Query 021452
Match_columns 312
No_of_seqs 169 out of 592
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:21:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_B Nuclear mRNA export pro 100.0 9E-73 3.1E-77 554.0 26.6 293 8-308 102-442 (455)
2 3t5x_A PCI domain-containing p 100.0 3.2E-59 1.1E-63 414.6 22.6 196 107-308 6-202 (203)
3 4b4t_S RPN3, 26S proteasome re 100.0 8.3E-41 2.9E-45 329.7 20.1 229 51-299 211-447 (523)
4 3txn_A 26S proteasome regulato 99.8 1.9E-18 6.3E-23 166.7 25.0 232 47-300 115-363 (394)
5 4b4t_O 26S proteasome regulato 99.7 6.5E-16 2.2E-20 149.1 18.8 240 46-301 98-355 (393)
6 4b4t_P 26S proteasome regulato 99.6 5.7E-15 1.9E-19 144.6 19.0 237 47-299 153-405 (445)
7 4b4t_Q 26S proteasome regulato 99.5 3.1E-12 1.1E-16 120.7 21.7 234 47-298 151-401 (434)
8 4b4t_R RPN7, 26S proteasome re 99.5 2.9E-12 1E-16 124.7 21.8 227 50-300 150-394 (429)
9 4b0z_A RPN12, 26S proteasome r 98.8 1.6E-07 5.3E-12 84.0 14.5 180 79-276 14-214 (229)
10 3chm_A COP9 signalosome comple 98.3 2.3E-06 7.8E-11 73.0 9.4 95 183-299 61-157 (169)
11 1ufm_A COP9 complex subunit 4; 98.1 9.6E-06 3.3E-10 61.2 7.0 51 246-301 28-78 (84)
12 3ma5_A Tetratricopeptide repea 93.3 0.48 1.6E-05 34.8 8.5 64 76-149 11-75 (100)
13 3gw4_A Uncharacterized protein 93.0 1.1 3.9E-05 35.9 11.3 99 47-149 82-181 (203)
14 3ro3_A PINS homolog, G-protein 93.0 1.3 4.4E-05 33.5 11.0 96 48-148 26-122 (164)
15 4ga2_A E3 SUMO-protein ligase 92.7 0.69 2.3E-05 36.6 9.3 62 78-149 37-99 (150)
16 2xev_A YBGF; tetratricopeptide 92.6 0.96 3.3E-05 33.6 9.6 67 77-149 44-110 (129)
17 2lni_A Stress-induced-phosphop 92.5 2.3 8E-05 31.2 11.7 67 74-149 52-118 (133)
18 2fbn_A 70 kDa peptidylprolyl i 92.5 2.4 8.3E-05 34.5 12.8 95 46-149 53-156 (198)
19 3sz7_A HSC70 cochaperone (SGT) 92.4 2.4 8.2E-05 33.4 12.2 87 47-150 27-114 (164)
20 3k9i_A BH0479 protein; putativ 92.3 0.68 2.3E-05 34.6 8.4 69 72-149 27-95 (117)
21 2vyi_A SGTA protein; chaperone 92.2 2.5 8.4E-05 30.7 12.8 66 75-149 49-114 (131)
22 2qfc_A PLCR protein; TPR, HTH, 91.9 1.4 4.8E-05 38.6 11.1 73 73-149 197-271 (293)
23 3ulq_A Response regulator aspa 91.8 1.8 6.1E-05 39.3 12.1 113 54-170 166-280 (383)
24 4gco_A Protein STI-1; structur 91.6 1.1 3.7E-05 34.5 8.9 86 47-149 29-115 (126)
25 2kc7_A BFR218_protein; tetratr 91.5 1.6 5.5E-05 31.0 9.4 64 78-150 6-70 (99)
26 2kat_A Uncharacterized protein 91.5 1.1 3.8E-05 33.1 8.7 65 75-149 22-87 (115)
27 2dba_A Smooth muscle cell asso 91.4 1.7 5.9E-05 32.7 9.9 90 47-149 44-133 (148)
28 2xev_A YBGF; tetratricopeptide 91.2 1 3.5E-05 33.5 8.3 65 78-148 8-72 (129)
29 3rkv_A Putative peptidylprolyl 91.2 1.3 4.6E-05 34.8 9.3 68 72-149 63-131 (162)
30 3q15_A PSP28, response regulat 91.2 2.3 7.9E-05 38.5 12.2 99 68-171 178-278 (378)
31 1qqe_A Vesicular transport pro 91.1 2.9 9.8E-05 36.7 12.4 136 69-208 114-265 (292)
32 1na3_A Designed protein CTPR2; 91.0 2.5 8.6E-05 29.0 9.8 65 75-149 12-77 (91)
33 2l6j_A TPR repeat-containing p 91.0 2.8 9.6E-05 29.9 10.4 63 76-148 8-71 (111)
34 3ro3_A PINS homolog, G-protein 90.9 1.9 6.4E-05 32.5 9.7 95 48-147 66-161 (164)
35 3hym_B Cell division cycle pro 90.9 4 0.00014 35.1 13.0 76 73-149 194-270 (330)
36 1elw_A TPR1-domain of HOP; HOP 90.9 2.9 0.0001 29.7 10.3 87 47-149 20-106 (118)
37 2vgx_A Chaperone SYCD; alterna 90.8 1.7 6E-05 34.2 9.7 64 76-148 59-122 (148)
38 3uq3_A Heat shock protein STI1 90.7 5.6 0.00019 32.7 13.2 100 48-148 55-172 (258)
39 3gyz_A Chaperone protein IPGC; 90.5 1.5 5.3E-05 35.2 9.2 64 77-150 75-139 (151)
40 3q49_B STIP1 homology and U bo 90.5 1.6 5.4E-05 32.8 8.9 65 74-147 45-109 (137)
41 2xcb_A PCRH, regulatory protei 90.5 1.5 5E-05 33.9 8.9 63 77-148 57-119 (142)
42 3u3w_A Transcriptional activat 90.2 2.2 7.4E-05 37.4 10.6 76 69-148 152-229 (293)
43 3upv_A Heat shock protein STI1 89.7 3.8 0.00013 30.4 10.4 82 47-145 20-102 (126)
44 3gw4_A Uncharacterized protein 89.6 6.6 0.00023 31.2 13.7 95 48-147 43-139 (203)
45 2kck_A TPR repeat; tetratricop 89.6 1.4 4.9E-05 31.2 7.5 66 76-148 44-110 (112)
46 1hh8_A P67PHOX, NCF-2, neutrop 89.5 2.6 8.9E-05 34.2 10.1 80 75-155 74-161 (213)
47 2kck_A TPR repeat; tetratricop 89.3 2.3 7.8E-05 30.1 8.5 62 77-147 11-72 (112)
48 2qfc_A PLCR protein; TPR, HTH, 89.3 3.2 0.00011 36.2 11.0 75 68-146 151-227 (293)
49 3sf4_A G-protein-signaling mod 88.9 3.7 0.00013 36.5 11.3 70 73-146 268-338 (406)
50 1elr_A TPR2A-domain of HOP; HO 88.8 5.2 0.00018 28.9 11.1 92 47-147 20-111 (131)
51 3q15_A PSP28, response regulat 88.7 2.5 8.4E-05 38.4 10.1 115 49-170 33-157 (378)
52 1elw_A TPR1-domain of HOP; HOP 88.6 4.9 0.00017 28.4 10.3 64 76-148 8-71 (118)
53 3q49_B STIP1 homology and U bo 88.6 3.9 0.00013 30.5 9.8 64 76-148 13-76 (137)
54 2xcb_A PCRH, regulatory protei 88.4 4.2 0.00014 31.2 10.1 64 77-149 23-86 (142)
55 2ifu_A Gamma-SNAP; membrane fu 88.3 11 0.00039 33.0 14.1 131 70-206 114-257 (307)
56 4gco_A Protein STI-1; structur 88.2 2.7 9.4E-05 32.1 8.7 63 77-149 18-81 (126)
57 2fo7_A Synthetic consensus TPR 88.1 2.2 7.5E-05 30.9 7.8 61 78-147 41-101 (136)
58 2lni_A Stress-induced-phosphop 88.1 4.6 0.00016 29.4 9.8 64 76-148 20-83 (133)
59 3as5_A MAMA; tetratricopeptide 88.0 7.5 0.00026 29.8 12.3 64 76-148 46-109 (186)
60 3sz7_A HSC70 cochaperone (SGT) 87.7 4.1 0.00014 31.9 9.8 64 75-148 14-78 (164)
61 3u3w_A Transcriptional activat 87.7 3.8 0.00013 35.8 10.4 76 68-147 192-269 (293)
62 2vgx_A Chaperone SYCD; alterna 87.7 4.8 0.00016 31.6 10.1 66 75-149 24-89 (148)
63 3vtx_A MAMA; tetratricopeptide 87.6 1.5 5.2E-05 34.9 7.1 29 117-145 143-171 (184)
64 3ieg_A DNAJ homolog subfamily 87.4 6.6 0.00022 34.0 11.8 69 72-149 272-340 (359)
65 3sf4_A G-protein-signaling mod 87.2 6.1 0.00021 35.0 11.7 120 47-172 163-285 (406)
66 3qky_A Outer membrane assembly 87.2 2.2 7.6E-05 36.3 8.4 66 78-149 21-86 (261)
67 3nf1_A KLC 1, kinesin light ch 87.2 4.7 0.00016 34.3 10.5 76 69-147 150-227 (311)
68 3qww_A SET and MYND domain-con 87.1 5.4 0.00018 38.1 11.8 93 47-143 314-410 (433)
69 3u4t_A TPR repeat-containing p 87.1 12 0.00041 31.2 13.0 90 47-149 19-108 (272)
70 3ulq_A Response regulator aspa 87.0 10 0.00034 34.1 13.2 97 48-149 201-298 (383)
71 2ho1_A Type 4 fimbrial biogene 87.0 10 0.00034 31.3 12.3 89 47-149 87-175 (252)
72 1a17_A Serine/threonine protei 87.0 8.5 0.00029 29.3 12.5 66 75-149 50-115 (166)
73 3nf1_A KLC 1, kinesin light ch 87.0 4.7 0.00016 34.2 10.4 100 48-147 170-310 (311)
74 3ro2_A PINS homolog, G-protein 87.0 5 0.00017 34.2 10.6 120 47-172 159-281 (338)
75 1qqe_A Vesicular transport pro 87.0 7.1 0.00024 34.1 11.8 78 70-149 156-233 (292)
76 2q7f_A YRRB protein; TPR, prot 86.9 11 0.00036 30.7 12.3 66 75-149 94-159 (243)
77 4a1s_A PINS, partner of inscut 86.9 4.9 0.00017 36.2 10.9 121 47-172 199-321 (411)
78 3ro2_A PINS homolog, G-protein 86.7 3 0.0001 35.6 9.0 118 47-170 199-319 (338)
79 4i17_A Hypothetical protein; T 86.4 3.1 0.00011 34.4 8.7 72 74-147 78-149 (228)
80 2dba_A Smooth muscle cell asso 86.4 7.8 0.00027 28.8 10.4 70 73-148 29-98 (148)
81 3upv_A Heat shock protein STI1 86.4 5.9 0.0002 29.3 9.6 62 77-148 9-71 (126)
82 2e2e_A Formate-dependent nitri 86.3 7.7 0.00026 30.5 10.7 63 78-149 84-149 (177)
83 2yhc_A BAMD, UPF0169 lipoprote 86.3 12 0.00041 31.0 12.5 65 84-149 108-181 (225)
84 3gyz_A Chaperone protein IPGC; 86.2 6.1 0.00021 31.5 10.0 64 77-149 41-104 (151)
85 1na0_A Designed protein CTPR3; 85.9 7.5 0.00026 27.6 9.9 64 76-148 13-76 (125)
86 1na0_A Designed protein CTPR3; 85.9 7.5 0.00026 27.6 12.5 67 74-149 45-111 (125)
87 4a1s_A PINS, partner of inscut 85.9 5.5 0.00019 35.8 10.7 61 112-172 220-281 (411)
88 4b4t_Q 26S proteasome regulato 85.8 5.4 0.00019 36.2 10.7 74 70-146 133-206 (434)
89 1hz4_A MALT regulatory protein 85.8 8.4 0.00029 34.3 11.8 101 68-171 89-191 (373)
90 1xnf_A Lipoprotein NLPI; TPR, 85.7 14 0.00048 30.6 13.5 92 46-149 20-111 (275)
91 3urz_A Uncharacterized protein 85.6 5.3 0.00018 33.0 9.8 66 74-149 56-122 (208)
92 2vq2_A PILW, putative fimbrial 85.5 12 0.00042 29.8 13.3 30 117-146 115-144 (225)
93 1hxi_A PEX5, peroxisome target 85.5 5.9 0.0002 29.8 9.2 63 78-149 23-85 (121)
94 2ho1_A Type 4 fimbrial biogene 85.4 14 0.00049 30.3 13.5 61 74-143 73-133 (252)
95 2xpi_A Anaphase-promoting comp 85.3 6.4 0.00022 37.4 11.4 69 72-149 516-584 (597)
96 3mv2_B Coatomer subunit epsilo 85.2 3.7 0.00013 37.7 9.1 95 70-173 134-230 (310)
97 1kt0_A FKBP51, 51 kDa FK506-bi 85.2 11 0.00039 35.5 13.0 94 46-149 283-385 (457)
98 4gcn_A Protein STI-1; structur 85.1 4.2 0.00014 30.9 8.2 62 77-148 13-75 (127)
99 1elr_A TPR2A-domain of HOP; HO 85.0 8.7 0.0003 27.6 10.2 65 75-148 7-71 (131)
100 3uq3_A Heat shock protein STI1 85.0 14 0.00049 30.1 12.3 67 73-148 140-206 (258)
101 1hh8_A P67PHOX, NCF-2, neutrop 84.8 3.7 0.00013 33.3 8.3 67 74-149 39-105 (213)
102 3edt_B KLC 2, kinesin light ch 84.7 2.8 9.7E-05 35.0 7.6 76 69-147 124-201 (283)
103 2vyi_A SGTA protein; chaperone 84.7 9 0.00031 27.4 11.2 68 72-148 12-79 (131)
104 2vq2_A PILW, putative fimbrial 84.6 6.8 0.00023 31.4 9.8 67 74-149 10-76 (225)
105 3qky_A Outer membrane assembly 84.5 7.7 0.00026 32.8 10.5 94 46-149 30-131 (261)
106 3u4t_A TPR repeat-containing p 84.2 5 0.00017 33.6 9.1 70 77-149 181-255 (272)
107 1a17_A Serine/threonine protei 84.1 9.7 0.00033 28.9 10.1 66 74-148 15-80 (166)
108 3as5_A MAMA; tetratricopeptide 84.1 8.2 0.00028 29.6 9.8 67 74-149 10-76 (186)
109 3n71_A Histone lysine methyltr 84.1 29 0.001 33.5 15.5 90 48-143 326-421 (490)
110 2fo7_A Synthetic consensus TPR 84.1 9.5 0.00033 27.3 12.0 62 77-147 6-67 (136)
111 1ihg_A Cyclophilin 40; ppiase 83.9 5.7 0.00019 36.7 10.0 70 70-149 271-341 (370)
112 4abn_A Tetratricopeptide repea 83.3 14 0.00049 34.9 12.8 94 46-148 194-291 (474)
113 3cv0_A Peroxisome targeting si 82.8 21 0.00072 30.3 13.0 87 46-148 153-239 (327)
114 3vtx_A MAMA; tetratricopeptide 82.8 2.3 8E-05 33.8 6.0 37 113-149 3-39 (184)
115 2ifu_A Gamma-SNAP; membrane fu 82.8 8.4 0.00029 33.9 10.3 77 68-149 151-228 (307)
116 1p5q_A FKBP52, FK506-binding p 82.7 6.5 0.00022 35.5 9.7 93 47-149 163-264 (336)
117 4eqf_A PEX5-related protein; a 82.6 13 0.00043 32.8 11.5 91 45-149 191-281 (365)
118 4gcn_A Protein STI-1; structur 82.4 3.9 0.00013 31.1 7.0 91 47-147 24-115 (127)
119 2v5f_A Prolyl 4-hydroxylase su 82.1 8.8 0.0003 28.2 8.7 70 77-149 10-80 (104)
120 2v5f_A Prolyl 4-hydroxylase su 82.1 1.3 4.5E-05 33.0 4.0 31 116-146 6-36 (104)
121 2q7f_A YRRB protein; TPR, prot 81.9 9.5 0.00033 31.1 9.8 67 74-149 59-125 (243)
122 4ga2_A E3 SUMO-protein ligase 81.8 2.5 8.6E-05 33.2 5.8 36 114-149 30-65 (150)
123 3edt_B KLC 2, kinesin light ch 81.4 13 0.00045 30.7 10.6 74 69-145 82-157 (283)
124 1fch_A Peroxisomal targeting s 81.1 21 0.00072 31.1 12.3 66 74-148 219-284 (368)
125 2yhc_A BAMD, UPF0169 lipoprote 81.0 5.7 0.0002 33.1 8.1 66 78-149 10-75 (225)
126 4i17_A Hypothetical protein; T 80.9 21 0.00073 29.1 13.0 86 47-149 23-110 (228)
127 3qwp_A SET and MYND domain-con 80.7 12 0.00042 35.4 11.2 74 66-143 323-399 (429)
128 3hym_B Cell division cycle pro 80.1 7.4 0.00025 33.3 8.7 67 74-149 238-304 (330)
129 3ma5_A Tetratricopeptide repea 79.9 5.1 0.00017 28.9 6.6 35 115-149 7-41 (100)
130 1na3_A Designed protein CTPR2; 79.8 5.3 0.00018 27.2 6.4 35 114-148 8-42 (91)
131 2c2l_A CHIP, carboxy terminus 79.5 4.9 0.00017 35.2 7.5 65 75-148 41-105 (281)
132 1wao_1 Serine/threonine protei 79.3 25 0.00086 33.4 13.0 87 46-149 21-108 (477)
133 3ieg_A DNAJ homolog subfamily 78.6 31 0.001 29.5 13.4 66 78-148 240-305 (359)
134 2y4t_A DNAJ homolog subfamily 77.7 17 0.00059 32.8 10.9 69 72-149 295-363 (450)
135 2pl2_A Hypothetical conserved 77.6 17 0.00059 30.0 10.1 65 76-149 9-73 (217)
136 1xnf_A Lipoprotein NLPI; TPR, 77.6 7.9 0.00027 32.3 8.0 66 75-149 80-145 (275)
137 1hxi_A PEX5, peroxisome target 77.2 5.7 0.0002 29.9 6.3 61 77-147 56-117 (121)
138 3k9i_A BH0479 protein; putativ 77.1 6.2 0.00021 29.1 6.4 37 112-148 24-60 (117)
139 1fch_A Peroxisomal targeting s 77.1 14 0.00049 32.3 9.9 64 77-149 69-132 (368)
140 3cv0_A Peroxisome targeting si 76.7 34 0.0011 28.9 13.0 65 74-147 208-272 (327)
141 4b4t_T 26S proteasome regulato 76.4 32 0.0011 30.7 11.9 185 79-282 11-226 (274)
142 1p5q_A FKBP52, FK506-binding p 76.3 27 0.00093 31.2 11.7 77 71-149 146-230 (336)
143 4eqf_A PEX5-related protein; a 75.9 14 0.00048 32.5 9.5 73 70-149 175-247 (365)
144 3fp2_A TPR repeat-containing p 75.9 19 0.00064 33.4 10.8 60 77-146 248-307 (537)
145 2y4t_A DNAJ homolog subfamily 75.7 17 0.00059 32.8 10.3 63 76-147 30-92 (450)
146 1pc2_A Mitochondria fission pr 75.5 3.5 0.00012 33.9 4.8 36 113-148 69-104 (152)
147 3mkr_A Coatomer subunit epsilo 75.0 18 0.0006 31.7 9.9 67 73-148 131-199 (291)
148 1w3b_A UDP-N-acetylglucosamine 74.8 41 0.0014 29.8 12.5 30 117-146 69-98 (388)
149 3urz_A Uncharacterized protein 74.7 16 0.00055 29.9 9.0 62 79-149 11-88 (208)
150 2xpi_A Anaphase-promoting comp 74.3 22 0.00077 33.5 11.1 74 74-149 477-550 (597)
151 2fbn_A 70 kDa peptidylprolyl i 74.3 32 0.0011 27.5 12.1 75 72-148 38-121 (198)
152 2if4_A ATFKBP42; FKBP-like, al 73.9 4.3 0.00015 36.7 5.6 65 74-148 232-297 (338)
153 2pl2_A Hypothetical conserved 73.3 22 0.00077 29.2 9.7 63 77-149 123-185 (217)
154 2gw1_A Mitochondrial precursor 73.3 16 0.00056 33.4 9.6 67 74-149 414-483 (514)
155 2e2e_A Formate-dependent nitri 72.7 22 0.00075 27.7 9.1 65 75-148 47-114 (177)
156 3rkv_A Putative peptidylprolyl 71.2 33 0.0011 26.4 9.9 76 74-149 13-97 (162)
157 2gw1_A Mitochondrial precursor 70.7 24 0.00082 32.3 10.0 66 72-147 237-302 (514)
158 1w3b_A UDP-N-acetylglucosamine 70.5 26 0.00091 31.0 10.1 63 75-147 206-269 (388)
159 2l6j_A TPR repeat-containing p 70.1 11 0.00039 26.5 6.2 34 115-148 4-37 (111)
160 2pzi_A Probable serine/threoni 69.8 17 0.00059 36.2 9.4 109 76-198 437-552 (681)
161 3fp2_A TPR repeat-containing p 69.4 22 0.00076 32.9 9.6 87 47-149 292-378 (537)
162 3ffl_A Anaphase-promoting comp 69.2 9.7 0.00033 31.8 6.1 65 79-146 27-94 (167)
163 1hz4_A MALT regulatory protein 69.1 46 0.0016 29.3 11.4 73 70-147 133-206 (373)
164 2vsy_A XCC0866; transferase, g 69.0 52 0.0018 31.4 12.4 63 76-148 61-124 (568)
165 1wi9_A Protein C20ORF116 homol 69.0 10 0.00035 27.1 5.3 48 247-299 20-67 (72)
166 2kat_A Uncharacterized protein 68.5 13 0.00043 27.0 6.3 33 116-148 20-52 (115)
167 3c18_A Nucleotidyltransferase- 68.4 54 0.0018 29.7 11.3 133 118-286 133-272 (290)
168 4g1t_A Interferon-induced prot 67.3 16 0.00053 33.5 8.0 99 48-149 68-172 (472)
169 3bee_A Putative YFRE protein; 67.3 4.2 0.00014 29.9 3.2 56 82-147 17-75 (93)
170 2c2l_A CHIP, carboxy terminus 67.0 23 0.00079 30.7 8.7 65 76-149 8-72 (281)
171 1kt0_A FKBP51, 51 kDa FK506-bi 64.9 49 0.0017 31.0 11.1 76 71-148 267-350 (457)
172 4h7y_A Dual specificity protei 64.6 59 0.002 26.8 11.8 96 45-149 33-128 (161)
173 2vsy_A XCC0866; transferase, g 63.7 35 0.0012 32.6 10.0 67 74-149 25-91 (568)
174 3ax2_A Mitochondrial import re 63.0 8.9 0.0003 27.5 4.1 29 121-149 23-51 (73)
175 4abn_A Tetratricopeptide repea 60.9 32 0.0011 32.4 9.0 65 75-149 140-213 (474)
176 2h6f_A Protein farnesyltransfe 60.7 40 0.0014 31.1 9.5 66 74-149 99-166 (382)
177 4gyw_A UDP-N-acetylglucosamine 58.5 37 0.0013 34.4 9.4 64 75-148 12-76 (723)
178 1ihg_A Cyclophilin 40; ppiase 55.5 77 0.0026 28.8 10.4 76 73-148 224-306 (370)
179 1nzn_A CGI-135 protein, fissio 54.7 17 0.00057 28.8 4.8 37 112-148 71-107 (126)
180 2h6f_A Protein farnesyltransfe 54.2 58 0.002 30.0 9.3 66 74-149 133-200 (382)
181 1om2_A Protein (mitochondrial 54.1 16 0.00053 27.6 4.3 28 121-148 26-53 (95)
182 1ouv_A Conserved hypothetical 51.7 77 0.0026 26.4 9.1 57 78-145 12-72 (273)
183 2xvc_A ESCRT-III, SSO0910; cel 51.3 20 0.00068 24.5 4.0 33 247-284 24-56 (59)
184 2kc7_A BFR218_protein; tetratr 50.7 32 0.0011 23.7 5.6 30 119-148 4-33 (99)
185 4gyw_A UDP-N-acetylglucosamine 49.6 70 0.0024 32.4 9.8 87 46-149 24-111 (723)
186 2r5s_A Uncharacterized protein 47.7 73 0.0025 24.8 7.9 32 116-147 109-140 (176)
187 4f3v_A ESX-1 secretion system 47.1 69 0.0024 28.6 8.3 57 81-144 144-200 (282)
188 4g26_A Pentatricopeptide repea 46.6 2E+02 0.0068 27.4 12.3 96 73-207 106-202 (501)
189 3mkr_A Coatomer subunit epsilo 46.5 87 0.003 27.1 8.9 55 79-147 108-162 (291)
190 3mv2_B Coatomer subunit epsilo 45.1 1.7E+02 0.0059 26.3 10.8 121 72-206 178-306 (310)
191 4g1t_A Interferon-induced prot 45.1 26 0.00087 32.0 5.3 71 74-146 53-125 (472)
192 3fbl_A Putative uncharacterize 44.6 14 0.00047 25.7 2.4 28 59-86 10-40 (82)
193 2d58_A Allograft inflammatory 44.6 35 0.0012 24.8 5.1 55 231-290 34-88 (107)
194 3i4p_A Transcriptional regulat 44.5 35 0.0012 27.4 5.4 37 245-286 14-50 (162)
195 1qgp_A Protein (double strande 44.1 29 0.00099 24.6 4.3 36 247-287 30-65 (77)
196 2r5s_A Uncharacterized protein 43.6 45 0.0015 26.1 5.9 65 75-149 43-108 (176)
197 1xn7_A Hypothetical protein YH 42.8 51 0.0017 23.5 5.4 34 247-285 15-48 (78)
198 1wao_1 Serine/threonine protei 42.6 61 0.0021 30.6 7.7 59 81-149 15-74 (477)
199 3o48_A Mitochondria fission 1 41.9 33 0.0011 27.4 4.7 38 112-149 75-112 (134)
200 2nsz_A Programmed cell death p 40.2 1.3E+02 0.0044 23.3 9.2 87 189-284 16-119 (129)
201 2if4_A ATFKBP42; FKBP-like, al 38.7 1.2E+02 0.0042 26.8 8.7 75 72-148 179-263 (338)
202 2cfx_A HTH-type transcriptiona 38.6 47 0.0016 25.9 5.2 35 247-286 18-52 (144)
203 2heo_A Z-DNA binding protein 1 38.0 42 0.0014 22.9 4.2 34 247-285 24-57 (67)
204 2qac_A Myosin A tail domain in 38.0 79 0.0027 23.7 6.4 51 232-289 87-137 (146)
205 2k02_A Ferrous iron transport 37.1 58 0.002 23.9 5.0 36 247-287 15-50 (87)
206 1ouv_A Conserved hypothetical 37.1 1.8E+02 0.006 24.0 9.5 58 75-144 113-179 (273)
207 2v79_A DNA replication protein 36.3 20 0.00068 28.5 2.6 33 247-284 50-82 (135)
208 2lhi_A Calmodulin, serine/thre 35.5 66 0.0022 25.8 5.8 54 232-291 87-140 (176)
209 2cg4_A Regulatory protein ASNC 35.5 49 0.0017 26.0 4.9 36 247-287 21-56 (152)
210 2p5v_A Transcriptional regulat 35.5 53 0.0018 26.1 5.1 36 247-287 23-58 (162)
211 2hr2_A Hypothetical protein; a 34.3 1E+02 0.0034 25.1 6.7 33 115-147 11-43 (159)
212 2kxw_B Sodium channel protein 34.2 24 0.00082 20.2 1.9 16 46-61 4-19 (27)
213 4b4t_P 26S proteasome regulato 33.7 1.4E+02 0.0048 28.1 8.6 65 75-142 140-204 (445)
214 3rjv_A Putative SEL1 repeat pr 33.3 44 0.0015 27.3 4.4 31 116-146 19-49 (212)
215 2ia0_A Putative HTH-type trans 32.8 61 0.0021 26.3 5.1 36 247-287 30-65 (171)
216 2dbb_A Putative HTH-type trans 32.6 52 0.0018 25.7 4.6 35 247-286 22-56 (151)
217 2ktg_A Calmodulin, putative; e 32.5 1E+02 0.0034 20.8 5.7 54 231-289 16-69 (85)
218 1y8m_A FIS1; mitochondria, unk 31.8 63 0.0021 26.1 4.8 36 113-148 75-110 (144)
