Query 021453
Match_columns 312
No_of_seqs 362 out of 2001
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.9E-42 4.1E-47 270.7 20.1 249 1-307 139-473 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-39 5.4E-44 256.0 17.9 225 27-297 214-442 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-37 3.8E-42 245.6 13.4 197 28-260 259-458 (459)
4 KOG0263 Transcription initiati 100.0 9.7E-37 2.1E-41 258.5 18.1 203 27-265 448-652 (707)
5 KOG0271 Notchless-like WD40 re 100.0 2.1E-35 4.5E-40 231.4 21.2 238 26-297 111-400 (480)
6 KOG0315 G-protein beta subunit 100.0 1.4E-33 3.1E-38 209.4 20.5 220 1-265 63-291 (311)
7 KOG0279 G protein beta subunit 100.0 1.4E-32 3E-37 207.2 23.8 240 27-298 12-266 (315)
8 KOG0279 G protein beta subunit 100.0 5.8E-33 1.3E-37 209.3 19.5 202 26-264 59-264 (315)
9 KOG0286 G-protein beta subunit 100.0 2.6E-31 5.7E-36 201.6 23.6 253 27-310 52-321 (343)
10 KOG0645 WD40 repeat protein [G 100.0 3.9E-31 8.5E-36 198.7 23.9 206 27-262 11-225 (312)
11 KOG0281 Beta-TrCP (transducin 100.0 1.6E-32 3.4E-37 213.1 15.4 248 1-302 219-485 (499)
12 KOG0263 Transcription initiati 100.0 6.1E-32 1.3E-36 229.5 17.0 247 30-298 378-653 (707)
13 KOG0266 WD40 repeat-containing 100.0 9.2E-31 2E-35 225.9 24.5 236 29-297 158-412 (456)
14 KOG0286 G-protein beta subunit 100.0 1.1E-30 2.4E-35 198.2 21.7 223 1-264 79-305 (343)
15 KOG0273 Beta-transducin family 100.0 4.2E-31 9E-36 212.3 20.4 214 30-264 235-484 (524)
16 KOG0284 Polyadenylation factor 100.0 6.8E-32 1.5E-36 213.2 14.8 229 30-294 96-337 (464)
17 KOG0265 U5 snRNP-specific prot 100.0 6.7E-31 1.5E-35 200.1 19.2 235 26-295 43-297 (338)
18 KOG0285 Pleiotropic regulator 100.0 2E-31 4.4E-36 207.5 16.4 237 27-300 148-395 (460)
19 KOG0284 Polyadenylation factor 100.0 1.3E-31 2.9E-36 211.6 14.8 230 28-292 136-378 (464)
20 KOG0291 WD40-repeat-containing 100.0 2.4E-30 5.1E-35 218.8 22.7 201 27-263 347-551 (893)
21 KOG0266 WD40 repeat-containing 100.0 6.2E-30 1.3E-34 220.8 24.4 206 27-267 200-414 (456)
22 KOG0315 G-protein beta subunit 100.0 1.4E-29 2.9E-34 188.3 21.7 252 1-299 22-293 (311)
23 KOG0276 Vesicle coat complex C 100.0 2.8E-30 6.1E-35 214.3 17.7 218 1-263 37-258 (794)
24 KOG0295 WD40 repeat-containing 100.0 4.6E-30 1E-34 200.2 17.7 199 27-261 190-405 (406)
25 KOG0319 WD40-repeat-containing 100.0 8.8E-30 1.9E-34 214.9 20.3 243 27-292 362-617 (775)
26 KOG0273 Beta-transducin family 100.0 1.2E-29 2.6E-34 204.0 19.7 213 29-262 275-523 (524)
27 KOG0319 WD40-repeat-containing 100.0 7.1E-30 1.5E-34 215.4 17.4 207 28-260 409-617 (775)
28 KOG0282 mRNA splicing factor [ 100.0 3.3E-30 7.1E-35 207.8 13.4 241 24-298 208-466 (503)
29 KOG0645 WD40 repeat protein [G 100.0 3.4E-28 7.4E-33 182.9 23.3 198 28-262 59-261 (312)
30 PTZ00421 coronin; Provisional 100.0 2.9E-28 6.3E-33 209.9 25.4 212 27-265 72-293 (493)
31 KOG0292 Vesicle coat complex C 100.0 5.7E-29 1.2E-33 213.9 18.5 220 1-267 33-285 (1202)
32 KOG0295 WD40 repeat-containing 100.0 6.7E-29 1.5E-33 193.7 16.2 236 27-297 105-367 (406)
33 PTZ00420 coronin; Provisional 100.0 1.2E-27 2.6E-32 207.2 25.6 211 27-264 71-295 (568)
34 KOG0313 Microtubule binding pr 100.0 1.4E-27 3.1E-32 187.3 23.0 251 28-305 142-409 (423)
35 KOG0316 Conserved WD40 repeat- 100.0 5.6E-28 1.2E-32 178.4 19.0 232 28-298 15-261 (307)
36 KOG0285 Pleiotropic regulator 100.0 4.1E-28 8.9E-33 189.2 18.6 217 1-266 175-393 (460)
37 KOG0640 mRNA cleavage stimulat 100.0 2.2E-28 4.9E-33 187.4 15.7 221 28-267 110-340 (430)
38 KOG0275 Conserved WD40 repeat- 100.0 1.3E-28 2.7E-33 190.1 14.1 243 28-297 211-470 (508)
39 KOG0276 Vesicle coat complex C 100.0 6.3E-28 1.4E-32 200.4 17.6 180 1-224 79-261 (794)
40 PLN00181 protein SPA1-RELATED; 100.0 7.4E-27 1.6E-31 215.7 26.8 198 30-263 532-739 (793)
41 KOG0282 mRNA splicing factor [ 100.0 6.9E-29 1.5E-33 200.2 11.5 214 1-260 239-503 (503)
42 KOG0316 Conserved WD40 repeat- 100.0 2.4E-27 5.2E-32 175.1 18.2 204 26-266 55-261 (307)
43 cd00200 WD40 WD40 domain, foun 100.0 2E-26 4.2E-31 188.1 25.4 217 1-264 33-251 (289)
44 PLN00181 protein SPA1-RELATED; 100.0 1.9E-26 4.1E-31 213.0 27.5 236 28-294 481-738 (793)
45 KOG0277 Peroxisomal targeting 100.0 1.8E-27 4E-32 177.5 16.7 202 30-264 60-267 (311)
46 KOG0296 Angio-associated migra 100.0 2.6E-27 5.6E-32 185.0 18.1 219 27-266 61-360 (399)
47 KOG0292 Vesicle coat complex C 100.0 3.8E-27 8.1E-32 202.9 20.5 230 30-295 9-281 (1202)
48 cd00200 WD40 WD40 domain, foun 100.0 5.3E-26 1.2E-30 185.5 26.7 233 28-296 7-251 (289)
49 KOG0318 WD40 repeat stress pro 100.0 2.8E-26 6.1E-31 187.0 24.2 235 16-267 176-565 (603)
50 KOG0318 WD40 repeat stress pro 100.0 1.5E-26 3.2E-31 188.7 22.5 223 24-264 53-352 (603)
51 KOG0283 WD40 repeat-containing 100.0 5.1E-27 1.1E-31 201.3 20.6 248 28-296 265-578 (712)
52 KOG0281 Beta-TrCP (transducin 100.0 6.2E-28 1.3E-32 187.7 13.5 225 29-299 196-433 (499)
53 PTZ00421 coronin; Provisional 100.0 2.7E-26 5.8E-31 197.8 24.2 251 32-297 22-293 (493)
54 KOG0277 Peroxisomal targeting 100.0 2.8E-27 6.1E-32 176.5 14.8 200 28-260 102-307 (311)
55 KOG0291 WD40-repeat-containing 99.9 7.6E-26 1.7E-30 191.8 23.4 230 31-296 308-552 (893)
56 KOG0265 U5 snRNP-specific prot 99.9 6.9E-26 1.5E-30 172.8 19.3 201 27-264 87-298 (338)
57 KOG0264 Nucleosome remodeling 99.9 4.1E-26 8.8E-31 183.0 18.6 237 1-262 149-404 (422)
58 KOG0274 Cdc4 and related F-box 99.9 1.4E-25 3.1E-30 193.7 22.5 229 27-298 246-486 (537)
59 KOG0305 Anaphase promoting com 99.9 2E-25 4.4E-30 186.5 21.5 249 1-296 199-463 (484)
60 KOG0269 WD40 repeat-containing 99.9 1E-26 2.2E-31 197.5 13.7 223 1-264 112-342 (839)
61 KOG0264 Nucleosome remodeling 99.9 4.6E-26 1E-30 182.7 15.9 219 29-263 123-348 (422)
62 PTZ00420 coronin; Provisional 99.9 7.1E-25 1.5E-29 190.1 24.4 221 49-296 50-295 (568)
63 KOG0313 Microtubule binding pr 99.9 2E-25 4.4E-30 175.3 17.9 211 28-261 191-417 (423)
64 KOG0310 Conserved WD40 repeat- 99.9 1.4E-25 3.1E-30 181.4 17.4 229 30-297 68-302 (487)
65 KOG0275 Conserved WD40 repeat- 99.9 8E-27 1.7E-31 180.2 9.3 222 1-260 237-507 (508)
66 KOG0268 Sof1-like rRNA process 99.9 4.4E-26 9.6E-31 178.1 13.4 221 26-266 62-349 (433)
67 KOG0306 WD40-repeat-containing 99.9 1.4E-25 3.1E-30 190.1 17.2 212 28-263 452-665 (888)
68 KOG0306 WD40-repeat-containing 99.9 1.6E-24 3.4E-29 183.8 21.8 255 1-292 396-662 (888)
69 KOG0293 WD40 repeat-containing 99.9 8.4E-26 1.8E-30 179.3 13.1 179 28-221 267-514 (519)
70 KOG1407 WD40 repeat protein [F 99.9 2.7E-24 6E-29 161.2 19.1 221 27-282 17-281 (313)
71 KOG0289 mRNA splicing factor [ 99.9 1.9E-24 4.2E-29 172.6 19.3 202 26-260 257-460 (506)
72 KOG0278 Serine/threonine kinas 99.9 7.2E-25 1.6E-29 163.4 15.1 161 27-224 140-301 (334)
73 KOG0973 Histone transcription 99.9 1.8E-24 4E-29 190.3 19.1 260 29-297 12-358 (942)
74 KOG0293 WD40 repeat-containing 99.9 8.6E-24 1.9E-28 168.0 19.9 250 28-310 222-486 (519)
75 KOG0973 Histone transcription 99.9 5.2E-24 1.1E-28 187.5 20.4 218 27-264 66-357 (942)
76 KOG0308 Conserved WD40 repeat- 99.9 8.7E-25 1.9E-29 182.6 14.5 218 29-270 72-293 (735)
77 KOG0641 WD40 repeat protein [G 99.9 1.4E-22 3.1E-27 149.3 23.8 205 28-264 87-305 (350)
78 KOG0772 Uncharacterized conser 99.9 8E-24 1.7E-28 172.6 18.8 264 1-291 191-484 (641)
79 KOG0305 Anaphase promoting com 99.9 5.6E-24 1.2E-28 177.9 18.4 216 1-264 241-463 (484)
80 KOG0294 WD40 repeat-containing 99.9 2.5E-23 5.4E-28 160.0 19.4 201 26-264 39-283 (362)
81 KOG0772 Uncharacterized conser 99.9 7.3E-24 1.6E-28 172.8 16.6 226 27-269 164-401 (641)
82 KOG1446 Histone H3 (Lys4) meth 99.9 2.4E-22 5.2E-27 154.8 23.8 233 30-299 14-267 (311)
83 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-22 2.8E-27 156.3 22.2 217 11-262 81-303 (311)
84 KOG0269 WD40 repeat-containing 99.9 1.6E-24 3.5E-29 184.2 12.9 206 32-267 89-301 (839)
85 KOG0283 WD40 repeat-containing 99.9 1.2E-23 2.7E-28 180.7 17.9 203 23-263 362-577 (712)
86 KOG0302 Ribosome Assembly prot 99.9 2E-23 4.3E-28 164.1 17.5 166 27-221 208-379 (440)
87 KOG0289 mRNA splicing factor [ 99.9 4.1E-23 9E-28 165.0 19.2 200 28-261 301-505 (506)
88 KOG0300 WD40 repeat-containing 99.9 1.5E-23 3.3E-28 161.7 15.6 249 27-296 145-430 (481)
89 KOG1332 Vesicle coat complex C 99.9 2.1E-23 4.5E-28 155.1 15.6 235 28-292 9-284 (299)
90 KOG0274 Cdc4 and related F-box 99.9 4.4E-23 9.6E-28 178.3 20.1 230 29-300 207-447 (537)
91 KOG0643 Translation initiation 99.9 2.9E-22 6.3E-27 150.9 21.6 201 28-265 8-223 (327)
92 KOG4283 Transcription-coupled 99.9 2.6E-23 5.6E-28 158.7 15.9 215 27-264 40-278 (397)
93 KOG0267 Microtubule severing p 99.9 9E-25 2E-29 184.5 8.1 192 27-254 67-260 (825)
94 KOG0267 Microtubule severing p 99.9 2.1E-24 4.5E-29 182.3 10.0 201 29-265 27-229 (825)
95 KOG1407 WD40 repeat protein [F 99.9 5E-23 1.1E-27 154.5 16.2 206 27-253 61-293 (313)
96 KOG0270 WD40 repeat-containing 99.9 1.2E-22 2.7E-27 162.7 18.9 205 27-264 240-451 (463)
97 KOG0310 Conserved WD40 repeat- 99.9 5.1E-23 1.1E-27 166.7 16.4 198 28-261 108-308 (487)
98 KOG1332 Vesicle coat complex C 99.9 1.2E-22 2.6E-27 151.1 16.4 205 27-261 53-285 (299)
99 KOG0640 mRNA cleavage stimulat 99.9 8.1E-23 1.8E-27 157.1 15.8 231 28-291 170-423 (430)
100 KOG2096 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 151.5 21.9 214 27-262 83-308 (420)
101 KOG0288 WD40 repeat protein Ti 99.9 1.4E-23 3.1E-28 166.6 12.0 230 1-259 199-458 (459)
102 KOG0647 mRNA export protein (c 99.9 1E-21 2.3E-26 150.3 21.5 199 29-263 26-229 (347)
103 KOG0278 Serine/threonine kinas 99.9 3.9E-23 8.5E-28 154.3 13.0 233 27-298 56-301 (334)
104 KOG0299 U3 snoRNP-associated p 99.9 1.7E-22 3.6E-27 162.7 17.0 246 28-296 140-412 (479)
105 KOG0646 WD40 repeat protein [G 99.9 4.6E-22 1E-26 160.4 18.7 209 30-265 81-310 (476)
106 KOG0643 Translation initiation 99.9 4.2E-21 9.1E-26 144.7 22.0 196 27-253 49-252 (327)
107 KOG0301 Phospholipase A2-activ 99.9 3E-22 6.5E-27 168.7 17.7 227 29-297 56-291 (745)
108 KOG0308 Conserved WD40 repeat- 99.9 3.8E-22 8.2E-27 167.0 18.1 206 29-261 116-326 (735)
109 KOG0300 WD40 repeat-containing 99.9 1.8E-22 4E-27 155.7 14.8 215 26-264 186-430 (481)
110 KOG0288 WD40 repeat protein Ti 99.9 2E-23 4.3E-28 165.8 9.3 235 28-300 173-423 (459)
111 KOG0639 Transducin-like enhanc 99.9 8E-23 1.7E-27 166.4 12.3 222 1-264 442-665 (705)
112 KOG0294 WD40 repeat-containing 99.9 5.3E-22 1.1E-26 152.8 15.4 195 1-223 65-284 (362)
113 KOG0296 Angio-associated migra 99.9 5.6E-21 1.2E-25 149.8 19.3 166 85-270 61-228 (399)
114 KOG0299 U3 snoRNP-associated p 99.9 5.7E-21 1.2E-25 153.9 18.5 199 28-264 200-412 (479)
115 KOG0302 Ribosome Assembly prot 99.9 3.9E-21 8.5E-26 151.3 15.4 220 27-263 148-379 (440)
116 KOG1274 WD40 repeat protein [G 99.9 6.5E-20 1.4E-24 159.3 24.3 232 28-295 11-263 (933)
117 KOG0303 Actin-binding protein 99.9 9.7E-21 2.1E-25 150.0 17.1 210 27-265 78-297 (472)
118 KOG4328 WD40 protein [Function 99.9 7.3E-21 1.6E-25 153.2 16.0 204 29-261 185-398 (498)
119 KOG0301 Phospholipase A2-activ 99.9 8.1E-21 1.7E-25 160.2 16.5 192 27-263 98-289 (745)
120 KOG4283 Transcription-coupled 99.9 4.1E-20 8.8E-25 141.4 18.3 231 27-293 98-364 (397)
121 KOG1334 WD40 repeat protein [G 99.9 1.1E-21 2.5E-26 159.1 10.1 244 1-255 257-502 (559)
122 KOG2048 WD40 repeat protein [G 99.9 4.7E-20 1E-24 155.2 20.0 202 30-265 25-236 (691)
123 KOG0647 mRNA export protein (c 99.9 2.1E-20 4.6E-25 143.3 16.4 214 1-245 52-306 (347)
