
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=72.76 E-value=21 Score=31.32 Aligned_cols=73 Identities=7% Similarity=0.101 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 71 ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 71 ~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
+..++...+-.+.+-++++.|..++..++.-..|+ .-.-+++.+.||.|.+....|+-.++.+....|++-+.
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~---~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~ 199 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPE---DDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFD 199 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchh---hhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 34444444555566778899999999988643332 12337899999999998899987777777777776444
No 60
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.76 E-value=8.2 Score=26.78 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+.||++.-+.-.++|.+|......+++.=|.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 3789999999999999999999999999877543
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=71.50 E-value=43 Score=28.02 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
....+-.+|++.|+++.+...++..-.. .|. . ....+..|.+++..+++.+|.+.+..+....
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~------~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTL-NPN------N--GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC------C--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3344667888889988888777543321 121 1 1355667888888899999999998888743
No 62
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=71.09 E-value=9.2 Score=22.62 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCC
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARI 103 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~ 103 (312)
..|.+++.|.+.|+++.+..+++.++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 568899999999999999999999886533
No 63
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=70.99 E-value=82 Score=28.58 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=50.1
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 79 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
-..+++-|+++.+-..++.+... .|. + +-.+.. .|.+|..++-.++|.+|...++..++..|.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~-yP~-s--~~a~~a--~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR-YPF-G--PYSQQV--QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCC-C--hHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 44567889999999988887753 232 1 223333 67899999999999999999999999988765
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=70.98 E-value=42 Score=28.09 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
......+-..|++.++++.+...+...-.. .|. .....+..|.++...+++.+|.+.+..|+...|...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH-DPD--------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 334445678899999999999877644321 122 135667789999999999999999999999877543
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=70.77 E-value=73 Score=27.88 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=28.8
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
+.+..|.+++..+++.+|...+..+...+|.+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 45688999999999999999999999999864
No 66
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=70.71 E-value=34 Score=32.30 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
....+..+|++.|+++.+..+++.+... |. .+.......++.+|..++..++|++|...|..+....+.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~---~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 139 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSR--PD---LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF 139 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcC--CC---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc
Confidence 3445678899999999999988766542 22 222334456778899999999999999999999886443
No 67
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=68.00 E-value=28 Score=30.55 Aligned_cols=67 Identities=6% Similarity=-0.148 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+-..|++.++++.+...+..+-.. .|. ......-+|..|..++..++|++|...+..+++..|.+.
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~-~p~-----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESR-YPF-----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 3455789999999998877755432 232 112233468999999999999999999999999988655
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=65.97 E-value=14 Score=34.53 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHH
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANI 153 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk 153 (312)
.-+||+|+.+...|++.+|..+|..|....|.+....+
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 45799999999999999999999999998876554433
No 69
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=64.24 E-value=15 Score=28.52 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=30.1
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 287 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 287 (312)
.=++++.|+..|. ++.++|+..|-.|+.+|+|--.|
T Consensus 64 ~Gv~v~~I~~~l~-----~~~~~v~~al~~L~~eG~IYsTi 99 (102)
T PF08784_consen 64 EGVHVDEIAQQLG-----MSENEVRKALDFLSNEGHIYSTI 99 (102)
T ss_dssp TTEEHHHHHHHST-----S-HHHHHHHHHHHHHTTSEEESS
T ss_pred CcccHHHHHHHhC-----cCHHHHHHHHHHHHhCCeEeccc
Confidence 4599999999985 68999999999999999985443
No 70
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=63.84 E-value=42 Score=32.28 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+...|.++|+++.+...+...-.. .|. ....+|.+|.+++..++|.+|..+|..|+..-|.+.
T Consensus 40 ~~~a~~~~~~g~~~eAl~~~~~Al~l-~P~--------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 40 ADRAQANIKLGNFTEAVADANKAIEL-DPS--------LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CcC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 45567889999999998876543221 121 134567889999999999999999999999877554
No 71
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=63.74 E-value=14 Score=32.54 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=33.4
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEccC
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 299 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~ 299 (312)
..+++.+++..++ +...++..-+..|..+|.|.|.|+-..++|-+|..
T Consensus 112 Kvv~ledla~~f~-----l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~e 159 (188)
T PF09756_consen 112 KVVNLEDLAAEFG-----LRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEE 159 (188)
T ss_dssp SEE-HHHHHHHH------S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE----
T ss_pred ceeeHHHHHHHcC-----CCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHH
Confidence 4589999999888 57889999999999999999999998888777764
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=63.43 E-value=50 Score=28.92 Aligned_cols=80 Identities=8% Similarity=0.006 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCC--CCCC------------CCchhhHHHHHHHHHHhhHhcChHHHH
Q 021452 70 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIF--DFEE------------FPKRDKVTYMYYTGRLEVFNENFPAAD 135 (312)
Q Consensus 70 ~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p--~~~~------------~~~~~~v~y~YY~G~~~~~~~~~~~A~ 135 (312)
++..+.....-.||++|+++....--..+.....+ ..+. -...+-....+.+|++++..+++++|.
T Consensus 14 ~~~~~~~~~~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 14 LTILMVFLCVGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44566777788999999987765544332211000 0000 001223457889999999999999999
Q ss_pred HHHHHHHHhcCccc
Q 021452 136 QKLSYALINCNPQS 149 (312)
Q Consensus 136 ~~L~~A~~~c~~~~ 149 (312)
..+..|.+.-|.+.
T Consensus 94 ~a~~~Al~l~P~~~ 107 (198)
T PRK10370 94 LAYRQALQLRGENA 107 (198)
T ss_pred HHHHHHHHhCCCCH
Confidence 99999999888654
No 73
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.25 E-value=24 Score=32.74 Aligned_cols=69 Identities=12% Similarity=0.168 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+.-+..| +-|++..+..-|+..-. ..|.-...|.+ +||+|..++-+++|++|...|..+.+..|++.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~-~YP~s~~~~nA-----~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIK-KYPNSTYTPNA-----YYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHH-cCCCCcccchh-----HHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 455555555 45669999887765443 24543333433 59999999999999999999999999888654
No 74
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=63.14 E-value=21 Score=30.54 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
+-.||.|..++.-|+...|.+.|..|+..|.
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 3458999999999999999999999999994
No 75
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=62.78 E-value=31 Score=28.51 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=47.8
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHch-HHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcc
Q 021452 184 YSNIVQALRRGDLRLLRHALEEHE-DQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLE 262 (312)
Q Consensus 184 y~~L~~Avk~Gnl~~f~~~l~~~~-~~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~ 262 (312)
-..+.+++.+||..+|-++++.+. ...+...+-.+.+..|.-+..-+ . ..| ++|+++.++..|.
T Consensus 44 i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iR~~i~~~i-~---~aY--------~sIs~~~la~~Lg--- 108 (143)
T PF10075_consen 44 IWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGFEDTIRERIAHLI-S---KAY--------SSISLSDLAEMLG--- 108 (143)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTHHHHHHHHHHHHH-H---HH---------SEE-HHHHHHHTT---
T ss_pred HHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH-H---HHH--------hHcCHHHHHHHhC---
Confidence 457889999999999999998751 11222222234556666554322 2 233 7899999999887
Q ss_pred CCCCHHHHHHHHHHh
Q 021452 263 MDMDVDEVECIVAIL 277 (312)
Q Consensus 263 ~~~~~~evE~ila~L 277 (312)
++.+|++.++.+.
T Consensus 109 --~~~~el~~~~~~~ 121 (143)
T PF10075_consen 109 --LSEEELEKFIKSR 121 (143)
T ss_dssp --S-HHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHc
Confidence 4688888888876
No 76
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=62.40 E-value=14 Score=25.51 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=26.5
Q ss_pred HHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 119 YYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 119 YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
|-.|+.++..++|++|...|+.+.+.-|.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~ 30 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN 30 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 457899999999999999999999987753
No 77
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=62.16 E-value=9.5 Score=21.98 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=20.4
Q ss_pred HHHHHHHHhhHhcChHHHHHHHH
Q 021452 117 YMYYTGRLEVFNENFPAADQKLS 139 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~ 139 (312)
..+.+|+.+...|++++|..++.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999999875
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.09 E-value=46 Score=30.75 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=51.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccch
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 150 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~ 150 (312)
+-..|+..|+++.+...++.+-.. .|.- |+ .-.-.|..|.++...+++.+|...|+...+..|.+..
T Consensus 186 LG~~y~~~g~~~~A~~~f~~vv~~-yP~s---~~--~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 186 LGQLNYNKGKKDDAAYYFASVVKN-YPKS---PK--AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCCC---cc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 356788999999999888766532 3321 11 2245678999999999999999999999999997653
No 79
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.06 E-value=1.9e+02 Score=29.63 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=85.1
Q ss_pred chhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHHhhcCCCCC-chhhh------hhc
Q 021452 111 KRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE---ANIRMILKYLIPVKLSIGILPK-DWLLE------KYN 180 (312)
Q Consensus 111 ~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~---~nk~~IL~yLIpv~Ll~G~~P~-~~ll~------~y~ 180 (312)
+.+...-+|-.|.+.+.-+.|++|+.||..|.+..+.... -|...-..||- .|+.-+ .+.++ ++.
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~-----~~~~ed~y~~ld~i~p~nt~s 437 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR-----IGDAEDLYKALDLIGPLNTNS 437 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH-----hccHHHHHHHHHhcCCCCCCc
Confidence 4666778899999999999999999999999997664331 12222222222 222110 01111 111
Q ss_pred -----hh---chHHHHHHHHhCCHHHHHHHHHH------chHHHHHhcHHHHHHhhHHHHH------HHHHHHHHHHhhc
Q 021452 181 -----LV---EYSNIVQALRRGDLRLLRHALEE------HEDQFLRSGVYLVLEKLELQVY------QRLFKKIYIIQKQ 240 (312)
Q Consensus 181 -----l~---~y~~L~~Avk~Gnl~~f~~~l~~------~~~~f~~~glylllerlr~lv~------r~L~kkv~~~~~~ 240 (312)
+. -|..=.-|+++|++.+-+.-+.+ +++.+.-.+.++++-..-..++ ||.+|....+.
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA-- 515 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA-- 515 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH--
Confidence 11 24445568899999877666644 6788887888887777777777 89999888775
Q ss_pred CCCCCCccccHHH
Q 021452 241 KDPSKAHQMKLDV 253 (312)
Q Consensus 241 ~~~~~~~~I~l~~ 253 (312)
.|.+.|+...
T Consensus 516 ---kKi~Di~vqL 525 (629)
T KOG2300|consen 516 ---KKIPDIPVQL 525 (629)
T ss_pred ---hcCCCchHHH
Confidence 2445555543
No 80
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=61.17 E-value=80 Score=25.71 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHH
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSY 140 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~ 140 (312)
-.+-++++..|+++-+...++.+-... |+ ..-.-.-++.++++++.+++|++|...|+.