219 3qou_A Protein YBBN; thioredox 31.4 91 0.0031 26.8 6.4 62 77-147 122-183 (287)
220 2ion_A PDCD4, programmed cell 31.3 2E+02 0.0069 23.0 9.2 87 189-284 18-121 (152)
221 1qbj_A Protein (double-strande 31.3 73 0.0025 22.8 4.7 33 247-284 26-58 (81)
222 2hgc_A YJCQ protein; SR346, st 30.4 38 0.0013 25.8 3.1 24 265-288 28-51 (102)
223 2lv7_A Calcium-binding protein 30.2 69 0.0024 23.4 4.6 43 232-277 39-81 (100)
224 3txn_A 26S proteasome regulato 30.1 3.2E+02 0.011 25.5 10.2 67 74-143 101-167 (394)
225 1klx_A Cysteine rich protein B 29.6 42 0.0014 25.7 3.4 59 78-148 63-130 (138)
226 2opo_A Polcalcin CHE A 3; calc 29.2 1.1E+02 0.0038 20.6 5.4 52 232-289 14-65 (86)
227 2pn6_A ST1022, 150AA long hypo 29.2 56 0.0019 25.5 4.2 35 247-286 16-50 (150)
228 1klx_A Cysteine rich protein B 28.8 76 0.0026 24.1 4.9 57 78-146 31-92 (138)
229 1ldd_A APC2WHB, anaphase promo 28.6 64 0.0022 23.0 3.9 38 247-284 21-64 (74)
230 3qou_A Protein YBBN; thioredox 27.7 1.2E+02 0.004 26.1 6.4 68 77-147 156-251 (287)
231 2hr2_A Hypothetical protein; a 27.6 2.4E+02 0.0082 22.7 9.7 75 70-144 9-86 (159)
232 2w25_A Probable transcriptiona 27.6 88 0.003 24.4 5.1 36 247-287 20-55 (150)
233 2b1u_A Calmodulin-like protein 27.3 1.2E+02 0.0042 19.3 5.2 44 244-289 18-61 (71)
234 2l53_B CAM, voltage-gated sodi 26.5 38 0.0013 20.1 1.9 15 46-60 4-18 (31)
235 4b4t_R RPN7, 26S proteasome re 26.4 1.5E+02 0.0052 27.6 7.4 92 47-148 110-201 (429)
236 1zu2_A Mitochondrial import re 26.3 46 0.0016 27.1 3.2 34 116-149 81-125 (158)
237 2bl0_C Myosin regulatory light 26.2 1.3E+02 0.0046 22.0 5.8 53 231-289 81-133 (142)
238 2vn2_A DNAD, chromosome replic 24.7 55 0.0019 25.3 3.3 32 249-285 52-83 (128)
239 2cyy_A Putative HTH-type trans 24.6 61 0.0021 25.4 3.6 35 247-286 20-54 (151)
240 2e1c_A Putative HTH-type trans 24.3 69 0.0024 26.0 4.0 35 247-286 40-74 (171)
241 4gq2_M Nucleoporin NUP120; bet 24.2 69 0.0024 33.5 4.8 53 78-143 816-868 (950)
242 1s6j_A CDPK, calcium-dependent 23.2 1.1E+02 0.0037 20.6 4.4 43 245-289 36-78 (87)
243 1tiz_A Calmodulin-related prot 22.6 1.5E+02 0.0051 18.5 5.9 33 245-277 14-46 (67)
244 3ly7_A Transcriptional activat 22.6 84 0.0029 29.4 4.6 54 83-147 288-342 (372)
245 4fhn_B Nucleoporin NUP120; pro 21.5 75 0.0026 33.9 4.5 53 78-143 818-870 (1139)
246 1i1g_A Transcriptional regulat 21.3 83 0.0028 24.0 3.8 35 247-286 17-51 (141)
247 3mkq_B Coatomer subunit alpha; 21.1 1.9E+02 0.0065 23.9 6.1 49 78-140 11-59 (177)
248 2ond_A Cleavage stimulation fa 20.4 3.9E+02 0.013 22.6 11.9 51 85-145 182-233 (308)
249 3rjv_A Putative SEL1 repeat pr 20.2 3.3E+02 0.011 21.7 7.6 54 79-145 25-83 (212)
250 2joj_A Centrin protein; N-term 20.2 1.7E+02 0.0058 19.0 4.8 44 231-277 9-52 (77)
No 1
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-73 Score=554.03 Aligned_cols=293 Identities=21% Similarity=0.322 Sum_probs=269.8
Q ss_pred CCCcc---chhhhHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHhhhhcCCC------C---chhHHHHH
Q 021452 8 NNCML---LQCFHSGVSELGIRLGFGSIADRELAS-NGKSPEKLKAAGSFLMKVFGVLAGKG------S---KRVGALYL 74 (312)
Q Consensus 8 ~~~~~---~~~~~~~~~~~~lr~~la~~~D~~~~~-~~~~~~~le~~~~~i~~~f~~~~~d~------s---Kk~~~~~~ 74 (312)
.-+|+ +|+++. ++..++. +|.++|++... +..+.+++|+||++|+|+|++|++|+ | ||+|+||+
T Consensus 102 ~~~wi~~l~p~~~~--~~~~l~~-~a~~lD~~~~~~~~~~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l 178 (455)
T 3t5v_B 102 NAPHIEMLIPVATR--ETEFIIN-LAGKLDSFHLQLHTRSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYL 178 (455)
T ss_dssp TCTTHHHHHHHHHH--HHHHHHH-HHHHHHHTHHHHTCCTTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHH
T ss_pred CCchHHHhHHHHHH--HHHHHHH-HHHHhhhhHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHH
Confidence 34897 999999 9999999 99999999843 33457899999999999999999983 3 99999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccC-CCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh-cCcc----
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETAR-IFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN-CNPQ---- 148 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~-~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~-c~~~---- 148 (312)
+|++||+|||+|++++|+|++++++++. +|+++.||++|+|||+||+||+++++++|.+|+++|++||++ ||.+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~ 258 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQ 258 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccch
Confidence 9999999999999999999999999864 468999999999999999999999999999999999999999 9987
Q ss_pred -chHHHHHHHHHHHHHHhhcCCCCCchhhhh---hchhc-hHHHHHHHHhCCHHHHHHHHHHchHHHHHhcH-HHHHHhh
Q 021452 149 -SEANIRMILKYLIPVKLSIGILPKDWLLEK---YNLVE-YSNIVQALRRGDLRLLRHALEEHEDQFLRSGV-YLVLEKL 222 (312)
Q Consensus 149 -~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~---y~l~~-y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~gl-ylllerl 222 (312)
+.+|+++||+||||++|++|++|++.++++ +.+.+ |.+|++|||+||+.+|++++++|+++|+++|+ |++++|+
T Consensus 259 ~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerL 338 (455)
T 3t5v_B 259 AITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKL 338 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHH
Confidence 478999999999999999999999999998 45776 99999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHH---HHHhhcCCCCCCccccHHHHHHHHhhccCC----------------CCHHHHHHHHHHhHHcCcc
Q 021452 223 ELQVYQRLFKKI---YIIQKQKDPSKAHQMKLDVIVKALKWLEMD----------------MDVDEVECIVAILIHKNLV 283 (312)
Q Consensus 223 r~lv~r~L~kkv---~~~~~~~~~~~~~~I~l~~i~~al~~~~~~----------------~~~~evE~ila~LI~~G~I 283 (312)
|.+|||||+|+| |.+. .++++||+++|+.|+++++.+ .|+||||||+|+||++|+|
T Consensus 339 r~~v~RnLirkv~~~~~~~-----~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~I 413 (455)
T 3t5v_B 339 PMVTYRNLIKTVIKSWTTE-----WGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLL 413 (455)
T ss_dssp HHHHHHHHHHHHHHHHTTT-----TCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCe
Confidence 999999999999 5543 356999999999999986432 6899999999999999999
Q ss_pred eEEEeeCCeEEEEccC----CCCCCCCCC
Q 021452 284 KGYFAHKSKVVVLSKQ----DPFPKLNGK 308 (312)
Q Consensus 284 kGyIsh~~~~lVlSK~----~pFP~~~~~ 308 (312)
||||+|+++++|+||+ +|||+++++
T Consensus 414 kGyIsh~~~~lVlSK~~~~~~pFP~l~~~ 442 (455)
T 3t5v_B 414 RANCFPQLQLCVVKKTTMIQEIVPPVNER 442 (455)
T ss_dssp CEEEETTTTEEEECCCSCGGGTSCCHHHH
T ss_pred EEEEecCCCEEEECCCCCCCCCCCChHHH
Confidence 9999999999999999 999998653
No 2
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=100.00 E-value=3.2e-59 Score=414.60 Aligned_cols=196 Identities=43% Similarity=0.844 Sum_probs=187.1
Q ss_pred CCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCCchhhhhhchhchHH
Q 021452 107 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSN 186 (312)
Q Consensus 107 ~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~y~l~~y~~ 186 (312)
+.||++|+|||+||.||+++++++|.+|+++|++||++||+++.+|+++||+||||++|++|++|+++++++|++.+|.+
T Consensus 6 ~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~~~~~y~~ 85 (203)
T 3t5x_A 6 DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAE 85 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHTTCGGGHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhCchhHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHhCCHHHHHHHHHHchHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCC-C
Q 021452 187 IVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMD-M 265 (312)
Q Consensus 187 L~~Avk~Gnl~~f~~~l~~~~~~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~-~ 265 (312)
|++||++||+.+|++++++|+++|+++|+|++++|+|.+|+||++|+||.+. +.++||+++|+.++++++.+ +
T Consensus 86 L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~------~~~rI~l~~i~~~l~~~~~~~~ 159 (203)
T 3t5x_A 86 VTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLL------KTHQLSLDAFLVALKFMQVEDV 159 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHH------CCSEEEHHHHHHHHHHTTCTTC
T ss_pred HHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhc------CCCcccHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999985 46999999999999998654 7
Q ss_pred CHHHHHHHHHHhHHcCcceEEEeeCCeEEEEccCCCCCCCCCC
Q 021452 266 DVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGK 308 (312)
Q Consensus 266 ~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~~pFP~~~~~ 308 (312)
|+|||||++|+||.+|+|||||+|+++++|+||++|||+++++
T Consensus 160 ~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pFP~l~~~ 202 (203)
T 3t5x_A 160 DIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFPPLSTV 202 (203)
T ss_dssp CHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCSSCCGGGT
T ss_pred CHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCCCCCcccc
Confidence 9999999999999999999999999999999999999999875
No 3
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-41 Score=329.68 Aligned_cols=229 Identities=16% Similarity=0.273 Sum_probs=202.3
Q ss_pred HHHHHHHhh-hhc-CCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHh
Q 021452 51 GSFLMKVFG-VLA-GKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN 128 (312)
Q Consensus 51 ~~~i~~~f~-~~~-~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~ 128 (312)
...++..++ .|+ .|. .+.-.+.|++++.|.+.|.++++..+++... +|. +..+.+|+++|+||.||+++++
T Consensus 211 r~~Ll~~~rta~lr~D~---~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~-~~~sn~q~~rY~YY~GRI~a~q 283 (523)
T 4b4t_S 211 RSTMMKFLKIASLKHDN---ETKAMLINLILRDFLNNGEVDSASDFISKLE---YPH-TDVSSSLEARYFFYLSKINAIQ 283 (523)
T ss_dssp HTHHHHHHHHCCSCSSS---CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCT-TTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCc---chhHHHHHHHHHHHHccCcHHHHHHHHhcCc---CCc-ccCCHHHHHHHHHHHHHHHHHh
Confidence 334555555 333 333 4667799999999999999999999998654 553 3468899999999999999999
Q ss_pred cChHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHHHhhcCCCCCchhhhhhc----hhchHHHHHHHHhCCHHHHHHH
Q 021452 129 ENFPAADQKLSYALINCNPQS--EANIRMILKYLIPVKLSIGILPKDWLLEKYN----LVEYSNIVQALRRGDLRLLRHA 202 (312)
Q Consensus 129 ~~~~~A~~~L~~A~~~c~~~~--~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~y~----l~~y~~L~~Avk~Gnl~~f~~~ 202 (312)
++|.+|+++|++||++||.+. .++++.++||||||+||+|.+|+..++.+|. |.+|.+|++||+.||+..|+++
T Consensus 284 ~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~ 363 (523)
T 4b4t_S 284 LDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTST 363 (523)
T ss_dssp TCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999764 5789999999999999999999999999987 5689999999999999999999
Q ss_pred HHHchHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCc
Q 021452 203 LEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNL 282 (312)
Q Consensus 203 l~~~~~~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~ 282 (312)
+++|+.+|.++|+|.+++|++..|+|+++|++...+ ++||+++|+..+++. +.+|+||++|+||.+|.
T Consensus 364 L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~Y--------srIsL~dIa~kL~L~----s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 364 ITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTY--------KKISLRDICLKLNLD----SEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCS--------SEECHHHHHHHHHHH----HSSCHHHHHHHHHHHTS
T ss_pred HHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHH--------hcccHHHHHHHhCCC----CHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999987765 899999999999974 35689999999999999
Q ss_pred ceEEEeeCCeEEEEccC
Q 021452 283 VKGYFAHKSKVVVLSKQ 299 (312)
Q Consensus 283 IkGyIsh~~~~lVlSK~ 299 (312)
|+|+|+|++++|+ ||.
T Consensus 432 I~A~Idh~~g~v~-ske 447 (523)
T 4b4t_S 432 IEAKINHEDGFIE-TTE 447 (523)
T ss_dssp SCCEECTTTCCEE-CCS
T ss_pred ceEEEecCCCEEE-eCc
Confidence 9999999999755 554
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.82 E-value=1.9e-18 Score=166.70 Aligned_cols=232 Identities=14% Similarity=0.186 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCCCCCCCchhhHHHHHHHHHH
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~--~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
..+|...+.+.-.-|...+. +.-++-+..+..++|+.++|+..++..+..-... .++ .|..-+..++.+.|++
T Consensus 115 y~~a~~~i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~----~~p~i~a~i~~~~Gi~ 189 (394)
T 3txn_A 115 YTEALALGAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY----CPPKVQGALDLQSGIL 189 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC----CCHHHHHHHHHHhhHH
Confidence 44556667777776665322 5778889999999999999999999887544331 232 2566778999999999
Q ss_pred hh-HhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCCchh-h-----hhhc---hhchHHHHHHHHhC
Q 021452 125 EV-FNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWL-L-----EKYN---LVEYSNIVQALRRG 194 (312)
Q Consensus 125 ~~-~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~l-l-----~~y~---l~~y~~L~~Avk~G 194 (312)
++ .+++|.+|...|.+||..++......+..+++|++.|+|+.+..+...- + ..|. +..+..++.|+..|
T Consensus 190 ~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~ 269 (394)
T 3txn_A 190 HAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKR 269 (394)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTT
T ss_pred HHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhC
Confidence 99 8999999999999999999887778889999999999999987554432 1 1232 34578899999999
Q ss_pred CHHHHHHHHHHchHHHHHhcHH-----HHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHH
Q 021452 195 DLRLLRHALEEHEDQFLRSGVY-----LVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDE 269 (312)
Q Consensus 195 nl~~f~~~l~~~~~~f~~~gly-----lllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~e 269 (312)
|+..|.+.++.++..|..+... .+.++++...++.+++ - .++|+++.++.+++ ++.+|
T Consensus 270 dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~----p--------YsrIsl~~iA~~l~-----ls~~e 332 (394)
T 3txn_A 270 SLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIE----P--------YSRVQVAHVAESIQ-----LPMPQ 332 (394)
T ss_dssp CHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHT----T--------CSEEEHHHHHHHHT-----CCHHH
T ss_pred CHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhH----h--------hceeeHHHHHHHHC-----cCHHH
Confidence 9999999999998766665542 2334444444444432 2 48999999999998 68999
Q ss_pred HHHHHHHhHHcCcceEEEeeCCeEEEEccCC
Q 021452 270 VECIVAILIHKNLVKGYFAHKSKVVVLSKQD 300 (312)
Q Consensus 270 vE~ila~LI~~G~IkGyIsh~~~~lVlSK~~ 300 (312)
+|..|++||.+|.|.|.|++.+++|++.+.+
T Consensus 333 vE~~L~~lI~dg~I~a~IDq~~giv~~~~~~ 363 (394)
T 3txn_A 333 VEKKLSQMILDKKFSGILDQGEGVLIVFEET 363 (394)
T ss_dssp HHHHHHHHHHTTSSCEEEETTTTEEEECCC-
T ss_pred HHHHHHHHHHCCCeeEEEcCCCCEEEECCCc
Confidence 9999999999999999999999999996654
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.5e-16 Score=149.08 Aligned_cols=240 Identities=16% Similarity=0.181 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhhhhcCCC---CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHH
Q 021452 46 KLKAAGSFLMKVFGVLAGKG---SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTG 122 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~---sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G 122 (312)
+|+.....+.+....+.+.. ....+.+++-..+.+.|++.|+...|+++++.++.. +...+..+..-...|++..|
T Consensus 98 ~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~-l~~~~~~~~~v~~~~y~~~~ 176 (393)
T 4b4t_O 98 YLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKT-LDKKDSIPLRITNSFYSTNS 176 (393)
T ss_dssp HHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-HHHSCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-hhccCCccHHHHHHHHHHHH
Confidence 44444444444444333221 123567888899999999999999999999888752 11112223333445555578
Q ss_pred HHhhHhcChHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHhhcC-CCCCch-hhhhhc---------hhchHHHHH
Q 021452 123 RLEVFNENFPAADQKLSYALINCNP--QSEANIRMILKYLIPVKLSIG-ILPKDW-LLEKYN---------LVEYSNIVQ 189 (312)
Q Consensus 123 ~~~~~~~~~~~A~~~L~~A~~~c~~--~~~~nk~~IL~yLIpv~Ll~G-~~P~~~-ll~~y~---------l~~y~~L~~ 189 (312)
.+|..+++|.+++.+...++..++. +.....+..+.|.+.+..++| .++++. ++.... ...+.++.+
T Consensus 177 ~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~ 256 (393)
T 4b4t_O 177 QYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLN 256 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHH
Confidence 8889999999999999999986663 334556666777777777765 577774 444321 223688999
Q ss_pred HHHhCCHHHHHHHHHHchHH--HHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCH
Q 021452 190 ALRRGDLRLLRHALEEHEDQ--FLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDV 267 (312)
Q Consensus 190 Avk~Gnl~~f~~~l~~~~~~--f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~ 267 (312)
++..||+..|++.++.+... ++..+.-.+++++|.+++..++.. .....||++.++.+++ ++.
T Consensus 257 ~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~----------~~~~~i~f~~ia~~l~-----i~~ 321 (393)
T 4b4t_O 257 ALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFV----------KNIRMLSFEDISKATH-----LPK 321 (393)
T ss_dssp HHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCS----------SSCCCEEHHHHHHHHT-----CCH
T ss_pred HHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhcc----------CCCCcCcHHHHHHHhC-----cCH
Confidence 99999999999988776553 555566667888998888776531 1235799999999998 689
Q ss_pred HHHHHHHHHhHHcCcceEEEeeCCeEEEEccCCC
Q 021452 268 DEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDP 301 (312)
Q Consensus 268 ~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~~p 301 (312)
+|||.+++++|..|+|+|+|++.++++.++...|
T Consensus 322 ~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~p 355 (393)
T 4b4t_O 322 DNVEHLVMRAISLGLLKGSIDQVNELVTISWVQP 355 (393)
T ss_dssp HHHHHHHHHHHHHSCSSSCEETTTTEECC-----
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccC
Confidence 9999999999999999999999999998876543
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.7e-15 Score=144.64 Aligned_cols=237 Identities=13% Similarity=0.096 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
..+|+++|...-.-|.+..+ +.--..+.....++|+..+++..++.+++.+....+.. .-+..-+..|+.|.|++++
T Consensus 153 ~~eA~~iL~~l~~Et~~~~~-~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~ 229 (445)
T 4b4t_P 153 IDEAADILCELQVETYGSME-MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISL 229 (445)
T ss_dssp HHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHH
Confidence 45566667766554433222 44556677789999999999999999998876431111 1245678999999999999
Q ss_pred HhcChHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHHHhhcCCCCCchhhh-h-h------chhchHHHHHHHHhCCHH
Q 021452 127 FNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPKDWLLE-K-Y------NLVEYSNIVQALRRGDLR 197 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIpv~Ll~G~~P~~~ll~-~-y------~l~~y~~L~~Avk~Gnl~ 197 (312)
.+++|.+|..+|..+|..+..... ..+...|++.+.+.++.+.-|.+..+. + + .+..|..+.+++.++++.