124 KOG1273 WD40 repeat protein [G 99.9 2.5E-19 5.4E-24 138.3 20.9 215 33-264 26-282 (405)
125 KOG0646 WD40 repeat protein [G 99.9 2.2E-20 4.8E-25 150.8 15.3 185 1-223 105-310 (476)
126 KOG0268 Sof1-like rRNA process 99.9 4.5E-21 9.7E-26 150.3 10.6 176 1-221 169-346 (433)
127 KOG0641 WD40 repeat protein [G 99.9 2.9E-19 6.2E-24 132.0 19.4 202 27-262 133-349 (350)
128 KOG2445 Nuclear pore complex c 99.8 8E-20 1.7E-24 140.5 16.4 212 27-262 10-318 (361)
129 KOG1007 WD repeat protein TSSC 99.8 1.3E-19 2.9E-24 138.2 17.2 212 28-263 61-290 (370)
130 KOG1274 WD40 repeat protein [G 99.8 1.5E-19 3.3E-24 157.0 19.7 197 29-262 55-262 (933)
131 KOG0639 Transducin-like enhanc 99.8 2.2E-19 4.8E-24 146.6 17.9 206 28-263 417-623 (705)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4.8E-18 1E-22 140.3 26.0 248 1-297 13-282 (300)
133 KOG0307 Vesicle coat complex C 99.8 1.2E-20 2.6E-25 167.4 10.9 207 28-265 114-330 (1049)
134 KOG0270 WD40 repeat-containing 99.8 1.2E-19 2.6E-24 145.7 15.5 216 32-266 175-408 (463)
135 KOG1036 Mitotic spindle checkp 99.8 4.2E-19 9.1E-24 136.5 17.5 202 29-250 53-292 (323)
136 KOG1007 WD repeat protein TSSC 99.8 2.9E-19 6.3E-24 136.4 15.4 206 29-264 122-363 (370)
137 KOG0321 WD40 repeat-containing 99.8 7.6E-19 1.7E-23 147.1 18.9 257 27-299 97-396 (720)
138 KOG1539 WD repeat protein [Gen 99.8 2.7E-19 5.9E-24 153.9 16.7 197 31-261 449-647 (910)
139 KOG1036 Mitotic spindle checkp 99.8 3.9E-18 8.4E-23 131.3 20.9 153 30-222 13-165 (323)
140 KOG2106 Uncharacterized conser 99.8 3.7E-18 7.9E-23 139.5 21.9 258 1-291 224-518 (626)
141 KOG4378 Nuclear protein COP1 [ 99.8 4.4E-19 9.5E-24 144.7 15.8 253 1-295 14-281 (673)
142 KOG1408 WD40 repeat protein [F 99.8 5.6E-19 1.2E-23 150.0 16.9 217 29-263 458-714 (1080)
143 KOG1539 WD repeat protein [Gen 99.8 8E-18 1.7E-22 145.0 23.4 141 149-291 450-645 (910)
144 KOG0290 Conserved WD40 repeat- 99.8 9.8E-19 2.1E-23 133.6 15.6 169 27-222 147-320 (364)
145 KOG0303 Actin-binding protein 99.8 7.8E-19 1.7E-23 139.3 15.6 207 82-300 75-290 (472)
146 KOG1034 Transcriptional repres 99.8 2E-19 4.3E-24 139.5 11.8 218 27-261 132-382 (385)
147 KOG0307 Vesicle coat complex C 99.8 1.5E-19 3.2E-24 160.5 12.0 209 31-264 65-286 (1049)
148 KOG0650 WD40 repeat nucleolar 99.8 2.4E-19 5.1E-24 149.2 12.4 228 27-259 397-732 (733)
149 KOG0321 WD40 repeat-containing 99.8 8.3E-19 1.8E-23 146.9 15.5 244 1-264 124-393 (720)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1E-17 2.2E-22 138.3 21.8 198 33-267 75-284 (300)
151 KOG1063 RNA polymerase II elon 99.8 1.5E-18 3.3E-23 146.6 16.4 222 27-264 358-650 (764)
152 KOG1034 Transcriptional repres 99.8 1.9E-17 4.1E-22 128.6 20.3 239 28-298 36-341 (385)
153 KOG1273 WD40 repeat protein [G 99.8 7.7E-19 1.7E-23 135.6 12.4 233 1-264 47-324 (405)
154 KOG4328 WD40 protein [Function 99.8 9.8E-18 2.1E-22 135.4 19.3 233 28-292 232-493 (498)
155 KOG2919 Guanine nucleotide-bin 99.8 4.7E-18 1E-22 131.7 16.0 205 30-264 104-329 (406)
156 KOG2055 WD40 repeat protein [G 99.8 1.9E-18 4.2E-23 139.6 14.4 218 2-262 283-512 (514)
157 KOG1587 Cytoplasmic dynein int 99.8 2.2E-17 4.8E-22 142.3 21.0 239 1-263 224-517 (555)
158 KOG2055 WD40 repeat protein [G 99.8 9.7E-18 2.1E-22 135.6 17.5 202 30-262 213-417 (514)
159 KOG2096 WD40 repeat protein [G 99.8 4E-17 8.6E-22 126.5 19.7 233 32-292 134-400 (420)
160 KOG1445 Tumor-specific antigen 99.8 2.7E-18 5.8E-23 144.1 13.9 206 30-264 627-846 (1012)
161 KOG0642 Cell-cycle nuclear pro 99.8 4.4E-18 9.5E-23 140.8 14.7 218 29-264 293-563 (577)
162 KOG4378 Nuclear protein COP1 [ 99.8 6.9E-18 1.5E-22 137.8 14.8 199 34-267 83-285 (673)
163 KOG1445 Tumor-specific antigen 99.8 7E-18 1.5E-22 141.7 15.0 197 44-263 592-799 (1012)
164 KOG2106 Uncharacterized conser 99.8 9.2E-17 2E-21 131.5 20.9 233 30-298 200-481 (626)
165 KOG2445 Nuclear pore complex c 99.8 5E-17 1.1E-21 125.3 17.9 203 1-220 37-318 (361)
166 KOG0642 Cell-cycle nuclear pro 99.8 2E-17 4.4E-22 136.9 16.0 186 27-222 341-563 (577)
167 KOG1408 WD40 repeat protein [F 99.8 9.1E-18 2E-22 142.7 13.8 176 28-220 499-713 (1080)
168 KOG2048 WD40 repeat protein [G 99.8 1.6E-16 3.5E-21 134.2 20.8 216 2-263 93-320 (691)
169 KOG1188 WD40 repeat protein [G 99.8 4.9E-17 1.1E-21 126.9 14.9 192 44-266 41-246 (376)
170 KOG0649 WD40 repeat protein [G 99.7 4.4E-16 9.6E-21 116.4 18.7 222 32-268 12-241 (325)
171 KOG1188 WD40 repeat protein [G 99.7 3.1E-16 6.8E-21 122.5 17.5 166 27-222 67-244 (376)
172 KOG2919 Guanine nucleotide-bin 99.7 8.9E-16 1.9E-20 119.3 19.5 244 32-297 51-331 (406)
173 KOG1009 Chromatin assembly com 99.7 5.2E-17 1.1E-21 129.4 12.1 180 30-220 13-195 (434)
174 KOG0644 Uncharacterized conser 99.7 1.1E-17 2.3E-22 144.4 8.8 231 27-296 187-470 (1113)
175 KOG0771 Prolactin regulatory e 99.7 8.6E-17 1.9E-21 128.9 13.0 196 34-263 148-355 (398)
176 KOG2394 WD40 protein DMR-N9 [G 99.7 3.2E-16 6.9E-21 129.3 15.6 152 30-200 219-384 (636)
177 KOG2110 Uncharacterized conser 99.7 3.4E-15 7.4E-20 117.9 20.7 159 30-223 87-251 (391)
178 KOG1063 RNA polymerase II elon 99.7 6.7E-16 1.5E-20 130.9 17.8 205 27-262 522-763 (764)
179 PF08662 eIF2A: Eukaryotic tra 99.7 2.4E-15 5.2E-20 115.0 17.7 154 34-224 9-183 (194)
180 KOG0322 G-protein beta subunit 99.7 4E-16 8.7E-21 117.9 11.4 171 29-219 149-322 (323)
181 KOG1538 Uncharacterized conser 99.7 1.2E-15 2.5E-20 129.2 15.3 224 27-291 50-290 (1081)
182 KOG0290 Conserved WD40 repeat- 99.7 7.4E-15 1.6E-19 112.6 17.6 242 31-298 45-322 (364)
183 COG2319 FOG: WD40 repeat [Gene 99.7 2.1E-14 4.5E-19 123.7 22.8 201 28-265 153-362 (466)
184 KOG1310 WD40 repeat protein [G 99.7 8.5E-16 1.8E-20 127.2 12.7 169 27-220 47-231 (758)
185 KOG3881 Uncharacterized conser 99.7 4.6E-15 1E-19 118.0 16.1 170 31-224 149-324 (412)
186 PRK01742 tolB translocation pr 99.7 7.5E-15 1.6E-19 126.8 18.7 191 29-262 202-401 (429)
187 KOG1524 WD40 repeat-containing 99.7 2E-15 4.3E-20 124.7 14.2 182 27-258 101-282 (737)
188 KOG1517 Guanine nucleotide bin 99.7 6.7E-15 1.5E-19 130.5 17.2 236 1-266 1088-1337(1387)
189 KOG1524 WD40 repeat-containing 99.7 5.2E-15 1.1E-19 122.3 15.0 208 44-292 76-284 (737)
190 KOG0322 G-protein beta subunit 99.6 6.3E-15 1.4E-19 111.5 13.6 239 1-261 37-322 (323)
191 PRK11028 6-phosphogluconolacto 99.6 2.3E-13 4.9E-18 114.0 24.2 202 31-264 35-260 (330)
192 KOG1523 Actin-related protein 99.6 2.8E-14 6E-19 110.9 16.4 206 30-264 10-238 (361)
193 KOG2110 Uncharacterized conser 99.6 1.1E-13 2.3E-18 109.6 19.6 194 32-263 48-249 (391)
194 KOG4227 WD40 repeat protein [G 99.6 1.1E-13 2.3E-18 110.6 19.0 246 27-299 53-327 (609)
195 COG2319 FOG: WD40 repeat [Gene 99.6 1.9E-13 4.2E-18 117.7 22.3 203 28-266 63-275 (466)
196 KOG2321 WD40 repeat protein [G 99.6 9E-14 2E-18 115.9 17.6 244 28-290 49-330 (703)
197 KOG2139 WD40 repeat protein [G 99.6 9.2E-13 2E-17 104.2 22.2 163 30-218 140-307 (445)
198 KOG0649 WD40 repeat protein [G 99.6 1.5E-13 3.3E-18 103.0 16.7 188 32-259 116-313 (325)
199 KOG1240 Protein kinase contain 99.6 5.4E-14 1.2E-18 126.6 16.9 231 28-267 1046-1339(1431)
200 KOG0650 WD40 repeat nucleolar 99.6 1.4E-14 3E-19 121.2 12.3 154 30-218 566-733 (733)
201 KOG1009 Chromatin assembly com 99.6 1.8E-14 3.9E-19 115.2 12.2 167 87-264 12-197 (434)
202 PRK03629 tolB translocation pr 99.6 6.1E-13 1.3E-17 114.8 22.3 193 30-262 198-406 (429)
203 KOG2139 WD40 repeat protein [G 99.6 3.2E-13 7E-18 106.8 18.3 207 31-260 99-309 (445)
204 KOG1272 WD40-repeat-containing 99.6 6.4E-15 1.4E-19 119.7 7.7 197 32-267 131-328 (545)
205 PRK04922 tolB translocation pr 99.6 8.9E-13 1.9E-17 114.2 21.4 194 29-262 202-411 (433)
206 KOG2394 WD40 protein DMR-N9 [G 99.6 4.8E-14 1.1E-18 116.6 12.3 170 40-224 183-366 (636)
207 PRK05137 tolB translocation pr 99.6 2E-12 4.4E-17 112.1 22.7 182 29-250 200-394 (435)
208 KOG1963 WD40 repeat protein [G 99.6 2.9E-13 6.2E-18 118.1 16.8 218 27-261 54-321 (792)
209 PRK11028 6-phosphogluconolacto 99.5 4.7E-12 1E-16 106.0 22.9 202 32-263 81-305 (330)
210 KOG0974 WD-repeat protein WDR6 99.5 2.3E-13 5E-18 120.7 15.2 196 36-264 93-290 (967)
211 KOG0771 Prolactin regulatory e 99.5 1.3E-13 2.9E-18 110.8 12.2 166 27-221 183-355 (398)
212 KOG1517 Guanine nucleotide bin 99.5 7E-13 1.5E-17 118.0 17.5 201 34-264 1169-1383(1387)
213 KOG2111 Uncharacterized conser 99.5 5.6E-12 1.2E-16 98.2 19.7 160 30-223 94-259 (346)
214 KOG1523 Actin-related protein 99.5 8.3E-13 1.8E-17 102.8 14.6 167 27-223 52-239 (361)
215 KOG1272 WD40-repeat-containing 99.5 2.2E-14 4.8E-19 116.6 6.1 188 31-260 171-360 (545)
216 KOG4227 WD40 repeat protein [G 99.5 2.4E-13 5.2E-18 108.6 11.5 180 76-268 45-231 (609)
217 KOG4497 Uncharacterized conser 99.5 1.4E-12 3.1E-17 102.0 15.4 212 30-262 91-391 (447)
218 PF08662 eIF2A: Eukaryotic tra 99.5 2E-12 4.4E-17 98.9 15.8 151 92-264 9-181 (194)
219 PRK02889 tolB translocation pr 99.5 5.6E-12 1.2E-16 108.9 20.0 185 29-253 194-391 (427)
220 PRK01742 tolB translocation pr 99.5 1.4E-12 3.1E-17 112.7 16.4 161 33-234 250-418 (429)
221 KOG1587 Cytoplasmic dynein int 99.5 1.4E-12 3.1E-17 112.9 15.1 196 1-222 267-518 (555)
222 KOG0644 Uncharacterized conser 99.5 3.1E-13 6.7E-18 117.4 10.6 212 27-261 229-467 (1113)
223 PRK03629 tolB translocation pr 99.5 5.7E-12 1.2E-16 108.8 18.3 165 32-234 244-420 (429)
224 KOG3881 Uncharacterized conser 99.5 1.3E-12 2.8E-17 104.3 12.8 166 1-203 175-344 (412)
225 TIGR02800 propeller_TolB tol-p 99.5 2.3E-11 4.9E-16 105.4 21.5 185 29-253 188-385 (417)
226 KOG2111 Uncharacterized conser 99.5 1.7E-11 3.7E-16 95.5 18.2 159 88-264 94-258 (346)
227 KOG1538 Uncharacterized conser 99.4 1.1E-12 2.5E-17 111.5 9.9 147 90-260 14-160 (1081)
228 PRK05137 tolB translocation pr 99.4 8.6E-11 1.9E-15 102.0 21.2 207 53-297 182-415 (435)
229 PRK04922 tolB translocation pr 99.4 3E-11 6.6E-16 104.7 18.2 158 32-227 249-418 (433)
230 PRK00178 tolB translocation pr 99.4 1.8E-10 4E-15 100.0 22.9 183 29-251 197-392 (430)
231 KOG1963 WD40 repeat protein [G 99.4 6.1E-11 1.3E-15 103.9 19.2 204 34-266 164-379 (792)
232 KOG1064 RAVE (regulator of V-A 99.4 2.6E-12 5.7E-17 119.9 11.1 190 29-267 2207-2403(2439)
233 KOG1310 WD40 repeat protein [G 99.4 1.1E-12 2.5E-17 109.0 7.6 161 83-261 45-230 (758)
234 KOG0309 Conserved WD40 repeat- 99.4 4.6E-12 9.9E-17 109.0 11.4 205 27-263 111-340 (1081)
235 KOG4547 WD40 repeat-containing 99.4 5.8E-11 1.3E-15 99.8 17.3 190 43-263 5-221 (541)
236 KOG4497 Uncharacterized conser 99.4 2.7E-10 5.8E-15 89.5 19.5 151 32-218 50-238 (447)
237 KOG0974 WD-repeat protein WDR6 99.4 2.8E-11 6.1E-16 107.8 14.8 147 38-222 141-290 (967)
238 KOG2321 WD40 repeat protein [G 99.3 2.3E-11 4.9E-16 101.9 13.4 167 30-219 175-342 (703)
239 PRK02889 tolB translocation pr 99.3 9.7E-11 2.1E-15 101.2 18.0 153 32-222 241-405 (427)
240 KOG1409 Uncharacterized conser 99.3 1.3E-10 2.9E-15 91.6 16.0 207 26-263 20-271 (404)
241 PRK04792 tolB translocation pr 99.3 5.7E-10 1.2E-14 96.9 21.4 180 30-249 217-409 (448)
242 KOG1334 WD40 repeat protein [G 99.3 1.9E-11 4.2E-16 100.4 11.3 248 27-305 139-435 (559)
243 KOG0280 Uncharacterized conser 99.3 1.9E-10 4.2E-15 88.9 15.6 167 30-221 69-242 (339)
244 PRK01029 tolB translocation pr 99.3 5.3E-10 1.1E-14 96.4 20.0 201 31-264 185-405 (428)
245 KOG1354 Serine/threonine prote 99.3 5.4E-11 1.2E-15 93.8 12.2 227 30-267 84-364 (433)
246 KOG4547 WD40 repeat-containing 99.2 8.3E-10 1.8E-14 93.0 17.2 144 44-221 71-221 (541)