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d-----~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANA-PD-----PELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC-CC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 345688999999999999998766532 32 111223467799999999999999999965
No 81
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=59.24 E-value=20 Score=29.57 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=35.2
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCC
Q 021452 246 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 291 (312)
Q Consensus 246 ~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~ 291 (312)
..++|+..++..+. ++...+-..+-+|...|.|+||-...+
T Consensus 20 d~r~~~~eia~~lg-----lS~~~v~~Ri~~L~~~GiI~~~~~~v~ 60 (154)
T COG1522 20 DARISNAELAERVG-----LSPSTVLRRIKRLEEEGVIKGYTAVLD 60 (154)
T ss_pred hCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHCCceeeEEEEEC
Confidence 46799999999988 689999999999999999999754433
No 82
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=58.69 E-value=35 Score=28.71 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=32.4
Q ss_pred CchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 110 PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 110 ~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
+......++|..|..+...++|++|..++..|+...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 66 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE 66 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 4566777889999999999999999999999998654
No 83
>PHA02992 hypothetical protein; Provisional
Probab=58.25 E-value=59 Score=34.26 Aligned_cols=43 Identities=9% Similarity=0.231 Sum_probs=36.6
Q ss_pred chHHHHHHH-HhCCHHHHHHHHHHchHHHHHhcHHHHHHhhHHH
Q 021452 183 EYSNIVQAL-RRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQ 225 (312)
Q Consensus 183 ~y~~L~~Av-k~Gnl~~f~~~l~~~~~~f~~~glylllerlr~l 225 (312)
.|.+|+..+ +.-|+..|.+.++=|..++++.+.+.++-|+-..
T Consensus 69 ~f~DLi~~i~~~~nve~ya~HI~fhk~~ilq~~~~~li~kCi~y 112 (728)
T PHA02992 69 LFIDLISVITKQKNVELYASHINFHKNEILQKCDKSLIAKCIPY 112 (728)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHhHHHHHHhcCHHHHHHHhhh
Confidence 478888776 8999999999999999999999999888775543
No 84
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=57.81 E-value=23 Score=29.71 Aligned_cols=36 Identities=8% Similarity=0.179 Sum_probs=33.1
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEE
Q 021452 246 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 286 (312)
Q Consensus 246 ~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 286 (312)
..|+|++.++..+. ++...|-.-+..|..+|.|+||
T Consensus 21 d~R~s~~eiA~~lg-----lS~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 21 NARTPYAELAKQFG-----VSPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred cCCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeeeE
Confidence 47899999999998 6899999999999999999986
No 85
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=57.40 E-value=31 Score=29.30 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=34.7
Q ss_pred CCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEe
Q 021452 245 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFA 288 (312)
Q Consensus 245 ~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIs 288 (312)
+..|+++++++.++. ++..-+-.-+..|...|.|+||.-
T Consensus 25 ~d~R~s~~eiA~~lg-----lS~~tv~~Ri~rL~~~GvI~~~~~ 63 (164)
T PRK11169 25 KDGRISNVELSKRVG-----LSPTPCLERVRRLERQGFIQGYTA 63 (164)
T ss_pred cCCCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEEEEE
Confidence 468999999999998 578889999999999999999754
No 86
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=57.15 E-value=1.4e+02 Score=32.67 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHH
Q 021452 43 SPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTG 122 (312)
Q Consensus 43 ~~~~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G 122 (312)
..+....+-..++++|+.=-.++ .+.|.|-..||--+++..|-.+--+....+ ...+....=+|.+|
T Consensus 248 d~~s~~~~~~ll~~ay~~n~~nP-------~~l~~LAn~fyfK~dy~~v~~la~~ai~~t------~~~~~~aes~Y~~g 314 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKENNENP-------VALNHLANHFYFKKDYERVWHLAEHAIKNT------ENKSIKAESFYQLG 314 (1018)
T ss_pred chHHHHHHHHHHHHHHhhcCCCc-------HHHHHHHHHHhhcccHHHHHHHHHHHHHhh------hhhHHHHHHHHHHH
Confidence 34566667777777776544443 245566667777788887777654332211 12333445579999
Q ss_pred HHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 123 RLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 123 ~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
|.|=.+|||++|+..+..|..--+.
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999984443
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=56.69 E-value=76 Score=26.44 Aligned_cols=69 Identities=9% Similarity=-0.102 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
....+-.+|.+.|+++.+...+...-.. .|.. ..........++..|+.+...+++++|...+.+|+..
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~-~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALER-NPFL-PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCc-HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 5566788999999999999877543321 1221 1122334455566777777899999888777777663
No 88
>PRK15331 chaperone protein SicA; Provisional
Probab=55.91 E-value=22 Score=30.69 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHH
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRM 155 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~ 155 (312)
|--+|-.+++++.+-....---.-+ +. +..| .||.|..++.-++-++|..+|+.|..+|.....+.|-.
T Consensus 77 Laa~~Q~~k~y~~Ai~~Y~~A~~l~-~~-dp~p-------~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~ 145 (165)
T PRK15331 77 LAAVCQLKKQFQKACDLYAVAFTLL-KN-DYRP-------VFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKAL 145 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-cC-CCCc-------cchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3445666666666665543211100 00 1112 59999999999999999999999999877555444433
No 89
>PF13041 PPR_2: PPR repeat family
Probab=55.62 E-value=25 Score=23.13 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCC
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRSIETARI 103 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~ 103 (312)
...|.++..|++.|+++.|..+++.+....+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGI 34 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 4568999999999999999999999997654
No 90
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=55.40 E-value=1.4e+02 Score=30.89 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+-.+|++.|+++.+..++..+-.. .|. .....++.|.+++..+++++|...+..|+...|.+.
T Consensus 164 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 227 (899)
T TIGR02917 164 GLAQLALAENRFDEARALIDEVLTA-DPG--------NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP 227 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence 3456778888888888887655432 121 134667889999999999999999999988777543
No 91
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=54.71 E-value=76 Score=31.29 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchH
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 151 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 151 (312)
+-+.+...+.+.+.+++++|-.+.+..-.. .|. + ....|+++++|+..++|++|.. |+..||-...+
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-sP~-------~-f~~W~~La~~Yi~~~d~e~ALl----aLNs~Pm~~~~ 300 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVEL-SPS-------E-FETWYQLAECYIQLGDFENALL----ALNSCPMLTYK 300 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-Cch-------h-HHHHHHHHHHHHhcCCHHHHHH----HHhcCcCCCCc
Confidence 667778888899999999999888644332 132 2 2456889999999999999986 55567754432
Q ss_pred HHHHHHHHHHHHH
Q 021452 152 NIRMILKYLIPVK 164 (312)
Q Consensus 152 nk~~IL~yLIpv~ 164 (312)
. +-.++-..|..
T Consensus 301 ~-k~~~~~~~p~~ 312 (395)
T PF09295_consen 301 D-KYKLKRPVPAK 312 (395)
T ss_pred c-chhhhcCCCcc
Confidence 2 22333344443
No 92
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=54.28 E-value=58 Score=30.03 Aligned_cols=85 Identities=14% Similarity=0.100 Sum_probs=57.5
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhc-ChHHHHHHHHHHHHhcCc-c--------chHH
Q 021452 83 FKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE-NFPAADQKLSYALINCNP-Q--------SEAN 152 (312)
Q Consensus 83 fkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~-~~~~A~~~L~~A~~~c~~-~--------~~~n 152 (312)
.+-|+.+++..++..++... +..+.-.......=.|-.|+-...++ +|++|-.+|+.|++.|.. . ...-
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~-~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLL-NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999998777531 11111223455566788999999999 999999999999998743 1 1123
Q ss_pred HHHHHHHHHHHHhhcC
Q 021452 153 IRMILKYLIPVKLSIG 168 (312)
Q Consensus 153 k~~IL~yLIpv~Ll~G 168 (312)
|-.||..|+-+.+-.|
T Consensus 83 r~~iL~~La~~~l~~~ 98 (278)
T PF08631_consen 83 RLSILRLLANAYLEWD 98 (278)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4556777765544334
No 93
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=54.15 E-value=33 Score=28.10 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=29.4
Q ss_pred HHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Q 021452 121 TGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIP 162 (312)
Q Consensus 121 ~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp 162 (312)
+|.-.+.+|++.+|-.||..|+.-||... ..-.|+..-+|
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP~--~LL~i~q~tlP 108 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQPA--ELLQIYQKTLP 108 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSHH--HHHHHHHHHS-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHH--HHHHHHHhhCC
Confidence 78888899999999999999999999633 44444444444
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=54.04 E-value=1.8e+02 Score=26.85 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=37.0
Q ss_pred HHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 81 IYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 81 ~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
+|.+.|+.+.+...++ +++. .|. ....++..|.++...++|++|.+.|..|++.-|..
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l--~P~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 131 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALAL--RPD--------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 131 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHc--CCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5777787777765543 3332 122 12445677777777788888888777777766643
No 95
>PRK11906 transcriptional regulator; Provisional
Probab=53.93 E-value=24 Score=35.33 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=31.3
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLI 161 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLI 161 (312)
=+||.|.+.+..|+.++|.++++.|++..|. +-+--|+|.+|
T Consensus 374 ~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~---~~~~~~~~~~~ 415 (458)
T PRK11906 374 LYYYRALVHFHNEKIEEARICIDKSLQLEPR---RRKAVVIKECV 415 (458)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCch---hhHHHHHHHHH
Confidence 3588888888888888888888888888772 33344566666
No 96
>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.64 E-value=18 Score=32.69 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=60.7
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhc
Q 021452 182 VEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWL 261 (312)
Q Consensus 182 ~~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~ 261 (312)
+.|..+..-+-.|++..+...-.+. -+-. ..-+.+|+.+..-.+.- ...-||+..+...+...
T Consensus 60 sa~lrlL~lFa~Gt~~Dy~aea~rl----p~Ls-~~q~~kLk~ltV~slas------------~~k~lpy~~Ll~~l~~~ 122 (258)
T KOG3250|consen 60 SAYLRLLELFAYGTYRDYSAEALRL----PKLS-LAQLNKLKHLTVVSLAS------------FEKCLPYLVLLRLLPSR 122 (258)
T ss_pred HHHHHHHHHHhcCchhhhhhhhhcC----CCCC-HHHHHhhhcceehhhhh------------hchhhhHHHHHhhccCC
Confidence 3577777778888777665433221 0000 11123444433333322 23567888887776643
Q ss_pred cCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEc
Q 021452 262 EMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLS 297 (312)
Q Consensus 262 ~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlS 297 (312)
..-|+|.++....+.|.++|+|+..++++-++
T Consensus 123 ----nvrelEd~iieamya~IlrGkldqr~q~leV~ 154 (258)
T KOG3250|consen 123 ----NVRELEDLIIEAMYADILRGKLDQRNQTLEVD 154 (258)
T ss_pred ----chhHHHHHHHHHHHHHHHHhhHHhhcceEeec
Confidence 45689999999999999999999999998764
No 97
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=53.62 E-value=51 Score=27.75 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=43.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHH-HHHHHHhhHhcC---------------hHHHHHHHHHH
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYM-YYTGRLEVFNEN---------------FPAADQKLSYA 141 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~-YY~G~~~~~~~~---------------~~~A~~~L~~A 141 (312)
+.-.||+-+++..+..-+...-. ..|.++.|-|= |..|..++-+.+ ..+|+..|..-
T Consensus 53 l~yayy~~~~y~~A~a~~~rFir-------LhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~l 125 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIR-------LHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQL 125 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH-------hCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHH
Confidence 47889999999999876654332 23555566674 447887777665 66677777766
Q ss_pred HHhcCccc
Q 021452 142 LINCNPQS 149 (312)
Q Consensus 142 ~~~c~~~~ 149 (312)
++..|.+.