T Consensus 230 ~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~ 309 (445)
T 4b4t_P 230 HKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELM 309 (445)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSS
T ss_pred HhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHh
Confidence 999999999999999997765443 445667888888888877666654433 2 1 245699999999999999
Q ss_pred HHHHHHHHchHHHHHhcHH-------HHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHH
Q 021452 198 LLRHALEEHEDQFLRSGVY-------LVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEV 270 (312)
Q Consensus 198 ~f~~~l~~~~~~f~~~gly-------lllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~ev 270 (312)
.|..+++.++..+..+.+. ..+..++..++-.-++++...| ++|+++.++..|+ ++.+|+
T Consensus 310 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Y--------s~I~l~~la~lL~-----l~~~ev 376 (445)
T 4b4t_P 310 RWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYY--------SRITLLRLNELLD-----LTESQT 376 (445)
T ss_dssp SHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHE--------EEEEHHHHHHHHT-----SCHHHH
T ss_pred hhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHh--------ceeeHHHHHHHhC-----cCHHHH
Confidence 9999999987765554332 2233344444434445555555 8999999999998 689999
Q ss_pred HHHHHHhHHcCcceEEEeeCCeEEEEccC
Q 021452 271 ECIVAILIHKNLVKGYFAHKSKVVVLSKQ 299 (312)
Q Consensus 271 E~ila~LI~~G~IkGyIsh~~~~lVlSK~ 299 (312)
|..++.||.+|.|.|+|++..|+|++.+.
T Consensus 377 E~~ls~mI~~g~i~akIDq~~giV~F~~~ 405 (445)
T 4b4t_P 377 ETYISDLVNQGIIYAKVNRPAKIVNFEKP 405 (445)
T ss_dssp HHHHHHHHHHTSSCCEEETTTTEEEC---
T ss_pred HHHHHHHHHCCCEEEEEcCCCCEEEECCC
Confidence 99999999999999999999999998653
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.1e-12 Score=120.67 Aligned_cols=234 Identities=14% Similarity=0.206 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCCCCCCCchhhHHHHHHHHHH
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~--~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
.++|...+.++...+...+ .+.....+.+.+.++|+.++++..++.+++..... ..+ .|...+.+++.+.|++
T Consensus 151 ~~~A~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 151 YKDSLALINDLLREFKKLD-DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY----CPTQTVAELDLMSGIL 225 (434)
T ss_dssp HHHHHHHHHHHHHHHTTSS-CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC----CchHHHHHHHHHHHHH
Confidence 3455666666666555432 24566778889999999999999999988654331 122 2456678899999999
Q ss_pred hhHhcChHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHHHhhcCCCCCch-hhh-----h-hc---hhchHHHHHH
Q 021452 125 EVFNENFPAADQKLSYALINCNPQS----EANIRMILKYLIPVKLSIGILPKDW-LLE-----K-YN---LVEYSNIVQA 190 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~~~~----~~nk~~IL~yLIpv~Ll~G~~P~~~-ll~-----~-y~---l~~y~~L~~A 190 (312)
+..+++|.+|..++..||...+... .......+++.+.+.++.+.-.... .+. . +. ...+..+..+
T Consensus 226 ~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEA 305 (434)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 9999999999999999999765432 2334455677776666654322111 111 1 11 2357889999
Q ss_pred HHhCCHHHHHHHHHHchHHHHHhcHH-HHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHH
Q 021452 191 LRRGDLRLLRHALEEHEDQFLRSGVY-LVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDE 269 (312)
Q Consensus 191 vk~Gnl~~f~~~l~~~~~~f~~~gly-lllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~e 269 (312)
+..+++..|+..++.+...+..+... ..+..+...+....++++.. ..++|+++.++.+++ ++.++
T Consensus 306 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~--------~y~~i~l~~la~~l~-----~~~~~ 372 (434)
T 4b4t_Q 306 YNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIE--------PFECVEISHISKIIG-----LDTQQ 372 (434)
T ss_dssp HHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHS--------SCSCEEHHHHHHHHT-----CCHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcCHHHHHHHhC-----cCHHH
Confidence 99999999999999998876665542 33444444333333333322 248999999999998 68999
Q ss_pred HHHHHHHhHHcCcceEEEeeCCeEEEEcc
Q 021452 270 VECIVAILIHKNLVKGYFAHKSKVVVLSK 298 (312)
Q Consensus 270 vE~ila~LI~~G~IkGyIsh~~~~lVlSK 298 (312)
+|..|++||.+|.|.|.|++.++++++..
T Consensus 373 ~E~~l~~lI~~~~i~a~id~~~g~v~~~~ 401 (434)
T 4b4t_Q 373 VEGKLSQMILDKIFYGVLDQGNGWLYVYE 401 (434)
T ss_dssp HHHHHHHHHHHTSSCCEEETTTTEEECC-
T ss_pred HHHHHHHHHhCCCcceecccccCeEeeCC
Confidence 99999999999999999999999998843
No 8
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.9e-12 Score=124.66 Aligned_cols=227 Identities=15% Similarity=0.148 Sum_probs=169.9
Q ss_pred HHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhc
Q 021452 50 AGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE 129 (312)
Q Consensus 50 ~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~ 129 (312)
|...+.++..-|.+++. + +-+.-..+++|+..+++..++..++.+++.. . +.-....+..++.|.|++++..+
T Consensus 150 A~~~~~~~~~~~~~~~~-k---id~~l~~irl~l~~~d~~~~~~~~~ka~~~~--~-~~~d~~~~~~lk~~~gl~~l~~r 222 (429)
T 4b4t_R 150 AEKTLGKSLSKAISTGA-K---IDVMLTIARLGFFYNDQLYVKEKLEAVNSMI--E-KGGDWERRNRYKTYYGIHCLAVR 222 (429)
T ss_dssp HHHHHHHHHHHHTCCCS-H---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--T-TCCCTHHHHHHHHHHHHGGGGTS
T ss_pred HHHHHHHHHHhcCChHH-H---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--h-cCCCHHHHHHHHHHHHHHHHHhC
Confidence 45566666666666532 2 3445567899999999999999988776531 1 01123456789999999999999
Q ss_pred ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCC--------CCchhhhhhc----hhchHHHHHHHHhCCHH
Q 021452 130 NFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGIL--------PKDWLLEKYN----LVEYSNIVQALRRGDLR 197 (312)
Q Consensus 130 ~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~--------P~~~ll~~y~----l~~y~~L~~Avk~Gnl~ 197 (312)
+|.+|..+|..++..+..........+++|.+.++++.... -+.+...-.. +.++..++.++-.++..
T Consensus 223 ~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~ 302 (429)
T 4b4t_R 223 NFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYA 302 (429)
T ss_dssp CHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHH
Confidence 99999999999999988777677788899999999886321 1111111111 23456678899999999
Q ss_pred HHHHHH-HHc-----hHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHH
Q 021452 198 LLRHAL-EEH-----EDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVE 271 (312)
Q Consensus 198 ~f~~~l-~~~-----~~~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE 271 (312)
.|-+.+ +.+ .+.|+..++-.+...+|..+++.+++. .++|+++.++.+|+ ++.+++|
T Consensus 303 ~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~------------Ys~I~l~~mA~~l~-----~s~~~~E 365 (429)
T 4b4t_R 303 SYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLES------------YKTLSLKSMASAFG-----VSVAFLD 365 (429)
T ss_dssp HHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHT------------CSEEEHHHHHHHHT-----SCHHHHH
T ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHH------------hceeeHHHHHHHhC-----cCHHHHH
Confidence 986654 433 245667777778888888888877763 48999999999998 6899999
Q ss_pred HHHHHhHHcCcceEEEeeCCeEEEEccCC
Q 021452 272 CIVAILIHKNLVKGYFAHKSKVVVLSKQD 300 (312)
Q Consensus 272 ~ila~LI~~G~IkGyIsh~~~~lVlSK~~ 300 (312)
..+++||.+|.|.|+|+..+++|+..+.+
T Consensus 366 ~~L~~lI~~g~l~akID~~~giv~~~~~d 394 (429)
T 4b4t_R 366 NDLGKFIPNKQLNCVIDRVNGIVETNRPD 394 (429)
T ss_dssp HHHHHHHHHTSSCEEEETTTTEEEECC--
T ss_pred HHHHHHHHcCCeEEEEcCCCCEEEECCCC
Confidence 99999999999999999999999986544
No 9
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.75 E-value=1.6e-07 Score=84.02 Aligned_cols=180 Identities=9% Similarity=0.022 Sum_probs=131.6
Q ss_pred HHHHHhcCChhhHHHHHHHhhc-----cCCCCCCCCCch--hhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc--
Q 021452 79 FKIYFKLGTVHLCRSVIRSIET-----ARIFDFEEFPKR--DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS-- 149 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik~i~~-----~~~p~~~~~~~~--~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~-- 149 (312)
++-+|.-++++.|..+++.++. ..+|+- .++. +..++-|+.|....++.+..+|++....+++..+.+.
T Consensus 14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~--~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~ 91 (229)
T 4b0z_A 14 LADLYDRKDWNACKKELLKLKVELAKQNLFVPT--SDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLV 91 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCC--SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCC
Confidence 5677888999999999998753 123331 2233 3568999999999999999999999999999766543
Q ss_pred -hHHHHHHHHHHHHHHhhcCCCCCchhhh-h---------hc-hhchHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHHH
Q 021452 150 -EANIRMILKYLIPVKLSIGILPKDWLLE-K---------YN-LVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYL 217 (312)
Q Consensus 150 -~~nk~~IL~yLIpv~Ll~G~~P~~~ll~-~---------y~-l~~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~glyl 217 (312)
..|+..++.|-+..-|..|++|.+...- . .+ +.....+.+|+..||+.+|-+..++........=+..
T Consensus 92 ~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~ 171 (229)
T 4b0z_A 92 PSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKI 171 (229)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHH
Confidence 3578888888888888889888764422 1 11 2234779999999999999999988643221222234
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHH
Q 021452 218 VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAI 276 (312)
Q Consensus 218 llerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~ 276 (312)
++++.|.-+.+.+.| .+ ++||+++++..|.+. +++|++..+..
T Consensus 172 l~~~vR~~~l~~i~k----aY--------~~i~l~~~~~~L~f~----s~~e~~~f~~~ 214 (229)
T 4b0z_A 172 VMSMVRNEIATCAEK----VY--------SEIPLSNATSLLYLE----NTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHH----HC--------SEEEHHHHHHHTTCS----SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----Hc--------CCCCHHHHHHHhCCC----CHHHHHHHHHH
Confidence 667777777655543 33 789999999999863 68899888886
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.32 E-value=2.3e-06 Score=72.98 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=78.5
Q ss_pred chHHHHHHHHhCCHHHHHHHHHHchHHHHHhcH-HHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhc
Q 021452 183 EYSNIVQALRRGDLRLLRHALEEHEDQFLRSGV-YLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWL 261 (312)
Q Consensus 183 ~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~gl-ylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~ 261 (312)
.+.++.+++-.||+..|++.-+.+. ++ -.+.+|+|.+++-.|..+ ...||++.|+.+++..
T Consensus 61 ~~~~LL~iF~~G~~~~y~~~~~~~p------~L~~~~~~KlrlLtL~sLa~~------------~~~lsy~~I~~~l~i~ 122 (169)
T 3chm_A 61 VYLDLLRLFAHGTWGDYKCNATRLP------HLSPDQILKLKQLTVLTLAES------------NKVLPYDTLMVELDVS 122 (169)
T ss_dssp HHHHHHHHHHHCCHHHHHHHGGGSC------CCCHHHHHHHHHHHHHHHHHH------------CSEEEHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCHHHHHHhHHhCc------chHHHHHHHHHHHHHHHHHHh------------CCCcCHHHHHHHhCCC
Confidence 4788999999999999998543332 22 346789999998888763 2679999999999841
Q ss_pred cCCCCHHHHHHHHH-HhHHcCcceEEEeeCCeEEEEccC
Q 021452 262 EMDMDVDEVECIVA-ILIHKNLVKGYFAHKSKVVVLSKQ 299 (312)
Q Consensus 262 ~~~~~~~evE~ila-~LI~~G~IkGyIsh~~~~lVlSK~ 299 (312)
+.+|||.++. ..|+.|+|+|+|+..++++.++..
T Consensus 123 ----~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~ 157 (169)
T 3chm_A 123 ----NVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFA 157 (169)
T ss_dssp ----SHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEE
T ss_pred ----CHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEee
Confidence 3899999999 999999999999999999888754
No 11
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.06 E-value=9.6e-06 Score=61.17 Aligned_cols=51 Identities=12% Similarity=0.300 Sum_probs=47.3
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEccCCC
Q 021452 246 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDP 301 (312)
Q Consensus 246 ~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~~p 301 (312)
+++|+++.++..|+ ++.+++|.++++||.+|.|.|+|+..+++|++.+.+|
T Consensus 28 Y~~Isl~~La~ll~-----ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 28 YNNITFEELGALLE-----IPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CSEEEHHHHHHHTT-----SCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred cCeeeHHHHHHHHC-----cCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 38999999999998 6899999999999999999999999999999987665
No 12
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.25 E-value=0.48 Score=34.76 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+-.+|++.|+++.+...++. ++. .|. . ...++.+|.++...+++++|.+.+..|+...+...
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~---~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVET--DPD---Y-----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STT---C-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---c-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 3456789999999999987764 443 132 1 24778999999999999999999999999877554
No 13
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=93.04 E-value=1.1 Score=35.92 Aligned_cols=99 Identities=15% Similarity=0.027 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
.++|.+.+.++...+...+..........+.+-.+|++.|+++.+...+. +++...-. -........++.+|.++
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA----DDQVAIACAFRGLGDLA 157 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHH
Confidence 34455555555555443222344666777888999999999999987764 34321100 11233445568899999
Q ss_pred hHhcChHHHHHHHHHHHHhcCccc
Q 021452 126 VFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+++++|.+++..|+..+....
T Consensus 158 ~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999776544
No 14
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.97 E-value=1.3 Score=33.46 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 48 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 48 e~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
+++...+.++...+...+ .........+.+-.+|+..++++.+...++. ++.. +. .-.........+..|.++.
T Consensus 26 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~--~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 26 RDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA--RQ--LKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp HHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH--hCCcHHHHHHHHHHHHHHH
Confidence 444444555544443221 1345556777788999999999999987754 3321 11 0123445667888999999
Q ss_pred HhcChHHHHHHHHHHHHhcCcc
Q 021452 127 FNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..++|++|.+.+..|+..+...
T Consensus 101 ~~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999876543
No 15
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.70 E-value=0.69 Score=36.65 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 78 LFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+-++|++.++++.+...++ +++.. |. -...++.+|.++...+++++|..+|..|++..|.+.
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~--p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 99 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ--ER--------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK 99 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence 4578999999999998775 44432 32 135778999999999999999999999999888654
No 16
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.63 E-value=0.96 Score=33.65 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=51.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+-.+|++.|+++.+...+..+-.. .|.. ......+|..|.++...+++++|...|..++...|.+.
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLVSR-YPTH-----DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTS-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH-CCCC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 3456789999999999887654332 2321 12345678999999999999999999999999888654
No 17
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.52 E-value=2.3 Score=31.18 Aligned_cols=67 Identities=12% Similarity=-0.117 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+-.+|++.++++.+...+...-.. .|. ....++..|.++...++|++|.++|..|+...|.+.
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQL-EPT--------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 3445667889999999998877543321 122 235678899999999999999999999999877654
No 18
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=92.51 E-value=2.4 Score=34.49 Aligned_cols=95 Identities=11% Similarity=-0.021 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhH---------HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHH
Q 021452 46 KLKAAGSFLMKVFGVLAGKGSKRVG---------ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVT 116 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~sKk~~---------~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~ 116 (312)
..++|.....++...+-.+.....+ ...+...+-.+|+++++++.+...+...-.. .|. ...
T Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~ 123 (198)
T 2fbn_A 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKN--------NVK 123 (198)
T ss_dssp CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHH
T ss_pred CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Ccc--------cHH
Confidence 3455666666666655444311111 1245566788899999999998776543321 121 245
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+|..|.+++..++|++|.++|..|+...|.+.
T Consensus 124 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 124 ALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 779999999999999999999999999877543
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.40 E-value=2.4 Score=33.35 Aligned_cols=87 Identities=6% Similarity=-0.048 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
.++|...+.++....-++ ..+...+-.+|+++++++.+...++ +++.. |. ....+|..|.++
T Consensus 27 ~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~lg~~~ 89 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPAN-------PIYLSNRAAAYSASGQHEKAAEDAELATVVD--PK--------YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHH
Confidence 344555555555443222 2234456678999999999988775 44431 32 146788999999
Q ss_pred hHhcChHHHHHHHHHHHHhcCccch
Q 021452 126 VFNENFPAADQKLSYALINCNPQSE 150 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c~~~~~ 150 (312)
...++|++|.++|..|+...|.+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999998887654
No 20
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.34 E-value=0.68 Score=34.62 Aligned_cols=69 Identities=7% Similarity=-0.025 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
......+-.+|++.|+++.+...+...-.. .|. . ...++..|.++...+++++|.+.|..|+...|.+.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~------~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPN------H--QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT------C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC------c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 344556678899999999999877643321 232 1 45778899999999999999999999999877653
No 21
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=92.19 E-value=2.5 Score=30.69 Aligned_cols=66 Identities=14% Similarity=-0.131 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+-.+|++.++++.+...+...-.. .|. . ...++..|.++...+++++|...+..|+...|.+.
T Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~------~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 49 FCNRAAAYSKLGNYAGAVQDCERAICI-DPA------Y--SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT------C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhc-Ccc------C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence 345567889999999998877544322 122 1 35678999999999999999999999999877543
No 22
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=91.91 E-value=1.4 Score=38.64 Aligned_cols=73 Identities=11% Similarity=-0.054 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHH-HHHHHHHHHhcCccc
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAA-DQKLSYALINCNPQS 149 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A-~~~L~~A~~~c~~~~ 149 (312)
.+.+.+-.+|++.|+++.+-..+. +++.. +..+ ........+|..|.++...+++++| ..++..|+..+....
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEIS--CRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHH--HhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 567788899999999999998775 44432 1101 1223456779999999999999999 888999998665444
No 23
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=91.82 E-value=1.8 Score=39.25 Aligned_cols=113 Identities=8% Similarity=0.040 Sum_probs=70.4
Q ss_pred HHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChH
Q 021452 54 LMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFP 132 (312)
Q Consensus 54 i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~ 132 (312)
+.++.......++...+.....+.+-.+|..+|+++.+...+. +++.. +.. -........++.+|.++...++|+
T Consensus 166 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~~lg~~y~~~g~~~ 241 (383)
T 3ulq_A 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA--EAE--KQPQLMGRTLYNIGLCKNSQSQYE 241 (383)
T ss_dssp HHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHc--CChHHHHHHHHHHHHHHHHCCCHH
Confidence 3334333333322245566777888899999999999987664 44432 111 112344556788999999999999
Q ss_pred HHHHHHHHHHHhcCccch-HHHHHHHHHHHHHHhhcCCC
Q 021452 133 AADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGIL 170 (312)
Q Consensus 133 ~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIpv~Ll~G~~ 170 (312)
+|.+++..|+..+..... .+.-.++..+--+-.-.|++
T Consensus 242 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (383)
T 3ulq_A 242 DAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKI 280 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCH
Confidence 999999999996544322 22233333333333335654
No 24
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=91.56 E-value=1.1 Score=34.48 Aligned_cols=86 Identities=10% Similarity=-0.101 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
.++|.....++....-++ .. ....+-.+|+++|+++.+-..++ +++.. |. ....+|..|.++
T Consensus 29 ~~~A~~~~~~al~~~p~~----~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~a~~~lg~~~ 91 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPEN----AI---LYSNRAACLTKLMEFQRALDDCDTCIRLD--SK--------FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC----HH---HHHHHhhHHHhhccHHHHHHHHHHHHHhh--hh--------hhHHHHHHHHHH
Confidence 455555555554332222 22 33445678899999999887664 45431 22 135678999999
Q ss_pred hHhcChHHHHHHHHHHHHhcCccc
Q 021452 126 VFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...++|++|.++|..|++..|.+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCH
Confidence 999999999999999999888654
No 25
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.50 E-value=1.6 Score=30.99 Aligned_cols=64 Identities=9% Similarity=-0.023 Sum_probs=49.4
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHH-HHHHHHHHhhHhcChHHHHHHHHHHHHhcCccch
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVT-YMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 150 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~-y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~ 150 (312)
.-..|++.++++.+...++..-.. .|. . .. .++..|.++...++|++|.++|..|+...|....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-~p~------~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-EPV------G--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CSS------T--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCC------c--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 346788999999998877644322 122 1 24 6788999999999999999999999998886653
No 26
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=91.49 E-value=1.1 Score=33.05 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+-.+|++.|+++.+...++. ++. .|. ....+|..|.++...+++.+|...|..|+...|...
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDF--DPT--------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 34556789999999999887754 442 132 134678999999999999999999999999877543
No 27
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.40 E-value=1.7 Score=32.70 Aligned_cols=90 Identities=10% Similarity=-0.068 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
.++|...+.++.... + ...........+-.+|++.++++.+...+...-.. .|. ....+|..|.++.
T Consensus 44 ~~~A~~~~~~a~~~~---~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~ 110 (148)
T 2dba_A 44 YGGALAAYTQALGLD---A-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGG--------DVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHHHHHHHTSC---C-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSC--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---c-cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-Ccc--------CHHHHHHHHHHHH
Confidence 444555555554322 1 11122344455677899999999998777543321 121 1466789999999
Q ss_pred HhcChHHHHHHHHHHHHhcCccc
Q 021452 127 FNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+++++|..+|..|+...|.+.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HcCCHHHHHHHHHHHHHcCCCcH
Confidence 99999999999999999877543
No 28
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=91.23 E-value=1 Score=33.47 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=50.4
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
+-..|++.|+++.+...++.+-.. .|. ........|..|..++..++|.+|.+.+..++...|.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~-~p~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL-YPN-----GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CSS-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-CCC-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 346788999999999888765432 232 12223577899999999999999999999999987765
No 29
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.19 E-value=1.3 Score=34.84 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+...+-.+|+++|+++.|-..+. +++.. |. ....+|..|..+...++|++|...|..|+...|.+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ET--------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--Cc--------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3456677889999999999887664 44431 32 145779999999999999999999999999988654
No 30
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=91.19 E-value=2.3 Score=38.54 Aligned_cols=99 Identities=10% Similarity=-0.067 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhcc-CCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 68 RVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 68 k~~~~~~~n~l~k~Yfkl~~~~l~~~li-k~i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
........+.+-.+|+++|+++.+...+ ++++.. ..+ ........++.+|.++...++|++|.+++..|+..+
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ-----NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3456667788889999999999998766 445432 111 123455677889999999999999999999999965
Q ss_pred CccchHHHHHHHHHHHHHHhhcCCCC
Q 021452 146 NPQSEANIRMILKYLIPVKLSIGILP 171 (312)
Q Consensus 146 ~~~~~~nk~~IL~yLIpv~Ll~G~~P 171 (312)
........-..+..+--+-.-.|++.