247 KOG2041 WD40 repeat protein [G 99.2 4.5E-10 9.9E-15 96.8 15.7 220 30-269 14-254 (1189)
248 TIGR02800 propeller_TolB tol-p 99.2 1.6E-09 3.4E-14 94.0 18.4 156 30-223 233-400 (417)
249 PRK01029 tolB translocation pr 99.2 2.6E-09 5.6E-14 92.1 18.0 165 32-227 232-410 (428)
250 PF02239 Cytochrom_D1: Cytochr 99.2 7.1E-09 1.5E-13 87.3 19.9 156 34-223 40-205 (369)
251 PRK04792 tolB translocation pr 99.2 5.1E-09 1.1E-13 91.0 18.4 158 33-228 264-433 (448)
252 KOG2315 Predicted translation 99.1 6E-09 1.3E-13 87.5 17.2 151 34-224 221-394 (566)
253 KOG4190 Uncharacterized conser 99.1 3.7E-10 8E-15 94.7 9.7 205 26-260 731-946 (1034)
254 PRK00178 tolB translocation pr 99.1 7.4E-09 1.6E-13 90.0 18.3 155 32-224 244-410 (430)
255 KOG3914 WD repeat protein WDR4 99.1 1.5E-09 3.2E-14 87.4 12.3 159 32-224 64-227 (390)
256 COG2706 3-carboxymuconate cycl 99.1 2.1E-07 4.6E-12 74.6 24.2 208 29-264 38-276 (346)
257 KOG1240 Protein kinase contain 99.1 2.3E-08 4.9E-13 91.3 20.9 197 1-221 1073-1335(1431)
258 KOG1409 Uncharacterized conser 99.1 2.2E-08 4.7E-13 79.4 17.9 177 29-220 67-270 (404)
259 KOG0280 Uncharacterized conser 99.1 1.1E-09 2.5E-14 84.7 10.2 164 26-222 161-335 (339)
260 COG4946 Uncharacterized protei 99.1 4.2E-08 9.1E-13 81.1 19.0 173 38-249 327-505 (668)
261 KOG1354 Serine/threonine prote 99.1 9.1E-09 2E-13 81.5 14.4 228 30-267 25-306 (433)
262 KOG4714 Nucleoporin [Nuclear s 99.1 1.9E-09 4.1E-14 82.1 9.9 206 44-292 102-316 (319)
263 PF02239 Cytochrom_D1: Cytochr 99.0 3.1E-08 6.7E-13 83.5 17.9 186 44-264 6-204 (369)
264 PF00400 WD40: WD domain, G-be 99.0 1E-09 2.2E-14 60.5 5.8 39 180-218 1-39 (39)
265 KOG3914 WD repeat protein WDR4 99.0 8.1E-09 1.8E-13 83.3 12.5 161 91-267 65-228 (390)
266 PLN02919 haloacid dehalogenase 99.0 1.2E-07 2.6E-12 90.2 22.3 225 32-265 625-891 (1057)
267 KOG2315 Predicted translation 99.0 2.4E-07 5.1E-12 78.1 21.3 197 29-263 164-391 (566)
268 PRK04043 tolB translocation pr 99.0 3.2E-07 7E-12 78.8 22.5 176 32-248 189-383 (419)
269 KOG4532 WD40-like repeat conta 99.0 2.9E-07 6.3E-12 70.8 19.3 190 44-266 85-286 (344)
270 PF10282 Lactonase: Lactonase, 98.9 6.5E-07 1.4E-11 75.4 22.4 201 32-262 38-275 (345)
271 KOG2695 WD40 repeat protein [G 98.9 3.5E-09 7.5E-14 83.9 7.2 145 102-268 227-382 (425)
272 PLN02919 haloacid dehalogenase 98.9 3E-07 6.6E-12 87.5 20.8 187 33-224 685-892 (1057)
273 PRK04043 tolB translocation pr 98.9 1.7E-07 3.7E-12 80.5 17.4 157 31-227 233-407 (419)
274 KOG1064 RAVE (regulator of V-A 98.9 3.7E-09 8E-14 99.7 7.5 151 31-228 2252-2407(2439)
275 KOG2041 WD40 repeat protein [G 98.9 6.3E-08 1.4E-12 84.0 13.9 225 27-270 68-345 (1189)
276 COG5170 CDC55 Serine/threonine 98.9 1E-07 2.2E-12 74.8 13.6 184 31-228 86-319 (460)
277 PF15492 Nbas_N: Neuroblastoma 98.8 1.5E-06 3.2E-11 67.8 18.6 168 33-224 46-263 (282)
278 PF10282 Lactonase: Lactonase, 98.8 1.8E-06 3.9E-11 72.7 20.8 167 31-220 144-322 (345)
279 PF04762 IKI3: IKI3 family; I 98.8 7.7E-07 1.7E-11 83.4 19.8 207 30-261 120-378 (928)
280 KOG2695 WD40 repeat protein [G 98.8 1.3E-08 2.7E-13 80.8 6.7 134 30-189 252-387 (425)
281 TIGR02658 TTQ_MADH_Hv methylam 98.8 2.1E-06 4.5E-11 71.2 19.9 206 1-224 79-334 (352)
282 COG2706 3-carboxymuconate cycl 98.8 1.1E-05 2.4E-10 64.9 22.8 212 33-264 91-323 (346)
283 KOG4532 WD40-like repeat conta 98.7 1.5E-06 3.3E-11 67.0 15.8 147 44-223 129-285 (344)
284 COG4946 Uncharacterized protei 98.7 1.6E-06 3.4E-11 72.1 16.9 146 27-209 356-507 (668)
285 KOG2314 Translation initiation 98.7 3.3E-06 7.2E-11 71.5 18.9 111 150-263 448-574 (698)
286 KOG0309 Conserved WD40 repeat- 98.7 2.2E-07 4.7E-12 81.0 10.0 204 30-263 24-233 (1081)
287 TIGR02658 TTQ_MADH_Hv methylam 98.6 7.6E-05 1.7E-09 62.1 24.2 74 38-119 53-138 (352)
288 KOG1645 RING-finger-containing 98.6 1E-06 2.2E-11 71.7 12.6 92 13-120 176-269 (463)
289 PF08450 SGL: SMP-30/Gluconola 98.6 2.2E-05 4.8E-10 62.9 20.1 189 35-262 4-213 (246)
290 PF00400 WD40: WD domain, G-be 98.6 1.2E-07 2.7E-12 52.0 4.7 38 136-176 2-39 (39)
291 COG5170 CDC55 Serine/threonine 98.6 3.1E-06 6.8E-11 66.7 13.9 229 29-267 25-314 (460)
292 KOG4714 Nucleoporin [Nuclear s 98.6 5.4E-07 1.2E-11 69.1 8.8 208 32-262 38-254 (319)
293 PF07433 DUF1513: Protein of u 98.5 3.8E-05 8.3E-10 61.8 19.1 204 30-265 4-250 (305)
294 KOG4190 Uncharacterized conser 98.5 8E-07 1.7E-11 75.2 10.1 198 28-260 782-986 (1034)
295 PF04762 IKI3: IKI3 family; I 98.5 1.5E-05 3.3E-10 74.9 19.4 211 30-263 75-334 (928)
296 KOG1920 IkappaB kinase complex 98.5 3.5E-05 7.6E-10 71.3 20.1 213 31-263 69-323 (1265)
297 PF07433 DUF1513: Protein of u 98.5 9.7E-05 2.1E-09 59.5 19.8 179 2-226 31-253 (305)
298 PF04053 Coatomer_WDAD: Coatom 98.5 3.2E-06 6.9E-11 72.7 12.2 142 32-222 34-175 (443)
299 KOG1008 Uncharacterized conser 98.4 6.1E-08 1.3E-12 83.0 0.8 202 31-263 57-276 (783)
300 PF15492 Nbas_N: Neuroblastoma 98.4 0.00018 3.9E-09 56.4 19.5 204 36-264 3-261 (282)
301 PF13360 PQQ_2: PQQ-like domai 98.4 4.1E-05 8.8E-10 61.0 16.8 181 44-265 37-233 (238)
302 TIGR03300 assembly_YfgL outer 98.4 3.9E-05 8.4E-10 65.7 17.4 175 100-298 146-342 (377)
303 PF08450 SGL: SMP-30/Gluconola 98.4 0.00025 5.3E-09 56.9 21.0 146 30-207 85-242 (246)
304 KOG2066 Vacuolar assembly/sort 98.4 2E-05 4.4E-10 69.7 15.3 181 30-263 39-234 (846)
305 TIGR03300 assembly_YfgL outer 98.4 0.00012 2.6E-09 62.7 19.9 213 44-297 66-300 (377)
306 PF11768 DUF3312: Protein of u 98.4 1.4E-05 3.1E-10 68.5 13.9 73 29-119 258-331 (545)
307 KOG0882 Cyclophilin-related pe 98.4 7.1E-06 1.5E-10 67.8 11.5 206 28-265 7-234 (558)
308 KOG1832 HIV-1 Vpr-binding prot 98.3 3.5E-07 7.7E-12 81.4 3.7 189 27-265 1098-1294(1516)
309 COG5354 Uncharacterized protei 98.3 0.00034 7.4E-09 59.1 20.3 208 32-263 73-349 (561)
310 KOG1920 IkappaB kinase complex 98.3 8.5E-05 1.8E-09 68.9 17.8 172 30-223 109-325 (1265)
311 KOG1912 WD40 repeat protein [G 98.3 4.5E-05 9.8E-10 67.5 15.3 155 29-219 14-185 (1062)
312 KOG2066 Vacuolar assembly/sort 98.3 4.6E-05 9.9E-10 67.6 15.1 140 42-221 83-234 (846)
313 KOG2314 Translation initiation 98.3 2.2E-05 4.7E-10 66.8 12.6 140 33-209 213-365 (698)
314 KOG1912 WD40 repeat protein [G 98.3 6.7E-05 1.5E-09 66.4 15.7 201 28-263 53-305 (1062)
315 KOG1275 PAB-dependent poly(A) 98.3 2.6E-05 5.7E-10 70.0 13.4 149 33-220 180-342 (1118)
316 PF11768 DUF3312: Protein of u 98.3 5.5E-06 1.2E-10 71.0 8.8 72 149-223 261-332 (545)
317 KOG1275 PAB-dependent poly(A) 98.2 2.3E-05 4.9E-10 70.5 11.5 177 44-260 148-340 (1118)
318 PF13360 PQQ_2: PQQ-like domai 98.1 0.00022 4.8E-09 56.7 15.0 139 52-224 2-144 (238)
319 smart00320 WD40 WD40 repeats. 98.1 1.8E-05 4E-10 42.4 5.9 39 180-218 2-40 (40)
320 KOG2114 Vacuolar assembly/sort 98.0 0.00067 1.5E-08 61.0 17.4 159 37-223 30-204 (933)
321 KOG0882 Cyclophilin-related pe 98.0 8.5E-05 1.8E-09 61.7 10.6 164 29-224 52-235 (558)
322 KOG3621 WD40 repeat-containing 98.0 0.00048 1E-08 60.5 15.6 120 29-179 32-155 (726)
323 COG5354 Uncharacterized protei 98.0 0.0004 8.7E-09 58.7 14.4 111 87-219 31-159 (561)
324 KOG1008 Uncharacterized conser 97.9 2.8E-06 6E-11 73.3 0.8 163 27-220 99-275 (783)
325 PF03178 CPSF_A: CPSF A subuni 97.9 0.0034 7.3E-08 52.5 19.0 184 1-221 4-203 (321)
326 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0047 1E-07 48.2 17.7 147 40-222 20-167 (354)
327 COG0823 TolB Periplasmic compo 97.9 0.00081 1.8E-08 57.9 15.3 157 30-223 192-361 (425)
328 PF06977 SdiA-regulated: SdiA- 97.8 0.0057 1.2E-07 48.6 17.9 167 30-222 21-203 (248)
329 COG0823 TolB Periplasmic compo 97.8 0.00041 8.8E-09 59.7 12.2 140 33-209 240-388 (425)
330 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0024 5.2E-08 43.2 12.6 102 33-173 2-109 (111)
331 PF08596 Lgl_C: Lethal giant l 97.8 0.0017 3.7E-08 55.4 14.9 213 32-264 3-292 (395)
332 PRK11138 outer membrane biogen 97.8 0.0025 5.5E-08 54.9 16.2 211 44-297 121-356 (394)
333 KOG3621 WD40 repeat-containing 97.7 0.00028 6E-09 62.0 9.6 117 87-221 32-155 (726)
334 PRK11138 outer membrane biogen 97.7 0.0075 1.6E-07 52.0 18.6 225 44-297 70-315 (394)
335 KOG2444 WD40 repeat protein [G 97.7 0.00013 2.9E-09 55.4 6.1 64 159-222 113-179 (238)
336 KOG2114 Vacuolar assembly/sort 97.7 0.0042 9.1E-08 56.2 16.1 132 29-192 124-258 (933)
337 KOG4640 Anaphase-promoting com 97.7 0.00025 5.5E-09 61.5 8.2 72 150-223 23-95 (665)
338 PRK02888 nitrous-oxide reducta 97.6 0.0093 2E-07 53.1 17.6 109 96-221 284-405 (635)
339 KOG1645 RING-finger-containing 97.6 0.00028 6E-09 57.9 7.7 83 136-222 184-268 (463)
340 KOG3617 WD40 and TPR repeat-co 97.6 0.00018 4E-09 64.5 6.3 108 92-220 19-131 (1416)
341 KOG4640 Anaphase-promoting com 97.5 0.00072 1.6E-08 58.8 8.7 93 88-200 20-115 (665)
342 PF08553 VID27: VID27 cytoplas 97.4 0.0093 2E-07 54.9 15.5 71 30-117 577-647 (794)
343 PF08553 VID27: VID27 cytoplas 97.4 0.0044 9.6E-08 56.9 13.3 143 44-219 494-646 (794)
344 smart00320 WD40 WD40 repeats. 97.4 0.00053 1.1E-08 36.3 4.7 37 137-176 4-40 (40)
345 KOG1832 HIV-1 Vpr-binding prot 97.4 0.00027 5.8E-09 63.9 4.8 127 133-267 1089-1219(1516)
346 PF12894 Apc4_WD40: Anaphase-p 97.3 0.00095 2.1E-08 37.7 5.2 33 30-64 11-43 (47)
347 PF04841 Vps16_N: Vps16, N-ter 97.3 0.036 7.9E-07 47.9 17.3 62 157-222 187-248 (410)
348 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.025 5.3E-07 38.4 12.5 100 91-216 2-110 (111)
349 PRK02888 nitrous-oxide reducta 97.3 0.024 5.2E-07 50.5 15.9 92 169-263 295-405 (635)
350 COG3386 Gluconolactonase [Carb 97.3 0.046 1E-06 45.1 16.8 111 86-209 160-274 (307)
351 COG3391 Uncharacterized conser 97.2 0.1 2.3E-06 44.7 19.9 157 32-224 117-287 (381)
352 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0015 3.2E-08 36.9 5.2 35 190-224 11-45 (47)
353 KOG2395 Protein involved in va 97.2 0.0056 1.2E-07 52.5 10.8 142 45-219 348-499 (644)
354 PRK13616 lipoprotein LpqB; Pro 97.2 0.058 1.3E-06 48.8 17.5 66 150-218 450-523 (591)
355 PF04053 Coatomer_WDAD: Coatom 97.2 0.0074 1.6E-07 52.3 11.5 182 31-262 69-262 (443)
356 COG3391 Uncharacterized conser 97.2 0.13 2.8E-06 44.1 19.5 194 33-264 76-285 (381)
357 KOG2079 Vacuolar assembly/sort 97.1 0.002 4.3E-08 59.6 8.0 99 100-218 99-201 (1206)
358 PF00780 CNH: CNH domain; Int 97.1 0.062 1.3E-06 43.8 16.3 158 44-227 8-172 (275)
359 PF08596 Lgl_C: Lethal giant l 97.1 0.14 3E-06 44.0 19.0 173 30-223 86-293 (395)
360 PHA02713 hypothetical protein; 97.1 0.047 1E-06 49.3 16.2 90 171-262 433-533 (557)
361 KOG3617 WD40 and TPR repeat-co 97.0 0.00066 1.4E-08 61.1 3.5 107 153-262 21-131 (1416)
362 KOG2079 Vacuolar assembly/sort 97.0 0.0062 1.3E-07 56.5 9.5 100 44-176 100-201 (1206)
363 PF03178 CPSF_A: CPSF A subuni 96.9 0.13 2.8E-06 43.0 16.5 153 29-218 87-263 (321)
364 KOG4499 Ca2+-binding protein R 96.9 0.12 2.6E-06 40.0 14.3 105 91-207 160-271 (310)
365 PF06433 Me-amine-dh_H: Methyl 96.8 0.23 4.9E-06 41.1 18.0 159 34-223 39-216 (342)
366 PF02897 Peptidase_S9_N: Proly 96.6 0.42 9E-06 41.6 19.4 159 32-223 125-312 (414)
367 KOG4441 Proteins containing BT 96.6 0.44 9.5E-06 43.2 18.3 185 33-255 325-534 (571)
368 KOG4441 Proteins containing BT 96.5 0.2 4.4E-06 45.3 15.5 218 44-298 286-535 (571)
369 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.026 5.6E-07 47.9 9.5 102 157-260 1-129 (353)
370 PRK13616 lipoprotein LpqB; Pro 96.4 0.12 2.5E-06 46.9 13.6 102 89-216 350-472 (591)
371 COG3490 Uncharacterized protei 96.4 0.36 7.8E-06 38.7 14.9 156 36-225 119-315 (366)