T Consensus 126 v~~yP~S~ 133 (142)
T PF13512_consen 126 VRRYPNSE 133 (142)
T ss_pred HHHCcCCh
Confidence 66666543
No 98
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=52.28 E-value=3.2e+02 Score=29.12 Aligned_cols=125 Identities=13% Similarity=0.062 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCC-------CCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFD-------FEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~-------~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
...++..|.+.++++.+...+..+... .|. ....|..+.....+..|.++...+++++|.+.|+.+...-|.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~-~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINN-SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhc-CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344566778888888888887766543 231 123456667788899999999999999999999999998776
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCCCc-hhhhh----hc--h-hchHHHHHHHHhCCHHHHHHHHHH
Q 021452 148 QSEANIRMILKYLIPVKLSIGILPKD-WLLEK----YN--L-VEYSNIVQALRRGDLRLLRHALEE 205 (312)
Q Consensus 148 ~~~~nk~~IL~yLIpv~Ll~G~~P~~-~ll~~----y~--l-~~y~~L~~Avk~Gnl~~f~~~l~~ 205 (312)
+. .++..+.-+-+-.|+...- +.+++ .+ . ..|.....+.+.|++..-++.+++
T Consensus 392 n~-----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 392 NQ-----GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 53 2333333333334663221 11111 11 1 123444567888886665555554
No 99
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=51.53 E-value=63 Score=22.76 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcce
Q 021452 229 RLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 229 ~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~Ik 284 (312)
+.++-+|.+.. +...++..+|+..|+ ++...|-..+..|-.+|+|.
T Consensus 8 ~YL~~Iy~l~~-----~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 8 DYLKAIYELSE-----EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp HHHHHHHHHHH-----CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-----CCCCccHHHHHHHHC-----CChHHHHHHHHHHHHCCCEE
Confidence 45677777762 346789999999998 67888999999999999984
No 100
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=51.42 E-value=32 Score=19.86 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCC
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARI 103 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~ 103 (312)
..|.++..|.+.++++.+..+++.+....+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGI 31 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999887543
No 101
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.41 E-value=29 Score=31.44 Aligned_cols=88 Identities=20% Similarity=0.248 Sum_probs=49.2
Q ss_pred HHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHH-HHHHHHHhhcCCCCCchhhhh----hchhc-h-HHHH-HHH
Q 021452 120 YTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMIL-KYLIPVKLSIGILPKDWLLEK----YNLVE-Y-SNIV-QAL 191 (312)
Q Consensus 120 Y~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL-~yLIpv~Ll~G~~P~~~ll~~----y~l~~-y-~~L~-~Av 191 (312)
--|--.|.+|+|.+|...+++|+..||.....- |.|| .---.+.|=+|+--. .... -.|-+ | ..|. +|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~-rsIly~Nraaa~iKl~k~e~--aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEE-RSILYSNRAAALIKLRKWES--AIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHH-HHHHHhhhHHHHHHhhhHHH--HHHHHHhhHhcCchhHHHHHHHHH
Confidence 346667889999999999999999999877532 3332 111222222332100 0111 11222 3 2232 255
Q ss_pred HhCCHHHHHHHHHHchHHH
Q 021452 192 RRGDLRLLRHALEEHEDQF 210 (312)
Q Consensus 192 k~Gnl~~f~~~l~~~~~~f 210 (312)
---+..+|+.+++.+...+
T Consensus 177 ayek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKIL 195 (271)
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 4556678888888766543
No 102
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=51.11 E-value=25 Score=25.08 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=29.1
Q ss_pred cccHHHHHHHHhhc--c---CCCCHHHHHHHHHHhHHcCcce
Q 021452 248 QMKLDVIVKALKWL--E---MDMDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 248 ~I~l~~i~~al~~~--~---~~~~~~evE~ila~LI~~G~Ik 284 (312)
.+|++.|...|+.. . .+.+.+|++..+..++.+|.+.
T Consensus 11 sl~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~lv~e~~L~ 52 (60)
T PF08672_consen 11 SLPLDRIHSMLKMFPKDPGGYDISLEELQEFLDRLVEEGKLE 52 (60)
T ss_dssp SEEHHHHHHHHHHH-GGG--TT--HHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHCCcEE
Confidence 38999998888765 2 2479999999999999999874
No 103
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=50.92 E-value=72 Score=32.97 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=39.6
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 79 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.++|.+.|+++.+-..+..... -+.......++..|..++..++|.+|...|..|....|.+
T Consensus 97 a~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 158 (899)
T TIGR02917 97 ARAYLLQGKFQQVLDELPGKTL--------LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS 158 (899)
T ss_pred HHHHHHCCCHHHHHHhhccccc--------CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3455555555555444332211 0223445667888888888889999999998888877754
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=50.59 E-value=1.3e+02 Score=24.62 Aligned_cols=63 Identities=8% Similarity=-0.174 Sum_probs=47.8
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.-..+++.|+++-+-..+...-.. -|. ...+++-.|.++...++|++|...+..|+...|.+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~-~P~--------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMA-QPW--------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCC--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 356778999999888776543221 122 236778899999999999999999999999877654
No 105
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=49.45 E-value=93 Score=32.00 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+|..|.+++..++|++|..+|..|+..-|..
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 345667777777777777777777777766543
No 106
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=49.16 E-value=47 Score=28.73 Aligned_cols=57 Identities=12% Similarity=-0.045 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCC
Q 021452 112 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGIL 170 (312)
Q Consensus 112 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~ 170 (312)
.+.-.=+.-.|.+|+--||+++|.+++..+...|.. .+++.-+...+|=+++..|..
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCCH
Confidence 333444567899999999999999999999999874 345556666677666666543
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=48.72 E-value=1.2e+02 Score=26.51 Aligned_cols=18 Identities=11% Similarity=-0.064 Sum_probs=11.3
Q ss_pred HHHHHhcCChhhHHHHHH
Q 021452 79 FKIYFKLGTVHLCRSVIR 96 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik 96 (312)
-++|...|+++.+...++
T Consensus 80 g~~~~~~g~~~~A~~a~~ 97 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYR 97 (198)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 456666777776666554
No 108
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=48.43 E-value=1.6e+02 Score=29.49 Aligned_cols=50 Identities=16% Similarity=0.379 Sum_probs=40.3
Q ss_pred cCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 85 LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 85 l~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
-...+.|..++..+.. .||+ -+-|.|+.||++..+++.++|-+.|+.|..
T Consensus 246 ~~~~~~a~~lL~~~~~-------~yP~--s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~ 295 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK-------RYPN--SALFLFFEGRLERLKGNLEEAIESFERAIE 295 (468)
T ss_pred CCCHHHHHHHHHHHHH-------hCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Confidence 3466778888876654 3554 357899999999999999999999999995
No 109
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=47.64 E-value=74 Score=33.32 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=34.8
Q ss_pred CchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 110 PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 110 ~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
|....+.=.||+..-+-..|+++.|.++++.|+.|||.
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT 403 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT 403 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch
Confidence 56777888899999999999999999999999999995
No 110
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=47.41 E-value=24 Score=20.10 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIET 100 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~ 100 (312)
..|.++..|.+.|+++.+..+++.+..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 458899999999999999999988765
No 111
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=47.23 E-value=30 Score=22.28 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.6
Q ss_pred HHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 120 YTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 120 Y~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
-+|-+.+-.++|.+|-+.|..|+..
T Consensus 6 ~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 6 LLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4789999999999999999999984
No 112
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=46.98 E-value=49 Score=21.66 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=27.7
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcce
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~Ik 284 (312)
..++..+++..+. ++..-|-..+-.|..+|+|+
T Consensus 16 ~~~t~~ela~~~~-----is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 16 PRITQKELAEKLG-----ISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp TTS-HHHHHHHHT-----S-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhC-----CCHHHHHHHHHHHHHCcCcC
Confidence 5689999999988 57889999999999999985
No 113
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=46.80 E-value=98 Score=21.81 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 287 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 287 (312)
...+.++|+..+. ++...|...|.+|..+|+|.-.-
T Consensus 21 ~~~t~~eIa~~l~-----i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 21 GPATAEEIAEELG-----ISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp CHEEHHHHHHHHT-----SSHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEEc
Confidence 4578899999988 68999999999999999997544
No 114
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=46.21 E-value=1.7e+02 Score=30.11 Aligned_cols=66 Identities=9% Similarity=-0.033 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
..+.+...-.|-..++++.+..++.. ++.. | ... ..+..+|+++...|++++|.+.|+.|....+.
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p------~~~--~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIID--P------ECD--IAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--C------CcH--HHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 33445445555567888888887753 3321 2 222 24567899999999999999999999997654
No 115
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=46.01 E-value=25 Score=34.52 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-C---------CCCC-------------CCCCchhhHHHHHHHHHHhhH
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-R---------IFDF-------------EEFPKRDKVTYMYYTGRLEVF 127 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~-~---------~p~~-------------~~~~~~~~v~y~YY~G~~~~~ 127 (312)
--+.....--+.++|..+-+..+++. ++.. + +++- ...|... --++++|++++-
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k 340 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALK 340 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHH
Confidence 44555566667777877777776642 3221 0 1111 1122222 467999999999
Q ss_pred hcChHHHHHHHHHHHHhcCccc
Q 021452 128 NENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 128 ~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
++.|.+|.++|..|++.-|..+
T Consensus 341 ~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 341 NKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred hhHHHHHHHHHHHHHhcCCChh
Confidence 9999999999999998766544
No 116
>PRK14574 hmsH outer membrane protein; Provisional
Probab=45.84 E-value=1.8e+02 Score=31.53 Aligned_cols=134 Identities=10% Similarity=0.025 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCC-------CCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFD-------FEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~-------~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
+.....||..|...++++.+..++..+... .|. ....|..+..++..-.+.++.+.+++.+|++.|+.....
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQ-TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333467899999999999999999988863 341 124578888999999999999999999999999999999
Q ss_pred cCccchHHHHHHHHHHHHHHhhcCC-CCCchhhhhh-------c---hhchHHHHHHHHhCCHHHHHHHHHHchHHHHHh
Q 021452 145 CNPQSEANIRMILKYLIPVKLSIGI-LPKDWLLEKY-------N---LVEYSNIVQALRRGDLRLLRHALEEHEDQFLRS 213 (312)
Q Consensus 145 c~~~~~~nk~~IL~yLIpv~Ll~G~-~P~~~ll~~y-------~---l~~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~ 213 (312)
.|-+.. .. +.-..+...+ -|... .+.+ + -..+.....+...|++..-+..+++-...+=++
T Consensus 446 aP~n~~----l~---~~~A~v~~~Rg~p~~A-~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 446 APANQN----LR---IALASIYLARDLPRKA-EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred CCCCHH----HH---HHHHHHHHhcCCHHHH-HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 885542 11 1223333321 22221 1111 1 113445556777788777777776543333333
Q ss_pred c
Q 021452 214 G 214 (312)
Q Consensus 214 g 214 (312)
.