T Consensus 253 ~~~~~~~~~~~~~~la~~~~~~g~~~ 278 (378)
T 3q15_A 253 REKVPDLLPKVLFGLSWTLCKAGQTQ 278 (378)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HhhCChhHHHHHHHHHHHHHHCCCHH
Confidence 53332222333333333333346543
No 31
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.11 E-value=2.9 Score=36.70 Aligned_cols=136 Identities=10% Similarity=-0.028 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHhc-CChhhHHHHH-HHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 69 VGALYLTCQLFKIYFKL-GTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 69 ~~~~~~~n~l~k~Yfkl-~~~~l~~~li-k~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.+.....+.+-.+|.+. |+++.+-..+ ++++-. |... ........+.-.|.++...++|++|.+++..|...+|
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 34455666778889995 9999887665 445431 2110 1222344567789999999999999999999999888
Q ss_pred ccchH--HHHHHHHHHHHHHhhcCCCCCc-hhhhhh-ch----------hchHHHHHHHHhCCHHHHHHHHHHchH
Q 021452 147 PQSEA--NIRMILKYLIPVKLSIGILPKD-WLLEKY-NL----------VEYSNIVQALRRGDLRLLRHALEEHED 208 (312)
Q Consensus 147 ~~~~~--nk~~IL~yLIpv~Ll~G~~P~~-~ll~~y-~l----------~~y~~L~~Avk~Gnl~~f~~~l~~~~~ 208 (312)
..... .....+..+..+-+-+|++..- ..++++ .+ ..+..+..++..||...|+++++.++.
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 65421 1222333333344445654332 112221 00 124567888889999999999998744
No 32
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.02 E-value=2.5 Score=29.01 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+-..|++.++++.+...++. ++.. |. .....+..|.++...+++++|.+++..|+...|.+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD--PN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC--CC--------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 34456788999999999887754 4321 22 135678899999999999999999999999877543
No 33
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=91.00 E-value=2.8 Score=29.90 Aligned_cols=63 Identities=11% Similarity=-0.079 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+-..|++.|+++.+...++. ++. .|. . ...++..|.+++..++|++|.+.+..|+...|..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~--~p~------~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITA--QPQ------N--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH--CTT------C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCC------C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4456789999999999887754 443 132 1 3567899999999999999999999999988876
No 34
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=90.94 E-value=1.9 Score=32.54 Aligned_cols=95 Identities=12% Similarity=-0.044 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 48 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 48 e~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
++|...+.++.......+ ...........+-.+|+..++++.+...+.. ++... . .-........++..|.++.
T Consensus 66 ~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~--~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 66 ETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ--E--LKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--H--ccchHhHHHHHHHHHHHHH
Confidence 334444444444333221 1233444566778899999999999877653 33210 0 0123445667788999999
Q ss_pred HhcChHHHHHHHHHHHHhcCc
Q 021452 127 FNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~ 147 (312)
..+++++|.+++..|+..+.+
T Consensus 141 ~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHTCHHHHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.89 E-value=4 Score=35.05 Aligned_cols=76 Identities=11% Similarity=0.035 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCC-CCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDF-EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~-~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+.+-.+|++.|+++.+...++..-.. .|.. +..........++..|.++...+++++|.+.+..|+...|...
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 270 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEK-IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH-hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch
Confidence 34556778899999999999887543321 1111 1111233356778999999999999999999999999877654
No 36
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.87 E-value=2.9 Score=29.68 Aligned_cols=87 Identities=11% Similarity=-0.071 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
.+++...+.++....-++ ......+-.+|++.++++.+...++..-.. .|. .....+..|.++.
T Consensus 20 ~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~ 83 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPD--------WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHH
Confidence 344555555554432222 123344566788999999998877644321 121 1356788999999
Q ss_pred HhcChHHHHHHHHHHHHhcCccc
Q 021452 127 FNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+++++|.+.+..|+...|.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCH
Confidence 99999999999999999877543
No 37
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.82 E-value=1.7 Score=34.23 Aligned_cols=64 Identities=9% Similarity=-0.072 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+-.+|+++|+++.+...++..-.. .|. . ...+|++|.++...+++++|.++|..|+...|.+
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l-~p~---~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVM-DIX---E-----PRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STT---C-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc-CCC---C-----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 35667899999999998877543321 132 1 2467899999999999999999999999988753
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=90.65 E-value=5.6 Score=32.71 Aligned_cols=100 Identities=12% Similarity=0.020 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCC------------------C
Q 021452 48 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEE------------------F 109 (312)
Q Consensus 48 e~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~------------------~ 109 (312)
++|...+.++.....++.............+-.+|.+.|+++.+...++..-.. .|..+. .
T Consensus 55 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CchhHHHHHHhHHHHHHHHHHHHHH
Confidence 344444555444433332223333556667788999999999998877543321 111000 0
Q ss_pred CchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 110 PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 110 ~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
...+....++..|.+++..++|++|.+.+..|+...|.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 122345667889999999999999999999999987754
No 39
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.52 E-value=1.5 Score=35.21 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=43.3
Q ss_pred HHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccch
Q 021452 77 QLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 150 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~ 150 (312)
.+-.+|+++|+++.+-..++ +++-. |. . ...+|.+|.++...|++++|.++|..|+..+|.+..
T Consensus 75 ~lg~~~~~~g~~~~Ai~~~~~al~l~--P~---~-----~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~ 139 (151)
T 3gyz_A 75 GLAAIYQIKEQFQQAADLYAVAFALG--KN---D-----YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--SS---C-----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhC--CC---C-----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH
Confidence 34567778888887776654 33321 32 1 145677888888888888888888888888776543
No 40
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.52 E-value=1.6 Score=32.78 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
+...+-.+|++.++++.+...++..-.. .|. ....+|..|.++...++|.+|...|..|+...|.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 45 YYTNRALCYLKMQQPEQALADCRRALEL-DGQ--------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cch--------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 4455677888999999988777543321 122 2356788999999999999999999999998775
No 41
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=90.52 E-value=1.5 Score=33.94 Aligned_cols=63 Identities=10% Similarity=-0.060 Sum_probs=47.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.+-.+|++.++++.+...++..-.. .|. . ...+|..|.++...+++++|.++|..|+...|.+
T Consensus 57 ~lg~~~~~~g~~~~A~~~~~~al~~-~p~---~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 57 GLGACRQSLGLYEQALQSYSYGALM-DIN---E-----PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT---C-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc-CCC---C-----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4566788999999998877543321 132 1 2456889999999999999999999999987744
No 42
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=90.17 E-value=2.2 Score=37.37 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 69 VGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 69 ~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.+...+.+.+-.+|++.|+++.+...++ +++.. ..|. ........+|..|.++...++|++|.++++.|+..++
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556678889999999999999987764 34321 1221 3456677889999999999999999999999999766
Q ss_pred cc
Q 021452 147 PQ 148 (312)
Q Consensus 147 ~~ 148 (312)
..
T Consensus 228 ~~ 229 (293)
T 3u3w_A 228 RI 229 (293)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 43
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=89.72 E-value=3.8 Score=30.41 Aligned_cols=82 Identities=11% Similarity=-0.056 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
.++|...+.++....-++ . .....+-.+|+++++++.+...++ +++.. |. ....+|..|.++
T Consensus 20 ~~~A~~~~~~al~~~p~~----~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~~~~~lg~~~ 82 (126)
T 3upv_A 20 WPNAVKAYTEMIKRAPED----A---RGYSNRAAALAKLMSFPEAIADCNKAIEKD--PN--------FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC----h---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC--------cHHHHHHHHHHH
Confidence 344555555554433222 1 334455678999999999987765 34421 32 145678899999
Q ss_pred hHhcChHHHHHHHHHHHHhc
Q 021452 126 VFNENFPAADQKLSYALINC 145 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c 145 (312)
...++|++|.++|..|+...
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999987
No 44
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=89.64 E-value=6.6 Score=31.18 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCchhhHHHHHHHHHHh
Q 021452 48 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 48 e~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~-~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
+++...+.++...+...+ .........+.+-.+|...|+++.+...+. +++.. ..++ ........++..|.++
T Consensus 43 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 43 DEARASFQALQQQAQKSG-DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE----DPLAASANAYEVATVA 117 (203)
T ss_dssp HHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc----cHHHHHHHHHHHHHHH
Confidence 444555555555444332 234556677788899999999999987764 34432 1121 1225566788899999
Q ss_pred hHhcChHHHHHHHHHHHHhcCc
Q 021452 126 VFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
...+++++|..++..|+..+..
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987554
No 45
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=89.56 E-value=1.4 Score=31.21 Aligned_cols=66 Identities=9% Similarity=-0.074 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHh-cChHHHHHHHHHHHHhcCcc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN-ENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~-~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+-.+|++.++++.+...++..-.. .|. .......+..|.++... +++++|.+.|..+....|.+
T Consensus 44 ~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 44 LMKGKALYNLERYEEAVDCYNYVINV-IED------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT-SCC------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh-Ccc------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 34566788999999888777543321 122 11245678889999999 99999999999998887754
No 46
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=89.55 E-value=2.6 Score=34.22 Aligned_cols=80 Identities=13% Similarity=0.058 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCC--------CCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEE--------FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~--------~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
...+-.+|++.|+++.+...++..-.. .|.... .-.......+|..|.++...+++++|.+.|..|+...|
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 345667899999999998877543321 122110 01223456789999999999999999999999999988
Q ss_pred ccchHHHHH
Q 021452 147 PQSEANIRM 155 (312)
Q Consensus 147 ~~~~~nk~~ 155 (312)
.........
T Consensus 153 ~~~~~~~~~ 161 (213)
T 1hh8_A 153 EPRHSKIDK 161 (213)
T ss_dssp SGGGGHHHH
T ss_pred ccccchHHH
Confidence 665433333
No 47
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=89.34 E-value=2.3 Score=30.05 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
.+-.+|++.++++.+...++..-.. .|. ....++..|.++...++|++|.+.+..|+...|.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL-DPE--------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh-CcC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3456789999999998877643321 122 1345688999999999999999999999998776
No 48
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=89.32 E-value=3.2 Score=36.25 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 68 RVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 68 k~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
.++...+.+.+-.+|++.|+++.+...+. +++-. ..|. .....+..++..|.++...++|++|.+.++.|+..+
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc----cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566678889999999999999988774 45321 1221 112233678899999999999999999999999976
Q ss_pred C
Q 021452 146 N 146 (312)
Q Consensus 146 ~ 146 (312)
+
T Consensus 227 ~ 227 (293)
T 2qfc_A 227 C 227 (293)
T ss_dssp H
T ss_pred H
Confidence 4
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=88.87 E-value=3.7 Score=36.54 Aligned_cols=70 Identities=11% Similarity=-0.105 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.....+-.+|.+.|+++.+...+.. ++.. +. .-........++..|.++...+++++|.+++..|+..++
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIA--QE--LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHH--Hh--cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544432 2111 00 001222334445555555555555555555555555444
No 50
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=88.81 E-value=5.2 Score=28.89 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
.+.|...+.++....-.+ . .....+-.+|++.++++.+...+...-.. .|.. .-........+|..|.++.
T Consensus 20 ~~~A~~~~~~a~~~~~~~----~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTN----M---TYITNQAAVYFEKGDYNKCRELCEKAIEV-GREN-REDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHS-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcc----H---HHHHHHHHHHHHhccHHHHHHHHHHHHhh-cccc-chhHHHHHHHHHHHHHHHH
Confidence 344555555554432222 2 23345667899999999998877543321 1210 0011222567788999999
Q ss_pred HhcChHHHHHHHHHHHHhcCc
Q 021452 127 FNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~ 147 (312)
..++|++|.++|..|+...|.
T Consensus 91 ~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 91 KEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC
T ss_pred HhccHHHHHHHHHHHHHhCCC
Confidence 999999999999999998763
No 51
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=88.70 E-value=2.5 Score=38.36 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHH---------HHHHHhhccCCCCCCCCCchhhHHHHH
Q 021452 49 AAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCR---------SVIRSIETARIFDFEEFPKRDKVTYMY 119 (312)
Q Consensus 49 ~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~---------~lik~i~~~~~p~~~~~~~~~~v~y~Y 119 (312)
..-..|.+.+.....| ....++..-+.|+...-++..+..+ ..++.+++...+ .+......|+|
T Consensus 33 ~l~~~i~~~~~~~~~~---~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~----~~~~l~~~~~~ 105 (378)
T 3q15_A 33 ILKAEVEQDIQQMEED---QDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK----LTGLLKYYSLF 105 (378)
T ss_dssp HHHHHHHHHGGGBCCC---HHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC----CccHHHHHHHH
Confidence 3333344444444333 3444666666777777667776666 777777753111 11222334677
Q ss_pred HHHHHhhHhcChHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHhhcCCC
Q 021452 120 YTGRLEVFNENFPAADQKLSYALINCNPQS-EANIRMILKYLIPVKLSIGIL 170 (312)
Q Consensus 120 Y~G~~~~~~~~~~~A~~~L~~A~~~c~~~~-~~nk~~IL~yLIpv~Ll~G~~ 170 (312)
+.|.+++..++|.+|.+++..|...+.... ....-.++..+--+-...|++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~ 157 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT 157 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc
Confidence 899999999999999999999999766432 222333333333333334543
No 52
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=88.62 E-value=4.9 Score=28.40 Aligned_cols=64 Identities=3% Similarity=-0.190 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+-..|++.++++.+...+...-.. .|. .....+..|.++...++|++|...+..|+...|.+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKL-DPH--------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 44567888999999999887654332 122 14577889999999999999999999999987653
No 53
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=88.59 E-value=3.9 Score=30.48 Aligned_cols=64 Identities=9% Similarity=-0.224 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+-..|++.++++.+...++..-.. .|. ....++..|.+++..++|.+|...+..|+...|..
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITR-NPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhh-CcC--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 34567889999999999887643321 122 14578889999999999999999999999987753
No 54
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=88.43 E-value=4.2 Score=31.20 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=50.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+-..|++.|+++.+...++..-.. .|. ...+++..|.++...++|++|..++..|+...|.+.
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCML-DHY--------DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 4456789999999999888654332 132 136778999999999999999999999999877654
No 55
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=88.35 E-value=11 Score=33.02 Aligned_cols=131 Identities=12% Similarity=-0.019 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 70 GALYLTCQLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 70 ~~~~~~n~l~k~Yfkl~~~~l~~~li-k~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
......+.+-.+|.+ ++++.+-..+ ++++-. |... ........++-.|.++...++|.+|.+++..|+..++..
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENEE--RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhCC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 334455666777888 8888887655 344431 1111 123345667789999999999999999999999987755
Q ss_pred ch-HHHHHHHHHHHHHHhhcCCCCCc-hhhhhh---c-------hhchHHHHHHHHhCCHHHHHHHHHHc
Q 021452 149 SE-ANIRMILKYLIPVKLSIGILPKD-WLLEKY---N-------LVEYSNIVQALRRGDLRLLRHALEEH 206 (312)
Q Consensus 149 ~~-~nk~~IL~yLIpv~Ll~G~~P~~-~ll~~y---~-------l~~y~~L~~Avk~Gnl~~f~~~l~~~ 206 (312)
.. .+....+.-+..+.+-.|++..- ..+++. + ......+..++..||...|.+ +.++
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~-~~~~ 257 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLR-VCRS 257 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHHHTTCHHHHHH-HTTS
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCHHHHHH-HHhC
Confidence 42 22222333344444444654321 111111 0 012456788899999999988 4433
No 56
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=88.22 E-value=2.7 Score=32.09 Aligned_cols=63 Identities=10% Similarity=-0.056 Sum_probs=49.0
Q ss_pred HHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..=..||+.|+++.+-..++ +++.. |. ....++..|.+++..++|++|.+.++.|++..|...
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD--PE--------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 34567899999999988775 45532 32 136778899999999999999999999999776543
No 57
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=88.12 E-value=2.2 Score=30.94 Aligned_cols=61 Identities=15% Similarity=0.005 Sum_probs=33.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
+..+|++.++++.+...++..-.. .|. . ....+..|.++...+++++|.+.+..+....|.
T Consensus 41 ~a~~~~~~~~~~~A~~~~~~~~~~-~~~------~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 41 LGNAYYKQGDYDEAIEYYQKALEL-DPR------S--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CTT------C--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH-CCC------c--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 455566666666666655433321 111 0 233455666666666666666666666665553
No 58
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=88.10 E-value=4.6 Score=29.44 Aligned_cols=64 Identities=6% Similarity=-0.199 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+-..|++.++++.+...+...-.. .|. . ...++..|.++...++|++|.+.+..|+...|..
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~-~~~------~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKR-NPK------D--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTT-CTT------C--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-CCC------c--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 34556789999999999877654321 121 1 4567889999999999999999999999976653
No 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=88.05 E-value=7.5 Score=29.83 Aligned_cols=64 Identities=17% Similarity=0.025 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+-.+|++.|+++.+...++..-.. .|. .....+..|.++...+++++|.+.+..++...|..
T Consensus 46 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 109 (186)
T 3as5_A 46 LHLGIAYVKTGAVDRGTELLERSLAD-APD--------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh
Confidence 34455666777777776665543321 111 12344566777777777777777777777765543
No 60
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=87.70 E-value=4.1 Score=31.93 Aligned_cols=64 Identities=6% Similarity=-0.114 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
...+-..|++.++++.+...++. ++.. |. ....++..|.+++..++|++|.+++..|+...|..
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA--PA--------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--Cc--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 34556788899999999887754 4421 32 14678889999999999999999999999987654
No 61
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=87.69 E-value=3.8 Score=35.75 Aligned_cols=76 Identities=9% Similarity=-0.069 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhc-ChHHHHHHHHHHHHhc
Q 021452 68 RVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE-NFPAADQKLSYALINC 145 (312)
Q Consensus 68 k~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~-~~~~A~~~L~~A~~~c 145 (312)
......+.+.+-.+|+++|+++.|...+. +++-. +... ........++..|.++...+ +|++|.+++..|+..+
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~--~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--CRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45566677889999999999999988764 44432 1111 12234667899999999999 5799999999999865
Q ss_pred Cc
Q 021452 146 NP 147 (312)
Q Consensus 146 ~~ 147 (312)
..
T Consensus 268 ~~ 269 (293)
T 3u3w_A 268 DI 269 (293)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 62
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=87.66 E-value=4.8 Score=31.57 Aligned_cols=66 Identities=11% Similarity=0.031 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+-..|++.|+++.+...++..-.. -|. -..+++..|.++...++|++|.+.+..|+...|.+.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVL-DHY--------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-Ccc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 344567889999999999888654332 122 135678899999999999999999999999877654
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=87.58 E-value=1.5 Score=34.90 Aligned_cols=29 Identities=14% Similarity=-0.223 Sum_probs=16.2
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
.++.+|.++...+++++|.++|+.|++.-
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 34555555555555555555555555543
No 64
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=87.44 E-value=6.6 Score=33.97 Aligned_cols=69 Identities=10% Similarity=-0.022 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
......+-.+|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.|..|++..|.+.
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQM-EPD--------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 344556778899999999999887654432 122 135778899999999999999999999999877644
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=87.23 E-value=6.1 Score=35.03 Aligned_cols=120 Identities=16% Similarity=0.053 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCchhhHHHHHHHHHH
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~-~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
.+.|...+.++...+...+ .........+.+-.+|+..|+++.+...++ +++.. ..+ ........++..|.+
T Consensus 163 ~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-----DKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHH
Confidence 6666666777666554332 234455566666778888888888776654 33321 111 234556677888888
Q ss_pred hhHhcChHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHHHhhcCCCCC
Q 021452 125 EVFNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPK 172 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIpv~Ll~G~~P~ 172 (312)
+...+++++|..++..|+..++.... ...-.++..+.-+-...|++..
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 285 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 285 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHH
Confidence 88888888888888888877665432 2333344444444444555443
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=87.21 E-value=2.2 Score=36.28 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=51.9
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+-..|++.|+++.+...++.+-.. .|. .......+|++|.+++..++|.+|.+.|..++...|.+.
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~-~p~-----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTY-GRT-----HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGG-CSC-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-CCC-----CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 345788999999999988765542 232 112356789999999999999999999999999988653
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=87.20 E-value=4.7 Score=34.28 Aligned_cols=76 Identities=8% Similarity=-0.063 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hcc-CCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 69 VGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 69 ~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i-~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.........+-.+|++.|+++.+...++.. +.. .... -........++..|.++...+++++|.+.+..|+..++
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG---PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC---TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344556677889999999999998877543 321 1100 01344566788899999999999999999999999766
Q ss_pred c
Q 021452 147 P 147 (312)
Q Consensus 147 ~ 147 (312)
.
T Consensus 227 ~ 227 (311)
T 3nf1_A 227 E 227 (311)
T ss_dssp H
T ss_pred H
Confidence 4
No 68
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=87.11 E-value=5.4 Score=38.12 Aligned_cols=93 Identities=13% Similarity=-0.030 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhhhcCC-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc--CCCCCCCCCchhhHHHHHHHH
Q 021452 47 LKAAGSFLMKVFGVLAGK-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA--RIFDFEEFPKRDKVTYMYYTG 122 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d-~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~--~~p~~~~~~~~~~v~y~YY~G 122 (312)
.++|.....++...-..- +..+..+....|.+..+|...|+++-+..+.+ +++.. .+++ ...+..+-++-+|
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----~Hp~~a~~l~nLa 389 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV----YSLNVASMWLKLG 389 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS----SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC----CChHHHHHHHHHH
Confidence 344555555555433222 23478889999999999999999999988764 44331 2222 1345666678899
Q ss_pred HHhhHhcChHHHHHHHHHHHH
Q 021452 123 RLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 123 ~~~~~~~~~~~A~~~L~~A~~ 143 (312)
.+|..+|+|++|...+.+|+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999998
No 69
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=87.05 E-value=12 Score=31.15 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
.++|...+.++...--++ ... ...+-.+|++.|+++.+...+...-.. |.- + .....-++..|.++.
T Consensus 19 ~~~A~~~~~~~l~~~p~~---~~~----~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~---~-~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKKYNS---PYI----YNRRAVCYYELAKYDLAQKDIETYFSK--VNA---T-KAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHHHHHTTCCC---STT----HHHHHHHHHHTTCHHHHHHHHHHHHTT--SCT---T-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc---HHH----HHHHHHHHHHHhhHHHHHHHHHHHHhc--cCc---h-hHHHHHHHHHHHHHH
Confidence 455555555555432222 122 223344899999999999877654332 210 1 112345688999999
Q ss_pred HhcChHHHHHHHHHHHHhcCccc
Q 021452 127 FNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+++++|.+++..|+...|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~ 108 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRL 108 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HcccHHHHHHHHHHHHhcCcccH
Confidence 99999999999999999887655
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=87.05 E-value=10 Score=34.14 Aligned_cols=97 Identities=6% Similarity=-0.076 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 48 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 48 e~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
++|...+.++...+... ..........+.+-.+|++.|+++.+...++ +++-.. . .-.......-++.+|.++.
T Consensus 201 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~--~--~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 201 EDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE--E--SNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H--TTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--h--hccchhHHHHHHHHHHHHH
Confidence 34444444444443322 2234555667778999999999999987764 444210 0 0011233566789999999
Q ss_pred HhcChHHHHHHHHHHHHhcCccc
Q 021452 127 FNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+++++|.+++..|+..++...
T Consensus 276 ~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 276 KLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999877544
No 71
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=87.01 E-value=10 Score=31.33 Aligned_cols=89 Identities=9% Similarity=-0.009 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
.++|...+.++......+ ......+..+|++.|+++.+...+...-.. |. .| ......+..|.+++
T Consensus 87 ~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~---~~--~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 87 PKLADEEYRKALASDSRN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQD--TL---YP--ERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTC--TT---CT--THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhC--cc---Cc--ccHHHHHHHHHHHH
Confidence 455566666655442222 123455677889999999999888655431 11 12 23456778899999
Q ss_pred HhcChHHHHHHHHHHHHhcCccc
Q 021452 127 FNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+++++|.+.+..|+...|...
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~ 175 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLNRNQP 175 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCH
T ss_pred HcCCHHHHHHHHHHHHhcCcccH
Confidence 99999999999999999887643
No 72
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=86.99 E-value=8.5 Score=29.28 Aligned_cols=66 Identities=8% Similarity=-0.107 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+-.+|++.++++.+...++..-.. .|. ....++..|.++...++|++|.+++..|+...|.+.