372 PF14870 PSII_BNR: Photosynthe 96.3 0.2 4.3E-06 41.2 13.3 155 30-217 144-301 (302)
373 PF12234 Rav1p_C: RAVE protein 96.3 0.22 4.7E-06 45.0 14.5 110 91-219 32-155 (631)
374 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.02 4.3E-07 48.6 7.8 92 97-209 1-119 (353)
375 KOG2444 WD40 repeat protein [G 96.3 0.0056 1.2E-07 46.8 3.8 106 158-263 68-178 (238)
376 KOG4649 PQQ (pyrrolo-quinoline 96.2 0.31 6.7E-06 38.5 12.8 65 159-223 62-126 (354)
377 cd00216 PQQ_DH Dehydrogenases 96.1 0.91 2E-05 40.5 18.8 68 157-224 225-323 (488)
378 TIGR02604 Piru_Ver_Nterm putat 96.1 0.34 7.5E-06 41.4 14.3 157 32-211 15-204 (367)
379 PF04841 Vps16_N: Vps16, N-ter 96.1 0.73 1.6E-05 40.0 16.3 31 89-119 81-111 (410)
380 PF14727 PHTB1_N: PTHB1 N-term 96.0 0.88 1.9E-05 39.3 16.8 162 39-219 33-203 (418)
381 COG3490 Uncharacterized protei 96.0 0.55 1.2E-05 37.7 13.5 102 91-209 70-180 (366)
382 PHA02713 hypothetical protein; 96.0 0.53 1.1E-05 42.7 15.6 136 159-296 351-523 (557)
383 PF05096 Glu_cyclase_2: Glutam 96.0 0.62 1.3E-05 37.2 16.2 156 31-224 45-207 (264)
384 PF15390 DUF4613: Domain of un 96.0 0.46 9.9E-06 42.1 14.1 155 31-221 20-187 (671)
385 cd00216 PQQ_DH Dehydrogenases 95.9 1.2 2.5E-05 39.8 19.5 193 44-265 62-322 (488)
386 KOG4499 Ca2+-binding protein R 95.9 0.17 3.6E-06 39.3 10.0 108 34-165 161-271 (310)
387 PF10313 DUF2415: Uncharacteri 95.8 0.047 1E-06 29.9 5.0 31 32-62 2-34 (43)
388 PF07569 Hira: TUP1-like enhan 95.8 0.11 2.3E-06 40.7 9.1 79 38-118 18-96 (219)
389 PF05694 SBP56: 56kDa selenium 95.7 0.65 1.4E-05 39.8 13.8 155 39-222 138-344 (461)
390 PF06433 Me-amine-dh_H: Methyl 95.7 0.98 2.1E-05 37.5 15.6 165 40-224 144-324 (342)
391 PHA03098 kelch-like protein; P 95.6 0.81 1.8E-05 41.4 15.5 67 159-227 389-471 (534)
392 COG3204 Uncharacterized protei 95.6 0.96 2.1E-05 36.5 14.2 170 30-223 85-266 (316)
393 KOG2395 Protein involved in va 95.5 0.7 1.5E-05 40.3 13.4 70 32-118 432-501 (644)
394 COG3386 Gluconolactonase [Carb 95.5 1.2 2.7E-05 36.8 18.8 191 35-262 29-243 (307)
395 KOG2377 Uncharacterized conser 95.4 1.1 2.3E-05 38.6 13.9 121 85-222 63-187 (657)
396 PF10168 Nup88: Nuclear pore c 95.4 0.48 1E-05 44.0 13.0 72 149-221 86-180 (717)
397 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 0.61 1.3E-05 40.2 12.2 87 85-188 304-408 (415)
398 PF14583 Pectate_lyase22: Olig 95.1 1.8 4E-05 36.7 15.6 155 33-221 38-223 (386)
399 KOG1916 Nuclear protein, conta 94.9 0.03 6.5E-07 51.4 3.8 158 32-221 182-375 (1283)
400 KOG1916 Nuclear protein, conta 94.8 0.024 5.3E-07 52.0 3.1 163 28-221 130-324 (1283)
401 PF02897 Peptidase_S9_N: Proly 94.7 1.3 2.9E-05 38.5 13.5 112 90-222 125-262 (414)
402 PF06977 SdiA-regulated: SdiA- 94.7 1.8 3.9E-05 34.6 18.4 171 32-216 66-246 (248)
403 PF07569 Hira: TUP1-like enhan 94.6 0.26 5.5E-06 38.6 8.0 70 157-227 19-102 (219)
404 KOG3630 Nuclear pore complex, 94.6 0.57 1.2E-05 44.7 11.0 122 89-223 101-231 (1405)
405 PF10647 Gmad1: Lipoprotein Lp 94.5 2 4.4E-05 34.5 19.5 160 32-223 25-200 (253)
406 PHA02790 Kelch-like protein; P 94.4 3.3 7.1E-05 36.9 15.3 64 159-227 362-430 (480)
407 COG5167 VID27 Protein involved 94.3 1.2 2.6E-05 38.9 11.7 141 45-220 482-632 (776)
408 PHA03098 kelch-like protein; P 94.3 2 4.2E-05 38.9 14.0 67 159-227 437-518 (534)
409 PF05694 SBP56: 56kDa selenium 94.2 3.3 7.2E-05 35.7 17.9 205 44-270 88-350 (461)
410 PF10313 DUF2415: Uncharacteri 94.0 0.22 4.7E-06 27.4 4.5 31 191-221 1-34 (43)
411 PRK13684 Ycf48-like protein; P 94.0 3.3 7.2E-05 34.9 16.5 155 30-219 172-330 (334)
412 PF10168 Nup88: Nuclear pore c 94.0 4.4 9.5E-05 37.9 15.5 87 89-179 85-180 (717)
413 KOG3630 Nuclear pore complex, 93.9 0.75 1.6E-05 44.0 10.4 152 31-207 101-260 (1405)
414 PF14583 Pectate_lyase22: Olig 93.8 3.7 8.1E-05 34.9 18.3 155 32-219 189-380 (386)
415 KOG4460 Nuclear pore complex, 93.7 1.1 2.3E-05 39.3 10.2 72 150-222 106-200 (741)
416 PF14870 PSII_BNR: Photosynthe 93.3 4.1 8.8E-05 33.7 17.4 109 87-216 143-257 (302)
417 PF07995 GSDH: Glucose / Sorbo 93.0 3.3 7.2E-05 34.8 12.3 110 90-212 3-135 (331)
418 PF12234 Rav1p_C: RAVE protein 92.9 2.1 4.6E-05 39.0 11.4 108 150-260 32-154 (631)
419 TIGR02604 Piru_Ver_Nterm putat 92.9 3.3 7.1E-05 35.5 12.4 104 89-209 14-142 (367)
420 KOG1898 Splicing factor 3b, su 92.5 10 0.00023 36.4 17.1 106 94-220 939-1048(1205)
421 PF12657 TFIIIC_delta: Transcr 92.5 1.2 2.6E-05 33.5 8.2 31 191-221 86-122 (173)
422 PF13449 Phytase-like: Esteras 92.4 5.8 0.00013 33.3 17.1 180 30-220 19-249 (326)
423 PF05096 Glu_cyclase_2: Glutam 92.2 5.2 0.00011 32.2 18.3 130 44-209 101-249 (264)
424 TIGR02276 beta_rpt_yvtn 40-res 91.5 1.3 2.8E-05 23.9 6.0 40 158-198 1-41 (42)
425 KOG2377 Uncharacterized conser 91.5 3.7 7.9E-05 35.5 10.5 121 29-180 65-187 (657)
426 KOG2247 WD40 repeat-containing 91.4 0.031 6.7E-07 47.8 -1.5 147 33-218 37-186 (615)
427 PF15390 DUF4613: Domain of un 91.4 2.8 6.1E-05 37.4 10.0 71 34-119 116-188 (671)
428 PF14761 HPS3_N: Hermansky-Pud 91.2 5.8 0.00012 30.7 15.8 48 45-106 30-77 (215)
429 COG3204 Uncharacterized protei 91.2 7.2 0.00016 31.8 18.0 117 87-221 84-211 (316)
430 PF14761 HPS3_N: Hermansky-Pud 91.0 6.1 0.00013 30.6 11.8 104 100-222 29-165 (215)
431 PRK13684 Ycf48-like protein; P 90.9 8.9 0.00019 32.4 15.1 107 89-216 173-284 (334)
432 KOG1900 Nuclear pore complex, 90.7 5.8 0.00012 38.9 12.0 160 34-221 82-273 (1311)
433 PF10214 Rrn6: RNA polymerase 90.7 16 0.00035 34.9 18.5 128 31-179 146-277 (765)
434 PF00780 CNH: CNH domain; Int 90.7 8 0.00017 31.4 21.7 205 31-266 36-259 (275)
435 PF11635 Med16: Mediator compl 89.4 20 0.00043 34.1 16.1 67 148-215 260-345 (753)
436 PF11715 Nup160: Nucleoporin N 89.4 4.6 9.9E-05 36.7 10.3 36 150-186 217-256 (547)
437 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.4 16 0.00035 33.0 15.6 72 152-224 238-337 (527)
438 PF10647 Gmad1: Lipoprotein Lp 89.3 10 0.00022 30.6 16.4 108 90-219 25-143 (253)
439 PRK10115 protease 2; Provision 89.0 20 0.00044 33.7 20.5 196 31-262 127-344 (686)
440 KOG1897 Damage-specific DNA bi 88.8 23 0.0005 34.0 16.4 168 13-219 761-941 (1096)
441 PF11715 Nup160: Nucleoporin N 88.8 1.8 4E-05 39.2 7.4 67 158-224 156-252 (547)
442 PF14781 BBS2_N: Ciliary BBSom 88.6 6.9 0.00015 27.8 14.4 121 34-182 2-129 (136)
443 PF14655 RAB3GAP2_N: Rab3 GTPa 88.6 4.6 9.9E-05 35.0 9.1 74 149-223 309-401 (415)
444 COG5290 IkappaB kinase complex 88.5 7 0.00015 36.4 10.3 102 151-255 250-359 (1243)
445 TIGR03074 PQQ_membr_DH membran 88.5 9.8 0.00021 36.0 11.8 63 160-223 260-347 (764)
446 TIGR03118 PEPCTERM_chp_1 conse 88.4 13 0.00028 30.6 16.5 182 31-223 77-282 (336)
447 PF08728 CRT10: CRT10; InterP 88.3 22 0.00047 33.2 15.5 123 90-219 102-245 (717)
448 PHA02790 Kelch-like protein; P 88.0 19 0.00042 32.2 13.2 61 159-224 407-474 (480)
449 COG3823 Glutamine cyclotransfe 88.0 11 0.00023 29.2 11.7 129 44-208 102-247 (262)
450 PRK10115 protease 2; Provision 87.8 24 0.00053 33.2 16.1 109 89-219 127-254 (686)
451 PF07676 PD40: WD40-like Beta 87.4 3 6.4E-05 22.1 5.4 29 189-217 7-38 (39)
452 PLN00033 photosystem II stabil 87.3 19 0.00041 31.3 15.0 71 149-223 282-359 (398)
453 COG4257 Vgb Streptogramin lyas 86.6 16 0.00034 29.7 17.1 196 32-263 63-263 (353)
454 PF08728 CRT10: CRT10; InterP 86.5 28 0.00061 32.5 13.5 133 29-177 99-245 (717)
455 KOG2280 Vacuolar assembly/sort 85.8 30 0.00066 32.2 17.1 53 51-119 62-114 (829)
456 PLN00033 photosystem II stabil 85.5 24 0.00051 30.7 17.1 111 88-217 280-396 (398)
457 PF03022 MRJP: Major royal jel 85.4 19 0.00042 29.6 18.5 195 2-208 37-253 (287)
458 PF07676 PD40: WD40-like Beta 84.1 4.6 9.9E-05 21.3 4.8 28 31-58 9-38 (39)
459 PF12657 TFIIIC_delta: Transcr 84.0 10 0.00022 28.4 8.1 30 89-118 86-122 (173)
460 COG4590 ABC-type uncharacteriz 83.3 12 0.00027 32.5 8.8 163 30-223 220-389 (733)
461 KOG1520 Predicted alkaloid syn 83.2 28 0.0006 29.6 10.9 53 165-218 194-248 (376)
462 KOG2280 Vacuolar assembly/sort 83.1 40 0.00087 31.5 14.4 70 150-223 219-290 (829)
463 TIGR03075 PQQ_enz_alc_DH PQQ-d 83.0 36 0.00079 30.9 19.0 119 44-186 70-197 (527)
464 KOG4460 Nuclear pore complex, 82.7 23 0.00049 31.6 10.3 89 30-119 103-200 (741)
465 TIGR03074 PQQ_membr_DH membran 82.3 47 0.001 31.7 16.4 55 169-223 413-480 (764)
466 PF12341 DUF3639: Protein of u 81.7 4.6 0.0001 19.7 3.5 25 32-59 3-27 (27)
467 KOG2247 WD40 repeat-containing 80.3 0.49 1.1E-05 40.9 -0.2 101 30-164 74-175 (615)
468 smart00564 PQQ beta-propeller 80.1 5.7 0.00012 19.9 4.0 25 161-185 7-31 (33)
469 PF12768 Rax2: Cortical protei 78.4 9.2 0.0002 31.3 6.4 61 169-229 15-81 (281)
470 COG4590 ABC-type uncharacteriz 76.5 17 0.00037 31.7 7.6 163 89-266 221-390 (733)
471 PF14727 PHTB1_N: PTHB1 N-term 76.1 54 0.0012 28.7 13.7 60 162-223 302-363 (418)
472 KOG1900 Nuclear pore complex, 76.0 53 0.0012 32.8 11.4 136 106-263 96-273 (1311)
473 TIGR03118 PEPCTERM_chp_1 conse 75.9 33 0.00072 28.3 8.7 71 150-221 25-119 (336)
474 COG5167 VID27 Protein involved 75.4 13 0.00027 33.0 6.6 61 44-119 574-634 (776)
475 PF03088 Str_synth: Strictosid 75.0 21 0.00045 23.4 8.8 43 166-209 33-75 (89)
476 KOG1896 mRNA cleavage and poly 74.6 97 0.0021 31.0 13.7 156 44-225 1047-1218(1366)
477 TIGR03606 non_repeat_PQQ dehyd 73.9 64 0.0014 28.6 13.3 31 89-119 30-61 (454)
478 PF01011 PQQ: PQQ enzyme repea 73.2 12 0.00025 19.7 4.5 27 162-188 2-28 (38)
479 COG5276 Uncharacterized conser 73.0 52 0.0011 27.1 13.0 165 113-296 68-234 (370)
480 PF11635 Med16: Mediator compl 72.5 24 0.00051 33.7 8.4 82 30-112 259-345 (753)
481 PF14781 BBS2_N: Ciliary BBSom 71.6 34 0.00074 24.4 10.3 67 154-223 5-84 (136)
482 PF12768 Rax2: Cortical protei 70.1 60 0.0013 26.7 12.6 53 52-119 15-74 (281)
483 PF14779 BBS1: Ciliary BBSome 69.9 33 0.00071 27.6 7.4 74 28-113 174-254 (257)
484 PLN02153 epithiospecifier prot 69.5 68 0.0015 27.1 16.8 23 44-66 87-114 (341)
485 KOG3522 Predicted guanine nucl 68.6 50 0.0011 31.3 9.1 68 148-220 627-697 (925)
486 KOG1983 Tomosyn and related SN 68.1 46 0.001 32.9 9.4 35 29-64 34-68 (993)
487 PF01731 Arylesterase: Arylest 67.7 31 0.00067 22.4 6.4 50 169-221 35-85 (86)
488 PLN02193 nitrile-specifier pro 67.7 92 0.002 27.8 15.7 64 159-224 328-414 (470)
489 COG1520 FOG: WD40-like repeat 65.3 83 0.0018 26.9 9.8 104 99-223 68-174 (370)
490 PF13570 PQQ_3: PQQ-like domai 65.1 14 0.0003 19.6 3.3 21 159-179 20-40 (40)
491 PF01436 NHL: NHL repeat; Int 64.2 16 0.00034 17.7 4.5 25 33-58 4-28 (28)
492 PF08801 Nucleoporin_N: Nup133 62.4 1.1E+02 0.0024 26.8 15.3 30 192-221 191-220 (422)
493 PF10214 Rrn6: RNA polymerase 62.0 1.5E+02 0.0033 28.5 19.8 132 86-224 77-236 (765)
494 PF14269 Arylsulfotran_2: Aryl 60.5 98 0.0021 25.7 14.0 72 89-177 144-219 (299)
495 KOG3616 Selective LIM binding 60.4 15 0.00033 34.2 4.3 33 191-223 15-47 (1636)
496 PF07995 GSDH: Glucose / Sorbo 59.0 1.1E+02 0.0024 25.8 18.8 66 150-215 255-330 (331)
497 TIGR03547 muta_rot_YjhT mutatr 56.7 1.2E+02 0.0026 25.6 15.9 23 44-66 65-98 (346)
498 COG4257 Vgb Streptogramin lyas 56.2 1.1E+02 0.0024 25.1 16.1 117 88-224 147-266 (353)
499 KOG1898 Splicing factor 3b, su 55.0 2.3E+02 0.0049 28.2 14.3 53 169-224 911-966 (1205)
500 PF07250 Glyoxal_oxid_N: Glyox 54.4 1.1E+02 0.0024 24.5 12.5 32 155-188 176-207 (243)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-42 Score=270.74 Aligned_cols=249 Identities=21% Similarity=0.387 Sum_probs=209.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+|+||+.+.. +.+.++ ||..-|.|++|+|++ ..||+|+.||+|++||..+++ +.