T Consensus 518 ~ 518 (822)
T PRK14574 518 I 518 (822)
T ss_pred h
Confidence 3
No 117
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=45.58 E-value=44 Score=25.81 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=31.7
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 287 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 287 (312)
.++|.+.++..+. ++...+-..+..|..+|+|+|+-
T Consensus 16 ~~~~~~~la~~l~-----~s~~tv~~~l~~L~~~g~i~~~~ 51 (108)
T smart00344 16 ARISLAELAKKVG-----LSPSTVHNRVKRLEEEGVIKGYT 51 (108)
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeeceE
Confidence 4789999999987 68999999999999999998643
No 118
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=45.44 E-value=49 Score=28.94 Aligned_cols=64 Identities=5% Similarity=-0.079 Sum_probs=47.5
Q ss_pred HHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 80 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 80 k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+++.|++..+...++.+... .|. .+-++.. .|..|..+.-.++|.+|...++.-++..|.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~-~P~---s~~a~~A--~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDR-YPN---SPYAPQA--QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH--TT---STTHHHH--HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHCCCHHHHHHHHHHHHHH-CCC---ChHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4678999999999999988864 343 2334444 36889999999999999999999999988765
No 119
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=45.14 E-value=2.9e+02 Score=28.21 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhh-hhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHH
Q 021452 47 LKAAGSFLMKVFG-VLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 47 le~~~~~i~~~f~-~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
+|.|-.....+.+ .|.+.+.+...+....+.+-..|..++++.-+.++++ ++.... -.+. -..-+.++.+-=+|..
T Consensus 215 ~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e-~~~G-~~h~~va~~l~nLa~l 292 (508)
T KOG1840|consen 215 LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE-EVFG-EDHPAVAATLNNLAVL 292 (508)
T ss_pred HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HhcC-CCCHHHHHHHHHHHHH
Confidence 3333443333333 3445556677788888889999999999999999885 333210 0000 1234567777888999
Q ss_pred hhHhcChHHHHHHHHHHHHhcC
Q 021452 125 EVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
|.-.|+|.+|+.++..|+.-.-
T Consensus 293 y~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 293 YYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred HhccCChHHHHHHHHHHHHHHH
Confidence 9999999999999999998543
No 120
>PRK09954 putative kinase; Provisional
Probab=45.04 E-value=68 Score=30.59 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=37.0
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceE--E-EeeCCeEEEE
Q 021452 246 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG--Y-FAHKSKVVVL 296 (312)
Q Consensus 246 ~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG--y-Ish~~~~lVl 296 (312)
..+++.+.++..|. ++...|...+.+|..+|+|+| | +++...++|+
T Consensus 15 ~~~~s~~~la~~l~-----~s~~~v~~~i~~L~~~g~i~~~~~~l~~~~~v~vi 63 (362)
T PRK09954 15 NPLIQQNEIADILQ-----ISRSRVAAHIMDLMRKGRIKGKGYILTEQEYCVVV 63 (362)
T ss_pred CCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHCCCcCCcEEEEcCCccEEEE
Confidence 35899999999998 688999999999999999976 4 3344455555
No 121
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=44.98 E-value=44 Score=32.54 Aligned_cols=36 Identities=17% Similarity=0.057 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHhhHhcChHHHHHHHH--HHHHhcCc
Q 021452 112 RDKVTYMYYTGRLEVFNENFPAADQKLS--YALINCNP 147 (312)
Q Consensus 112 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~--~A~~~c~~ 147 (312)
...+.++...|++++..++|.+|.++|+ .|++..|.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 3335788889999999999999999999 57776553
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.67 E-value=1.9e+02 Score=27.09 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccch
Q 021452 71 ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 150 (312)
Q Consensus 71 ~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~ 150 (312)
..++.-++|-.-.-.+..++++..++.+.. +||.|.+|.=. .|+..=..++|++|.+.++.-+..-|.+..
T Consensus 51 ~w~l~EqV~IAAld~~~~~lAq~C~~~L~~-------~fp~S~RV~~l--kam~lEa~~~~~~A~e~y~~lL~ddpt~~v 121 (289)
T KOG3060|consen 51 IWTLYEQVFIAALDTGRDDLAQKCINQLRD-------RFPGSKRVGKL--KAMLLEATGNYKEAIEYYESLLEDDPTDTV 121 (289)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------hCCCChhHHHH--HHHHHHHhhchhhHHHHHHHHhccCcchhH
Confidence 345556667777788999999999998884 46788887543 245555679999999999988887776665
Q ss_pred HHHHHH
Q 021452 151 ANIRMI 156 (312)
Q Consensus 151 ~nk~~I 156 (312)
..+|++
T Consensus 122 ~~KRKl 127 (289)
T KOG3060|consen 122 IRKRKL 127 (289)
T ss_pred HHHHHH
Confidence 556655
No 123
>PHA02608 67 prohead core protein; Provisional
Probab=44.29 E-value=1.1e+02 Score=23.13 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHH
Q 021452 185 SNIVQALRRGDLRLLRHALEE 205 (312)
Q Consensus 185 ~~L~~Avk~Gnl~~f~~~l~~ 205 (312)
..|++||++||+..-++....
T Consensus 2 e~lIeAIKS~DLV~akK~F~~ 22 (80)
T PHA02608 2 EDLIEAIKSGDLVEAKKEFAS 22 (80)
T ss_pred hHHHHHHhcCcHHHHHHHHHH
Confidence 468999999999876655543
No 124
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=43.77 E-value=1.3e+02 Score=29.60 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHH-HHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRS-VIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~-lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.-+.+.+--+|.|++.+.-|-. .-++++-. |.+ +.=+|-.|+.++..++|+.|...|+.|...-|.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--------~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD--------PNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--------CCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 4466778889999999885542 22334321 111 34468899999999999999999999999888654
No 125
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=43.35 E-value=2.4e+02 Score=26.15 Aligned_cols=65 Identities=6% Similarity=-0.091 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
....+-.+|.+.|+++.+...+...-.. .|. +....+...+..|++++..|++++|...+..+..
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~-~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDT-WDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4455677888999999888877643321 121 1122234556799999999999999999999864
No 126
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=42.97 E-value=62 Score=25.46 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=28.6
Q ss_pred chhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 111 KRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 111 ~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
+..+..-....|.+.+.+|||++|++.+..|-++
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445556788999999999999999999999665
No 127
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=42.45 E-value=45 Score=22.89 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=20.8
Q ss_pred hHhcChHHHHHHHHHHHHhcCccc
Q 021452 126 VFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+.+++|++|.+.|+.++...|.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~ 25 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNP 25 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCH
Confidence 567899999999999999988644
No 128
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.36 E-value=1.8e+02 Score=26.77 Aligned_cols=44 Identities=18% Similarity=0.362 Sum_probs=29.6
Q ss_pred hhchHH-HHHHHHhCCHHHHHHHHHHchHHHHHhcHHH-HHHhhHH
Q 021452 181 LVEYSN-IVQALRRGDLRLLRHALEEHEDQFLRSGVYL-VLEKLEL 224 (312)
Q Consensus 181 l~~y~~-L~~Avk~Gnl~~f~~~l~~~~~~f~~~glyl-llerlr~ 224 (312)
+..|.. |+.++.++|...|....++++..+-++..|. .++++..
T Consensus 191 llnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~ 236 (260)
T PF04190_consen 191 LLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQ 236 (260)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 444543 6789999999999999999999877765553 5555544
No 129
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.57 E-value=31 Score=28.89 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=31.0
Q ss_pred chhhHHHHHH-----HHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 111 KRDKVTYMYY-----TGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 111 ~~~~v~y~YY-----~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+.....=.|+ +|.-++.+++++++-.||..|+.-|++..
T Consensus 72 ~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 72 SDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHH
Confidence 3444444555 68888999999999999999999999754
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=39.93 E-value=1.6e+02 Score=28.24 Aligned_cols=61 Identities=13% Similarity=-0.011 Sum_probs=46.6
Q ss_pred HHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 79 FKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
-..+|+-++++.|-..++. ++. .|. -..+++..|..++..++|.+|...+..|+...|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~--------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPN--------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLA 70 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 4567788898888877753 332 132 135778899999999999999999999999887544
No 131
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=39.79 E-value=3.9e+02 Score=30.00 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
|+....+-..+++.++++.+...++..-.. .|. . ..-++.+|.++...+++++|.++|..|++.-|.+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~------~--~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQV-DNT------D--SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC------C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 445555677889999999999888654432 132 1 13456789999999999999999999999877644
No 132
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=39.71 E-value=25 Score=21.63 Aligned_cols=21 Identities=10% Similarity=-0.008 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhHhcChHHHHH
Q 021452 116 TYMYYTGRLEVFNENFPAADQ 136 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~ 136 (312)
.-+|.+|.++...|++++|.+
T Consensus 14 ~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHHHHHHHCcCHHhhcC
Confidence 467889999999999999863
No 133
>PRK12370 invasion protein regulator; Provisional
Probab=39.41 E-value=1.7e+02 Score=29.73 Aligned_cols=61 Identities=11% Similarity=-0.067 Sum_probs=44.5
Q ss_pred HHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 79 FKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
-.+|...|+++.+...++ +++- .|+ .. ..+|+.|.+++..|++++|.+++..|++..|...
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l--~P~------~~--~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLL--SPI------SA--DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHh--CCC------CH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 346677888888777664 3332 132 11 3568889999999999999999999999888643
No 134
>PHA02695 hypothetical protein; Provisional
Probab=39.08 E-value=2.5e+02 Score=29.77 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=36.2
Q ss_pred chHHHHHHH-HhCCHHHHHHHHHHchHHHHHhcHHHHHHhhHHH
Q 021452 183 EYSNIVQAL-RRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQ 225 (312)
Q Consensus 183 ~y~~L~~Av-k~Gnl~~f~~~l~~~~~~f~~~glylllerlr~l 225 (312)
.|.+|+..+ +.-|+..|.+.++-|...+++.+.+.++-|+-..
T Consensus 68 ~~~DLi~~i~~~~nve~y~~HI~f~K~~ilq~~~~~li~kCi~y 111 (725)
T PHA02695 68 TPEDLLEELSRRRCGALFARHIEFHTPYLVQFADYALLCRCIPY 111 (725)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHhHHHHHHhcCHHHHHHHhhh
Confidence 368887666 8999999999999999999999999888776543
No 135
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=38.90 E-value=1e+02 Score=23.32 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 286 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 286 (312)
.+.+.+++...|. .+.+-||.+|..++.+|.|.--
T Consensus 15 gr~s~~~Ls~~~~-----~p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 15 GRMEAAQISQTLN-----TPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred CcccHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEee
Confidence 5788888888887 6899999999999999998644
No 136
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=38.77 E-value=32 Score=25.15 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhhHhcChHHHHHHHHH
Q 021452 114 KVTYMYYTGRLEVFNENFPAADQKLSY 140 (312)
Q Consensus 114 ~v~y~YY~G~~~~~~~~~~~A~~~L~~ 140 (312)
.-.|.|++|.+++..++|.+|.+.++.