T Consensus 50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 50 YGNRSLAYLRTECYGYALGDATRAIEL-DKK--------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 345567788999999998777543321 121 134678899999999999999999999999877543
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=86.98 E-value=4.7 Score=34.24 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhhcCC-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc----C---C-CC-------------
Q 021452 48 KAAGSFLMKVFGVLAGK-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA----R---I-FD------------- 105 (312)
Q Consensus 48 e~~~~~i~~~f~~~~~d-~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~----~---~-p~------------- 105 (312)
++|...+.++...+... +............+-.+|++.|+++.+...++..-.. . . +.
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE 249 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 44444445544433221 1112344566777889999999999998877533210 0 0 00
Q ss_pred -----------------CCC--CCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 106 -----------------FEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 106 -----------------~~~--~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
+.. -........++.+|.++...+++++|.+.|..|+...++
T Consensus 250 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 250 CKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 000 012455677889999999999999999999999987553
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=86.97 E-value=5 Score=34.15 Aligned_cols=120 Identities=15% Similarity=0.040 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCchhhHHHHHHHHHH
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~-~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
.+.+...+.++...+...+ ...........+-.+|+..|+++.+...++. ++.. ..+ ........++..|.+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~l~~~ 232 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-----DKAAERRAYSNLGNA 232 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHH
Confidence 6666666666655444221 1244445556667788888888887766643 3321 111 234556677888888
Q ss_pred hhHhcChHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHHHhhcCCCCC
Q 021452 125 EVFNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPK 172 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIpv~Ll~G~~P~ 172 (312)
+...+++++|.+.+..|+..++.... .....++..+.-+-...|++..
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 281 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888888888888877665432 3334444444444455666554
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.96 E-value=7.1 Score=34.10 Aligned_cols=78 Identities=8% Similarity=-0.054 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 70 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 70 ~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+.+.+-.+|.++|+++.+-..++..-.. .|... ...-....+++-.|.++...+++.+|.++++.|....|...
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCT-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCC-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 33456677788999999999999877644321 12211 11112233667789999999999999999999999777543
No 76
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=86.92 E-value=11 Score=30.75 Aligned_cols=66 Identities=14% Similarity=0.015 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+-.+|.+.|+++.+...++..-.. .|. . ....+..|.+++..+++++|.+.+..|+...|...
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~------~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 159 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRA-GME------N--GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT 159 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-TCC------S--HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCC------C--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH
Confidence 345567788889988888877644332 121 1 23567788888888999999999999988877543
No 77
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=86.85 E-value=4.9 Score=36.17 Aligned_cols=121 Identities=14% Similarity=0.042 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
.+.+.....++.......+ ...........+-.+|++.|+++.+...++. ++.. +. .-........++..|.++
T Consensus 199 ~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~--~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLG-DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--RE--FGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH--HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hh--cCCcHHHHHHHHHHHHHH
Confidence 7777777777666554332 1345556666778888889998888876643 3332 11 112345567778889999
Q ss_pred hHhcChHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHHHhhcCCCCC
Q 021452 126 VFNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPK 172 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIpv~Ll~G~~P~ 172 (312)
...++|.+|.+++..|+..++.... .....++..+.-+-+..|++..
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999887775432 3334455555555555676554
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=86.67 E-value=3 Score=35.59 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCchhhHHHHHHHHHH
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~-~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
.+++...+.++...+...++ ..........+-.+|++.|+++.+...+.. ++.. ... ........++..|.+
T Consensus 199 ~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFGD-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-----DRAVEAQSCYSLGNT 272 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHH
Confidence 44555555665555443321 344555566677788888888888876653 3322 111 244566777888888
Q ss_pred hhHhcChHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHHHhhcCCC
Q 021452 125 EVFNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGIL 170 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIpv~Ll~G~~ 170 (312)
+...+++++|.+.+..|+...+.... .....++..+.-+-.-.|++
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 88888888888888888887665432 23333343444333344543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=86.44 E-value=3.1 Score=34.39 Aligned_cols=72 Identities=10% Similarity=-0.072 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
....+-.+|.+.|+++.+...++..-.. .|.. ..........++..|.++...++|++|.+.+..|++..|.
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTEGIKA-VPGN-ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCc-HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 3445677899999999999887644321 2321 1112334467899999999999999999999999998775
No 80
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.43 E-value=7.8 Score=28.84 Aligned_cols=70 Identities=11% Similarity=-0.042 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.....+-..|++.++++.+...++..-.. .|. ..+....++..|..+...++|++|.+.+..|+...|.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL-DAT-----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS-CCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-ccc-----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 34456677899999999999887654321 121 12346778889999999999999999999999976644
No 81
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=86.41 E-value=5.9 Score=29.27 Aligned_cols=62 Identities=15% Similarity=-0.054 Sum_probs=48.7
Q ss_pred HHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.+-..|++.|+++.+-..++. ++.. |. ....++..|.+++..++|++|.+++..|+...|..
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRA--PE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CC--------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 445678999999999887753 4431 32 13678899999999999999999999999987754
No 82
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=86.30 E-value=7.7 Score=30.52 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=44.3
Q ss_pred HHHH-HHhcCCh--hhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 78 LFKI-YFKLGTV--HLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 78 l~k~-Yfkl~~~--~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+-.+ |++.+++ +.+...+...-.. .|. . ...++..|.+++..++|++|...|..|+...|.+.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~-~p~------~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL-DSN------E--ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH-CTT------C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh-CCC------c--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 3445 7788887 7777666533221 122 1 34667889999999999999999999999888654
No 83
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=86.28 E-value=12 Score=31.01 Aligned_cols=65 Identities=8% Similarity=-0.026 Sum_probs=43.3
Q ss_pred hcCChhhHHHHHHHhhccCCCCCCCCCc---------hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 84 KLGTVHLCRSVIRSIETARIFDFEEFPK---------RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 84 kl~~~~l~~~lik~i~~~~~p~~~~~~~---------~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..++++.+...++.+-.. .|.-...+. .....+.+..|.+++.+++|.+|...|+.++...|.+.
T Consensus 108 ~~~~~~~A~~~~~~~l~~-~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRG-YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp CCHHHHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred CcHHHHHHHHHHHHHHHH-CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 356777777766654432 343111110 01123457899999999999999999999999988754
No 84
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=86.16 E-value=6.1 Score=31.54 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=50.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+-..|++.|+++-+...++..-.. -|. -..+++.+|.++...++|++|.++|..|+...|.+.
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~-~P~--------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIY-DFY--------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 3446789999999999888654432 132 135788899999999999999999999999888655
No 85
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=85.91 E-value=7.5 Score=27.62 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+-..|++.++++.+...+...-.. .|. .....+..|.++...+++++|...+..++...|.+
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-CcC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 44567889999999998887654332 121 13466788999999999999999999999876643
No 86
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=85.90 E-value=7.5 Score=27.62 Aligned_cols=67 Identities=13% Similarity=0.007 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+-.+|++.++++.+...++..-.. .|. . ....+..|.++...+++++|...+..++...|.+.
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~------~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPN------N--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT------C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCc------c--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 3456678899999999999888654432 121 1 34567899999999999999999999999877543
No 87
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=85.87 E-value=5.5 Score=35.80 Aligned_cols=61 Identities=15% Similarity=-0.004 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHHHhhcCCCCC
Q 021452 112 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPK 172 (312)
Q Consensus 112 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIpv~Ll~G~~P~ 172 (312)
......++..|.+++..++|++|.+++..|+..++.... .....++..+.-+-+..|++..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 445678899999999999999999999999998886543 3344455555555566677654
No 88
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.78 E-value=5.4 Score=36.22 Aligned_cols=74 Identities=12% Similarity=0.002 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 70 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 70 ~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
...-+...+.++|+..|+++.+..++..+-... .. .-.+.+.+.+....|+++...++|.+|...++.|....+
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREF-KK--LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TT--SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH-Hh--cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 334566788999999999999999887654321 11 124577889999999999999999999999999988544
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=85.77 E-value=8.4 Score=34.31 Aligned_cols=101 Identities=14% Similarity=0.001 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 68 RVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 68 k~~~~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
..+.....+.+-.+|+..|+++.+...+.. ++.. .... ..........+..|.++...+++++|..++..|+..+
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL---EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc---ccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 345556667788899999999998877653 3321 1111 0012344556779999999999999999999999988
Q ss_pred CccchHHHHHHHHHHHHHHhhcCCCC
Q 021452 146 NPQSEANIRMILKYLIPVKLSIGILP 171 (312)
Q Consensus 146 ~~~~~~nk~~IL~yLIpv~Ll~G~~P 171 (312)
+.......-..+..+--+.+..|++.
T Consensus 166 ~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (373)
T 1hz4_A 166 SSYQPQQQLQCLAMLIQCSLARGDLD 191 (373)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHH
T ss_pred hccCcHHHHHHHHHHHHHHHHcCCHH
Confidence 86543322222333333333346553
No 90
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=85.74 E-value=14 Score=30.63 Aligned_cols=92 Identities=16% Similarity=0.028 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHh
Q 021452 46 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
..++|...+.++......+ ..........+-.+|++.|+++.+...++..-.. .|. ....++.+|.++
T Consensus 20 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~la~~~ 87 (275)
T 1xnf_A 20 QQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAI-RPD--------MPEVFNYLGIYL 87 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-CCC--------cHHHHHHHHHHH
Confidence 4555555555555432211 1222334445566677777777777665433221 121 123456677777
Q ss_pred hHhcChHHHHHHHHHHHHhcCccc
Q 021452 126 VFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...++|++|...+..|+...|...
T Consensus 88 ~~~~~~~~A~~~~~~al~~~~~~~ 111 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELDPTYN 111 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHccCHHHHHHHHHHHHhcCcccc
Confidence 777777777777777777666443
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=85.60 E-value=5.3 Score=32.96 Aligned_cols=66 Identities=14% Similarity=0.024 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+.+.+-.+|++.|+++.+...++. ++.. |. -...++.+|.+++..+++++|.+.|..|+..-|.+.
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKA--PN--------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 345578899999999999987754 4431 32 146778899999999999999999999999888654
No 92
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=85.53 E-value=12 Score=29.76 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=15.2
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
..+..|.++...+++++|...+..++...|
T Consensus 115 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 144 (225)
T 2vq2_A 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334455555555555555555555555443
No 93
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=85.52 E-value=5.9 Score=29.80 Aligned_cols=63 Identities=13% Similarity=-0.102 Sum_probs=47.8
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+-..|++.|+++.+...++..-.. .|. ....+|.+|.++...+++++|...|..|+...|...
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~-~P~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 85 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK-EPE--------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 345678899999988877643321 132 135678999999999999999999999999877643
No 94
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=85.35 E-value=14 Score=30.35 Aligned_cols=61 Identities=13% Similarity=0.011 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
....+-.+|++.|+++.+...++..-.. .|. .....+..|.+++..+++++|.+.+..|+.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALAS-DSR--------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcC--------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445677899999999999888654332 121 135667889999999999999999999998
No 95
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=85.34 E-value=6.4 Score=37.44 Aligned_cols=69 Identities=10% Similarity=-0.106 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+.+..+|.+.|+++.+...++.+-... |. ....++.+|.++...|++++|.+.+..|++..|.+.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN--------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC--------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 3456677889999999999999887654321 22 135678899999999999999999999999888654
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=85.21 E-value=3.7 Score=37.69 Aligned_cols=95 Identities=7% Similarity=-0.016 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhc--ChHHHHHHHHHHHHhcCc
Q 021452 70 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE--NFPAADQKLSYALINCNP 147 (312)
Q Consensus 70 ~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~--~~~~A~~~L~~A~~~c~~ 147 (312)
+-+-...+..++|.++|++++++..++.+.... |+ .....+.+....-.|-+.+..+ ++++|+..|+++...+|.
T Consensus 134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-~d--~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNAI-ED--TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CH--HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cc--ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 677788889999999999999999999887531 10 0001345555566687888888 999999999999888875
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCCCc
Q 021452 148 QSEANIRMILKYLIPVKLSIGILPKD 173 (312)
Q Consensus 148 ~~~~nk~~IL~yLIpv~Ll~G~~P~~ 173 (312)
...-..++. +.+.+|++|..
T Consensus 211 --~~~~~lLln----~~~~~g~~~eA 230 (310)
T 3mv2_B 211 --WKTQLGLLN----LHLQQRNIAEA 230 (310)
T ss_dssp --HHHHHHHHH----HHHHHTCHHHH
T ss_pred --cccHHHHHH----HHHHcCCHHHH
Confidence 111122222 56667777764
No 97
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=85.16 E-value=11 Score=35.49 Aligned_cols=94 Identities=15% Similarity=0.055 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCC--------chhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHH
Q 021452 46 KLKAAGSFLMKVFGVLAGKGS--------KRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVT 116 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~s--------Kk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~ 116 (312)
..+.|.....++....-++.. -......+.+.+-.+|+++++++.|...++ +++.. |. .+.
T Consensus 283 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~ 352 (457)
T 1kt0_A 283 KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SA--------NEK 352 (457)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT--------CHH
T ss_pred CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc--------cHH
Confidence 345556666666554443310 111223456677889999999999987765 44431 32 246
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+|..|..++..++|++|..+|..|+...|.+.
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 789999999999999999999999999877543
No 98
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=85.06 E-value=4.2 Score=30.92 Aligned_cols=62 Identities=13% Similarity=0.041 Sum_probs=48.7
Q ss_pred HHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 77 QLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.+=..||+.|+++.+-..++ +++-. |. -..+++..|.+++..++|++|.+.+..|+...|..
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~--p~--------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD--PS--------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 44567899999999987764 55532 32 14677889999999999999999999999976644
No 99
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=85.02 E-value=8.7 Score=27.60 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
...+-..|++.++++.+...+...-.. .|. ....++..|.++...++|++|...+..|+...|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL-DPT--------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc-CCc--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 345567889999999999887644332 122 13567889999999999999999999999976643
No 100
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=85.01 E-value=14 Score=30.08 Aligned_cols=67 Identities=10% Similarity=-0.129 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.....+-.+|++.|+++.+...++..-.. .|. ....++..|.++...++|++|.+.+..|+...|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKR-APE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-Ccc--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 34556778899999999999887654332 122 13677889999999999999999999999977653
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=84.82 E-value=3.7 Score=33.27 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+-.+|++.|+++.+...++..-.. .|. ....++..|.+++..++|++|.+.|..|+...|.+.
T Consensus 39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 39 ICFNIGCMYTILKNMTEAEKAFTRSINR-DKH--------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-Ccc--------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 4556677899999999998877543321 122 135678899999999999999999999999887644
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=84.67 E-value=2.8 Score=34.97 Aligned_cols=76 Identities=8% Similarity=-0.036 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 69 VGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 69 ~~~~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.........+-.+|++.|+++.+...+.. ++.. .... -........++.+|.++...+++++|.+.|..|+..++
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG---PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34455667788899999999999887753 3321 0000 01234566778899999999999999999999999755
Q ss_pred c
Q 021452 147 P 147 (312)
Q Consensus 147 ~ 147 (312)
.
T Consensus 201 ~ 201 (283)
T 3edt_B 201 E 201 (283)
T ss_dssp H
T ss_pred H
Confidence 3
No 103
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=84.65 E-value=9 Score=27.44 Aligned_cols=68 Identities=9% Similarity=-0.144 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
......+-..|+..++++.+...++..-.. .|. .....+..|.++...++|++|.+.+..|+...|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPA--------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 344556677889999999998877644322 122 14567889999999999999999999999976654
No 104
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=84.62 E-value=6.8 Score=31.39 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+-..|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKS-DPK--------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh-Ccc--------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 3456677899999999999887654332 122 134678899999999999999999999999877543
No 105
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=84.47 E-value=7.7 Score=32.77 Aligned_cols=94 Identities=12% Similarity=-0.020 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHh
Q 021452 46 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
..++|...+.++....-++. ..... ...+-.+|++.|+++.+...++.+-.. .|. ......-+|..|..+
T Consensus 30 ~~~~A~~~~~~~l~~~p~~~-~~~~a---~~~lg~~~~~~~~~~~A~~~~~~~l~~-~p~-----~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 30 KYDRAIEYFKAVFTYGRTHE-WAADA---QFYLARAYYQNKEYLLAASEYERFIQI-YQI-----DPRVPQAEYERAMCY 99 (261)
T ss_dssp CHHHHHHHHHHHGGGCSCST-THHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCc-chHHH---HHHHHHHHHHhCcHHHHHHHHHHHHHH-CCC-----CchhHHHHHHHHHHH
Confidence 34555665555544322221 11222 233456789999999999888654432 232 112335578999999
Q ss_pred hH--------hcChHHHHHHHHHHHHhcCccc
Q 021452 126 VF--------NENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 126 ~~--------~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+. .+++.+|.+.|..++...|.+.
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 99 9999999999999999988764
No 106
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=84.17 E-value=5 Score=33.64 Aligned_cols=70 Identities=13% Similarity=-0.060 Sum_probs=47.6
Q ss_pred HHHHHHHhcCC---hhhHHHHHH-Hhhcc-CCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGT---VHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~---~~l~~~lik-~i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+-.+|+.+++ ++.+...+. +++.. ..|..+ ....+..++++|.++...+++++|.+++..|+...|.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY---KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 34566777776 555554443 23221 112211 344567889999999999999999999999999888655
No 107
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=84.15 E-value=9.7 Score=28.94 Aligned_cols=66 Identities=11% Similarity=-0.124 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
....+-..|++.|+++.+...+...-.. .|. ....++..|.++...++|.+|.+.+..|+...|..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL-NPS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3455667889999999998877643321 122 14567889999999999999999999999987754
No 108
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=84.13 E-value=8.2 Score=29.62 Aligned_cols=67 Identities=12% Similarity=-0.052 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+-..|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..++...|...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 76 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-------DAF--DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT-------TSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-------Ccc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 3345667889999999999888644321 121 146678899999999999999999999999877544
No 109
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=84.09 E-value=29 Score=33.47 Aligned_cols=90 Identities=7% Similarity=-0.031 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhh---hhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc--CCCCCCCCCchhhHHHHHHH
Q 021452 48 KAAGSFLMKVFG---VLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA--RIFDFEEFPKRDKVTYMYYT 121 (312)
Q Consensus 48 e~~~~~i~~~f~---~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~--~~p~~~~~~~~~~v~y~YY~ 121 (312)
++|.....++.. ..+++ .+..+....|.|..+|...|+++-+..+.. +++.. .+++ ...+..+-++-+
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~--~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----~Hp~~a~~l~nL 399 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFAD--TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH----NNAQLGMAVMRA 399 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCT--TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 444444444443 33444 367889999999999999999999988764 44431 2222 124566677889
Q ss_pred HHHhhHhcChHHHHHHHHHHHH
Q 021452 122 GRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 122 G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
|.+|..+|+|++|...+..|+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=84.06 E-value=9.5 Score=27.26 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=34.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
.+-..|++.|+++.+..+++..-.. .|. .....+..|.++...+++++|...+..+....|.
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL-DPR--------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc-CCc--------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 3445566666666666665543321 111 1233455666666666777777777776665554
No 111
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=83.90 E-value=5.7 Score=36.68 Aligned_cols=70 Identities=11% Similarity=-0.060 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 70 GALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 70 ~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
....+.+.+-.+|+++++++.|...++ +++.. | +....+|..|..+...++|++|.++|+.|++..|.+
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p--------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEID--P--------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--T--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--c--------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 345566778889999999999987765 44421 2 224667999999999999999999999999998864
Q ss_pred c
Q 021452 149 S 149 (312)
Q Consensus 149 ~ 149 (312)
.
T Consensus 341 ~ 341 (370)
T 1ihg_A 341 K 341 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 112
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=83.28 E-value=14 Score=34.91 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCC----hhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHH
Q 021452 46 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGT----VHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYT 121 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~----~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~ 121 (312)
..++|...+.++....-++ -...+.++..+.+.||..++ ++.+...++..-.. .|. ..+....++.+
T Consensus 194 ~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~~~~l 264 (474)
T 4abn_A 194 HVMDSVRQAKLAVQMDVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-DRK-----ASSNPDLHLNR 264 (474)
T ss_dssp HHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-CGG-----GGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-CCC-----cccCHHHHHHH
Confidence 4555555555555443232 34456666666677776655 66666655433221 121 12345778999
Q ss_pred HHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 122 GRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 122 G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
|.++...++|++|.++|..|+..-|..
T Consensus 265 g~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 265 ATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999987754
No 113
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=82.78 E-value=21 Score=30.27 Aligned_cols=87 Identities=11% Similarity=-0.020 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHh
Q 021452 46 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
..+++...+.++......+ ......+-.+|.+.|+++.+...++..-.. .|. ....++..|.++
T Consensus 153 ~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~ 216 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVEL-RPD--------DAQLWNKLGATL 216 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHH
Confidence 4455666666665443222 234455677889999999999887654332 121 134678899999
Q ss_pred hHhcChHHHHHHHHHHHHhcCcc
Q 021452 126 VFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
...+++++|.+.+..|+...|..
T Consensus 217 ~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999987754
No 114
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=82.78 E-value=2.3 Score=33.79 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 113 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 113 ~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+..+-++-+|..+...|+|++|.++|+.|++..|.+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~ 39 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV 39 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3445667789999999999999999999999877654
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=82.77 E-value=8.4 Score=33.88 Aligned_cols=77 Identities=8% Similarity=-0.026 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 68 RVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 68 k~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
........+.+-.+|.++|+++.+-..+. +++.. |... .......+++-.|.+++..+++.+|..++..|+ ..|
T Consensus 151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY--KEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 34445667778889999999999987765 34321 1111 122334466778888888899999999999999 777
Q ss_pred ccc
Q 021452 147 PQS 149 (312)
Q Consensus 147 ~~~ 149 (312)
...
T Consensus 226 ~~~ 228 (307)
T 2ifu_A 226 GFS 228 (307)
T ss_dssp TST
T ss_pred CCC
Confidence 543
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=82.75 E-value=6.5 Score=35.45 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhhhcCCC---C-----chhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHH
Q 021452 47 LKAAGSFLMKVFGVLAGKG---S-----KRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTY 117 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~---s-----Kk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y 117 (312)
.++|.....++....-++. . -........+.+-.+|+++++++.+...++ +++.. |. ....
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~a 232 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SN--------NEKG 232 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHH
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------cHHH
Confidence 4556666666665544331 0 011113455677889999999999987775 44431 32 2456
Q ss_pred HHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 118 MYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 118 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+|..|..++..++|++|...|..|+...|.+.
T Consensus 233 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 233 LSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 79999999999999999999999999887543
No 117
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=82.56 E-value=13 Score=32.84 Aligned_cols=91 Identities=10% Similarity=-0.049 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHH
Q 021452 45 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 45 ~~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
...++|...+.++....-++. ... ..+.+-.+|.+.|+++.+...++..-.. .|. ....++..|.+
T Consensus 191 g~~~~A~~~~~~al~~~p~~~--~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~ 256 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMI--DPD---LQTGLGVLFHLSGEFNRAIDAFNAALTV-RPE--------DYSLWNRLGAT 256 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSC--CHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCcc--CHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHH
Confidence 467777777777766533310 122 2345567888899999888877643321 122 13456788899
Q ss_pred hhHhcChHHHHHHHHHHHHhcCccc
Q 021452 125 EVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+...++|++|.+.+..|+...|...
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCch
Confidence 9999999999999999998877643
No 118
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=82.41 E-value=3.9 Score=31.14 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCchhhHHHHHHHHHHh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLE 125 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~li-k~i~~~~~p~~~~~~~~~~v~y~YY~G~~~ 125 (312)
.++|.....++....-++ . ...+.+-.+|+++|+++.|-..+ ++++.. |.. .-.......-++-+|..+
T Consensus 24 ~~~A~~~y~~Al~~~p~~----~---~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~-~~~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSN----I---TFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RET-RADYKLIAKAMSRAGNAF 93 (127)
T ss_dssp HHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC----H---HHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--ccc-chhhHHHHHHHHHHHHHH
Confidence 455555555555442222 2 23445677899999999998655 455532 210 011223344567799999
Q ss_pred hHhcChHHHHHHHHHHHHhcCc
Q 021452 126 VFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 126 ~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
...++|++|.+.++.|+...|.