T Consensus 139 vR~WD~~TeT--p~~t~K---------gH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~--------------~~ 192 (480)
T KOG0271|consen 139 VRLWDLDTET--PLFTCK---------GHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQ--------------QI 192 (480)
T ss_pred EEeeccCCCC--cceeec---------CCccEEEEEEECCCc-chhhccccCCeEEEecCCCCC--------------cc
Confidence 5899998754 566664 588999999999999 899999999999999999998 33
Q ss_pred cccccCCCccEEEEEEcc-----CCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEE
Q 021453 81 RHLIGKNNIHITGLAYSN-----TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 154 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~-----~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 154 (312)
-..+.+|...|++++|.| .+++||+++ ||.++|||+..+ .++..+.+|..+ |+|+.
T Consensus 193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----------------~~~~~lsgHT~~--VTCvr 254 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----------------TCVRTLSGHTAS--VTCVR 254 (480)
T ss_pred cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----------------eEEEEeccCccc--eEEEE
Confidence 333489999999999977 446888875 999999999887 788999999977 99999
Q ss_pred EecCCCCEEEEeccCceEEEEeccCCeeEE--------------------------------------------------
Q 021453 155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-------------------------------------------------- 184 (312)
Q Consensus 155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-------------------------------------------------- 184 (312)
| -...+|++|+.|++|++|+...|+++.
T Consensus 255 w--GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 255 W--GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred E--cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 8 345688999999999999866543321
Q ss_pred -----------------------------EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhh
Q 021453 185 -----------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI 234 (312)
Q Consensus 185 -----------------------------~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~ 234 (312)
.+.+|..-|+.+.|||+++++|+++.|+.|++|+-++++ +.++.+|...+
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence 344677889999999999999999999999999999987 58899999999
Q ss_pred hhhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEEeecCCCCCCCCCCCcee
Q 021453 235 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR 307 (312)
Q Consensus 235 ~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 307 (312)
++.+ |+.+.+++++++.|.++++|++++. ++ ..++++|+|+ ||.+|.+.+......+|-++
T Consensus 413 Yqva-wsaDsRLlVS~SkDsTLKvw~V~tk-Kl--------~~DLpGh~DE--Vf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 413 YQVA-WSADSRLLVSGSKDSTLKVWDVRTK-KL--------KQDLPGHADE--VFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred EEEE-eccCccEEEEcCCCceEEEEEeeee-ee--------cccCCCCCce--EEEEEecCCCceeecCCCce
Confidence 8776 7899999999999999999999877 44 5799999999 99999876665555555444
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=256.04 Aligned_cols=225 Identities=16% Similarity=0.251 Sum_probs=198.3
Q ss_pred CCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 27 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
.||...|.++.|+|. ....+|+++.||++++|++.+.. ++.. +.+|...|..++|+|+|++|++
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~---------~l~~------l~gH~~RVs~VafHPsG~~L~T 278 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET---------PLQD------LEGHLARVSRVAFHPSGKFLGT 278 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCCc---------chhh------hhcchhhheeeeecCCCceeee
Confidence 369999999999997 34799999999999999998764 2222 2899999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
++ |.+-++||++++ ..+....||... |.+++| .++|..+++|+.|..-+|||+++++++.
T Consensus 279 asfD~tWRlWD~~tk----------------~ElL~QEGHs~~--v~~iaf-~~DGSL~~tGGlD~~~RvWDlRtgr~im 339 (459)
T KOG0272|consen 279 ASFDSTWRLWDLETK----------------SELLLQEGHSKG--VFSIAF-QPDGSLAATGGLDSLGRVWDLRTGRCIM 339 (459)
T ss_pred cccccchhhcccccc----------------hhhHhhcccccc--cceeEe-cCCCceeeccCccchhheeecccCcEEE
Confidence 75 999999999998 677788899976 999999 9999999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEec
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+.+|...|.+|+|+|+|..|||||.|++++|||++... +.++++|.+-+ ....+.+ .+.+|+|++.|+++++|.-.
T Consensus 340 ~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlV-S~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 340 FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLV-SQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchh-hheEecccCCeEEEEcccCcceeeecCC
Confidence 999999999999999999999999999999999999876 57888888877 4455665 79999999999999999866
Q ss_pred ccCccceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021453 263 RRQTLAYRERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
..+. ...+++|+++ |+.+|.+.+.
T Consensus 419 ~~~~---------~ksLaGHe~k--V~s~Dis~d~ 442 (459)
T KOG0272|consen 419 TWSP---------LKSLAGHEGK--VISLDISPDS 442 (459)
T ss_pred Cccc---------chhhcCCccc--eEEEEeccCC
Confidence 5543 4688888888 9999986644
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=245.63 Aligned_cols=197 Identities=17% Similarity=0.281 Sum_probs=181.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
||..+|..++|+|+| ++|+|++.|.+-++||+.++. ......+|...|.+++|+++|.++++|+
T Consensus 259 gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~---------------ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKS---------------ELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred cchhhheeeeecCCC-ceeeecccccchhhcccccch---------------hhHhhcccccccceeEecCCCceeeccC
Confidence 589999999999999 899999999999999999886 2233389999999999999999999975
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|..-+|||++++ +++..+.+|... |.+|+| +|+|..|++|+.|++++|||++..+.+.++
T Consensus 323 lD~~~RvWDlRtg----------------r~im~L~gH~k~--I~~V~f-sPNGy~lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 323 LDSLGRVWDLRTG----------------RCIMFLAGHIKE--ILSVAF-SPNGYHLATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred ccchhheeecccC----------------cEEEEecccccc--eeeEeE-CCCceEEeecCCCCcEEEeeecccccceec
Confidence 999999999999 899999999966 999999 999999999999999999999998999999
Q ss_pred ecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 187 VGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 187 ~~~~~~v~~v~~~p-~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.+|..-|+.|.|+| .|.+|+|++.|++++||...+.. +.++.+|...++.+. .++++..+++++.|.++++|.
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~D-is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLD-ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEE-eccCCceEEEeccCceeeecc
Confidence 99999999999999 67779999999999999988876 588999999997765 788999999999999999995
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.7e-37 Score=258.52 Aligned_cols=203 Identities=16% Similarity=0.281 Sum_probs=186.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-||.++|+...|+|+. ++|++++.|+++|+|.+.+.. +.... .+|..+|..+.|+|.|.++|++
T Consensus 448 ~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s--------------~~V~y-~GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWS--------------CLVIY-KGHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred ecCCCceeeeeecccc-cceeeccCCcceeeeecccce--------------eEEEe-cCCCcceeeEEecCCceEEEec
Confidence 3899999999999998 899999999999999999886 33333 7999999999999999999997
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+ |++-++|..... ++.+.+.+|.+. |.|+.| +|+..|+++|+.|.+|++||..+|..++.
T Consensus 512 s~D~tArLWs~d~~----------------~PlRifaghlsD--V~cv~F-HPNs~Y~aTGSsD~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 512 SHDQTARLWSTDHN----------------KPLRIFAGHLSD--VDCVSF-HPNSNYVATGSSDRTVRLWDVSTGNSVRI 572 (707)
T ss_pred CCCceeeeeecccC----------------Cchhhhcccccc--cceEEE-CCcccccccCCCCceEEEEEcCCCcEEEE
Confidence 5 999999999877 799999999987 999999 99999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
|.+|.++|.+++|||+|++|++|+.|+.|++||+.++++ ..+.+|... +....++.++..|++++.|..|++||+...
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-i~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-IYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc-eeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999874 778888444 466668999999999999999999998765
Q ss_pred C
Q 021453 265 Q 265 (312)
Q Consensus 265 ~ 265 (312)
.
T Consensus 652 ~ 652 (707)
T KOG0263|consen 652 I 652 (707)
T ss_pred c
Confidence 3
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-35 Score=231.39 Aligned_cols=238 Identities=15% Similarity=0.198 Sum_probs=195.2
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
.+||.++|.|+.|+|++ ..|++|+.|.++|+||+.+.. +....++|...|.+++|+|||+.||+
T Consensus 111 ~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeT---------------p~~t~KgH~~WVlcvawsPDgk~iAS 174 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTET---------------PLFTCKGHKNWVLCVAWSPDGKKIAS 174 (480)
T ss_pred cCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCC---------------cceeecCCccEEEEEEECCCcchhhc
Confidence 37999999999999998 899999999999999999875 33333899999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe----cCCCCEEEEeccCceEEEEeccCC
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF----GPNDEYVMSGSDCGHLFIWKKKGG 180 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~----s~~~~~l~~~~~dg~v~iwd~~~~ 180 (312)
+. ||.|++||..++. ...+.+.+|... |++++|. .|..++|++++.||.++|||+..+
T Consensus 175 G~~dg~I~lwdpktg~---------------~~g~~l~gH~K~--It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKTGQ---------------QIGRALRGHKKW--ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred cccCCeEEEecCCCCC---------------cccccccCcccc--eeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 75 9999999998873 566889999966 9999992 346789999999999999999999
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhh----------ccCC-------
Q 021453 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN----------KQGR------- 242 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~----------~~~~------- 242 (312)
+++..+.+|+.+|+|+.|--+ .++++++.|++|++|+...+. +..+.+|...+-.++ .+.+
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 999999999999999999543 479999999999999987765 355666654442211 1111
Q ss_pred ------------------CCceeEEecCCceEEEEEecccC----------ccc-eeEeecCCCccCCCCCCCeEEEeec
Q 021453 243 ------------------EDHSRITLTPDVIMHVLRLQRRQ----------TLA-YRERRYNAADFESDEEEGETYLLGF 293 (312)
Q Consensus 243 ------------------~~~~l~s~~~d~~i~i~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (312)
++..+++++.|.++.+|+-.... +++ ...++|++..+++..-+-.|-+|+.
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 23569999999999999854322 222 2388999999999988888988888
Q ss_pred CCCC
Q 021453 294 SDSD 297 (312)
Q Consensus 294 ~~~~ 297 (312)
.+|.
T Consensus 397 ~tGk 400 (480)
T KOG0271|consen 397 RTGK 400 (480)
T ss_pred CCcc
Confidence 7775
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=209.38 Aligned_cols=220 Identities=14% Similarity=0.269 Sum_probs=184.6
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
||+||++++++.++.... +|...|+++.|..+| +..++|++||+++|||++... +.
T Consensus 63 vRlyD~~S~np~Pv~t~e---------~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~--------------~q 118 (311)
T KOG0315|consen 63 VRLYDLNSNNPNPVATFE---------GHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLS--------------CQ 118 (311)
T ss_pred eEEEEccCCCCCceeEEe---------ccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcc--------------cc
Confidence 689999999988877653 478899999999999 899999999999999999855 22
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
+. ..|..+|+++..+|+..-|+++ .+|.|++||+... .+...+..... ..|.++.. .|+
T Consensus 119 R~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~----------------~c~~~liPe~~-~~i~sl~v-~~d 178 (311)
T KOG0315|consen 119 RN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN----------------SCTHELIPEDD-TSIQSLTV-MPD 178 (311)
T ss_pred hh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC----------------ccccccCCCCC-cceeeEEE-cCC
Confidence 22 3467899999999998877777 6999999999875 34333332222 44999998 899
Q ss_pred CCEEEEeccCceEEEEeccCC------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-CC-CCCCCCh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGG------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DF-PPLPDNA 231 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~-~~-~~~~~~~ 231 (312)
|.+|+.+...|+.++|++-+. +++..++.|.+.+..+.+||++++||++|.|.+++||+..+. +. ..+.+|.
T Consensus 179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 999999999999999997643 466788899999999999999999999999999999999887 32 4567788
Q ss_pred hhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021453 232 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 232 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
..+..++ ++.++.+++++++|+..++|++..+.
T Consensus 259 rWvWdc~-FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 259 RWVWDCA-FSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ceEEeee-eccCccEEEecCCCCceeecccccCc
Confidence 8887766 78899999999999999999988764
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-32 Score=207.22 Aligned_cols=240 Identities=15% Similarity=0.211 Sum_probs=197.7
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.+|++.|+.++..+.++.++++++.|.++.+|++..... ..+.+ ...+.+|...|..++.+++|++.+++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~----~~G~~------~r~~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI----KYGVP------VRRLTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc----ccCce------eeeeeccceEecceEEccCCceEEec
Confidence 469999999999999889999999999999999986631 11222 23338899999999999999999987
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+ |+.+++||+.++ +..+.|.+|... |.+++| +++.+++++|+.|.+|++|+.. +.+..+
T Consensus 82 swD~~lrlWDl~~g----------------~~t~~f~GH~~d--Vlsva~-s~dn~qivSGSrDkTiklwnt~-g~ck~t 141 (315)
T KOG0279|consen 82 SWDGTLRLWDLATG----------------ESTRRFVGHTKD--VLSVAF-STDNRQIVSGSRDKTIKLWNTL-GVCKYT 141 (315)
T ss_pred cccceEEEEEecCC----------------cEEEEEEecCCc--eEEEEe-cCCCceeecCCCcceeeeeeec-ccEEEE
Confidence 4 999999999998 789999999977 999999 9999999999999999999997 455555
Q ss_pred eecC--ccceEEEEEcCC--CCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 186 MVGD--RHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 186 ~~~~--~~~v~~v~~~p~--~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
+..+ .+.|+++.|+|+ ..++++++.|++|++||+++.++ .++.+|...+ ....+++|+.+.++|+.|+.+.+||
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v-~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV-NTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE-EEEEECCCCCEEecCCCCceEEEEE
Confidence 5433 789999999998 67899999999999999999986 5566776666 5556899999999999999999999
Q ss_pred ecccCcccee---------EeecCCCccCCCCCCCeEEEeecCCCCC
Q 021453 261 LQRRQTLAYR---------ERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 261 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
++....+-+. .++|+..-+....+. .|.+||.+.+..
T Consensus 221 L~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 221 LNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAV 266 (315)
T ss_pred ccCCceeEeccCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhh
Confidence 9887543221 566666665554333 388888877643
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-33 Score=209.26 Aligned_cols=202 Identities=15% Similarity=0.196 Sum_probs=167.2
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+.||+..|..+..++++ ++.++++.|+++++||+.+++ ....+.+|...|.+++|+++.+.+++
T Consensus 59 ~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~---------------~t~~f~GH~~dVlsva~s~dn~qivS 122 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGE---------------STRRFVGHTKDVLSVAFSTDNRQIVS 122 (315)
T ss_pred eeccceEecceEEccCC-ceEEeccccceEEEEEecCCc---------------EEEEEEecCCceEEEEecCCCceeec
Confidence 35799999999999999 899999999999999999886 23333899999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCCee
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
++ |.+|.+|++... +..++........|.++.| +|+ ..+|++++.|++|++||+++.+.