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345888899999999999999999888
No 137
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.27 E-value=98 Score=28.55 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=38.8
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEcc
Q 021452 246 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 298 (312)
Q Consensus 246 ~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK 298 (312)
+.-++|.+++..+.+ -..++-.-+.+++.+|.+.|.|+-..+++-+|-
T Consensus 212 nKvV~ledLas~f~L-----rtqd~inriq~~l~eg~ltGVmDDRGKfIYIS~ 259 (299)
T KOG3054|consen 212 NKVVPLEDLASEFGL-----RTQDSINRIQELLAEGLLTGVMDDRGKFIYISM 259 (299)
T ss_pred cCeeeHHHHHHHhCc-----cHHHHHHHHHHHHHhhhheeeecCCCceEEecH
Confidence 356899999998874 345566688999999999999999888887763
No 138
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=37.28 E-value=1.6e+02 Score=29.64 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhH-HHHHHHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKV-TYMYYTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v-~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
.--.+.+--.|+++|+++-+-..++ +++-. |+ .... .-+|.+|..|...+++++|.++|..|+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd------~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PN------PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555668899999999998875 46532 32 1111 23589999999999999999999999995
No 139
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=37.24 E-value=1.8e+02 Score=21.87 Aligned_cols=26 Identities=42% Similarity=0.617 Sum_probs=21.9
Q ss_pred hhchHHHHHHHHhCCHHHHHHHHHHc
Q 021452 181 LVEYSNIVQALRRGDLRLLRHALEEH 206 (312)
Q Consensus 181 l~~y~~L~~Avk~Gnl~~f~~~l~~~ 206 (312)
...+..|++|++.||..+-.+++..|
T Consensus 97 ~~~h~~i~~ai~~~d~~~a~~~~~~h 122 (125)
T PF07729_consen 97 LEEHREIIDAIRAGDPEAAREALRQH 122 (125)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44689999999999999999998875
No 140
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=36.77 E-value=3.4e+02 Score=25.08 Aligned_cols=64 Identities=9% Similarity=-0.124 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
....+-.+|...|+++.+...++..-.. .|. . .......|.++...+++++|..++..+....+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~-~p~------~--~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALEL-NPD------D--AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC------C--cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 3334444555566655555544322211 121 0 23344456666566666666666666665444
No 141
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=36.57 E-value=96 Score=33.10 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCChhhHHH--HHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 75 TCQLFKIYFKLGTVHLCRS--VIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~--lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
.--+-++|.+.|+..++.. +++..=. +- |..+ .-.||+|.+...+||.++|-++|+.|...
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr--~d-----p~n~--eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALR--LD-----PLNH--EAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHh--hC-----CCCH--HHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 3446788999999998887 6653221 10 1222 56799999999999999999999999984
No 142
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=36.53 E-value=3e+02 Score=28.80 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
++.|.++..|.|.|+++.+..++..+.. .+.++|. -+...|+..|++++|.+.|....+
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~~~vt~n-~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPE-----------KTTVAWN-SMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCC-----------CChhHHH-HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999986653 1335553 245557888999999999988765
No 143
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=35.64 E-value=2.2e+02 Score=29.76 Aligned_cols=15 Identities=7% Similarity=-0.148 Sum_probs=10.4
Q ss_pred HHHhHHcCcceEEEe
Q 021452 274 VAILIHKNLVKGYFA 288 (312)
Q Consensus 274 la~LI~~G~IkGyIs 288 (312)
+.+.+.+|.+=|.+.
T Consensus 538 i~~aLk~g~~v~il~ 552 (656)
T PRK15174 538 CMQTLHSGQSLVVAI 552 (656)
T ss_pred HHHHHHcCCeEEEEe
Confidence 556677887777763
No 144
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.71 E-value=83 Score=30.92 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=42.0
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchH
Q 021452 79 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 151 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 151 (312)
--+||++|+++.+-+..+.+.+.+.|+ ++ ---|++..+|+-+.|.+|.. +..+||++...
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~------~e---l~vnLAcc~FyLg~Y~eA~~----~~~ka~k~pL~ 123 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAP------AE---LGVNLACCKFYLGQYIEAKS----IAEKAPKTPLC 123 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCC------cc---cchhHHHHHHHHHHHHHHHH----HHhhCCCChHH
Confidence 357999999999999999887654332 22 12356677777788899985 44567865543
No 145
>PF12854 PPR_1: PPR repeat
Probab=34.25 E-value=77 Score=19.32 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHh
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRSI 98 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~i 98 (312)
+..|.++..|.|.|+++-+..+++.+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56789999999999999999998765
No 146
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=34.09 E-value=1e+02 Score=20.62 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=28.3
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcce
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~Ik 284 (312)
..++++++..++. ++...+--++..|...|++.
T Consensus 17 ~~~t~~eia~~~g-----l~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 17 GPLTLSEIARALG-----LPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp SCEEHHHHHHHHT-----S-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCcCee
Confidence 4489999999988 57889999999999999985
No 147
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.17 E-value=79 Score=24.51 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 114 KVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 114 ~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
...=+|.-|+++.-+||+..|+.++++|.-
T Consensus 40 ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g 69 (90)
T COG1849 40 MAESYFEDAKYFLEKGDYVTAFAALSYAHG 69 (90)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344467789999999999999999999987
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=32.71 E-value=1.6e+02 Score=26.65 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcC
Q 021452 112 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIG 168 (312)
Q Consensus 112 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G 168 (312)
......-++.|++|+-.++|..|-.-+++.++++|.+.. ....|-+++-.-.-+|
T Consensus 172 ~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~--~~eal~~l~~ay~~lg 226 (243)
T PRK10866 172 DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA--TRDALPLMENAYRQLQ 226 (243)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHHHHcC
Confidence 344567789999999999999999999999999997653 4455555555444444
No 149
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=32.46 E-value=2.1e+02 Score=30.44 Aligned_cols=63 Identities=10% Similarity=-0.124 Sum_probs=34.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.+..++...|+++.+...+..+-.. .|. . ...++..|.++.-.+++.+|.+.|..|+..-|.+
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~-~P~------n--~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN-APG------N--QGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC------C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 3444555667766666666544321 121 1 1345556666666666666666666666655543
No 150
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=31.71 E-value=1.5e+02 Score=25.76 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcC
Q 021452 113 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIG 168 (312)
Q Consensus 113 ~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G 168 (312)
.....-++.|++|+-.+.|..|-..+++.+++.|.+.. ...-|.+++=...-+|
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~--~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA--AEEALARLAEAYYKLG 192 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHHHHhC
Confidence 34556789999999999999999999999999997653 3334445554433344
No 151
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=57 Score=33.57 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Q 021452 82 YFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLI 161 (312)
Q Consensus 82 Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLI 161 (312)
|.++||..+++.++..--.. -.++.+..++ .|.+++-.++|.+|..+|+.|+..-......-. .|.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai--------~P~Dplv~~E-lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-----~w~ 455 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAI--------APSDPLVLHE-LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-----FWE 455 (611)
T ss_pred HHHhccHHHHHHHHHHHHhc--------CCCcchhhhh-hhheeehHhhhHHHHHHHHHHHHHhhhcccccc-----chh
Q ss_pred HHHhhcC
Q 021452 162 PVKLSIG 168 (312)
Q Consensus 162 pv~Ll~G 168 (312)
|....+|
T Consensus 456 p~~~NLG 462 (611)
T KOG1173|consen 456 PTLNNLG 462 (611)
T ss_pred HHHHhHH
No 152
>PLN03218 maturation of RBCL 1; Provisional
Probab=31.12 E-value=8e+02 Score=27.57 Aligned_cols=62 Identities=15% Similarity=0.023 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
..|.++..|.+.|+++.+..+++.+....+++ ..++|. -+...++..+++++|.+.|.+...
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p-------~~~tyn-sLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKG-------TPEVYT-IAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-------ChHHHH-HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555444332211 112222 122234555666666666665554
No 153
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=30.60 E-value=6e+02 Score=25.98 Aligned_cols=83 Identities=19% Similarity=0.120 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 69 VGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 69 ~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
...+++...+-+.|-++|+++.+-..|. +|+.+ |. .+.+++..|+++=-.|++.+|.+.++.|=..-..
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt--------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PT--------LVELYMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 4456666777888999999998888775 66653 32 3678999999999999999999999999886555
Q ss_pred cchHHHHHHHHHHHH
Q 021452 148 QSEANIRMILKYLIP 162 (312)
Q Consensus 148 ~~~~nk~~IL~yLIp 162 (312)
+..-|-+ .-+|++=
T Consensus 261 DRyiNsK-~aKy~LR 274 (517)
T PF12569_consen 261 DRYINSK-CAKYLLR 274 (517)
T ss_pred hHHHHHH-HHHHHHH
Confidence 4443322 2344443
No 154
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.50 E-value=2.8e+02 Score=25.53 Aligned_cols=41 Identities=10% Similarity=-0.011 Sum_probs=35.6
Q ss_pred CCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 109 FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 109 ~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+..+-+--+|.=|+.++|+..|...|+.|+++-|...
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~ 69 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY 69 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 45667777888899999999999999999999999988654
No 155
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=30.29 E-value=49 Score=27.94 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=30.8
Q ss_pred CCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHc-Ccc
Q 021452 245 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHK-NLV 283 (312)
Q Consensus 245 ~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~-G~I 283 (312)
++-.|+-+.+++.|.-.|..++++|||.++|...+. |.|
T Consensus 101 g~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG~i 140 (152)
T KOG0030|consen 101 GNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNGCI 140 (152)
T ss_pred CCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCCcC
Confidence 456788888888877666668999999999998876 544
No 156
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.10 E-value=73 Score=33.23 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=55.6
Q ss_pred CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc---CCCCCCCCC-----chhhHHHHH-----------------H
Q 021452 66 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA---RIFDFEEFP-----KRDKVTYMY-----------------Y 120 (312)
Q Consensus 66 sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~---~~p~~~~~~-----~~~~v~y~Y-----------------Y 120 (312)
++..+.-++..++=+.||.+..++.|+.++.-+... .+..++.|+ -.+.|.--| -
T Consensus 347 ~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca 426 (638)
T KOG1126|consen 347 SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCA 426 (638)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHH
Confidence 334444488999999999999999999999876643 122222222 111222111 2
Q ss_pred HHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 121 TGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 121 ~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.|-++-.++|++.|-++|..|...-|
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp 452 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDP 452 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCC
Confidence 78888889999999999999988555
No 157
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=30.06 E-value=1.3e+02 Score=29.09 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH-hhccCCCC-----------------------CCCCCchhhHHHHHHHHHHhhHhc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRS-IETARIFD-----------------------FEEFPKRDKVTYMYYTGRLEVFNE 129 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~-----------------------~~~~~~~~~v~y~YY~G~~~~~~~ 129 (312)
+.....+.+.+.|+.+.+..++.. ++...-|. ....| +-...++..|++++..+
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P--~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHG--DTPLLWSTLGQLLMKHG 342 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCC
Confidence 334567778888888888877643 33210010 01112 22357889999999999
Q ss_pred ChHHHHHHHHHHHHhcCc
Q 021452 130 NFPAADQKLSYALINCNP 147 (312)
Q Consensus 130 ~~~~A~~~L~~A~~~c~~ 147 (312)
+|.+|.++|+.++..-|.
T Consensus 343 ~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 343 EWQEASLAFRAALKQRPD 360 (398)
T ss_pred CHHHHHHHHHHHHhcCCC
Confidence 999999999999998664
No 158
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=29.97 E-value=5.2e+02 Score=26.93 Aligned_cols=155 Identities=19% Similarity=0.141 Sum_probs=86.9
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhhhhcCC----------------CCchhHHH
Q 021452 9 NCMLLQCFHSGVSELGIRLGFGSIADRELASNGKSPEKLKAAGSFLMKVFGVLAGK----------------GSKRVGAL 72 (312)
Q Consensus 9 ~~~~~~~~~~~~~~~~lr~~la~~~D~~~~~~~~~~~~le~~~~~i~~~f~~~~~d----------------~sKk~~~~ 72 (312)
++|-+-..+. .++++|. +..++|-..++.+ +++-++++++|+..-+- +.-|.|..