T Consensus 94 ~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHcCCHHHHHHHHHHHHhhCcC
Confidence 9999999999999999997664
No 119
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=82.14 E-value=8.8 Score=28.20 Aligned_cols=70 Identities=13% Similarity=0.004 Sum_probs=50.8
Q ss_pred HHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+=+.+|+.+++..+..-++ +++... ++ ..+.......++++|..+.-.|++++|..++..|++.-|.+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~-~~--~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLD-EG--EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-TT--CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhh-cc--CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 34577889999999987664 343211 11 112234456679999999999999999999999999877653
No 120
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=82.13 E-value=1.3 Score=32.98 Aligned_cols=31 Identities=10% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.-+|-+|..++.+++|..|..+|..|++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~ 36 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLD 36 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhh
Confidence 3468899999999999999999999999653
No 121
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=81.94 E-value=9.5 Score=31.05 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+-.+|++.|+++.+...++..-.. .|. .....+..|.++...+++++|.+.+..++...|...
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 125 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALEL-DSS--------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCc--------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 3445677899999999999888654432 121 235668899999999999999999999999887653
No 122
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=81.84 E-value=2.5 Score=33.23 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 114 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 114 ~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.....|.+|++|+..++|++|.++|..|++..|.+.
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~ 65 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP 65 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 344568899999999999999999999999887654
No 123
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=81.37 E-value=13 Score=30.65 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 69 VGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 69 ~~~~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
.......+.+-.+|...|+++.+...+.. ++.. .... -........++.+|.++...++|++|.+.+..|+..+
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG---KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34555677788999999999999887653 3321 0000 0124556778889999999999999999999999974
No 124
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=81.08 E-value=21 Score=31.11 Aligned_cols=66 Identities=11% Similarity=-0.050 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+.+-.+|++.|+++.+...++..-.. .|. ....++..|.++...+++.+|.+.+..|+...|..
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSV-RPN--------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3445677888999999888877543321 122 13466788999999999999999999998876643
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=81.04 E-value=5.7 Score=33.10 Aligned_cols=66 Identities=6% Similarity=-0.091 Sum_probs=51.3
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+-..|++.|+++.+...+..+-.. .|. ......-.|.+|..++..++|++|.+.|..+++..|.+.
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~-~p~-----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNR-YPF-----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CTT-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCC-----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 346789999999999888765542 232 112234678899999999999999999999999988765
No 126
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=80.94 E-value=21 Score=29.07 Aligned_cols=86 Identities=6% Similarity=-0.132 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhhhc-CCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHH
Q 021452 47 LKAAGSFLMKVFGVLA-GKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 47 le~~~~~i~~~f~~~~-~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
.++|...+.++....- .| ...++ .+-.+|+++|+++.+...+.. ++. .|. ....++..|.+
T Consensus 23 ~~~A~~~~~~al~~~~~~~----~~~~~---~~~~~~~~~~~~~~A~~~~~~al~~--~p~--------~~~~~~~l~~~ 85 (228)
T 4i17_A 23 YAVAFEKYSEYLKLTNNQD----SVTAY---NCGVCADNIKKYKEAADYFDIAIKK--NYN--------LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHHTTTCC----HHHHH---HHHHHHHHTTCHHHHHHHHHHHHHT--TCS--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCC----cHHHH---HHHHHHHHhhcHHHHHHHHHHHHHh--Ccc--------hHHHHHHHHHH
Confidence 3455555555554433 22 22222 267789999999999877653 432 121 34567889999
Q ss_pred hhHhcChHHHHHHHHHHHHhcCccc
Q 021452 125 EVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+...++|++|.+.+..|+...|.+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcH
Confidence 9999999999999999999888654
No 127
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=80.70 E-value=12 Score=35.39 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=58.9
Q ss_pred CchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhc--cCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHH
Q 021452 66 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIET--ARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 142 (312)
Q Consensus 66 sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~--~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 142 (312)
..+..+....+.+..+|...|+++-+..+.+ +++. ..+++ ...+..+-++-+|.+|..+|+|++|...+.+|+
T Consensus 323 ~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~----~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG----SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4577889999999999999999998887764 3332 12332 124566677889999999999999999999999
Q ss_pred H
Q 021452 143 I 143 (312)
Q Consensus 143 ~ 143 (312)
.
T Consensus 399 ~ 399 (429)
T 3qwp_A 399 D 399 (429)
T ss_dssp H
T ss_pred H
Confidence 8
No 128
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=80.09 E-value=7.4 Score=33.31 Aligned_cols=67 Identities=18% Similarity=0.038 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+-.+|.+.|+++.+...++..-.. .|. ....++..|.++...+++++|.+++..|+...|.+.
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVL-IPQ--------NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhh-Ccc--------chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 4446677899999999999887654332 122 135678899999999999999999999999887654
No 129
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=79.92 E-value=5.1 Score=28.94 Aligned_cols=35 Identities=9% Similarity=-0.126 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 115 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 115 v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+|.+|.+++..++|++|.++|..|++..|...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 41 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV 41 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 35678999999999999999999999999877654
No 130
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=79.77 E-value=5.3 Score=27.24 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 114 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 114 ~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
....++..|..++..++|++|..++..|+...|.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 45677889999999999999999999999987754
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=79.50 E-value=4.9 Score=35.15 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
...+-.+|+++|+++.+...++..-.. .|. ....+|..|..+...++|++|...|..|+...|.+
T Consensus 41 ~~~la~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 41 YTNRALCYLKMQQPEQALADCRRALEL-DGQ--------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTS-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 345667899999999998877643321 121 23567899999999999999999999999987754
No 132
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=79.33 E-value=25 Score=33.38 Aligned_cols=87 Identities=10% Similarity=-0.000 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHH
Q 021452 46 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
..++|.....++....-++ ....+.+-.+|+++++++.+...++ +++.. |. ....+|..|..
T Consensus 21 ~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~--------~~~~~~~lg~~ 83 (477)
T 1wao_1 21 DYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD--KK--------YIKGYYRRAAS 83 (477)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TT--------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHH
Confidence 4566666666666542222 2334456678999999999988775 44421 21 13567889999
Q ss_pred hhHhcChHHHHHHHHHHHHhcCccc
Q 021452 125 EVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+...++|++|.+.|..|++..|.+.
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999887654
No 133
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=78.61 E-value=31 Score=29.53 Aligned_cols=66 Identities=12% Similarity=-0.171 Sum_probs=49.6
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
+-.+|++.|+++.+...++..-.. .|. ........++..|.++...+++++|.+.+..|+...|.+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~-~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 305 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT-EPS----VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN 305 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CCS----SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CCC----chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 367799999999999888654432 132 122233456779999999999999999999999987654
No 134
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=77.66 E-value=17 Score=32.79 Aligned_cols=69 Identities=12% Similarity=-0.019 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
......+..+|.+.|+++.+...++..-.. .|. ....++..|.++...++|++|...+..|+...|.+.
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPD--------NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 446667788899999999998887654321 122 125678899999999999999999999999777653
No 135
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=77.62 E-value=17 Score=29.97 Aligned_cols=65 Identities=9% Similarity=-0.011 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+-..|++.|+++.+...++..-.. -|. ....++..|.++...+++++|...|..|+...|...
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKE-NPQ--------DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-SSS--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 34566789999999999887644321 132 135678999999999999999999999999888654
No 136
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=77.55 E-value=7.9 Score=32.26 Aligned_cols=66 Identities=9% Similarity=-0.132 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+-.+|++.|+++.+...++..-.. .|. ....++..|.+++..+++++|.+.+..|+...|...
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLEL-DPT--------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc-Ccc--------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 345567899999999999887644332 132 135778899999999999999999999999888654
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=77.22 E-value=5.7 Score=29.90 Aligned_cols=61 Identities=11% Similarity=-0.131 Sum_probs=45.0
Q ss_pred HHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 77 QLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
.+-.+|.+.|+++.+...++ +++.. |. ....++.+|.++...+++++|..+|..|+..-|.
T Consensus 56 ~lg~~~~~~g~~~~A~~~~~~al~l~--P~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 56 SLGLTQAENEKDGLAIIALNHARMLD--PK--------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 45567889999999987775 44431 32 1346789999999999999999999999987664
No 138
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=77.12 E-value=6.2 Score=29.08 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 112 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 112 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.+....++.+|.++...++|++|.++|..|+...|.+
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3456788999999999999999999999999987765
No 139
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=77.09 E-value=14 Score=32.25 Aligned_cols=64 Identities=13% Similarity=-0.069 Sum_probs=50.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+-..|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|...
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 132 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQ-DPK--------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH
Confidence 4567889999999999888654432 122 235678899999999999999999999999887644
No 140
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=76.66 E-value=34 Score=28.94 Aligned_cols=65 Identities=12% Similarity=-0.098 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
....+-.+|++.|+++.+...++..-.. .|. ....++..|.++...+++++|.+.+..|+...|.
T Consensus 208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 208 LWNKLGATLANGNRPQEALDAYNRALDI-NPG--------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 4456778899999999999887654321 122 1345688999999999999999999999998775
No 141
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.41 E-value=32 Score=30.70 Aligned_cols=185 Identities=13% Similarity=0.086 Sum_probs=87.0
Q ss_pred HHHHHhcCChhhHHHHHHHhhcc--C---C-CCCCCCCc---hhh---HHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 79 FKIYFKLGTVHLCRSVIRSIETA--R---I-FDFEEFPK---RDK---VTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik~i~~~--~---~-p~~~~~~~---~~~---v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
++.-|.-++++.|.++++.++.. . + |+.+.-+. .|. ..-+-..+++.+-.+|+.+=.++.++=...+.
T Consensus 11 l~~~~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~ 90 (274)
T 4b4t_T 11 LSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYF 90 (274)
T ss_dssp --------------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45556678899999999887653 1 1 22111111 111 12345677778888887654444443333332
Q ss_pred c--c---chHHHHHHHHHHHHHHhhcCCCCCchh-hhhhc-----h--hch----HHHHHHHHhCCHHHHHHHHHHchH-
Q 021452 147 P--Q---SEANIRMILKYLIPVKLSIGILPKDWL-LEKYN-----L--VEY----SNIVQALRRGDLRLLRHALEEHED- 208 (312)
Q Consensus 147 ~--~---~~~nk~~IL~yLIpv~Ll~G~~P~~~l-l~~y~-----l--~~y----~~L~~Avk~Gnl~~f~~~l~~~~~- 208 (312)
. . .+.|+-.++-|-+..-|..|+.+.+.. ++.-+ + .+| ..+-+|+-.||..+|=+.+.+...
T Consensus 91 d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p 170 (274)
T 4b4t_T 91 SNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQN 170 (274)
T ss_dssp TTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTC
T ss_pred hhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCC
Confidence 1 1 235777776555554444566665532 22111 1 122 567899999999999877776321
Q ss_pred -HHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCc
Q 021452 209 -QFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNL 282 (312)
Q Consensus 209 -~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~ 282 (312)
.....=+-.++.+.|.-..+...|. + .+||++.++.-|.+. +++|+...+. ..|.
T Consensus 171 ~~~~~~f~d~l~~~iR~~a~~~i~ka----Y--------~~i~l~~~~~~L~F~----s~~e~~~F~~---~~gW 226 (274)
T 4b4t_T 171 ISEFDSFTDILKSAIRDEIAKNTELS----Y--------DFLPLSNIKALLFFN----NEKETEKFAL---ERNW 226 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----C--------SSCCHHHHHHHHTCC----SHHHHHHHHH---HTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----H--------hhcCHHHHHHHhCCC----CHHHHHHHHH---HcCC
Confidence 1111111235677887777665552 3 679999999999873 6777766654 4564
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=76.30 E-value=27 Score=31.21 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCC-------chhhHHHHHHHHHHhhHhcChHHHHHHHHHHH
Q 021452 71 ALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFP-------KRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 142 (312)
Q Consensus 71 ~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~-------~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 142 (312)
.......+-..|++.++++.+...++ +++. .|....+. ....+..++.+|.+++..++|.+|.++++.|+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455667788999999999998775 4443 23321111 11235778889999999999999999999999
Q ss_pred HhcCccc
Q 021452 143 INCNPQS 149 (312)
Q Consensus 143 ~~c~~~~ 149 (312)
...|.+.
T Consensus 224 ~~~p~~~ 230 (336)
T 1p5q_A 224 ELDSNNE 230 (336)
T ss_dssp HHCTTCH
T ss_pred HhCCCcH
Confidence 9877543
No 143
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=75.91 E-value=14 Score=32.52 Aligned_cols=73 Identities=15% Similarity=-0.022 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 70 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 70 ~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+...+...+-.+|.+.|+++.+...++..-.. .|. ......++.+|.++...++|++|.+.+..|+...|.+.
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 247 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-NGD------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY 247 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHH-SCS------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-CcC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 45667778889999999999999888654432 122 11234668899999999999999999999999988654
No 144
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=75.86 E-value=19 Score=33.39 Aligned_cols=60 Identities=7% Similarity=-0.190 Sum_probs=28.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.+-.+|+..|+++.+...++..-.. .| . ...++..|.++...++|.+|.+.+..|+...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~-~~------~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL-HP------T---PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CC------C---HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc-CC------C---chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 3445566666666666555433221 01 1 12334444444444455555555554444444
No 145
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=75.73 E-value=17 Score=32.84 Aligned_cols=63 Identities=14% Similarity=-0.039 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
..+-..|++.|+++.+..+++.+-.. .|. ....++..|..++..+++++|...|..|+...|.
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDG-DPD--------NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 33444555566666555555433221 111 0334455555555555555555555555555443
No 146
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=75.49 E-value=3.5 Score=33.87 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 113 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 113 ~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
++-.++||+|.-++..+||.+|.++++.+++.=|.+
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 567899999999999999999999999999987753
No 147
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=75.04 E-value=18 Score=31.75 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhh--HhcChHHHHHHHHHHHHhcCcc
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV--FNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~--~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.....+..+|.++|+++.+...++.+.... |. . ..+....|.+.+ -.+++++|...|+.+...+|.+
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~------~--~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQD-ED------A--TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------C--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cC------c--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 345566778999999999998887655421 32 1 112222332222 2366777777777777776653
No 148
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=74.78 E-value=41 Score=29.76 Aligned_cols=30 Identities=13% Similarity=-0.095 Sum_probs=16.3
Q ss_pred HHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 117 YMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 117 y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.++.+|..++..+++++|.+.|..|+...|
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 98 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKP 98 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCc
Confidence 345555555555555555555555555444
No 149
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=74.71 E-value=16 Score=29.93 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=46.0
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHH----------------HHHHhhHhcChHHHHHHHHHHH
Q 021452 79 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYY----------------TGRLEVFNENFPAADQKLSYAL 142 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY----------------~G~~~~~~~~~~~A~~~L~~A~ 142 (312)
-..+++.|+++.+-..++..-.. .| . ....+|+ +|.++...++|++|...+..|+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~-~p------~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL-NI------D--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CH------H--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CC------C--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34678889999988877543321 12 1 1234555 9999999999999999999999
Q ss_pred HhcCccc
Q 021452 143 INCNPQS 149 (312)
Q Consensus 143 ~~c~~~~ 149 (312)
...|.+.
T Consensus 82 ~~~p~~~ 88 (208)
T 3urz_A 82 QKAPNNV 88 (208)
T ss_dssp HHCTTCH
T ss_pred HHCCCCH
Confidence 9888654
No 150
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=74.34 E-value=22 Score=33.52 Aligned_cols=74 Identities=11% Similarity=-0.000 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+.+..+|.+.|+++.+..+++.+-.. .|....-| ...+..++.+|..+...|++++|.+.+..++...|.+.
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLL-VKKTQSNE-KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHSCCCS-GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh-hhccccch-hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 4567788899999999999888755431 11111112 22356678899999999999999999999999876543
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=74.28 E-value=32 Score=27.50 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCch--------hhHHHHHHHHHHhhHhcChHHHHHHHHHHH
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKR--------DKVTYMYYTGRLEVFNENFPAADQKLSYAL 142 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~--------~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 142 (312)
......+-..|++.++++.+...++. ++. .|....+... -....++..|.+++..++|++|..++..|+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444566788999999999987754 432 1221111111 124677889999999999999999999999
Q ss_pred HhcCcc
Q 021452 143 INCNPQ 148 (312)
Q Consensus 143 ~~c~~~ 148 (312)
...|..
T Consensus 116 ~~~p~~ 121 (198)
T 2fbn_A 116 KIDKNN 121 (198)
T ss_dssp HHSTTC
T ss_pred HhCccc
Confidence 986644
No 152
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=73.94 E-value=4.3 Score=36.75 Aligned_cols=65 Identities=8% Similarity=0.009 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
+.+.+-.+|+++++++.|...++ +++.. |. ....+|..|..++..++|++|..+|..|+...|.+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--EK--------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 55677889999999999987665 44431 21 24567999999999999999999999999877653
No 153
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=73.33 E-value=22 Score=29.21 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=44.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.+-.+|.+.|+++.+...++..-..+ +....++.+|.++...+++++|.+.+..|+..-|.+.
T Consensus 123 ~lg~~~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 123 QRGLVYALLGERDKAEASLKQALALE----------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcc----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 45567888888888877665332211 1234567888888888888888888888888766543
No 154
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=73.25 E-value=16 Score=33.44 Aligned_cols=67 Identities=3% Similarity=-0.109 Sum_probs=51.5
Q ss_pred HHHHHHHHHHh---cCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFK---LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfk---l~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+-.+|++ .|+++.+...++..-.. .|. ....++..|.++...+++++|.+.|..|+...|.+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKL-DPR--------SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 44556678889 99999999887654332 122 135678899999999999999999999999888643
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=72.70 E-value=22 Score=27.70 Aligned_cols=65 Identities=8% Similarity=-0.112 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHH-hhHhcCh--HHHHHHHHHHHHhcCcc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL-EVFNENF--PAADQKLSYALINCNPQ 148 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~-~~~~~~~--~~A~~~L~~A~~~c~~~ 148 (312)
...+-.+|+..|+++.+...++..-.. .|. . ....+..|.+ ++..+++ ++|...|..|+...|.+
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~------~--~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQL-RGE------N--AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-HCS------C--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC------C--HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 344567788999999998877543321 122 1 3466778888 7888998 99999999999977654
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=71.19 E-value=33 Score=26.36 Aligned_cols=76 Identities=11% Similarity=-0.019 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH-Hhhcc------CCCCCCCC--CchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIR-SIETA------RIFDFEEF--PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik-~i~~~------~~p~~~~~--~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
.....-..||+.|+++.+-..++ +++.. ..|.-... .....+..++..|.+++..++|.+|..++..|+..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 33445567888999888876654 33321 01110000 03345567888999999999999999999999998
Q ss_pred cCccc
Q 021452 145 CNPQS 149 (312)
Q Consensus 145 c~~~~ 149 (312)
.|...
T Consensus 93 ~p~~~ 97 (162)
T 3rkv_A 93 EETNE 97 (162)
T ss_dssp STTCH
T ss_pred CCcch
Confidence 77543
No 157
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=70.65 E-value=24 Score=32.30 Aligned_cols=66 Identities=9% Similarity=-0.126 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
......+-.+|++.|+++.+...++..-.. .| . ...++..|.++...+++++|.+.+..++...|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~------~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 302 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIEL-FP------R---VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-CC------C---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-Cc------c---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC
Confidence 444455666777777777777666543221 01 1 334445555555555555555555555554443
No 158
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=70.50 E-value=26 Score=31.05 Aligned_cols=63 Identities=5% Similarity=-0.186 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
...+-.+|.+.++++.+...++. ++.. |. ....++..|..+...+++++|.+.+..|+..-|.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS--PN--------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--cC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34455666777777766655542 2221 21 1234456677777777777777777777765554
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=70.12 E-value=11 Score=26.47 Aligned_cols=34 Identities=6% Similarity=-0.128 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 115 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 115 v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..-++..|..++..++|.+|.+.+..|+...|.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 37 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN 37 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3456789999999999999999999999987754
No 160
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=69.75 E-value=17 Score=36.23 Aligned_cols=109 Identities=11% Similarity=0.117 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHH
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRM 155 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~ 155 (312)
..+-.+|++.|+++.+...++..-.. .|. -...+|+.|.+++..++|++|.++|+.|++.-|.+....
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~--- 504 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAER-VGW--------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPK--- 504 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-HCC--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHH---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcc-Ccc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH---
Confidence 34567889999999999877543321 132 135789999999999999999999999999888665321
Q ss_pred HHHHHHHHHhhcCCCCCchhhhhh----c--hhchHHHHHHH-HhCCHHH
Q 021452 156 ILKYLIPVKLSIGILPKDWLLEKY----N--LVEYSNIVQAL-RRGDLRL 198 (312)
Q Consensus 156 IL~yLIpv~Ll~G~~P~~~ll~~y----~--l~~y~~L~~Av-k~Gnl~~ 198 (312)
..+--+-.-.|++...+.+++- + ...|..+..+. +.|+..+
T Consensus 505 --~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 505 --LALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp --HHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence 1222223335877652222221 1 11355565544 6676644
No 161
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=69.37 E-value=22 Score=32.87 Aligned_cols=87 Identities=9% Similarity=0.004 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
.+.|...+.++....-++ .. ....+-.+|++.|+++.+...++..-.. .|. . ...++..|.++.
T Consensus 292 ~~~A~~~~~~~~~~~~~~----~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~------~--~~~~~~la~~~~ 355 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEY----PP---TYYHRGQMYFILQDYKNAKEDFQKAQSL-NPE------N--VYPYIQLACLLY 355 (537)
T ss_dssp CHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT------C--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCC----HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCC------C--HHHHHHHHHHHH
Confidence 455555566655443222 22 2344567788999999888877644332 122 1 145677888899
Q ss_pred HhcChHHHHHHHHHHHHhcCccc
Q 021452 127 FNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+++++|.+.|..|+...|.+.
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~ 378 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLP 378 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HcCCHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999998877654
No 162
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=69.19 E-value=9.7 Score=31.76 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=46.4
Q ss_pred HHHHHhcCChhhHHHH---HHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 79 FKIYFKLGTVHLCRSV---IRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~l---ik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.+..+..+.++-+..+ +.++... +.+..+..+..+-.+|.|-.++-+++|.+|...|..|+..+-
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~---~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNN---NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH---STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcC---CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 4444555555555543 3333322 123457888899999999999999999999999999999654
No 163
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=69.13 E-value=46 Score=29.29 Aligned_cols=73 Identities=8% Similarity=0.052 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 70 GALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 70 ~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
......+.+-.+|...|+++-+...+. +++.. +.. ...+.+..++..|+++...|++.+|..++..|....+.
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVL--SSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 344555667789999999999998775 34432 221 11224556778999999999999999999999986554
No 164
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=69.02 E-value=52 Score=31.37 Aligned_cols=63 Identities=10% Similarity=-0.004 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+-.+|.+.|+++.+...++. ++.. |. ....++.+|.++...+++++|.+.|+.|+...|.+
T Consensus 61 ~~lg~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 61 ARLGRVRWTQQRHAEAAVLLQQASDAA--PE--------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3445567777777777766543 3321 21 13455667777777777777777777777766543
No 165
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=68.95 E-value=10 Score=27.12 Aligned_cols=48 Identities=8% Similarity=0.207 Sum_probs=41.9
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEccC
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 299 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~ 299 (312)
.-+++++++.-++ +..+++..-+-.|..+|.|.|.|+-..+++=+|..
T Consensus 20 Kvv~LedLA~~F~-----l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 20 KVVLLEDLAFQMG-----LRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp SEECHHHHHHHHC-----SCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred CeeeHHHHHHHhC-----CChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 5689999998888 57889999999999999999999998888777764
No 166
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=68.48 E-value=13 Score=26.99 Aligned_cols=33 Identities=24% Similarity=0.091 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..++.+|.+++..++|++|...|..|+...|..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 567889999999999999999999999976654
No 167
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=68.42 E-value=54 Score=29.66 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=75.1
Q ss_pred HHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhh-cCCCCCchhhhhhc-hh-c----hHHHHHH
Q 021452 118 MYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS-IGILPKDWLLEKYN-LV-E----YSNIVQA 190 (312)
Q Consensus 118 ~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll-~G~~P~~~ll~~y~-l~-~----y~~L~~A 190 (312)
+|=.|+.++.++++-.|+++.-.|+.+ |-=..++ .|..|+...|.+-. +. . |.+|+.