T Consensus 123 GSrDkTiklwnt~g~-----------------ck~t~~~~~~~~WVscvrf-sP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 123 GSRDKTIKLWNTLGV-----------------CKYTIHEDSHREWVSCVRF-SPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CCCcceeeeeeeccc-----------------EEEEEecCCCcCcEEEEEE-cCCCCCcEEEEccCCceEEEEccCCcch
Confidence 85 999999999775 4444444432356999999 887 78999999999999999999999
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
...+.+|++.++.+++||||..+++|+.||.+.+||++.++. ..+ ++...+ ....++|+...|+. ..+..|+||++
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v-~sl~fspnrywL~~-at~~sIkIwdl 261 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIV-NSLCFSPNRYWLCA-ATATSIKIWDL 261 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeE-eeEEecCCceeEee-ccCCceEEEec
Confidence 999999999999999999999999999999999999998874 444 344444 44456665544444 44555999998
Q ss_pred ccc
Q 021453 262 QRR 264 (312)
Q Consensus 262 ~~~ 264 (312)
...
T Consensus 262 ~~~ 264 (315)
T KOG0279|consen 262 ESK 264 (315)
T ss_pred cch
Confidence 765
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.6e-31 Score=201.62 Aligned_cols=253 Identities=15% Similarity=0.162 Sum_probs=200.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||...|+++.|+++. +.+++++.||.+.|||.-+.. .. +.+.-....|...+|+|.|+++|.+
T Consensus 52 kGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~Ttn--------------K~-haipl~s~WVMtCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTN--------------KV-HAIPLPSSWVMTCAYSPSGNFVACG 115 (343)
T ss_pred cccccceeeeEecCCc-CeEEeeccCCeEEEEEccccc--------------ce-eEEecCceeEEEEEECCCCCeEEec
Confidence 4799999999999998 899999999999999998775 22 2224456789999999999999997
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
. |+...||++.+..... ..+..+.+.+|.. ++.++.| - +...|++++.|.+..+||+.+++.+..
T Consensus 116 GLdN~Csiy~ls~~d~~g----------~~~v~r~l~gHtg--ylScC~f-~-dD~~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG----------NVRVSRELAGHTG--YLSCCRF-L-DDNHILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred CcCceeEEEecccccccc----------cceeeeeecCccc--eeEEEEE-c-CCCceEecCCCceEEEEEcccceEEEE
Confidence 5 9999999998541110 0134567889985 4999999 4 467789999999999999999999999
Q ss_pred eecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 186 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p-~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
|.+|.+.|.+++++| +++.+++|+-|++.++||++.+. .++|.+|...+ ....+.|++.-+++|+.|++.+++|++.
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI-Nsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI-NSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccccc-ceEEEccCCCeeeecCCCceeEEEeecC
Confidence 999999999999999 89999999999999999999876 58899998888 5556889999999999999999999998
Q ss_pred cCcccee------------EeecCCCccCCCCCCCeEEEeecCCCCCCCCCC--Cceeeee
Q 021453 264 RQTLAYR------------ERRYNAADFESDEEEGETYLLGFSDSDASSEGG--GNQRECI 310 (312)
Q Consensus 264 ~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~ 310 (312)
.+.+... .++..+..+..+-++..+++||.-.++...... ++.-.|+
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL 321 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence 6555433 333344444455556667777766655443222 5555554
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.9e-31 Score=198.65 Aligned_cols=206 Identities=18% Similarity=0.295 Sum_probs=176.2
Q ss_pred CCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 27 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+||++++..++|+|- | .+||+++.|+.|++|+...+.- ..|...+-.+|+..|.+++|+|.|++|++
T Consensus 11 ~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s-----------~~ck~vld~~hkrsVRsvAwsp~g~~La~ 78 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDS-----------WTCKTVLDDGHKRSVRSVAWSPHGRYLAS 78 (312)
T ss_pred cCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCc-----------EEEEEeccccchheeeeeeecCCCcEEEE
Confidence 469999999999997 5 7999999999999999985320 11444455689999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC---e
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---K 181 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~---~ 181 (312)
++ |.++.||.-..+ .++++.++.||.+. |.+++| +++|++||+++.|+.|.||....+ +
T Consensus 79 aSFD~t~~Iw~k~~~--------------efecv~~lEGHEnE--VK~Vaw-s~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDG--------------EFECVATLEGHENE--VKCVAW-SASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred eeccceEEEeecCCC--------------ceeEEeeeeccccc--eeEEEE-cCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 86 999999987654 33678899999987 999999 999999999999999999998743 5
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-CCC---CCCCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021453 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 182 ~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
+...++.|+..|..+.|||...+|+++|.|.+|++|+-. ... ..++.+|...+.... +.+.+..|++++.|++++
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~-F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLA-FDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEE-ecCCCceEEEecCCcceE
Confidence 778899999999999999999999999999999999876 332 467778887775544 677788999999999999
Q ss_pred EEEec
Q 021453 258 VLRLQ 262 (312)
Q Consensus 258 i~~~~ 262 (312)
||...
T Consensus 221 Iw~~~ 225 (312)
T KOG0645|consen 221 IWRLY 225 (312)
T ss_pred eeeec
Confidence 99844
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=213.09 Aligned_cols=248 Identities=17% Similarity=0.245 Sum_probs=193.8
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++||..+-.+..++. ||.+.|.|+.|.. +.+++|++|.+|++||..++++ .
T Consensus 219 ikiWD~n~~~c~~~L~-----------GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~--------------l 270 (499)
T KOG0281|consen 219 IKIWDKNSLECLKILT-----------GHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEP--------------L 270 (499)
T ss_pred eEEeccccHHHHHhhh-----------cCCCcEEeeeccc---eEEEecCCCceEEEEeccCCch--------------h
Confidence 5778877665555544 5899999999975 6999999999999999999983 3
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ .+|.+.|..+.|+. .+++++ .|..+.+||+.... ...+.+.+.||... |..+.| +
T Consensus 271 ~tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-------------~it~rrVLvGHrAa--VNvVdf---d 329 (499)
T KOG0281|consen 271 NTL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-------------DITLRRVLVGHRAA--VNVVDF---D 329 (499)
T ss_pred hHH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-------------HHHHHHHHhhhhhh--eeeecc---c
Confidence 333 78899999999974 377776 59999999997641 11355778899977 999988 4
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 238 (312)
.+++++++.|.+|++|++.+++.++++.+|...|.|+.+ .++++++|+.|.+|++||+..+.. ..+.+|..-+ .+.
T Consensus 330 ~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv-Rci 406 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-RCI 406 (499)
T ss_pred cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhh-hhe
Confidence 679999999999999999999999999999999999887 889999999999999999999874 6677776655 443
Q ss_pred ccCCCCceeEEecCCceEEEEEecccCcc-----------------ceeEeecCCCccCCCCCCCeEEEeecCCCCCCCC
Q 021453 239 KQGREDHSRITLTPDVIMHVLRLQRRQTL-----------------AYRERRYNAADFESDEEEGETYLLGFSDSDASSE 301 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 301 (312)
--+...+++|+.||.+++||+.....+ ..+..+.+...+.+...+..+++|||.++-....
T Consensus 407 --RFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 407 --RFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred --eecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcccc
Confidence 235678999999999999998764322 1112233444454444455599999988866544
Q ss_pred C
Q 021453 302 G 302 (312)
Q Consensus 302 ~ 302 (312)
+
T Consensus 485 ~ 485 (499)
T KOG0281|consen 485 E 485 (499)
T ss_pred c
Confidence 3
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.1e-32 Score=229.53 Aligned_cols=247 Identities=16% Similarity=0.195 Sum_probs=207.2
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCC-----------------CCCcccccccccccCCCccEE
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-----------------DTPVDTFCPRHLIGKNNIHIT 92 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~i~ 92 (312)
...++|..|++++ .++|.|..|..|++|.+...++...... ....... ....+.+|.++|.
T Consensus 378 ~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~-~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG-TSRTLYGHSGPVY 455 (707)
T ss_pred CCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc-eeEEeecCCCcee
Confidence 3579999999999 7999999999999999985442211100 0000111 1222479999999
Q ss_pred EEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce
Q 021453 93 GLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH 171 (312)
Q Consensus 93 ~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~ 171 (312)
...|+|+.++|++++ |+++++|.+.+. .++..++||..+ |..+.| +|-|-|+|+++.|++
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~----------------s~~V~y~GH~~P--VwdV~F-~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTW----------------SCLVIYKGHLAP--VWDVQF-APRGYYFATASHDQT 516 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccc----------------eeEEEecCCCcc--eeeEEe-cCCceEEEecCCCce
Confidence 999999999999975 999999999988 788899999977 999999 899999999999999
Q ss_pred EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEe
Q 021453 172 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITL 250 (312)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~ 250 (312)
-++|.....++++.+.+|.+.|.|+.|||+..|++|||.|.++|+||..++. +..+.+|..++. ...+++.+++|+++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~-al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT-ALAFSPCGRYLASG 595 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceE-EEEEcCCCceEeec
Confidence 9999999999999999999999999999999999999999999999999886 466788888874 45589999999999
Q ss_pred cCCceEEEEEecccC---------cccee-EeecCCCccCCCCCCCeEEEeecCCCCC
Q 021453 251 TPDVIMHVLRLQRRQ---------TLAYR-ERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 251 ~~d~~i~i~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
+.|+.|++||+..+. ..++. .++.++.-++++..++.|.+||+..-..
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999999987632 22333 8899999999999999999999855433
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.2e-31 Score=225.88 Aligned_cols=236 Identities=18% Similarity=0.316 Sum_probs=199.2
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
|...|.++.|+|+| +.+++++.++.+++|+....+. .....+ .+|...|..++|+|++++++++ .
T Consensus 158 ~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~------------~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS------------NLLREL-SGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred ccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc------------hhhccc-cccccceeeeEECCCCcEEEEecC
Confidence 47789999999999 7899999999999999965541 011122 7899999999999999999997 5
Q ss_pred CCcEEEEEcC-CCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 108 DELVYLFEKN-MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|++|++||+. .+ ..++++.+|... |++++| +|.++.+++|+.|++|++||+++++++..+
T Consensus 224 D~tiriwd~~~~~----------------~~~~~l~gH~~~--v~~~~f-~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 224 DKTLRIWDLKDDG----------------RNLKTLKGHSTY--VTSVAF-SPDGNLLVSGSDDGTVRIWDVRTGECVRKL 284 (456)
T ss_pred CceEEEeeccCCC----------------eEEEEecCCCCc--eEEEEe-cCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence 9999999994 33 688999999976 999999 999999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC---CCCCCCChhh-hhhhhccCCCCceeEEecCCceEEEEEec
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+|.+.|++++|++++++|++++.|+.|++||+.++. ...+.++... .+....+++++.+++++..|+.+++|+++
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 9999999999999999999999999999999999988 3456656555 67888899999999999999999999987
Q ss_pred ccCcccee-------------EeecCCCccCCCCCCCeEEEeecCCCC
Q 021453 263 RRQTLAYR-------------ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 263 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
........ ...+.+..+.++..++.|++++.+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 54211111 224456667777888899999987654
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=198.24 Aligned_cols=223 Identities=15% Similarity=0.225 Sum_probs=183.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+.|||..+.+....+... ..-|..++|+|.+ +++|.|+-|....||++.+.+-.. . ...
T Consensus 79 lIvWDs~TtnK~haipl~-----------s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g------~---~~v 137 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLP-----------SSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG------N---VRV 137 (343)
T ss_pred EEEEEcccccceeEEecC-----------ceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc------c---cee
Confidence 357887665433333332 4469999999999 899999999999999998653110 0 022
Q ss_pred cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-C
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-N 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~ 159 (312)
...+.+|.+.+.+..|-+++++|.++.|.+..+||++++ +.++.|.+|... |.++++ +| +
T Consensus 138 ~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g----------------~~~~~f~GH~gD--V~slsl-~p~~ 198 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG----------------QQTQVFHGHTGD--VMSLSL-SPSD 198 (343)
T ss_pred eeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc----------------eEEEEecCCccc--EEEEec-CCCC
Confidence 333489999999999999888777778999999999999 899999999987 999999 88 9
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChh--hhhh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE--KIMK 236 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~--~~~~ 236 (312)
++.+++|+-|+..++||++.+.+++.|.+|...|++|.|.|+|.-|++|+.|++.|+||++... +..+. +.. ..+.
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~git 277 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-HDSIICGIT 277 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-cCcccCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999865 33332 222 2245
Q ss_pred hhccCCCCceeEEecCCceEEEEEeccc
Q 021453 237 ANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 237 ~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
...++..+++|+++..|..+.+||.-..
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeecccc
Confidence 5568889999999999999999995433
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.2e-31 Score=212.30 Aligned_cols=214 Identities=17% Similarity=0.260 Sum_probs=183.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d 108 (312)
...|++++|+.+| .+||+|+.||.+++|+..... ... +..|.++|.++.|+..|.+|++++ |
T Consensus 235 nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G~l---------------~~t-l~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 235 NKDVTSLDWNNDG-TLLATGSEDGEARIWNKDGNL---------------IST-LGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred cCCcceEEecCCC-CeEEEeecCcEEEEEecCchh---------------hhh-hhccCCceEEEEEcCCCCEEEeccCC
Confidence 4679999999999 899999999999999987543 111 278999999999999999999975 9
Q ss_pred CcEEEEEcCCCc-------------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021453 109 ELVYLFEKNMGL-------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 163 (312)
Q Consensus 109 ~~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l 163 (312)
+++.+||..++. ...+..+.+..+..-.+..++.+|.+. |.++.| +|.+.+|
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~--V~alk~-n~tg~LL 374 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE--VNALKW-NPTGSLL 374 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc--eEEEEE-CCCCceE
Confidence 999999997654 112233444445556788999999977 999999 9999999
Q ss_pred EEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC---------CeEEEEeCCCcEEEccCCCCC-CCCCCCChhh
Q 021453 164 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI---------PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK 233 (312)
Q Consensus 164 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~---------~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~ 233 (312)
++++.|++++||++........+.+|...|+.+.|+|+| ..+++++.|++|++||+..+. +..+..|..+
T Consensus 375 aS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p 454 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP 454 (524)
T ss_pred EEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc
Confidence 999999999999999898999999999999999999976 358999999999999998876 5778789999
Q ss_pred hhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 234 IMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
++... ++++++++++|+.|+.+.+|+.+..
T Consensus 455 Vysva-fS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 455 VYSVA-FSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred eEEEE-ecCCCcEEEecCCCCeeEeccccch
Confidence 86655 8999999999999999999998765
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=6.8e-32 Score=213.25 Aligned_cols=229 Identities=17% Similarity=0.297 Sum_probs=190.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d 108 (312)
+.+|..+.|.|+| +.|++|+..|.+.+|+..+. ....++..|..+|.++.|+++|.+++++. +
T Consensus 96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~f---------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g 159 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSF---------------NFETILQAHDSPVRTMKWSHNGTWMISGDKG 159 (464)
T ss_pred ccceeeEEEcCCC-ceeEeecccccEEEecCcee---------------eHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence 5689999999999 89999999999999998543 44556689999999999999999999985 9
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
|.|++|+.... .++.+..|.. ..|++++| +|+...++++++||+|+|||..-.+....+.+
T Consensus 160 G~iKyWqpnmn-----------------nVk~~~ahh~-eaIRdlaf-SpnDskF~t~SdDg~ikiWdf~~~kee~vL~G 220 (464)
T KOG0284|consen 160 GMIKYWQPNMN-----------------NVKIIQAHHA-EAIRDLAF-SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG 220 (464)
T ss_pred ceEEecccchh-----------------hhHHhhHhhh-hhhheecc-CCCCceeEEecCCCeEEEEeccCCchhheecc
Confidence 99999998764 5666666653 23999999 89999999999999999999998888889999
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021453 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 189 ~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
|.-.|.+++|||....++++|.|..|++||.+++. +.++..|...++... +.+++++|++++.|..++++|++....+
T Consensus 221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~-f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK-FNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE-EcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 99999999999999999999999999999999886 688888888886654 7788899999999999999999832111
Q ss_pred ---------cee-Eeec-CCCccCCCCCCCeEEEeecC
Q 021453 268 ---------AYR-ERRY-NAADFESDEEEGETYLLGFS 294 (312)
Q Consensus 268 ---------~~~-~~~~-~~~~~~~~~~~~~v~~~~~~ 294 (312)
+.. .+.| ...-+.++..++.|+.+.+.
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 111 2233 33445556677778777764
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=6.7e-31 Score=200.05 Aligned_cols=235 Identities=17% Similarity=0.225 Sum_probs=196.3
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
.+||++.|+.+.|+|+| .+||+|+.|..|.+|+..... .....+++|+++|..+.|.+++..+++
T Consensus 43 l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdc--------------eN~~~lkgHsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDC--------------ENFWVLKGHSGAVMELHGMRDGSHILS 107 (338)
T ss_pred cCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccc--------------cceeeeccccceeEeeeeccCCCEEEE
Confidence 37999999999999988 899999999999999976443 233344799999999999999998888
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ .|.+|+.||.+++ +..+.+++|..- |..+.-.....+++.+++.|+++++||+++..+++
T Consensus 108 ~gtDk~v~~wD~~tG----------------~~~rk~k~h~~~--vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETG----------------KRIRKHKGHTSF--VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred ecCCceEEEEecccc----------------eeeehhccccce--eeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence 6 6999999999999 889999999865 77775422234567789999999999999998888
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
++. .+-.++++.|..++..+.+|+-|+.|++||++.+. ...+.+|...+... ..++++.++.+-+.|.++++||++.