T Consensus 126 dmPnLl~~H~--kl~~ard-F~eq~~~~a~e~~------~D~~~tv~k~fs~l~~~s~~Fd~lvl~~~~~iie~vksghi 196 (742)
T COG5173 126 DMPNLLAYHT--KLYDARD-FGEQLDMYATEIS------HDDYVTVNKAFSTLEKNSLDFDALVLEISEEIIENVKSGHI 196 (742)
T ss_pred CChHHHHHHH--HHccHHH-HhHHHHHHHhhcc------cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhH
Confidence 4566666777 8899999 9999998874432 34456677777654422 14577788
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCC--chhhHHHHHHHHHH-----h-hHhcChHHHHHHHHHHHH
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFP--KRDKVTYMYYTGRL-----E-VFNENFPAADQKLSYALI 143 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~--~~~~v~y~YY~G~~-----~-~~~~~~~~A~~~L~~A~~ 143 (312)
..+-.+||||=+--.-+..-.-|+ +.+ .+|.-.+-| +.-+-.|+-|..+- . ..++==..+.+.|..+..
T Consensus 197 ~~~~~ifkIve~EE~~De~~~~Irdaks--~lp~SQD~P~~~~~~gmyr~~~~~~~r~lk~f~i~~i~~sv~e~F~r~r~ 274 (742)
T COG5173 197 EAMDKIFKIVEKEEARDELTRKIRDAKS--ELPKSQDNPVLKEFYGMYRMYATRKTRKLKDFVIKSIEVSVKEKFDRLRN 274 (742)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHh--cCCCcCCCcchHHHHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHH
Confidence 888899999977655444332222 222 244422223 12222333332211 0 111111245566666766
Q ss_pred hcCcc--chHHHHHHHHHHHHHHhhc-CCCCCch
Q 021452 144 NCNPQ--SEANIRMILKYLIPVKLSI-GILPKDW 174 (312)
Q Consensus 144 ~c~~~--~~~nk~~IL~yLIpv~Ll~-G~~P~~~ 174 (312)
.+-.+ +--|..=|++=|+-+.=.. .-.||+.
T Consensus 275 ~yi~d~sgelnmDfIf~dL~~i~e~i~~~~pp~~ 308 (742)
T COG5173 275 EYIFDNSGELNMDFIFKDLSFIRENISLSFPPFD 308 (742)
T ss_pred HHHhcCcchhhhHHHHHHHHHHHHHccccCCchH
Confidence 55433 3457777887777776443 4566653
No 159
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=29.80 E-value=2.4e+02 Score=21.37 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=27.6
Q ss_pred ccccHHHHHHHHhhc--cCC-CCHHHHHHHHHHhHHcCcc
Q 021452 247 HQMKLDVIVKALKWL--EMD-MDVDEVECIVAILIHKNLV 283 (312)
Q Consensus 247 ~~I~l~~i~~al~~~--~~~-~~~~evE~ila~LI~~G~I 283 (312)
-....+.+...|.-. +.. .+.|-+...|++||.+|.|
T Consensus 28 ~~at~E~l~~~L~~~yp~i~~Ps~e~l~~~L~~Li~erkI 67 (80)
T PF10264_consen 28 QPATQETLREHLRKHYPGIAIPSQEVLYNTLGTLIKERKI 67 (80)
T ss_pred CcchHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHcCce
Confidence 346677777776543 222 4789999999999999998
No 160
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=29.63 E-value=1e+02 Score=27.91 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+.+..++...|+.+.++.+++...... |. .. .+....|..++.-+++++|..+|..+.+.-|.+.
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~------~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAA-PD------DP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH--HT------SC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-cC------HH--HHHHHHHHHhcccccccccccccccccccccccc
Confidence 4445556667777776666666655431 11 11 2455668888888999999999999888666443
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=29.62 E-value=3.2e+02 Score=23.36 Aligned_cols=86 Identities=8% Similarity=-0.090 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 69 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 69 ~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.++|-++.. ....|+++-++.+++.+-.-+ |. ...|.|=+|.++=..++|.+|-..+..|+..-|.+
T Consensus 36 ~~lY~~A~~----ly~~G~l~~A~~~f~~L~~~D-p~--------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 36 NTLYRYAMQ----LMEVKEFAGAARLFQLLTIYD-AW--------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHHHHHHH----HHHCCCHHHHHHHHHHHHHhC-cc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 344555544 357899999999999766421 11 23677778888889999999999999999976654
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCC
Q 021452 149 SEANIRMILKYLIPVKLSIGILPK 172 (312)
Q Consensus 149 ~~~nk~~IL~yLIpv~Ll~G~~P~ 172 (312)
... .-++-.|.|.+|+.+.
T Consensus 103 p~~-----~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 103 PQA-----PWAAAECYLACDNVCY 121 (157)
T ss_pred chH-----HHHHHHHHHHcCCHHH
Confidence 421 2345556666776654
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=28.78 E-value=3.3e+02 Score=22.43 Aligned_cols=68 Identities=13% Similarity=-0.020 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
.....+...|+..++++.+-..++. +... |. ..+...-++.+|.++...+++++|...+..|+..-|.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~-----~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLE--ID-----PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cc-----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3344456788999999998877653 3321 21 1123345678999999999999999999999986443
No 163
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=28.69 E-value=1.2e+02 Score=33.67 Aligned_cols=57 Identities=11% Similarity=-0.043 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCCc
Q 021452 112 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKD 173 (312)
Q Consensus 112 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~ 173 (312)
.-++.|+|-.|+.+..+|||.+|+..|..|++.-|.+... ...|.-.-+-.|+.+.-
T Consensus 41 ~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~-----~~~LA~~yl~~g~~~~A 97 (987)
T PRK09782 41 HFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPL-----TLYLAEAYRHFGHDDRA 97 (987)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHCCCHHHH
Confidence 4467788889999999999999999999999987765321 23333333445766543
No 164
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=28.21 E-value=1.6e+02 Score=19.93 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=30.9
Q ss_pred cccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeC
Q 021452 248 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 290 (312)
Q Consensus 248 ~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~ 290 (312)
.++..+++..+. ++..-+-.++..|+.+|+|.=.-+..
T Consensus 21 ~~t~~~la~~l~-----~~~~~vs~~v~~L~~~Glv~r~~~~~ 58 (62)
T PF12802_consen 21 ELTQSELAERLG-----ISKSTVSRIVKRLEKKGLVERERDPG 58 (62)
T ss_dssp GEEHHHHHHHHT-----S-HHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEeCCCC
Confidence 489999999988 57889999999999999997655443
No 165
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=28.02 E-value=1e+02 Score=22.07 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=29.0
Q ss_pred cccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceE
Q 021452 248 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 285 (312)
Q Consensus 248 ~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG 285 (312)
.++..+++.++. ++..+|.-+|.+|..+|+|.-
T Consensus 22 ~~ta~eLa~~lg-----l~~~~v~r~L~~L~~~G~V~~ 54 (68)
T smart00550 22 TSTALQLAKNLG-----LPKKEVNRVLYSLEKKGKVCK 54 (68)
T ss_pred CcCHHHHHHHHC-----CCHHHHHHHHHHHHHCCCEEe
Confidence 389999999988 678899999999999999853
No 166
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=27.82 E-value=2.1e+02 Score=31.10 Aligned_cols=64 Identities=13% Similarity=0.050 Sum_probs=48.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.+-..|...++++.+-+++..+-+. | ..+..-+.|-.|++++..+.|++|.+.+..++..-|.+
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~--~------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNR--E------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcC--c------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 3456677888888888887766653 2 23334456679999999999999999999999977743
No 167
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=27.44 E-value=1.9e+02 Score=22.01 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc-chHHHHHHHHHH
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ-SEANIRMILKYL 160 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~-~~~nk~~IL~yL 160 (312)
.-+|-++..++..|+|++|.+.|-..++.-+.. ...-|+..+..+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 567899999999999999999999999975533 223445544433
No 168
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=27.30 E-value=60 Score=24.74 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHhHHcCcceEEEe
Q 021452 265 MDVDEVECIVAILIHKNLVKGYFA 288 (312)
Q Consensus 265 ~~~~evE~ila~LI~~G~IkGyIs 288 (312)
...+....++..|.++|+|+|.--
T Consensus 22 ~~~~~~~~il~~L~d~GyI~G~~~ 45 (88)
T PF09639_consen 22 ITDSYWSDILRMLQDEGYIKGVSV 45 (88)
T ss_dssp S-HHHHHHHHHHHHHHTSEE--EE
T ss_pred hhHHHHHHHHHHHHHCCCccceEE
Confidence 445788899999999999999543
No 169
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=26.95 E-value=1.7e+02 Score=19.43 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=26.9
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHchHHHHHhcH
Q 021452 184 YSNIVQALRRGDLRLLRHALEEHEDQFLRSGV 215 (312)
Q Consensus 184 y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~gl 215 (312)
...+.+++..||+..--++++.+...+.+++-
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~ 36 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS 36 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC
Confidence 35688999999999999999998887777654
No 170
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=26.73 E-value=7.5e+02 Score=25.79 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
.+..|.++..|.+.|+++.+..++..+.. | +.++|.. +-..++..+++++|.+.|.+....
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~--------~~~t~n~-li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPE---R--------NLASWGT-IIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCCC---C--------CeeeHHH-HHHHHHHCcCHHHHHHHHHHHHHh
Confidence 46789999999999999999999986653 2 2344432 334467779999999999988764
No 171
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=26.71 E-value=5.2e+02 Score=23.96 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchH
Q 021452 115 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 151 (312)
Q Consensus 115 v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 151 (312)
+..+|=.|.-.+..|+|.+|...|.......|-+...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~ 70 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS 70 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 4567889999999999999999999888877754433
No 172
>PF05158 RNA_pol_Rpc34: RNA polymerase Rpc34 subunit; InterPro: IPR007832 The family comprises a subunit specific to RNA Pol III, the tRNA specific polymerase. The C34 subunit of Saccharomyces cerevisiae RNA Pol III is part of a subcomplex of three subunits which have no counterpart in the other two nuclear RNA polymerases. This subunit interacts with TFIIIB70 and therefore participates in Pol III recruitment [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2DK8_A 2DK5_A 2YU3_A.
Probab=26.68 E-value=21 Score=34.16 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhcC----CCCCchhhhhhchhchHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHH--HHHHhhHH
Q 021452 151 ANIRMILKYLIPVKLSIG----ILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVY--LVLEKLEL 224 (312)
Q Consensus 151 ~nk~~IL~yLIpv~Ll~G----~~P~~~ll~~y~l~~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~gly--lllerlr~ 224 (312)
....++||.|.-=+|+.- +.|++.+.--|++.|=.++. ...|| .+|-+ .+++.++.