T Consensus 133 ~y~~~K~~l~~~~~ldAY~~vi~aLhh---------------~ArL~vie~G~~pe~tvw~qv~~i~~~iyKLyeEL~~- 196 (290)
T 3c18_A 133 RFQDGRNLFSRGNYYDAYTHVHHALHH---------------LARLSVLEKGAHPEVVVWEQARLDDPDVYKLYEQLLL- 196 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHHHHHHTTCCCCTTHHHHHHHHCHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHH---------------HHHhheeccCCcCchhHHHHHHhcCHHHHHHHHHHhc-
Confidence 355899999999999999999999997 2222334 69999999998742 22 1 333332
Q ss_pred HHhCCHHHHHHHHHHchHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHH
Q 021452 191 LRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEV 270 (312)
Q Consensus 191 vk~Gnl~~f~~~l~~~~~~f~~~glylllerlr~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~ev 270 (312)
..-++.+=-+-+=-.-++++. .+.+..+ +-...... .+..-.++.++..-..+.. =.-++
T Consensus 197 -s~E~lekrielllla~Ef~I~-------sk~~~~~-----~~Ll~~m~----ek~~~wS~~Ei~~~p~~~~---~~idl 256 (290)
T 3c18_A 197 -SEETLEQRIHLALIGLEHLLQ-------SKVLSGG-----KYLFEVMR----ERDRPWTMHELMEESRLTE---LKVDL 256 (290)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHH-------HTHHHHH-----HHHHHHHT----TSSSCEEHHHHHHCGGGGG---GHHHH
T ss_pred -CcccHHHHHHHHHHHHHHHHH-------HHHHHHH-----HHHHHHHH----hcCCCCCHHHHhcCccccc---ccCCH
Confidence 122221111111111122222 2333222 11111111 1345677777765433321 24578
Q ss_pred HHHHHHhHHcCcceEE
Q 021452 271 ECIVAILIHKNLVKGY 286 (312)
Q Consensus 271 E~ila~LI~~G~IkGy 286 (312)
|-++-.|+.+|+|+=.
T Consensus 257 e~iL~~Lv~k~lI~~~ 272 (290)
T 3c18_A 257 GSLVDFFIRKGLIRIS 272 (290)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEe
Confidence 9999999999999743
No 168
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=67.33 E-value=16 Score=33.50 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhhhcCCC--CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhc-c-CCCCCCCCCchhhHHHHHHHHH
Q 021452 48 KAAGSFLMKVFGVLAGKG--SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIET-A-RIFDFEEFPKRDKVTYMYYTGR 123 (312)
Q Consensus 48 e~~~~~i~~~f~~~~~d~--sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~-~-~~p~~~~~~~~~~v~y~YY~G~ 123 (312)
++|-+.+.++......+. .-........+.+-.+|+.+|+++.+...+..... . ..+. .+ ..+....+...|.
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~--~~-~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS--PY-RIESPELDCEEGW 144 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--SS-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc--cc-chhhHHHHHHHHH
Confidence 445555555554443221 11223344556778899999999999877653322 1 1111 11 1122233344554
Q ss_pred H--hhHhcChHHHHHHHHHHHHhcCccc
Q 021452 124 L--EVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 124 ~--~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
. ++-.++|++|.++|+.|+...|.+.
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 4 4456789999999999999888654
No 169
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=67.26 E-value=4.2 Score=29.92 Aligned_cols=56 Identities=9% Similarity=0.076 Sum_probs=40.0
Q ss_pred HHhcCC--hhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 82 YFKLGT--VHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 82 Yfkl~~--~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
|+.-+. .+.+..+++ ++... | . -++=.+++|..++.+++|.+|..+++.++..-|.
T Consensus 17 ~~~~~~~~~~~A~~~l~~AL~~d--p------~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 17 YYLHKQAMTDEVSLLLEQALQLE--P------Y--NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHTTTTCCCHHHHHHHHHHHHHC--T------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHhcCCCCCHHHHHHHHHHHHHC--c------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 444443 456666554 44431 2 1 2355688899999999999999999999998777
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=66.98 E-value=23 Score=30.68 Aligned_cols=65 Identities=9% Similarity=-0.226 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 76 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 76 n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+-..|++.|+++.+...++..-.. .|. ...+++..|.++...++|++|.+.+..|+...|.+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITR-NPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 34456789999999999887643321 132 246788999999999999999999999999877543
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=64.89 E-value=49 Score=31.01 Aligned_cols=76 Identities=9% Similarity=-0.123 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCC-------chhhHHHHHHHHHHhhHhcChHHHHHHHHHHH
Q 021452 71 ALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFP-------KRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 142 (312)
Q Consensus 71 ~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~-------~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 142 (312)
.......+-..|++.++++.+...++ +++.. |....+. .......++.+|.+++..++|.+|..+++.|+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34455667788999999999987775 44432 3211111 12236778889999999999999999999999
Q ss_pred HhcCcc
Q 021452 143 INCNPQ 148 (312)
Q Consensus 143 ~~c~~~ 148 (312)
...|.+
T Consensus 345 ~~~p~~ 350 (457)
T 1kt0_A 345 GLDSAN 350 (457)
T ss_dssp HHSTTC
T ss_pred hcCCcc
Confidence 987754
No 172
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=64.57 E-value=59 Score=26.78 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHH
Q 021452 45 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 45 ~~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
..|+++.++-.+++...-.+..+.|--|..+=.-+-.|..+++++-|+.+++..-+. -..| ....---+.+
T Consensus 33 ~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~----hKkF-----AKiwi~~AqF 103 (161)
T 4h7y_A 33 ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN----CKKF-----AFVHISFAQF 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH----CTTB-----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hHHH-----HHHHHHHHHH
Confidence 567777788888888776665667777776666677788999999999999876432 1223 2222333566
Q ss_pred hhHhcChHHHHHHHHHHHHhcCccc
Q 021452 125 EVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
-..+++..+|.+-|..|+..||+..
T Consensus 104 EiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 104 ELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHcccHHHHHHHHHHHhccCCCcH
Confidence 7789999999999999999999754
No 173
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=63.67 E-value=35 Score=32.58 Aligned_cols=67 Identities=10% Similarity=-0.046 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
....+-.+|++.|+++.+...++..-.. .|. ....++.+|.++...++|++|.++++.|+...|.+.
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 91 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLAL-HPG--------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP 91 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTT-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 3445567888999999999877643321 122 145678899999999999999999999999877653
No 174
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=63.03 E-value=8.9 Score=27.50 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=25.8
Q ss_pred HHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 121 TGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 121 ~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.|.-.+.+|++++|-.||..|+.-|+...
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 67778899999999999999999999643
No 175
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=60.89 E-value=32 Score=32.43 Aligned_cols=65 Identities=12% Similarity=0.000 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHh---------cChHHHHHHHHHHHHhc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN---------ENFPAADQKLSYALINC 145 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~---------~~~~~A~~~L~~A~~~c 145 (312)
.+.+-.+|++.|+++.+...++..-.. .|. ...++.+|.++... ++|++|.+.+..|+...
T Consensus 140 ~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 140 WNQLGEVYWKKGDVTSAHTCFSGALTH-------CKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT-------CCC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 345566778888888887766533221 133 26788999999999 99999999999999988
Q ss_pred Cccc
Q 021452 146 NPQS 149 (312)
Q Consensus 146 ~~~~ 149 (312)
|.+.
T Consensus 210 p~~~ 213 (474)
T 4abn_A 210 VLDG 213 (474)
T ss_dssp TTCH
T ss_pred CCCH
Confidence 8755
No 176
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=60.70 E-value=40 Score=31.08 Aligned_cols=66 Identities=8% Similarity=-0.082 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhcC-hHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNEN-FPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~-~~~A~~~L~~A~~~c~~~~ 149 (312)
..+.+-.+|.+.++++-+-..++. ++. .|. -.+.+++.|.++...++ |++|.+++..|+...|.+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~--------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAA--------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT--------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--Ccc--------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 344455667888888887776653 332 132 13566778888887775 8888888888888777543
No 177
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=58.48 E-value=37 Score=34.41 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.+.+=.+|.+.|+++.+...++ +++-. |. ....++.+|.++...++|++|.++|++|++..|..
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~--------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~ 76 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVF--PE--------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 76 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3455667778888887776664 44431 32 12455667777777777777777777777766644
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=55.51 E-value=77 Score=28.81 Aligned_cols=76 Identities=8% Similarity=-0.057 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCC---CCCC--CCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIF---DFEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~-~~p---~~~~--~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
.....+-..|++.++++.+...++ +++-. ..| .... -........++.+|.+++..++|++|.++++.|+...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 345556678999999999887664 34310 000 0000 0123345677889999999999999999999999977
Q ss_pred Ccc
Q 021452 146 NPQ 148 (312)
Q Consensus 146 ~~~ 148 (312)
|..
T Consensus 304 p~~ 306 (370)
T 1ihg_A 304 PSN 306 (370)
T ss_dssp TTC
T ss_pred chh
Confidence 654
No 179
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=54.69 E-value=17 Score=28.78 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 112 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 112 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
.++-.|+||+|.-+.--++|.+|...+...++.=|.+
T Consensus 71 ~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 71 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 3677899999999999999999999999999987743
No 180
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=54.19 E-value=58 Score=29.97 Aligned_cols=66 Identities=11% Similarity=-0.115 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCC-hhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 74 LTCQLFKIYFKLGT-VHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~-~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
..+.+-.+|.++|+ ++-+-..++ +++.. |. . ...+++.|.++...++|++|...+..|+..-|.+.
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~------~--~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~ 200 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PK------N--YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TT------C--HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CC------C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence 34455667888997 888877665 34421 32 1 35678899999999999999999999999888654
No 181
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=54.09 E-value=16 Score=27.61 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=25.3
Q ss_pred HHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 121 TGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 121 ~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
+|.-.+.+|+++.|-.||..|+.-|+..
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 6777889999999999999999999963
No 182
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=51.68 E-value=77 Score=26.36 Aligned_cols=57 Identities=12% Similarity=-0.046 Sum_probs=33.9
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhH----hcChHHHHHHHHHHHHhc
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALINC 145 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~----~~~~~~A~~~L~~A~~~c 145 (312)
+-.+|++.++++.+...++..-. |. . ..-.|.+|.++.. .+++++|.++|..|...-
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~---~~---~-----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACD---LK---E-----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---TT---C-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH---CC---C-----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 34566677777777666543221 11 0 1234667777777 777777777777777653
No 183
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=51.29 E-value=20 Score=24.47 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=29.7
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcce
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~Ik 284 (312)
-.+.++.|+..+. ++.|||-.+|.+|-.+|+|+
T Consensus 24 GildI~~~a~kyg-----V~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 24 GFLDIEHFSKVYG-----VEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp SEEEHHHHHHHHC-----CCHHHHHHHHHHHHHTTSEE
T ss_pred CEEeHHHHHHHhC-----CCHHHHHHHHHHHHHCCCee
Confidence 4688999998887 78999999999999999986
No 184
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=50.73 E-value=32 Score=23.74 Aligned_cols=30 Identities=17% Similarity=-0.096 Sum_probs=26.7
Q ss_pred HHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 119 YYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 119 YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
|-.|..++..++|++|.+.+..|+...|.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 567899999999999999999999987754
No 185
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=49.65 E-value=70 Score=32.37 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHH
Q 021452 46 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 124 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~ 124 (312)
..++|.....++...--++ .. ..+.+-.+|.++|+++.+...++ +++-. |. ....++.+|.+
T Consensus 24 ~~~eAi~~~~kAl~l~P~~----~~---a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~--------~~~a~~nLg~~ 86 (723)
T 4gyw_A 24 NIEEAVRLYRKALEVFPEF----AA---AHSNLASVLQQQGKLQEALMHYKEAIRIS--PT--------FADAYSNMGNT 86 (723)
T ss_dssp CHHHHHHHHHHHHHHCSCC----HH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC----HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHH
Confidence 4556666666655432121 22 23455677899999999987765 45532 32 13567889999
Q ss_pred hhHhcChHHHHHHHHHHHHhcCccc
Q 021452 125 EVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 125 ~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
+...+++++|.++++.|++..|...
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~ 111 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFA 111 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999877654
No 186
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=47.65 E-value=73 Score=24.75 Aligned_cols=32 Identities=9% Similarity=-0.348 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
..+|..|.++...|++++|...|..+++..|.
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 56788999999999999999999999998775
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=47.10 E-value=69 Score=28.59 Aligned_cols=57 Identities=14% Similarity=-0.075 Sum_probs=43.6
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 81 IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 81 ~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
+|++.+.++-+...+..... .| +......-+||+|..+...|++++|..+|+.|...
T Consensus 144 l~~~~~r~~dA~~~l~~a~~--~~-----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGK--WP-----DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGG--CS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHhhc--cC-----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 89999999999988862221 11 12222346799999999999999999999999753
No 188
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=46.60 E-value=2e+02 Score=27.40 Aligned_cols=96 Identities=7% Similarity=-0.013 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHH
Q 021452 73 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEAN 152 (312)
Q Consensus 73 ~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~n 152 (312)
...|.++..|.+.|+++.+..+++.|....+. | +.++|.--.. .++-.+++++|.+.|..-..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-----P--d~~tyn~lI~-~~~~~g~~~~A~~l~~~M~~--------- 168 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-----P--RLRSYGPALF-GFCRKGDADKAYEVDAHMVE--------- 168 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-----C--CHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----C--ccceehHHHH-HHHHCCCHHHHHHHHHHHHh---------
Confidence 35688999999999999999999988875432 1 2344432221 14566788777765544222
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhhhhchhchHHHHHHH-HhCCHHHHHHHHHHch
Q 021452 153 IRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQAL-RRGDLRLLRHALEEHE 207 (312)
Q Consensus 153 k~~IL~yLIpv~Ll~G~~P~~~ll~~y~l~~y~~L~~Av-k~Gnl~~f~~~l~~~~ 207 (312)
.|..|+.. .|.-|+.++ +.|++.+-.+.+++-+
T Consensus 169 --------------~G~~Pd~~--------ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 169 --------------SEVVPEEP--------ELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp --------------TTCCCCHH--------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------cCCCCCHH--------HHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 35555532 466666554 7788877777776643
No 189
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.50 E-value=87 Score=27.11 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=33.2
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 79 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
-.+|.+.|+++.+-..++. | .....++-.|.+++..|++++|.+.|..+....|.
T Consensus 108 a~~~~~~g~~~~Al~~l~~------~--------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 162 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ------G--------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT------C--------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCHHHHHHHHhC------C--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence 3455566666666555442 1 11234556677777777777777777777776554
No 190
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=45.15 E-value=1.7e+02 Score=26.33 Aligned_cols=121 Identities=14% Similarity=0.091 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCc--hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc-
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPK--RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ- 148 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~--~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~- 148 (312)
+.++..-+.+.-.-+++.-+-.++.-+... +|. +..+-|. .++..|+|.+|++.|....+..|.-
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~-------~p~~~~~~lLln-----~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQT-------FPTWKTQLGLLN-----LHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-------SCSHHHHHHHHH-----HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHh-------CCCcccHHHHHH-----HHHHcCCHHHHHHHHHHHHHhccccc
Confidence 333333333333333788887777766532 232 2223233 7999999999999999666654320
Q ss_pred -c---hHHHHHHHHHHHHHHhhcCCCCCchhhhhh-chhchHHHHHHHHhCCHHHHHHHHHHc
Q 021452 149 -S---EANIRMILKYLIPVKLSIGILPKDWLLEKY-NLVEYSNIVQALRRGDLRLLRHALEEH 206 (312)
Q Consensus 149 -~---~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~y-~l~~y~~L~~Avk~Gnl~~f~~~l~~~ 206 (312)
. ..+--..|.-+|.++..+|+ +..+++++- .+.|=.|++.-+..-+ ..|++++.++
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL~~~~P~hp~i~d~~~k~-~~Fd~~~~ky 306 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL-DTEDLTNQLVKLDHEHAFIKHHQEID-AKFDELVRKY 306 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHHHHTTCCCHHHHHHHHHH-HHHHHHHHTC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHHHHhCCCChHHHHHHHHH-HHHHHHHHHh
Confidence 0 01123446678888999998 665665542 2334455555554443 3677777665
No 191
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=45.08 E-value=26 Score=32.00 Aligned_cols=71 Identities=6% Similarity=-0.040 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHH-HHhhcc-CCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVI-RSIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~li-k~i~~~-~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
+.|.+-.+|+..|+++-+-..+ ++++-. .... +... ...+.-+.-.|.+|...|+|++|...+..|...++
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-~~~~-~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-DQAE-IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-GGCT-TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-cccc-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 3477788999999999886554 454421 0000 0111 12233346689999999999999999999988544
No 192
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=44.58 E-value=14 Score=25.74 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=23.1
Q ss_pred hhhcCCC--CchhHHHH-HHHHHHHHHHhcC
Q 021452 59 GVLAGKG--SKRVGALY-LTCQLFKIYFKLG 86 (312)
Q Consensus 59 ~~~~~d~--sKk~~~~~-~~n~l~k~Yfkl~ 86 (312)
..|.+|+ +-|||+|. +.-.++|.|+|+.
T Consensus 10 eicktdgipnikwgmyiafgekllksylkmk 40 (82)
T 3fbl_A 10 EICKTDGIPNIKWGMYIAFGEKLLKSYLKMK 40 (82)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 3688884 88999976 7778999999874
No 193
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=44.57 E-value=35 Score=24.78 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeC
Q 021452 231 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 290 (312)
Q Consensus 231 ~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~ 290 (312)
++.+|... +..+.-.|+...+..++...+...+.++++.++..+=.+| .|.|+..
T Consensus 34 l~~~F~~~---D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~--dg~i~~~ 88 (107)
T 2d58_A 34 FKEKYMEF---DLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGS--GETFSYP 88 (107)
T ss_dssp HHHHHTTS---CCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSS--SSEECHH
T ss_pred HHHHHHHH---CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCeEcHH
Confidence 45555543 3344568999999999987777788999999887653333 4566543
No 194
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.47 E-value=35 Score=27.42 Aligned_cols=37 Identities=3% Similarity=0.083 Sum_probs=33.2
Q ss_pred CCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEE
Q 021452 245 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 286 (312)
Q Consensus 245 ~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 286 (312)
+..++|+.+++..+. ++...+-.-+..|..+|+|+||
T Consensus 14 ~~~~~s~~~la~~lg-----~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 14 EDSTLAVADLAKKVG-----LSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp TCSCSCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSSCCC
T ss_pred HCCCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeeec
Confidence 346899999999998 6899999999999999999986
No 195
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=44.14 E-value=29 Score=24.59 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 287 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 287 (312)
.+++..+++..+. ++...|...|.+|..+|+|.+.-
T Consensus 30 ~~~t~~eLA~~Lg-----vs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 30 KATTAHDLSGKLG-----TPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp SCEEHHHHHHHHC-----CCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEecC
Confidence 3799999999998 67889999999999999998754
No 196
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=43.56 E-value=45 Score=26.09 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhH-hcChHHHHHHHHHHHHhcCccc
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF-NENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~-~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
...+-.+|.+.|+++.+...++.+-.. .| .. .+....|.+.+. +.+..+|.+.|..|+...|.+.
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a~~~-------~p-~~--~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~ 108 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATIPLE-------YQ-DN--SYKSLIAKLELHQQAAESPELKRLEQELAANPDNF 108 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCGG-------GC-CH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhhc-------cC-Ch--HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCH
Confidence 344567789999999999887654321 12 11 234444555433 3455678999999999888654
No 197
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=42.84 E-value=51 Score=23.53 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 285 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG 285 (312)
.++++++++..|. ++.+-|...|..|..+|+|+=
T Consensus 15 g~vsv~eLa~~l~-----VS~~TIRrdL~~Le~~G~l~R 48 (78)
T 1xn7_A 15 GRMEAAQISQTLN-----TPQPMINAMLQQLESMGKAVR 48 (78)
T ss_dssp CSBCHHHHHHHTT-----CCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCcHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEE
Confidence 5799999999988 789999999999999999854
No 198
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=42.61 E-value=61 Score=30.64 Aligned_cols=59 Identities=15% Similarity=-0.011 Sum_probs=45.8
Q ss_pred HHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 81 IYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 81 ~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.|++.++++.+...++ +++.. |. ....++..|..+...++|++|.+.++.|++..|...
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--Cc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 5678888888887765 44431 22 156778999999999999999999999999877543
No 199
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=41.88 E-value=33 Score=27.40 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccc
Q 021452 112 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 112 ~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.++-.|.||++.-+.--++|.+|..+....++.-|.+.
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 44668999999999999999999999999999877543
No 200
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.23 E-value=1.3e+02 Score=23.33 Aligned_cols=87 Identities=17% Similarity=0.328 Sum_probs=57.8
Q ss_pred HHHHhCCHHHHHHHHHHc-----hHHHHHhcHHHHHHhh---HHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhh
Q 021452 189 QALRRGDLRLLRHALEEH-----EDQFLRSGVYLVLEKL---ELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKW 260 (312)
Q Consensus 189 ~Avk~Gnl~~f~~~l~~~-----~~~f~~~glylllerl---r~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~ 260 (312)
+-+..||+...-+++++. ...|++..+-..+++- ..-.+-.|++..+. ...|+-+++..++..
T Consensus 16 EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~---------~~~is~~q~~~Gf~~ 86 (129)
T 2nsz_A 16 EYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK---------SSTITIDQMKRGYER 86 (129)
T ss_dssp HHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH---------TTCSCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH---------CCCcCHHHHHHHHHH
Confidence 345779999999999873 3568888888888853 12233345554321 357899999988764
Q ss_pred ccC-------C--CCHHHHHHHHHHhHHcCcce
Q 021452 261 LEM-------D--MDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 261 ~~~-------~--~~~~evE~ila~LI~~G~Ik 284 (312)
.-. | --.+-+..+++.+|.+|.+.
T Consensus 87 v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 87 IYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred HHhhChHhhcCccchHHHHHHHHHHHHHCCCCC
Confidence 311 1 12456788899999998774
No 201
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=38.69 E-value=1.2e+02 Score=26.84 Aligned_cols=75 Identities=11% Similarity=-0.139 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCC---------chhhHHHHHHHHHHhhHhcChHHHHHHHHHH
Q 021452 72 LYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFP---------KRDKVTYMYYTGRLEVFNENFPAADQKLSYA 141 (312)
Q Consensus 72 ~~~~n~l~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~---------~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A 141 (312)
......+-..|++.++++.+...++. ++.. |....+. .......++.+|.+++..++|.+|..+++.|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33445666788899999988876653 4421 2100000 0001136788999999999999999999999
Q ss_pred HHhcCcc
Q 021452 142 LINCNPQ 148 (312)
Q Consensus 142 ~~~c~~~ 148 (312)
+...|.+
T Consensus 257 l~~~p~~ 263 (338)
T 2if4_A 257 LTEEEKN 263 (338)
T ss_dssp HHHCTTC
T ss_pred HHhCCCC
Confidence 9987754
No 202
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=38.65 E-value=47 Score=25.93 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 286 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 286 (312)
.+++.++++..+. ++...+-..+..|..+|+|+++
T Consensus 18 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 18 SRLSMRELGRKIK-----LSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp SCCCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEEE
Confidence 5799999999998 6899999999999999999986
No 203
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=38.02 E-value=42 Score=22.89 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 285 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG 285 (312)
..++.++++..+. ++...|..+++.|..+|+|..
T Consensus 24 ~~~s~~eLA~~lg-----lsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQ-----VPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHC-----SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCcEec
Confidence 4589999999988 689999999999999999853
No 204
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=38.00 E-value=79 Score=23.66 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEee
Q 021452 232 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 289 (312)
Q Consensus 232 kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh 289 (312)
+.+|... +..+.-.|+.+.+..++.-.+..++.++++.++..+ +| .|+|+.
T Consensus 87 ~~~F~~~---D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~--dg~i~~ 137 (146)
T 2qac_A 87 IKMFAHF---DNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF--SS--EDNIDY 137 (146)
T ss_dssp HHHHHTT---CTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH--CS--SSEEEH
T ss_pred HHHHHHh---CCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc--CC--CCcCcH
Confidence 4444443 223456799999999998766678999999999887 33 566664
No 205
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=37.13 E-value=58 Score=23.88 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 287 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 287 (312)
.++++++++..|. ++.+-|...|..|..+|+|+=.-
T Consensus 15 g~vsv~eLA~~l~-----VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 15 GRMEAKQLSARLQ-----TPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp CSEEHHHHHHHTT-----CCHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEEe
Confidence 5799999999988 78999999999999999997664
No 206
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=37.09 E-value=1.8e+02 Score=24.01 Aligned_cols=58 Identities=12% Similarity=-0.083 Sum_probs=33.0
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhH----hcChHHHHHHHHHHHHh
Q 021452 75 TCQLFKIYFK----LGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALIN 144 (312)
Q Consensus 75 ~n~l~k~Yfk----l~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~----~~~~~~A~~~L~~A~~~ 144 (312)
...+-.+|.+ .++++.+...++. ++.. + ..-.+.+|.++.. .+++++|.++|..|...