T Consensus 170 t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~l-sls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 170 TFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGL-SLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred ccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeE-EeccCCCccccccccceEEEEEecc
Confidence 775 34578999999999999999999999999998887 47788888888554 4788999999999999999999875
Q ss_pred cC------------------ccceeEeecCCCccCCCCCCCeEEEeecCC
Q 021453 264 RQ------------------TLAYRERRYNAADFESDEEEGETYLLGFSD 295 (312)
Q Consensus 264 ~~------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 295 (312)
.. .+....++|+...+..+..+..+|+||...
T Consensus 248 ~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 248 FAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred cCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 32 122236788888888888888899998754
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=2e-31 Score=207.49 Aligned_cols=237 Identities=17% Similarity=0.280 Sum_probs=194.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||.+-|.|+++.|-+ ..|++|+.|++++|||+.++++. ..+.+|...|..+++++-..|++++
T Consensus 148 ~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~Lk---------------ltltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLK---------------LTLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEE---------------EeecchhheeeeeeecccCceEEEe
Confidence 4899999999999987 89999999999999999999742 2237899999999999998899986
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.|++|+.||++.+ +.++.+.||... |.+++. .|.-..|++|+.|.++++||+++...+..
T Consensus 212 gedk~VKCwDLe~n----------------kvIR~YhGHlS~--V~~L~l-hPTldvl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYN----------------KVIRHYHGHLSG--VYCLDL-HPTLDVLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred cCCCeeEEEechhh----------------hhHHHhccccce--eEEEec-cccceeEEecCCcceEEEeeecccceEEE
Confidence 6999999999988 899999999977 999998 89999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+.+|..+|..+.+.|....+++|+.|++|++||++.++- .++..|...+ .....++....++++++|. ++-|++..+
T Consensus 273 l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv-ral~lhP~e~~fASas~dn-ik~w~~p~g 350 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV-RALCLHPKENLFASASPDN-IKQWKLPEG 350 (460)
T ss_pred ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccccee-eEEecCCchhhhhccCCcc-ceeccCCcc
Confidence 999999999999999999999999999999999998874 5555454444 4555667666777777765 677877654
Q ss_pred Cccce---------eEeecCCCccCCCCCCCeEEEeecCCCCCCC
Q 021453 265 QTLAY---------RERRYNAADFESDEEEGETYLLGFSDSDASS 300 (312)
Q Consensus 265 ~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 300 (312)
.-+.. .-.......+.++.|.|.+.++|..++-.-.
T Consensus 351 ~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 351 EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccc
Confidence 32211 1122233445567788888888888775443
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=1.3e-31 Score=211.58 Aligned_cols=230 Identities=12% Similarity=0.191 Sum_probs=190.7
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|..+|+++.|++++ ..+++|..+|.|++|+..-.. ++.+...|...|++++|+|+...++++
T Consensus 136 aHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnn---------------Vk~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNN---------------VKIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred hhcccceeEEEccCC-CEEEEcCCCceEEecccchhh---------------hHHhhHhhhhhhheeccCCCCceeEEec
Confidence 488999999999999 899999999999999987442 223324566999999999988888886
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.||.|+|||.... +..+.+.+|.-. |.+++| +|...++++|+.|..|++||.+++.++.++
T Consensus 200 dDg~ikiWdf~~~----------------kee~vL~GHgwd--VksvdW-HP~kgLiasgskDnlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 200 DDGTIKIWDFRMP----------------KEERVLRGHGWD--VKSVDW-HPTKGLIASGSKDNLVKLWDPRSGSCLATL 260 (464)
T ss_pred CCCeEEEEeccCC----------------chhheeccCCCC--cceecc-CCccceeEEccCCceeEeecCCCcchhhhh
Confidence 5999999999887 677888999877 999999 899999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
.+|+..|..+.|.|++++|+|+|.|..++++|+++. ++..+.+|.+.+....|......++.+++.|+.+..|.+....
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence 999999999999999999999999999999999954 5788889999997777555588899999999999999876322
Q ss_pred cc----------cee-EeecCCCccCCCCCCCeEEEee
Q 021453 266 TL----------AYR-ERRYNAADFESDEEEGETYLLG 292 (312)
Q Consensus 266 ~~----------~~~-~~~~~~~~~~~~~~~~~v~~~~ 292 (312)
.+ +|. .+-|-+--+.++..+..+.++.
T Consensus 341 p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 341 PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 21 222 3344444455555555555554
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=2.4e-30 Score=218.85 Aligned_cols=201 Identities=17% Similarity=0.332 Sum_probs=171.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-||..++++++++|+| +++|||+.||+|+|||..++- |..++ ..|...|+.+.|+..|+.++++
T Consensus 347 QgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~Sgf--------------C~vTF-teHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGF--------------CFVTF-TEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred cccccceeeEEECCCC-cEEEeccCCCcEEEEeccCce--------------EEEEe-ccCCCceEEEEEEecCCEEEEe
Confidence 3689999999999999 899999999999999999886 55555 8899999999999999988886
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc-eEEEEeccCCeeEE
Q 021453 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVR 184 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg-~v~iwd~~~~~~~~ 184 (312)
+ ||+|+.||+... +.-++|..... ....+++. +|.|..+.+|+.|. .|++|++++|+.+-
T Consensus 411 SLDGtVRAwDlkRY----------------rNfRTft~P~p-~Qfscvav-D~sGelV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRY----------------RNFRTFTSPEP-IQFSCVAV-DPSGELVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred ecCCeEEeeeeccc----------------ceeeeecCCCc-eeeeEEEE-cCCCCEEEeeccceEEEEEEEeecCeeee
Confidence 5 999999999877 66677765432 23678887 89999999998877 59999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC--CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+.+|.++|.+++|+|.+..|+++|.|++||+||+-.. ...++. ....++. ..+.|++..++..+-||.|.+||+.
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~-vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLA-VSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeE-EEEcCCCCeEEEEEecceEEEEEhh
Confidence 99999999999999999999999999999999998765 445554 3333433 4478899999999999999999975
Q ss_pred c
Q 021453 263 R 263 (312)
Q Consensus 263 ~ 263 (312)
.
T Consensus 551 ~ 551 (893)
T KOG0291|consen 551 E 551 (893)
T ss_pred h
Confidence 4
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.2e-30 Score=220.75 Aligned_cols=206 Identities=18% Similarity=0.358 Sum_probs=176.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
.+|...|++++|+|++ .++++++.|++|+|||+... . +.+.+ .+|...|++++|+|+++++++
T Consensus 200 ~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~--------------~~~~l-~gH~~~v~~~~f~p~g~~i~S 263 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR--------------NLKTL-KGHSTYVTSVAFSPDGNLLVS 263 (456)
T ss_pred cccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe--------------EEEEe-cCCCCceEEEEecCCCCEEEE
Confidence 4699999999999999 79999999999999999433 3 33333 799999999999999999999
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe--e
Q 021453 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--L 182 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~ 182 (312)
+ .|++|++||++++ ++.+.+.+|... |++++| ++++++|++++.|+.|++||+.+++ +
T Consensus 264 gs~D~tvriWd~~~~----------------~~~~~l~~hs~~--is~~~f-~~d~~~l~s~s~d~~i~vwd~~~~~~~~ 324 (456)
T KOG0266|consen 264 GSDDGTVRIWDVRTG----------------ECVRKLKGHSDG--ISGLAF-SPDGNLLVSASYDGTIRVWDLETGSKLC 324 (456)
T ss_pred ecCCCcEEEEeccCC----------------eEEEeeeccCCc--eEEEEE-CCCCCEEEEcCCCccEEEEECCCCceee
Confidence 7 5999999999998 899999999977 999999 9999999999999999999999998 5
Q ss_pred EEEeecCccc--eEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhh--hhhhccCCCCceeEEecCCceEE
Q 021453 183 VRLMVGDRHV--VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI--MKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 183 ~~~~~~~~~~--v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
+..+..+... ++.++|+|++.++++++.|+++++||+.... ...+.+|.... +........+.++++++.|+.++
T Consensus 325 ~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 325 LKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVY 404 (456)
T ss_pred eecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEE
Confidence 6777766544 9999999999999999999999999999775 45555565542 22222345789999999999999
Q ss_pred EEEecccCcc
Q 021453 258 VLRLQRRQTL 267 (312)
Q Consensus 258 i~~~~~~~~~ 267 (312)
+|++.+....
T Consensus 405 ~~~~~s~~~~ 414 (456)
T KOG0266|consen 405 VWDSSSGGIL 414 (456)
T ss_pred EEeCCccchh
Confidence 9998875444
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=188.31 Aligned_cols=252 Identities=15% Similarity=0.270 Sum_probs=205.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
||+|...++.+...++-. .+.|+.+...|++ ..||+++. ..||+||+++.. +.|+.+|
T Consensus 22 IRfWqa~tG~C~rTiqh~-----------dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~n-------p~Pv~t~-- 79 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHP-----------DSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNN-------PNPVATF-- 79 (311)
T ss_pred eeeeehhcCeEEEEEecC-----------ccceeeEEEcCCc-chhhhccC-CeeEEEEccCCC-------CCceeEE--
Confidence 689999999887777653 3459999999998 67777764 789999999887 3456555
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
.+|...|+++.|.-+|+.++++ .||+++|||++.. .+.+.++ +..+ |+++.. +|+
T Consensus 80 ----e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~----------------~~qR~~~-~~sp--Vn~vvl-hpn 135 (311)
T KOG0315|consen 80 ----EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL----------------SCQRNYQ-HNSP--VNTVVL-HPN 135 (311)
T ss_pred ----eccCCceEEEEEeecCeEEEecCCCceEEEEeccCc----------------ccchhcc-CCCC--cceEEe-cCC
Confidence 8899999999999999999997 5999999999885 4545554 5544 999998 899
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-------CCCCCCCh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------FPPLPDNA 231 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-------~~~~~~~~ 231 (312)
...|++|..+|.|++||+....+...+. ....+|.++...|+|.+++.+..-|..++|++-+.. +..++.|.
T Consensus 136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN 215 (311)
T ss_pred cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence 9999999999999999999876666553 345689999999999999999999999999976532 24456677
Q ss_pred hhhhhhhccCCCCceeEEecCCceEEEEEeccc----------Ccccee-EeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021453 232 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR----------QTLAYR-ERRYNAADFESDEEEGETYLLGFSDSDAS 299 (312)
Q Consensus 232 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 299 (312)
..++.+. .+++..+|++.++|.+++||+.... +...|- .++.++.++...+.+..+-.|+.+.+.+.
T Consensus 216 ~~il~C~-lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 216 GHILRCL-LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceEEEEE-ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 7776665 7899999999999999999987654 223443 78889999999988889999998877643
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-30 Score=214.29 Aligned_cols=218 Identities=16% Similarity=0.181 Sum_probs=190.0
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.+||..+....+.+.+. ..||.+..|-+.. +.+++|+.|..|++|+..+++ .+
T Consensus 37 V~IWnyetqtmVksfeV~-----------~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~e--------------kV 90 (794)
T KOG0276|consen 37 VQIWNYETQTMVKSFEVS-----------EVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGE--------------KV 90 (794)
T ss_pred eEEEecccceeeeeeeec-----------ccchhhheeeecc-ceEEEecCCceEEEEecccce--------------ee
Confidence 578998876656666654 3469999999987 899999999999999999987 33
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ ..|.+-|.+++.+|...++.++ .|-.|++||-+++. .+.++|.||..- |.+++|.+.+
T Consensus 91 ~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w---------------a~~qtfeGH~Hy--VMqv~fnPkD 152 (794)
T KOG0276|consen 91 KTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW---------------ACEQTFEGHEHY--VMQVAFNPKD 152 (794)
T ss_pred EEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCce---------------eeeeEEcCcceE--EEEEEecCCC
Confidence 333 8999999999999999988887 58899999998863 788999999966 9999995557
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC--CeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI--PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMK 236 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~ 236 (312)
.+.+++++.|++|++|.+.+..+..++++|...|+++.+-+.| ++|++|+.|.+|+|||.++.. +.++.+|...+ .
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv-s 231 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV-S 231 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc-e
Confidence 8899999999999999999999999999999999999998755 689999999999999999876 58888898887 6
Q ss_pred hhccCCCCceeEEecCCceEEEEEecc
Q 021453 237 ANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 237 ~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.+.++++-.++++|+.||++|+|+..+
T Consensus 232 ~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 232 FVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred EEEecCCCcEEEEecCCccEEEecCcc
Confidence 667888889999999999999998654
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-30 Score=200.17 Aligned_cols=199 Identities=14% Similarity=0.209 Sum_probs=174.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||...|.+++|-|.| ..+++++.|.+|+.|++.++. |...+ .+|.+.|..++.+.||.+++++
T Consensus 190 ~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~--------------cv~t~-~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY--------------CVKTF-PGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred cCcccceeeEEEEecC-CeeeecccccceeEEecccce--------------eEEec-cCchHhEEEEEecCCeeEEEec
Confidence 3688999999999999 899999999999999999997 55555 8899999999999999999997
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---------------CCEEEEeccCc
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---------------DEYVMSGSDCG 170 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---------------~~~l~~~~~dg 170 (312)
.|.+|++|-+.++ .+...++.|..+ |.+++| .|. ++++.+++.|+
T Consensus 254 s~dqtl~vW~~~t~----------------~~k~~lR~hEh~--vEci~w-ap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 254 SNDQTLRVWVVATK----------------QCKAELREHEHP--VECIAW-APESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred CCCceEEEEEeccc----------------hhhhhhhccccc--eEEEEe-cccccCcchhhccCCCCCccEEEeecccc
Confidence 4999999999887 678888999877 999998 442 36999999999
Q ss_pred eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEE
Q 021453 171 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
+|++||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||++++.. .++..|..-+ ....++.+..++++
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv-t~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV-TSLDFHKTAPYVVT 393 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee-EEEecCCCCceEEe
Confidence 999999999999999999999999999999999999999999999999998864 5565454444 44456677779999
Q ss_pred ecCCceEEEEEe
Q 021453 250 LTPDVIMHVLRL 261 (312)
Q Consensus 250 ~~~d~~i~i~~~ 261 (312)
|+-|..+++|..
T Consensus 394 GsVdqt~KvwEc 405 (406)
T KOG0295|consen 394 GSVDQTVKVWEC 405 (406)
T ss_pred ccccceeeeeec
Confidence 999999999963
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=8.8e-30 Score=214.86 Aligned_cols=243 Identities=15% Similarity=0.227 Sum_probs=192.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
+||...|.++....+| .+|++|+.|.++++|.+..... ...+... ..+|...|.+++++..+. +|++
T Consensus 362 ~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~----------~~~~~a~-~~gH~~svgava~~~~~asffvs 429 (775)
T KOG0319|consen 362 PGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS----------KSLCVAQ-ANGHTNSVGAVAGSKLGASFFVS 429 (775)
T ss_pred eCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc----------hhhhhhh-hcccccccceeeecccCccEEEE
Confidence 6899999999965666 7999999999999999954431 1112222 278999999999988774 8888
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ .|.++++|++...+.... ........+...|... |+++++ +|+.+++++|+.|.+.+||++.......
T Consensus 430 vS~D~tlK~W~l~~s~~~~~-------~~~~~~~~t~~aHdKd--IN~Vai-a~ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAF-------PIVLTCRYTERAHDKD--INCVAI-APNDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ecCCceEEEecCCCcccccc-------cceehhhHHHHhhccc--ccceEe-cCCCceEEecccccceeeecccCceEEE
Confidence 6 699999999976311100 0000122233456644 999999 9999999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.+.+|+..|.+|.|+|..+.++|+|.|++|+||.+.+.. +.++.+|...++... +-.++..++++++||.+++|++++
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~-F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS-FIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee-eeeCCcEEEeccCCCcEEEEeccc
Confidence 999999999999999999999999999999999999987 588999999997665 667889999999999999999876
Q ss_pred cC---------cccee-EeecCCCccCCCCCCCeEEEee
Q 021453 264 RQ---------TLAYR-ERRYNAADFESDEEEGETYLLG 292 (312)
Q Consensus 264 ~~---------~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 292 (312)
.. ..+|. ...+....+.++..++++.+|.
T Consensus 579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 579 NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 42 33444 4455556667777777787774
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.2e-29 Score=204.01 Aligned_cols=213 Identities=13% Similarity=0.182 Sum_probs=174.9
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCC---------------------Ccc-----cccccc
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT---------------------PVD-----TFCPRH 82 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------------~~~-----~~~~~~ 82 (312)
|++||.++.|+..| .+|++++.|+++.+||..++.+........ .+. .-.+..