T Consensus 115 ~~~~k~lk~Le~k~lIK~vksv~~~~rK~Yml~~l~Ps~eiT-----------------GG~wy-~d~e~D~efi~~l~~ 176 (327)
T PF05158_consen 115 TQLTKILKSLESKKLIKSVKSVKNPNRKVYMLYDLEPSEEIT-----------------GGPWY-TDGEFDTEFIDVLRE 176 (327)
T ss_dssp HHHHHHHHHHHHTTSEEEE--SS-SS--EEEESSS---------------------------------------------
T ss_pred HHHHHHHHHHHhCCCEEEecCcCCCCeEEEEEccCCcCcccC-----------------CCCcc-cCCcccHHHHHHHHH
Confidence 456778888887777642 35666655556665544332 23344 33433 26677888
Q ss_pred HHHHHHHHHHHHHhhc-------------CCC---CCCccccHHHHHHHHhhc---cCCCCHHHHHHHHHHhHHcCcceE
Q 021452 225 QVYQRLFKKIYIIQKQ-------------KDP---SKAHQMKLDVIVKALKWL---EMDMDVDEVECIVAILIHKNLVKG 285 (312)
Q Consensus 225 lv~r~L~kkv~~~~~~-------------~~~---~~~~~I~l~~i~~al~~~---~~~~~~~evE~ila~LI~~G~IkG 285 (312)
.|++-+-++.+....+ ..| +..+-.++.+|...+.-+ ..+++.+|++.||-.||++|.|.-
T Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~eI~~fI~~sgIs~v~Ls~eDI~~LL~tLVyDgkIE~ 256 (327)
T PF05158_consen 177 QCLRFIQQKSFPSSEQISQKTSSSSADPQALPYPAGYASYPTLEEIAEFINKSGISNVELSEEDIESLLDTLVYDGKIEE 256 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCcCccccccccccccccccccccccccccCCCCCHHHHHHHHHHcCCCceecCHHHHHHHHHHHhhCceeEE
Confidence 8887777776633210 000 111224555555554433 335789999999999999999965
Q ss_pred EEee
Q 021452 286 YFAH 289 (312)
Q Consensus 286 yIsh 289 (312)
..+.
T Consensus 257 v~~~ 260 (327)
T PF05158_consen 257 VRSG 260 (327)
T ss_dssp ----
T ss_pred Eecc
Confidence 5554
No 173
>PLN03218 maturation of RBCL 1; Provisional
Probab=26.55 E-value=9.5e+02 Score=26.98 Aligned_cols=63 Identities=14% Similarity=-0.049 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
+..|.++..|.+.|+++.+..++..+...... .+.++|.-. -..|+-.+++++|.+.|.....
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-------PdvvTynaL-I~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-------ANVHTFGAL-IDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-------CCHHHHHHH-HHHHHHCcCHHHHHHHHHHHHH
Confidence 45677777888888888888777777653221 123444333 3346677888888887776654
No 174
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=26.23 E-value=3.7e+02 Score=26.54 Aligned_cols=110 Identities=22% Similarity=0.265 Sum_probs=68.0
Q ss_pred HHHHhhHhcChHHHHHHHHHHHHhcCccc-----------------hHH-----------HHHHHHHHHHHHhhc--CCC
Q 021452 121 TGRLEVFNENFPAADQKLSYALINCNPQS-----------------EAN-----------IRMILKYLIPVKLSI--GIL 170 (312)
Q Consensus 121 ~G~~~~~~~~~~~A~~~L~~A~~~c~~~~-----------------~~n-----------k~~IL~yLIpv~Ll~--G~~ 170 (312)
.|...+.+|+|.+|+..+..+=++-+... ..| ...+..+|.-+++++ |.+
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 56777788888888888877766544211 011 123356666677765 567
Q ss_pred CCch-----hhhhhchh-chH--HHHHHHHhCCHHHHHHHHHHchHHHHHhcHHH--HHHhhHHHHHHHHHHHH
Q 021452 171 PKDW-----LLEKYNLV-EYS--NIVQALRRGDLRLLRHALEEHEDQFLRSGVYL--VLEKLELQVYQRLFKKI 234 (312)
Q Consensus 171 P~~~-----ll~~y~l~-~y~--~L~~Avk~Gnl~~f~~~l~~~~~~f~~~glyl--llerlr~lv~r~L~kkv 234 (312)
|... +++.-+.. .-. ..-..+++|+.......+.+ +.|.|++. -..+++.-.++++++..
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~----L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK----LRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH----HHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 7632 12222211 112 22346789999988888876 66777764 56788888888887764
No 175
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=26.18 E-value=1.5e+02 Score=18.74 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=27.0
Q ss_pred cccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcce
Q 021452 248 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 248 ~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~Ik 284 (312)
.++..+++..+. ++...+.-.+..|..+|+|.
T Consensus 8 ~~s~~~la~~l~-----~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLG-----LTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHC-----CCHHHHHHHHHHHHHCCCEE
Confidence 367778888877 57888999999999999996
No 176
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=25.89 E-value=1.5e+02 Score=21.91 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=34.1
Q ss_pred ccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEcc
Q 021452 249 MKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 298 (312)
Q Consensus 249 I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK 298 (312)
++..+++..++ ++...++.++..|...|+|+..=-. ++-..+++
T Consensus 26 ~s~~eiA~~~~-----i~~~~l~kil~~L~~~Gli~s~~G~-~GGy~L~~ 69 (83)
T PF02082_consen 26 VSSKEIAERLG-----ISPSYLRKILQKLKKAGLIESSRGR-GGGYRLAR 69 (83)
T ss_dssp BEHHHHHHHHT-----S-HHHHHHHHHHHHHTTSEEEETST-TSEEEESS
T ss_pred CCHHHHHHHHC-----cCHHHHHHHHHHHhhCCeeEecCCC-CCceeecC
Confidence 99999999988 6899999999999999999754322 34455655
No 177
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=25.85 E-value=1.5e+02 Score=20.21 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=29.4
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcce
Q 021452 246 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 246 ~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~Ik 284 (312)
...++.++++..+. ++...+.-++..|..+|+|.
T Consensus 23 ~~~~s~~ela~~~g-----~s~~tv~r~l~~L~~~g~i~ 56 (67)
T cd00092 23 QLPLTRQEIADYLG-----LTRETVSRTLKELEEEGLIS 56 (67)
T ss_pred cCCcCHHHHHHHHC-----CCHHHHHHHHHHHHHCCCEE
Confidence 35688899998887 68899999999999999996
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=25.60 E-value=76 Score=32.38 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=39.8
Q ss_pred hcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 84 KLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 84 kl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
..|+++.+..-++ +++-. | + ...+++.|+++...|++++|.++++.|++.-|.
T Consensus 432 ~~g~~~~A~~~l~rAl~L~--------p-s--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLE--------M-S--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcCCHHHHHHHHHHHHHcC--------C-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3477887776554 34321 2 1 346788999999999999999999999997664
No 179
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=25.60 E-value=3e+02 Score=20.92 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHhHHcCcc
Q 021452 264 DMDVDEVECIVAILIHKNLV 283 (312)
Q Consensus 264 ~~~~~evE~ila~LI~~G~I 283 (312)
+.+.++++.++-.||.+|+|
T Consensus 53 ~~~~~~~~~li~~Li~~g~L 72 (106)
T PF09382_consen 53 DMSKDDWERLIRQLILEGYL 72 (106)
T ss_dssp TS-HHHHHHHHHHHHHTTSE
T ss_pred cCCHHHHHHHHHHHHHcCCc
Confidence 47999999999999999999
No 180
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.59 E-value=4e+02 Score=30.26 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=43.4
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH--hhcCCCCCchh
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVK--LSIGILPKDWL 175 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~--Ll~G~~P~~~l 175 (312)
-+||+|+.|+..++-.+|-++|..|..---+. ...++..+.+.|.+ +.-|+.|+.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~--~aL~~lv~~~~p~~~sv~dG~t~s~e~ 980 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEG--NALRKLVYFLLPKRFSVADGKTPSEEL 980 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccH--HHHHHHHHHhcCCCCchhcCCCCCchH
Confidence 46889999999999999999999998854432 24555556666754 34699998876
No 181
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=25.11 E-value=1.5e+02 Score=25.19 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=24.5
Q ss_pred HHHHhhHhc-ChHHHHHHHHHHHHhcCcc
Q 021452 121 TGRLEVFNE-NFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 121 ~G~~~~~~~-~~~~A~~~L~~A~~~c~~~ 148 (312)
+|.-.+.++ ++.+|-.||..|+.-||..
T Consensus 96 ~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 96 LGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 666777888 9999999999999999963
No 182
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=24.81 E-value=1.9e+02 Score=26.86 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHH-HHHHHhhccCCCCCCCCCchhhHHHHHHHH
Q 021452 44 PEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCR-SVIRSIETARIFDFEEFPKRDKVTYMYYTG 122 (312)
Q Consensus 44 ~~~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~-~lik~i~~~~~p~~~~~~~~~~v~y~YY~G 122 (312)
+.++..+.+-.+++ +|.|-. ...|+ -|- .-.|+|++++++|. .-.++++- .| ..|.=+|++|
T Consensus 23 ~k~y~~ai~~y~ra--I~~nP~---~~~Y~-tnr-alchlk~~~~~~v~~dcrralql--~~--------N~vk~h~flg 85 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRA--ICINPT---VASYY-TNR-ALCHLKLKHWEPVEEDCRRALQL--DP--------NLVKAHYFLG 85 (284)
T ss_pred hhhhchHHHHHHHH--HhcCCC---cchhh-hhH-HHHHHHhhhhhhhhhhHHHHHhc--Ch--------HHHHHHHHHH
Confidence 55666666655554 456552 22333 232 23688999999887 45555552 12 2356789999
Q ss_pred HHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 123 RLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 123 ~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
...+....|.+|-.+|+.|+.....
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhc
Confidence 9999999999999999999775443
No 183
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=24.66 E-value=6.6e+02 Score=24.49 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 112 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 112 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
-+...|+.=++.-++..+++++|.+.|..|+.--|+
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 445556556888889999999999999999985443
No 184
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=24.55 E-value=1.7e+02 Score=20.15 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=23.6
Q ss_pred HHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 122 GRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 122 G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+|+.+++|++|.+.++.++..-|.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 29 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP 29 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc
Confidence 4678999999999999999999766543
No 185
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.69 E-value=1.9e+02 Score=20.79 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=19.8
Q ss_pred HHHHHHhCCHHHHHHHHHHchHH
Q 021452 187 IVQALRRGDLRLLRHALEEHEDQ 209 (312)
Q Consensus 187 L~~Avk~Gnl~~f~~~l~~~~~~ 209 (312)
+++|+.+||+..|.+.+..+...
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~ 23 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQEN 23 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhh
Confidence 47899999999999999987653
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=23.62 E-value=4.7e+02 Score=23.58 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
-+-+.-|.++.+.+|.+.+..+-.. .|.+ +.|..+ --.||.+--.|.+.+|+..|++|..++|.