T Consensus 113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~----------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D----------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--c----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 3344556666 7777777665543 3311 0 1234556666665 66677777766666665
No 207
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=36.31 E-value=20 Score=28.49 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=28.2
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcce
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~Ik 284 (312)
.-.+.+.++.++. ++..+|..++.+|+.+|+|.
T Consensus 50 ~~ps~~~LA~~~~-----~s~~~v~~~L~~L~~KGlI~ 82 (135)
T 2v79_A 50 YFPTPNQLQEGMS-----ISVEECTNRLRMFIQKGFLF 82 (135)
T ss_dssp CSCCHHHHHTTSS-----SCHHHHHHHHHHHHHHTSCE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEE
Confidence 4467788887766 68999999999999999996
No 208
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=35.52 E-value=66 Score=25.83 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCC
Q 021452 232 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 291 (312)
Q Consensus 232 kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~ 291 (312)
+.+|... +..+.-.|+.+.+..++.-.+...+++|++.++... ++| .|.|+.+.
T Consensus 87 ~~aF~~f---D~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~-dd~--dG~I~~~E 140 (176)
T 2lhi_A 87 LEAFKVF---DKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV-SDG--SGEINIQQ 140 (176)
T ss_dssp HHHHHHH---CSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHH-HTT--SSCBCTTH
T ss_pred HHHHHHh---CCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhh-cCC--CCeEeHHH
Confidence 4445444 223456799999999998777778999999998765 566 78888765
No 209
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=35.51 E-value=49 Score=25.98 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 287 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 287 (312)
.++++++++..+. ++...+-..+..|..+|+|+++-
T Consensus 21 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 21 ARTAYAELAKQFG-----VSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp TTSCHHHHHHHHT-----SCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHcCCcceEE
Confidence 5799999999998 68999999999999999999853
No 210
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=35.46 E-value=53 Score=26.15 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 287 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 287 (312)
.+++.++++..+. ++...+-..+..|..+|+|+++-
T Consensus 23 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 23 GRLTNVELSERVA-----LSPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEeeec
Confidence 4689999999998 68899999999999999999864
No 211
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=34.34 E-value=1e+02 Score=25.06 Aligned_cols=33 Identities=6% Similarity=0.038 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 115 VTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 115 v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
.....-.|..++..++|++|.+.++.|+...|.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~ 43 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT 43 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 445677899999999999999999999998886
No 212
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=34.20 E-value=24 Score=20.24 Aligned_cols=16 Identities=0% Similarity=0.140 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhh
Q 021452 46 KLKAAGSFLMKVFGVL 61 (312)
Q Consensus 46 ~le~~~~~i~~~f~~~ 61 (312)
.-|.||.+|+++|+.-
T Consensus 4 ~Ee~aA~vIQrA~R~y 19 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRY 19 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3477999999999843
No 213
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.69 E-value=1.4e+02 Score=28.12 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHH
Q 021452 75 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 142 (312)
Q Consensus 75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~ 142 (312)
.-.|.++|+.-|++.-+..++..+... .....++.+.+.|..-.-|+++-.+||.+|...+..|-
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVE---TYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456789999999999999999987642 12345788999999999999999999999999988864
No 214
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=33.29 E-value=44 Score=27.32 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhHhcChHHHHHHHHHHHHhcC
Q 021452 116 TYMYYTGRLEVFNENFPAADQKLSYALINCN 146 (312)
Q Consensus 116 ~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~ 146 (312)
.-.|.+|.++...+++++|.++|..|...-+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~ 49 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQGD 49 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 4568899999999999999999999988533
No 215
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=32.81 E-value=61 Score=26.34 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 287 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 287 (312)
.++|.++++..+. ++...+-..+..|..+|+|+++-
T Consensus 30 ~~~s~~eLA~~lg-----lS~~tv~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 30 ARLTISELSEQLK-----KPESTIHFRIKKLQERGVIERYT 65 (171)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEeec
Confidence 4799999999998 68999999999999999998864
No 216
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=32.57 E-value=52 Score=25.74 Aligned_cols=35 Identities=6% Similarity=0.199 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 286 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 286 (312)
.+++.++++..+. ++...+-..+..|..+|+|+++
T Consensus 22 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 22 SRLTYRELADILN-----TTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp TTCCHHHHHHHTT-----SCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEE
Confidence 5799999999988 6889999999999999999876
No 217
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=32.52 E-value=1e+02 Score=20.76 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEee
Q 021452 231 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 289 (312)
Q Consensus 231 ~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh 289 (312)
++.+|... +..+.-.|+...+..++...+...+.++++.++..+=.+| .|+|+.
T Consensus 16 l~~~F~~~---D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~--~g~i~~ 69 (85)
T 2ktg_A 16 YKEAFQLF---DKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDN--SGKFDQ 69 (85)
T ss_dssp HHHHHHHT---CTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSSS--CSEEEH
T ss_pred HHHHHHHH---CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCcH
Confidence 34555554 2234567999999999987776788999998887552222 455554
No 218
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=31.83 E-value=63 Score=26.11 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCcc
Q 021452 113 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 113 ~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
++-.|.||++.=+.-.++|.+|..+....++.=|.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 466799999999999999999999999999977753
No 219
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=31.44 E-value=91 Score=26.77 Aligned_cols=62 Identities=5% Similarity=-0.152 Sum_probs=46.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
.+-..+.+.|+++.+...++..-.. -|. . ...++-+|.+++..+++++|.+.|..+...-|.
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~-~P~------~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQL-SNQ------N--GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-TTS------C--HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh-CCc------c--hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 4556778899999998887654322 132 1 356788999999999999999999999887663
No 220
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.32 E-value=2e+02 Score=22.95 Aligned_cols=87 Identities=18% Similarity=0.349 Sum_probs=57.7
Q ss_pred HHHHhCCHHHHHHHHHHc-----hHHHHHhcHHHHHHhh--H-HHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhh
Q 021452 189 QALRRGDLRLLRHALEEH-----EDQFLRSGVYLVLEKL--E-LQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKW 260 (312)
Q Consensus 189 ~Avk~Gnl~~f~~~l~~~-----~~~f~~~glylllerl--r-~lv~r~L~kkv~~~~~~~~~~~~~~I~l~~i~~al~~ 260 (312)
+-+..||+...-+++++. ...|++..+-..+++- + .-.+-.|+...+ +...|+-+++..++..
T Consensus 18 EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~---------~~~~is~~q~~~Gf~~ 88 (152)
T 2ion_A 18 EYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW---------KSSTITIDQMKRGYER 88 (152)
T ss_dssp HHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH---------HTTCSCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH---------HCCCcCHHHHHHHHHH
Confidence 344779999999999873 3578888888888863 1 122334444332 1357899999888764
Q ss_pred ccC-------C--CCHHHHHHHHHHhHHcCcce
Q 021452 261 LEM-------D--MDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 261 ~~~-------~--~~~~evE~ila~LI~~G~Ik 284 (312)
.-. | --.+-+..+++.+|.+|.+.
T Consensus 89 vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~ 121 (152)
T 2ion_A 89 IYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 121 (152)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred HHHhChHhccCccchHHHHHHHHHHHHHCCCCC
Confidence 311 1 12457788999999999873
No 221
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=31.31 E-value=73 Score=22.81 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=30.1
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcce
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~Ik 284 (312)
.+++..+++..|. ++...|...|..|..+|+|.
T Consensus 26 ~~~t~~eLA~~Lg-----vsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 26 KATTAHDLSGKLG-----TPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp CCBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEE
Confidence 4799999999998 67889999999999999995
No 222
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=30.39 E-value=38 Score=25.76 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHhHHcCcceEEEe
Q 021452 265 MDVDEVECIVAILIHKNLVKGYFA 288 (312)
Q Consensus 265 ~~~~evE~ila~LI~~G~IkGyIs 288 (312)
++.+....++..|+++|+|+|.--
T Consensus 28 Ise~~~~~il~~L~d~GyI~Gv~~ 51 (102)
T 2hgc_A 28 VTEDQFDDAVNFLKREGYIIGVHY 51 (102)
T ss_dssp SCHHHHHHHHHHHHHHTSEECCEE
T ss_pred CCHHHHHHHHHHHHHCCCccceEE
Confidence 789999999999999999999643
No 223
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=30.17 E-value=69 Score=23.41 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=31.5
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHh
Q 021452 232 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAIL 277 (312)
Q Consensus 232 kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~L 277 (312)
|.+|... +..+.-.|+.+.+..++...|...+.+|++.++..+
T Consensus 39 ~~~F~~~---D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 39 REAFKVF---DRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRL 81 (100)
T ss_dssp HHHHHHT---CSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHH
T ss_pred HHHHHHH---cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4455554 223456799999999998777778888999888754
No 224
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.13 E-value=3.2e+02 Score=25.45 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 74 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 74 ~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
+=..+.+.|+..+++.-|-.+++.+... ....+ .+.+.+.-+-...++|...+|+.+|...++.|-.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~-~~~~d--d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRE-LKKLD--DKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSS--CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH-Hhccc--cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 4457899999999999998888766542 11222 3688888888999999999999999999999876
No 225
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=29.61 E-value=42 Score=25.65 Aligned_cols=59 Identities=10% Similarity=-0.110 Sum_probs=38.3
Q ss_pred HHHHHHh----cCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhH----hcChHHHHHHHHHHHHhcCcc
Q 021452 78 LFKIYFK----LGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 78 l~k~Yfk----l~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~----~~~~~~A~~~L~~A~~~c~~~ 148 (312)
+-.+|.+ .++++.+...++ +.+.. . ..=.|.+|.+|.. ..|+++|.++|..|.+.-+..
T Consensus 63 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-------~-----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 130 (138)
T 1klx_A 63 LGDFYENGKYVKKDLRKAAQYYSKACGLN-------D-----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED 130 (138)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------C-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHcCC-------C-----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHH
Confidence 3445666 667777766554 33321 1 1234778888887 889999999999998865443
No 226
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=29.24 E-value=1.1e+02 Score=20.63 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEee
Q 021452 232 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 289 (312)
Q Consensus 232 kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh 289 (312)
+.+|... +..+.-.|+.+.+..++...+ ..+.++++.++..+=.+| .|+|+.
T Consensus 14 ~~~F~~~---D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~D~~~--dg~i~~ 65 (86)
T 2opo_A 14 ERIFKRF---DTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDG--DGFISF 65 (86)
T ss_dssp HHHHHHH---CTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHHHCTTC--SSEECH
T ss_pred HHHHHHH---CCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHHhCCCC--CCcCcH
Confidence 4445444 223456799999999988776 778899998887653222 455554
No 227
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=29.21 E-value=56 Score=25.46 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 286 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 286 (312)
.+++.++++..+. ++...+-..+..|..+|+|+++
T Consensus 16 ~~~~~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 16 AKYSLDEIAREIR-----IPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp TTSCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCcEEEE
Confidence 5799999999998 6899999999999999999985
No 228
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=28.85 E-value=76 Score=24.06 Aligned_cols=57 Identities=12% Similarity=-0.104 Sum_probs=38.6
Q ss_pred HHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhH----hcChHHHHHHHHHHHHhcC
Q 021452 78 LFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALINCN 146 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~----~~~~~~A~~~L~~A~~~c~ 146 (312)
+=.+|......+.+-..++ +.+.. . ..=.|.+|.+|.. ..|+++|.++|..|...=+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g-------~-----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 92 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN-------S-----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND 92 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT-------C-----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC-------C-----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC
Confidence 4455666666665554443 33321 1 2345888999987 8999999999999998633
No 229
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=28.56 E-value=64 Score=22.98 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHhhccC---C---CCHHHHHHHHHHhHHcCcce
Q 021452 247 HQMKLDVIVKALKWLEM---D---MDVDEVECIVAILIHKNLVK 284 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~---~---~~~~evE~ila~LI~~G~Ik 284 (312)
..+|++.|...|++... . +|.+|++..|..++.+|.+-
T Consensus 21 ~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 21 GAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp CSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 46999999999887521 1 57899999999999999764
No 230
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=27.65 E-value=1.2e+02 Score=26.06 Aligned_cols=68 Identities=15% Similarity=-0.048 Sum_probs=39.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCC----------------------------CCCCCchhhHHHHHHHHHHhhHh
Q 021452 77 QLFKIYFKLGTVHLCRSVIRSIETARIFD----------------------------FEEFPKRDKVTYMYYTGRLEVFN 128 (312)
Q Consensus 77 ~l~k~Yfkl~~~~l~~~lik~i~~~~~p~----------------------------~~~~~~~~~v~y~YY~G~~~~~~ 128 (312)
.+-.+|.+.|+++.+...++.+-.. -|. ....| +-...+|-+|..+...
T Consensus 156 ~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~ 232 (287)
T 3qou_A 156 LLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQV 232 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHc
Confidence 3456888889988888877654321 121 00011 1223456666666666
Q ss_pred cChHHHHHHHHHHHHhcCc
Q 021452 129 ENFPAADQKLSYALINCNP 147 (312)
Q Consensus 129 ~~~~~A~~~L~~A~~~c~~ 147 (312)
+++++|.+.|..+++.-|.
T Consensus 233 g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 233 GRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHhcccc
Confidence 7777777777776665554
No 231
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=27.59 E-value=2.4e+02 Score=22.70 Aligned_cols=75 Identities=15% Similarity=-0.028 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHH-HHhhcc-CCCCCCCC-CchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh
Q 021452 70 GALYLTCQLFKIYFKLGTVHLCRSVI-RSIETA-RIFDFEEF-PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 144 (312)
Q Consensus 70 ~~~~~~n~l~k~Yfkl~~~~l~~~li-k~i~~~-~~p~~~~~-~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~ 144 (312)
+.-......-..+|+.|+++-+-.-. ++|+-. +.|.-+.. ........++-.|..+.-.++|++|..+++.|+..
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33444455566788999999888655 455542 12221100 01112336788999999999999999999999996
No 232
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=27.59 E-value=88 Score=24.37 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 287 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyI 287 (312)
.+++.++++..+. ++...+-..+..|..+|+|+++-
T Consensus 20 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 20 GRATLSELATRAG-----LSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEEE
Confidence 4689999999988 68899999999999999998764
No 233
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=27.27 E-value=1.2e+02 Score=19.30 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=31.5
Q ss_pred CCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEee
Q 021452 244 SKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 289 (312)
Q Consensus 244 ~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh 289 (312)
.+.-.|+.+.+..++...+...+.++++.++..+=.+| .|+|+.
T Consensus 18 d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~--~g~i~~ 61 (71)
T 2b1u_A 18 DGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQ--DGRVNY 61 (71)
T ss_dssp SSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSS--SSEEET
T ss_pred CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCcH
Confidence 34567999999999987666678999988887553222 455554
No 234
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=26.46 E-value=38 Score=20.08 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhh
Q 021452 46 KLKAAGSFLMKVFGV 60 (312)
Q Consensus 46 ~le~~~~~i~~~f~~ 60 (312)
.-|.||.+|+++|+.
T Consensus 4 ~Ee~aA~vIQrA~R~ 18 (31)
T 2l53_B 4 SEEVSAMVIQRAFRR 18 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346799999999974
No 235
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.45 E-value=1.5e+02 Score=27.62 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhhhcCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhh
Q 021452 47 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 126 (312)
Q Consensus 47 le~~~~~i~~~f~~~~~d~sKk~~~~~~~n~l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~ 126 (312)
+++.-..+..+-....++...+.+.+ .+.+.|++.|+++.|-..+..+.... .+..+.+....-.=++++
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~----~la~~~~~~Gd~~~A~~~~~~~~~~~------~~~~~kid~~l~~irl~l 179 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWI----NLGEYYAQIGDKDNAEKTLGKSLSKA------ISTGAKIDVMLTIARLGF 179 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCH----HHHHHHHHHCCCTTHHHHHHHHHHHH------TCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHH
Confidence 34444444444333334432333333 34688899999999998887665421 134677888888888899
Q ss_pred HhcChHHHHHHHHHHHHhcCcc
Q 021452 127 FNENFPAADQKLSYALINCNPQ 148 (312)
Q Consensus 127 ~~~~~~~A~~~L~~A~~~c~~~ 148 (312)
..+||..|...+..|-..-...
T Consensus 180 ~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 180 FYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTC
T ss_pred HhccHHHHHHHHHHHHHhhhcC
Confidence 9999999999999986654433
No 236
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=26.30 E-value=46 Score=27.12 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhHh-----------cChHHHHHHHHHHHHhcCccc
Q 021452 116 TYMYYTGRLEVFN-----------ENFPAADQKLSYALINCNPQS 149 (312)
Q Consensus 116 ~y~YY~G~~~~~~-----------~~~~~A~~~L~~A~~~c~~~~ 149 (312)
.-+|.+|..|... ++|++|.++|+.|+..-|.+.
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 3468899998876 489999999999999888654
No 237
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=26.24 E-value=1.3e+02 Score=22.04 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEee
Q 021452 231 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 289 (312)
Q Consensus 231 ~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh 289 (312)
++.+|... ++.+.-.|+.+.+..++.-.+..++.++++.++..+= +| .|.|+.
T Consensus 81 ~~~~F~~~---D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~--dg~i~~ 133 (142)
T 2bl0_C 81 LRQAFRTF---DPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE-TE--KGQIRY 133 (142)
T ss_dssp HHHHHHHT---CCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC-CS--SSEECS
T ss_pred HHHHHHHH---CCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CC--CCcEeH
Confidence 34445443 2234567999999999987666689999999988764 33 566654
No 238
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=24.74 E-value=55 Score=25.28 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=28.0
Q ss_pred ccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceE
Q 021452 249 MKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 285 (312)
Q Consensus 249 I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkG 285 (312)
++.+.++..+. ++..+|..++.+|+.+|+|.=
T Consensus 52 ps~~~LA~~l~-----~s~~~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 52 PTPAELAERMT-----VSAAECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp CCHHHHHHTSS-----SCHHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEE
Confidence 68888888776 689999999999999999953
No 239
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=24.58 E-value=61 Score=25.43 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 286 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 286 (312)
.++++++++..+. ++...+-..+..|..+|+|+++
T Consensus 20 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 20 GKAPLREISKITG-----LAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp TTCCHHHHHHHHC-----SCHHHHHHHHHHHHHHTSSCCC
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEEE
Confidence 5799999999988 6899999999999999999875
No 240
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.26 E-value=69 Score=26.02 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 286 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 286 (312)
.++|+++++..+. ++...+-..+..|..+|+|++|
T Consensus 40 ~~~s~~eLA~~lg-----lS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 40 GKAPLREISKITG-----LAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEee
Confidence 5799999999988 6899999999999999999886
No 241
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.16 E-value=69 Score=33.54 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=38.0
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
++..+.+.+.++++..+.+-++. .... .|..|+.++..|++++|.++|..|-.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-----------t~~~--~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-----------DPIA--VYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-----------SHHH--HHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-----------ChHH--HHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 45556677777777665543332 2222 38999999999999999999988764
No 242
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=23.18 E-value=1.1e+02 Score=20.65 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=31.4
Q ss_pred CCccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEee
Q 021452 245 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 289 (312)
Q Consensus 245 ~~~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh 289 (312)
+.-.|+.+.+..++...+...+.++++.++..+=.+| .|+|+.
T Consensus 36 ~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~--~g~i~~ 78 (87)
T 1s6j_A 36 NSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDK--SGTIDY 78 (87)
T ss_dssp CSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTC--SSEECH
T ss_pred CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCcH
Confidence 4567999999999987777788999999887652222 455543
No 243
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=22.63 E-value=1.5e+02 Score=18.54 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=26.4
Q ss_pred CCccccHHHHHHHHhhccCCCCHHHHHHHHHHh
Q 021452 245 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAIL 277 (312)
Q Consensus 245 ~~~~I~l~~i~~al~~~~~~~~~~evE~ila~L 277 (312)
+.-.|+.+.+..++...+...+.++++.++..+
T Consensus 14 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 14 KDGKLSLDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp SSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 446799999999988766667888998887755
No 244
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=22.59 E-value=84 Score=29.36 Aligned_cols=54 Identities=11% Similarity=-0.003 Sum_probs=40.9
Q ss_pred HhcCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCc
Q 021452 83 FKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 147 (312)
Q Consensus 83 fkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~ 147 (312)
+-.|+++.+...+. ++.-. | + ...+...|+++...|++++|.++++.|++.-|.
T Consensus 288 l~~gd~d~A~~~l~rAl~Ln--~-------s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 288 LVKGKTDESYQAINTGIDLE--M-------S--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--C-------C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhCCCHHHHHHHHHHHHhcC--C-------C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34489988887664 44431 2 1 234478899999999999999999999998773
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.46 E-value=75 Score=33.88 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=36.4
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHH
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 143 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~ 143 (312)
++...++.+.+++++.+..-++. .... .|..|+.++..+++++|.++|..|-.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~-----------~~~~--~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS-----------DPIA--VYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC-----------CHHH--HHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhhhHHHHHHHhhhccC-----------CcHH--HHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 34445566666666655543332 1222 38899999999999999999988854
No 246
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=21.32 E-value=83 Score=24.05 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=31.3
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEE
Q 021452 247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 286 (312)
Q Consensus 247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGy 286 (312)
.++++++++..+. ++...+-..+..|..+|+|+++
T Consensus 17 ~~~~~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 17 ARTPFTEIAKKLG-----ISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHHTSSCCC
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEecc
Confidence 4689999999987 6888999999999999999876
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=21.11 E-value=1.9e+02 Score=23.94 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=39.2
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHH
Q 021452 78 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSY 140 (312)
Q Consensus 78 l~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~ 140 (312)
-|-+-.++|+++.|..+.+.+++. .-.--+|..++.+++++-|+++|+.
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l~~~--------------~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKLNDS--------------ITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCH--------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHhCCH--------------HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 477788999999999998877531 2345689999999999999986554
No 248
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=20.35 E-value=3.9e+02 Score=22.56 Aligned_cols=51 Identities=6% Similarity=-0.082 Sum_probs=28.3
Q ss_pred cCChhhHHHHHH-HhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhc
Q 021452 85 LGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 145 (312)
Q Consensus 85 l~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c 145 (312)
.|+++.+..++. +++. .|. ...+..-.|.++...|++++|...|+.|+..|
T Consensus 182 ~~~~~~A~~~~~~al~~--~p~--------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKK--YGD--------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp SCCHHHHHHHHHHHHHH--HTT--------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred cCCHHHHHHHHHHHHHh--CCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 566666666554 3332 121 12344455566666667777777777777654
No 249
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=20.21 E-value=3.3e+02 Score=21.73 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=38.6
Q ss_pred HHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCchhhHHHHHHHHHHhhHhc----ChHHHHHHHHHHHHhc
Q 021452 79 FKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNE----NFPAADQKLSYALINC 145 (312)
Q Consensus 79 ~k~Yfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~----~~~~A~~~L~~A~~~c 145 (312)
-.+|+..++++.+...++. ++.. . ..-.|.+|.+|.. + ++.+|.++|..|...-
T Consensus 25 g~~~~~~~~~~~A~~~~~~a~~~g-------~-----~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g 83 (212)
T 3rjv_A 25 ADTWVSSGDYQKAEYWAQKAAAQG-------D-----GDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG 83 (212)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTT-------C-----HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcC-------C-----HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC
Confidence 3456668888888877653 3321 1 2346789999887 6 9999999999997753
No 250
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=20.18 E-value=1.7e+02 Score=18.98 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHh
Q 021452 231 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAIL 277 (312)
Q Consensus 231 ~kkv~~~~~~~~~~~~~~I~l~~i~~al~~~~~~~~~~evE~ila~L 277 (312)
++.+|... +..+.-.|+...+..++...+...+.++++.++..+
T Consensus 9 l~~~F~~~---D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 52 (77)
T 2joj_A 9 IKEAFDLF---DTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEY 52 (77)
T ss_dssp HHHHHHHH---CCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34455444 223446799999999988766667888888877654
Done!