T Consensus 129 glA~Aqfa~~~~A~a~~tLe~l~e~-~pa~-r~pd~~-----Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 129 GLAQAQFAIQEFAAAQQTLEDLMEY-NPAF-RSPDGH-----LLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhhc-CCcc-CCCCch-----HHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 3455667899999999888665442 1332 233332 33589999999999999999999998774
No 187
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=23.09 E-value=2.9e+02 Score=19.72 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=24.1
Q ss_pred ccccHHHHHHHHhhc---cCCCCHHHHHHHHHHhHHcCcce
Q 021452 247 HQMKLDVIVKALKWL---EMDMDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 247 ~~I~l~~i~~al~~~---~~~~~~~evE~ila~LI~~G~Ik 284 (312)
.+++.+++.....-. ....+..++.--+-.||.+|||+
T Consensus 21 k~~~~~~L~~~v~~~l~~~f~~~~~~ik~~Ie~LIekeyi~ 61 (68)
T PF10557_consen 21 KKLSHDELINEVIEELKKRFPPSVSDIKKRIESLIEKEYIE 61 (68)
T ss_dssp SEEEHHHHHHHHHHHTTTTS---HHHHHHHHHHHHHTTSEE
T ss_pred CceeHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhhhhh
Confidence 346666665443211 12368889999999999999985
No 188
>PLN03077 Protein ECB2; Provisional
Probab=22.76 E-value=9.6e+02 Score=25.69 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+.|.++..|.|.|+++.+..+++.+... +.++|.- +..-+...+++.+|.+.|.+......++
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----------d~vs~~~-mi~~~~~~g~~~eA~~lf~~m~~~~~pd 488 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPEK-----------DVISWTS-IIAGLRLNNRCFEALIFFRQMLLTLKPN 488 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-----------CeeeHHH-HHHHHHHCCCHHHHHHHHHHHHhCCCCC
Confidence 457789999999999999999999876542 2234432 2334678899999999999988754443
No 189
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=22.51 E-value=1.9e+02 Score=29.07 Aligned_cols=38 Identities=11% Similarity=-0.129 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 112 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 112 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+....++..|..++..++|++|..+++.|+...|.+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 44567788999999999999999999999999988754
No 190
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=22.50 E-value=2.4e+02 Score=22.75 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=27.4
Q ss_pred chHHHHHHHHhCCHHHHHHHHHHchHHHHHhcH
Q 021452 183 EYSNIVQALRRGDLRLLRHALEEHEDQFLRSGV 215 (312)
Q Consensus 183 ~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~gl 215 (312)
....+.+++++||+..=-++++++...+.+.+-
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~ 36 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNS 36 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC
Confidence 356789999999999999999998887777653
No 191
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=22.46 E-value=2.2e+02 Score=22.35 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcc
Q 021452 225 QVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLV 283 (312)
Q Consensus 225 lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~I 283 (312)
-|+.-.+|++|-+. .+..+|+.+.|..... .+.+.|...+-.||..|.|
T Consensus 36 ki~~ai~RkTyG~n-----Kk~d~Is~sq~~e~tg-----~~~~~V~~al~~Li~~~vI 84 (100)
T PF04492_consen 36 KILLAIIRKTYGWN-----KKMDRISNSQIAEMTG-----LSRDHVSKALNELIRRGVI 84 (100)
T ss_pred HHHHHHHHHccCCC-----CccceeeHHHHHHHHC-----cCHHHHHHHHHHHHHCCCE
Confidence 44445667776654 3457899999988766 5788999999999999999
No 192
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=22.19 E-value=1e+03 Score=25.86 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhHhcChHHH-------HHHHHHHHHhcCccchHHHHH--------------HHHHHHHHHhhcCCCCCch
Q 021452 116 TYMYYTGRLEVFNENFPAA-------DQKLSYALINCNPQSEANIRM--------------ILKYLIPVKLSIGILPKDW 174 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A-------~~~L~~A~~~c~~~~~~nk~~--------------IL~yLIpv~Ll~G~~P~~~ 174 (312)
-|.|..|.+.=++.+|+++ ++.|..||....+-+....|+ =|..|+=|-=.+|.+|...
T Consensus 386 d~s~L~~lL~di~~~W~~~~qL~~e~E~~LaDs~s~F~e~~l~~~r~hRd~Fpa~n~~s~~rle~LlkClg~L~~~~~~~ 465 (1103)
T KOG1328|consen 386 DFSLLYKLLQDIIDKWQPLTQLDKEEEDMLADSFSSFDEYCLRMMREHRDKFPASNRNSGERLESLLKCLGALRESPFYQ 465 (1103)
T ss_pred CHHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHhcCcchH
Confidence 4667777777666666544 466666666332211111100 0333333322334454432
Q ss_pred hhhhhchhchHHHHHHHHhCCHHHHHHHHHHchH------HHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 021452 175 LLEKYNLVEYSNIVQALRRGDLRLLRHALEEHED------QFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQ 248 (312)
Q Consensus 175 ll~~y~l~~y~~L~~Avk~Gnl~~f~~~l~~~~~------~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~ 248 (312)
-.-.|+-.--.++..|++.|+..-.++.++.-++ ...-..++.- +..+..+|-.||+.+..+. ..+
T Consensus 466 ~~cPf~~~~~~~~~~al~kg~~~w~dr~~~~~q~~~~p~l~~~~~~i~~d-~q~~~~~Yaalf~~v~~id-------yf~ 537 (1103)
T KOG1328|consen 466 KYCPFKRPFHAHLESALVKGAEDWIDRSIESVQDPDPPKLLLQLLNIVND-QQSRFLHYAALFREVARID-------YFQ 537 (1103)
T ss_pred hhCCCCccchHHHHHHHHhhhHHHHHHHHhccCCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHhhccc-------eee
Confidence 1111222123789999999999999999987543 1111222221 4577888888998876553 356
Q ss_pred ccHHHHHHH
Q 021452 249 MKLDVIVKA 257 (312)
Q Consensus 249 I~l~~i~~a 257 (312)
|.+..+-.-
T Consensus 538 lt~~q~drl 546 (1103)
T KOG1328|consen 538 LTLNQFDRL 546 (1103)
T ss_pred eeHHHHHHH
Confidence 666655433
No 193
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=22.19 E-value=1.7e+02 Score=21.68 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 114 KVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 114 ~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
.++-++--|+.++-++|+..|..++..|.-
T Consensus 34 mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~G 63 (75)
T PF04010_consen 34 MAESYLEDGKYFLEKGDYVNALACFSYAHG 63 (75)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445566789999999999999999999875
No 194
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.12 E-value=3.7e+02 Score=20.60 Aligned_cols=93 Identities=16% Similarity=0.232 Sum_probs=54.1
Q ss_pred hHHHHHHHHhCCHHHHHHHHHH-----chHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 021452 184 YSNIVQALRRGDLRLLRHALEE-----HEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKAL 258 (312)
Q Consensus 184 y~~L~~Avk~Gnl~~f~~~l~~-----~~~~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al 258 (312)
+.-|..++.+||....-+.+.+ +...++..-+...+++ .-..|..+-.+..... +...++-.+|+.|+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~--~~~~r~~~~~Ll~~L~-----~~~~~~~~~~~~gf 78 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEE--KKSYREYYSKLLSHLC-----KRKLISKEQFQEGF 78 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTS--SHHHHHHHHHHHHHHH-----HTTSS-HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHH-----hcCCCCHHHHHHHH
Confidence 3446677888999888888877 2334555555555544 1233333333322110 13568888888887
Q ss_pred hhccC---C------CCHHHHHHHHHHhHHcCcc
Q 021452 259 KWLEM---D------MDVDEVECIVAILIHKNLV 283 (312)
Q Consensus 259 ~~~~~---~------~~~~evE~ila~LI~~G~I 283 (312)
.-.-. | --.+-+..+++.+|.+|.+
T Consensus 79 ~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~l 112 (113)
T PF02847_consen 79 EDLLESLEDLELDIPKAPEYLAKFLARLIADGIL 112 (113)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS
T ss_pred HHHHhHhhhccccchHHHHHHHHHHHHHHHcCCc
Confidence 63210 1 1256788899999999876
No 195
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=21.29 E-value=96 Score=28.52 Aligned_cols=59 Identities=22% Similarity=0.156 Sum_probs=39.7
Q ss_pred HHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 82 YFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 82 Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
|=.+|-..++++=+..-=+ ..|+ +--.| =|+|.++...++|+.|.+.|+.-|+.-|...
T Consensus 75 YDSlGL~~LAR~DftQaLa-------i~P~-m~~vf-NyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 75 YDSLGLRALARNDFSQALA-------IRPD-MPEVF-NYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh-------cCCC-cHHHH-HHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 5566777788765442111 1121 11123 4689999999999999999999999777544
No 196
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=21.26 E-value=1.7e+02 Score=16.32 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=16.4
Q ss_pred cChHHHHHHHHHHHHhcCc
Q 021452 129 ENFPAADQKLSYALINCNP 147 (312)
Q Consensus 129 ~~~~~A~~~L~~A~~~c~~ 147 (312)
++++.|..-++.|...||.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~ 19 (33)
T smart00386 1 GDIERARKIYERALEKFPK 19 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC
Confidence 4678999999999999983
No 197
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=21.05 E-value=4.1e+02 Score=24.39 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=43.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
......++++.+.....+...+... + ...+|.+..++.++++++|...++.|+..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~-------~-----~~~~~~al~~l~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDS-------P-----EYSFYRALLALRQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCC-------h-----hHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4556788999999888877555321 1 67789999999999999999999988884
No 198
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=21.04 E-value=6.2e+02 Score=26.47 Aligned_cols=29 Identities=10% Similarity=-0.067 Sum_probs=15.9
Q ss_pred HHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 118 MYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 118 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
+++.|..+...++|++|.++|..+....|
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 34455555555555555555555555444
No 199
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=20.93 E-value=2.5e+02 Score=29.53 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
-++|-.|++++.-.|.+.|.++|..|++.-|.
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 36789999999999999999999999996443
No 200
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=20.55 E-value=1.7e+02 Score=19.72 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=32.0
Q ss_pred cccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCC
Q 021452 248 QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 291 (312)
Q Consensus 248 ~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~ 291 (312)
.++..+++..+. ++..-+-.++.+|+.+|+|.=.-+..+
T Consensus 17 ~~~~~~la~~~~-----~~~~~~t~~i~~L~~~g~I~r~~~~~D 55 (59)
T PF01047_consen 17 GITQSELAEKLG-----ISRSTVTRIIKRLEKKGLIERERDPDD 55 (59)
T ss_dssp SEEHHHHHHHHT-----S-HHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCCHHHHHHHHC-----CChhHHHHHHHHHHHCCCEEeccCCCC
Confidence 488999999988 578889999999999999977666554
No 201
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.34 E-value=3.2e+02 Score=28.72 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIR 96 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik 96 (312)
+...+-++|++++..+.+=.+++
T Consensus 525 i~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 525 ILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred HHhhhhHHHHHhhhhhHHHHHHH
Confidence 55667788888888888877664
No 202
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=20.30 E-value=4.9e+02 Score=25.65 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
=+++-.+++.+-..++++.|.+++..+...+ |. -.+.++++++..++-.+|-+.++.|++..|.+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~-pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d 233 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD-PE-----------VAVLLARVYLLMNEEVEAIRLLNEALKENPQD 233 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC-Cc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 4577777888888889999999999888642 32 23557888888888899999999999887765
No 203
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=20.03 E-value=3.4e+02 Score=20.08 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=34.9
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHhcCChh-hHHHHHHHhhcc-CCCCCCC----CCchhhHHHH
Q 021452 60 VLAGKGSKRVGALYLTCQLFKIYFKLGTVH-LCRSVIRSIETA-RIFDFEE----FPKRDKVTYM 118 (312)
Q Consensus 60 ~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~-l~~~lik~i~~~-~~p~~~~----~~~~~~v~y~ 118 (312)
....|++.|...|-. ++.|++..+.- +...+=+.|++. .+|.++. .|-.|+|.|-
T Consensus 14 ~~ie~EaEkd~lY~~----Lr~YHqSm~lp~li~Dlk~VIN~P~R~pLfd~IR~liplkhqveyd 74 (79)
T cd07353 14 LLIDNEAEKDYLYDV----LRMYHQSMNLPVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYD 74 (79)
T ss_pred HhhccHHHHHHHHHH----HHHHHhccCHHHHHHHHHHHhCCccccchHHHHHhhccchhhhhhh
Confidence 334445566666655 89999988754 444555566653 4555543 5788888874
Done!