T Consensus 275 HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~ 353 (524)
T KOG0273|consen 275 HKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK 353 (524)
T ss_pred cCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcce
Confidence 89999999999999 899999999999999998776543221100 000 001222
Q ss_pred cccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-
Q 021453 83 LIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND- 160 (312)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~- 160 (312)
.+.+|.+.|.++.|+|.|.+|+++ .|++++||+.... .....+.+|... |..+.| +|.+
T Consensus 354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----------------~~~~~l~~Hske--i~t~~w-sp~g~ 414 (524)
T KOG0273|consen 354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----------------NSVHDLQAHSKE--IYTIKW-SPTGP 414 (524)
T ss_pred eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC----------------cchhhhhhhccc--eeeEee-cCCCC
Confidence 236799999999999999999997 5999999998776 677788888865 889988 7764
Q ss_pred --------CEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChh
Q 021453 161 --------EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE 232 (312)
Q Consensus 161 --------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 232 (312)
-.+++++.|++|++||+..+.++..|..|..+|++++|+|+|+++|+|+.||.|.+|+.+++++..-.....
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 478999999999999999999999999999999999999999999999999999999999998743333344
Q ss_pred hhhhhhccCCCCceeEEecCCceEEEEEec
Q 021453 233 KIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+ -..+|..++..+...-.|+.+.+.|++
T Consensus 495 ~I-fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 495 GI-FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eE-EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 44 445577888999999999999999875
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.1e-30 Score=215.42 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=181.8
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
||...|.+++++..+..+|++++.|+++++|++...+. ...++ .+........|...|.+++.+|+.+++|+++
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~-----~~~~~-~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE-----TAFPI-VLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCccc-----ccccc-eehhhHHHHhhcccccceEecCCCceEEecc
Confidence 69999999999998889999999999999999986331 11111 1122223367999999999999999999985
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|++.+||+++.. ....++.||+.. |.+|.| ++..+.+++++.|++|+||.+.+..+++++
T Consensus 483 qDktaKiW~le~~----------------~l~~vLsGH~RG--vw~V~F-s~~dq~laT~SgD~TvKIW~is~fSClkT~ 543 (775)
T KOG0319|consen 483 QDKTAKIWDLEQL----------------RLLGVLSGHTRG--VWCVSF-SKNDQLLATCSGDKTVKIWSISTFSCLKTF 543 (775)
T ss_pred cccceeeecccCc----------------eEEEEeeCCccc--eEEEEe-ccccceeEeccCCceEEEEEeccceeeeee
Confidence 999999999976 788999999977 999999 999999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.+|+..|..+.|-.++..|++++.||.|++|++.+.+ ..++.+|.+.+..+. .++....+++++.|+.+.+|.
T Consensus 544 eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~-~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 544 EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS-VSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe-ecCccceeEecCCCeEEEEee
Confidence 9999999999999999999999999999999999886 588889999997766 455566899999999999995
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=3.3e-30 Score=207.79 Aligned_cols=241 Identities=12% Similarity=0.196 Sum_probs=196.1
Q ss_pred CcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021453 24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 24 ~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
..|+||+..|+++.|.|....+|++++.|+.|+||++.... . |...+ .+|..+|.+++|+.+|..+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--------~-----~lrtf-~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--------R-----CLRTF-KGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------c-----eehhh-hcchhhhhhhhccccCCee
Confidence 34579999999999999433899999999999999998632 1 23333 8999999999999999977
Q ss_pred EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCe
Q 021453 104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~ 181 (312)
.+++ |+.|++||++++ ++...|... ..+.++.| .|++ +.+++|+.|+.|+.||+++++
T Consensus 274 LS~sfD~~lKlwDtETG----------------~~~~~f~~~---~~~~cvkf-~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETG----------------QVLSRFHLD---KVPTCVKF-HPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred eeeecceeeeeeccccc----------------eEEEEEecC---CCceeeec-CCCCCcEEEEecCCCcEEEEeccchH
Confidence 7764 999999999998 677777643 33799999 7877 889999999999999999999
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCC-CChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 182 ~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.++.+..|-+.|..+.|-|+++.+++.+.|++++||+.+..-...+. ......+.+...++.+.++++-+.|+.+.++.
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 99999999999999999999999999999999999998877543222 22222334455678888999999999999887
Q ss_pred eccc------------Ccc---ceeEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021453 261 LQRR------------QTL---AYRERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 261 ~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
+... ... ....++|++..+.+++.+|.+++||+..--.
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence 5331 111 2238899999999999999999999865443
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.4e-28 Score=182.92 Aligned_cols=198 Identities=15% Similarity=0.233 Sum_probs=166.0
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
+|+..|.+++|+|.| ++|++|+.|.++.||.-..++ |.....+.+|...|.+++|+++|.+||++
T Consensus 59 ~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~e-------------fecv~~lEGHEnEVK~Vaws~sG~~LATCS 124 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGE-------------FECVATLEGHENEVKCVAWSASGNYLATCS 124 (312)
T ss_pred cchheeeeeeecCCC-cEEEEeeccceEEEeecCCCc-------------eeEEeeeeccccceeEEEEcCCCCEEEEee
Confidence 589999999999999 799999999999999977654 23334448999999999999999999997
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc---CCeeE
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GGKLV 183 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---~~~~~ 183 (312)
.|+.|.||.+... ....+...++.|... |..+.| +|...+|++++.|.+|++|.-. .-+++
T Consensus 125 RDKSVWiWe~ded-------------dEfec~aVL~~HtqD--VK~V~W-HPt~dlL~S~SYDnTIk~~~~~~dddW~c~ 188 (312)
T KOG0645|consen 125 RDKSVWIWEIDED-------------DEFECIAVLQEHTQD--VKHVIW-HPTEDLLFSCSYDNTIKVYRDEDDDDWECV 188 (312)
T ss_pred CCCeEEEEEecCC-------------CcEEEEeeecccccc--ccEEEE-cCCcceeEEeccCCeEEEEeecCCCCeeEE
Confidence 5999999998743 122677888999987 999999 8999999999999999999865 34788
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC-ChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021453 184 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 184 ~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.++.+|...|.+++|+|.|..|++++.|++++||...+. ++. |...++... |. ...+++++.|+.++++.-.
T Consensus 189 ~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~-W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 189 QTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVP-WD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred EEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeee-ec--ccceEeccCCCEEEEEEec
Confidence 999999999999999999999999999999999986632 222 334444444 44 5689999999999999744
No 30
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.9e-28 Score=209.87 Aligned_cols=212 Identities=10% Similarity=0.127 Sum_probs=164.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s 105 (312)
.||.+.|++++|+|.++++|++|+.|++|++||+.+...... .. .+...+.+|...|.+++|+|++ .+|++
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--~~------~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--IS------DPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--cC------cceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 479999999999994337999999999999999986532110 00 1122237899999999999986 58888
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ .|+.|++||+.++ +....+.+|... |.+++| +|++.+|++++.|+.|++||+++++.+.
T Consensus 144 gs~DgtVrIWDl~tg----------------~~~~~l~~h~~~--V~sla~-spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 144 AGADMVVNVWDVERG----------------KAVEVIKCHSDQ--ITSLEW-NLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred EeCCCEEEEEECCCC----------------eEEEEEcCCCCc--eEEEEE-ECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 6 5999999999887 677778888866 999999 8999999999999999999999999999
Q ss_pred EeecCccc-eEEEEEcCCCCeEEEEe----CCCcEEEccCCCCC-C-CCCCCChhhhhhhhccCCCCceeEEec-CCceE
Q 021453 185 LMVGDRHV-VNQLEPHPHIPMFATCG----IEKTVKLWAPMPTD-F-PPLPDNAEKIMKANKQGREDHSRITLT-PDVIM 256 (312)
Q Consensus 185 ~~~~~~~~-v~~v~~~p~~~~l~t~~----~d~~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i 256 (312)
.+.+|.+. +..+.|.|++..+++++ .|+.|++||++... . .....+.........+.+++.++++++ .|+.|
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 99888764 45678999988877665 47999999998653 2 111112222223334667778888777 59999
Q ss_pred EEEEecccC
Q 021453 257 HVLRLQRRQ 265 (312)
Q Consensus 257 ~i~~~~~~~ 265 (312)
++|++....
T Consensus 285 riwdl~~~~ 293 (493)
T PTZ00421 285 RCFELMNER 293 (493)
T ss_pred EEEEeeCCc
Confidence 999998764
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.7e-29 Score=213.95 Aligned_cols=220 Identities=17% Similarity=0.296 Sum_probs=185.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++||.|=+... .++.+|.++|..+.|||+. -+|++|+.|.+|++|+..+.+ |.
T Consensus 33 IQlWDYRM~tli-----------~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rr--------------cl 86 (1202)
T KOG0292|consen 33 IQLWDYRMGTLI-----------DRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRR--------------CL 86 (1202)
T ss_pred eeeehhhhhhHH-----------hhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccce--------------eh
Confidence 567777643221 1234599999999999998 599999999999999999988 55
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ .+|-+-|..+.|++.-..++++ .|.+|+||+-.+. +++..++||..- |.|..| +|.
T Consensus 87 ftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr----------------~~iavltGHnHY--VMcAqF-hpt 146 (1202)
T KOG0292|consen 87 FTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR----------------KCIAVLTGHNHY--VMCAQF-HPT 146 (1202)
T ss_pred hhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCC----------------ceEEEEecCceE--EEeecc-CCc
Confidence 555 8999999999999998888887 5999999999988 899999999976 999999 899
Q ss_pred CCEEEEeccCceEEEEeccC--------C---------------------eeEEEeecCccceEEEEEcCCCCeEEEEeC
Q 021453 160 DEYVMSGSDCGHLFIWKKKG--------G---------------------KLVRLMVGDRHVVNQLEPHPHIPMFATCGI 210 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~--------~---------------------~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~ 210 (312)
...+++++.|.+|+|||+.. + -....+.+|...|+-++|+|.-+.+++|+.
T Consensus 147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 99999999999999999641 1 012356789999999999999999999999
Q ss_pred CCcEEEccCCCCC---CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021453 211 EKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 211 d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
|+.|++|.....+ +.+..+|.+.+ ....+++..+++++.+.|+.+++||+..+...
T Consensus 227 DRqVKlWrmnetKaWEvDtcrgH~nnV-ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 227 DRQVKLWRMNETKAWEVDTCRGHYNNV-SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred cceeeEEEeccccceeehhhhcccCCc-ceEEecCccceeEecCCCccEEEEecccccce
Confidence 9999999987654 46777888888 45558888899999999999999998766443
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-29 Score=193.72 Aligned_cols=236 Identities=13% Similarity=0.204 Sum_probs=198.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||+.+|+.+-|+|.. .+.++++.|++|++||..+++ +...+ .+|...+..++|+..|++|+++
T Consensus 105 ~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~--------------~e~~L-rGHt~sv~di~~~a~Gk~l~tc 168 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGE--------------LERSL-RGHTDSVFDISFDASGKYLATC 168 (406)
T ss_pred hccccceeeeeeccCc-eEEEEecCCceEEEEEccchh--------------hhhhh-hccccceeEEEEecCccEEEec
Confidence 4799999999999988 688999999999999999998 33333 8999999999999999999997
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+ |-.+++||..+.. ++++.+.+|... |.+++| -|.|.++++++.|.+|+.|++.++.++.+
T Consensus 169 SsDl~~~LWd~~~~~---------------~c~ks~~gh~h~--vS~V~f-~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTFF---------------RCIKSLIGHEHG--VSSVFF-LPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred CCccchhheeHHHHH---------------HHHHHhcCcccc--eeeEEE-EecCCeeeecccccceeEEecccceeEEe
Confidence 4 7779999997632 678888899877 999999 68899999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCC---------------CCceeEE
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR---------------EDHSRIT 249 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~l~s 249 (312)
+.+|...|..+..+.||.++|+++.|.+|++|-+.+... ..+.+|...+ .+..|.+ .+.++.+
T Consensus 231 ~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v-Eci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV-ECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce-EEEEecccccCcchhhccCCCCCccEEEe
Confidence 999999999999999999999999999999999988742 3444444333 2222211 1358999
Q ss_pred ecCCceEEEEEecccCccc-------ee---EeecCCCccCCCCCCCeEEEeecCCCC
Q 021453 250 LTPDVIMHVLRLQRRQTLA-------YR---ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 250 ~~~d~~i~i~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
++.|++|++||+..+..+. |+ .+.|.+.++.+..|+..+-+||+....
T Consensus 310 ~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 9999999999998763321 11 678889999999999999999987764
No 33
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.2e-27 Score=207.22 Aligned_cols=211 Identities=10% Similarity=0.076 Sum_probs=156.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
.+|..+|.+++|+|+.+++|++|+.|++|++||+.++..... .+. .+...+.+|...|.+++|+|++. +|++
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----~i~--~p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----EIK--DPQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----ccc--cceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 579999999999997548999999999999999986431000 000 11122378999999999999987 4566
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ .|+.|++||++++ +....+. +... |.+++| +++|.+|++++.|+.|++||+++++.+.
T Consensus 144 gS~DgtIrIWDl~tg----------------~~~~~i~-~~~~--V~Slsw-spdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 144 SGFDSFVNIWDIENE----------------KRAFQIN-MPKK--LSSLKW-NIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred EeCCCeEEEEECCCC----------------cEEEEEe-cCCc--EEEEEE-CCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 5 5999999999886 4444444 3333 999999 9999999999999999999999999999
Q ss_pred EeecCccceEE-----EEEcCCCCeEEEEeCCC----cEEEccCCCC-CCCCCCCCh--hhhhhhhccCCCCceeEEecC
Q 021453 185 LMVGDRHVVNQ-----LEPHPHIPMFATCGIEK----TVKLWAPMPT-DFPPLPDNA--EKIMKANKQGREDHSRITLTP 252 (312)
Q Consensus 185 ~~~~~~~~v~~-----v~~~p~~~~l~t~~~d~----~i~iwd~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~ 252 (312)
.+.+|.+.+.. ..|++++.++++++.|+ +|+|||++.. .......+. ...+...+...++.++++|..
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 99999876533 23568999999988774 7999999853 322111111 122222223446778999999
Q ss_pred CceEEEEEeccc
Q 021453 253 DVIMHVLRLQRR 264 (312)
Q Consensus 253 d~~i~i~~~~~~ 264 (312)
|+.+++|++...
T Consensus 284 D~tIr~~e~~~~ 295 (568)
T PTZ00420 284 DGNCRYYQHSLG 295 (568)
T ss_pred CCeEEEEEccCC
Confidence 999999998654
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.4e-27 Score=187.31 Aligned_cols=251 Identities=12% Similarity=0.178 Sum_probs=192.7
Q ss_pred CCccceEEEEEcCCCC--cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 28 MNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
||.++|.+++|.-.++ ..|++++.|.++++|.++.++.... +... ..+|...|.++...++|..+++
T Consensus 142 Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~----------~~~~-~~GHk~~V~sVsv~~sgtr~~S 210 (423)
T KOG0313|consen 142 GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK----------ALKV-CRGHKRSVDSVSVDSSGTRFCS 210 (423)
T ss_pred cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh----------HHhH-hcccccceeEEEecCCCCeEEe
Confidence 5899999888865432 3699999999999999987763211 1111 1499999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCc---------CCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEE
Q 021453 106 YN-DELVYLFEKNMGLGPSPLS---------LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 175 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iw 175 (312)
++ |..|.+|+..+......-. ..........++..+.||... |.++.| ++ ...+++++.|.+|+.|
T Consensus 211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~--Vs~V~w-~d-~~v~yS~SwDHTIk~W 286 (423)
T KOG0313|consen 211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP--VSSVVW-SD-ATVIYSVSWDHTIKVW 286 (423)
T ss_pred ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc--eeeEEE-cC-CCceEeecccceEEEE
Confidence 86 9999999944322111100 111112334567788999977 999999 55 7788999999999999
Q ss_pred eccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhhhccCC-CCceeEEe
Q 021453 176 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGR-EDHSRITL 250 (312)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~l~s~ 250 (312)
|+.++..+..+.+ ....+++..+|..++|++|+.|..|++||++++. ..++.+|.+.+-.+ .|++ +...++++
T Consensus 287 Dletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv-kwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 287 DLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV-KWSPTNEFQLVSG 364 (423)
T ss_pred Eeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe-ecCCCCceEEEEE
Confidence 9999999888874 4578999999999999999999999999999874 35677899977544 4555 67789999
Q ss_pred cCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEEeecCCCCCCCCCCCc
Q 021453 251 TPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGN 305 (312)
Q Consensus 251 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 305 (312)
+.|+++++||++....+ ..++..|+|. |+.+|..++.--..+|+|
T Consensus 365 S~D~t~klWDvRS~k~p--------lydI~~h~DK--vl~vdW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 365 SYDNTVKLWDVRSTKAP--------LYDIAGHNDK--VLSVDWNEGGLIVSGGAD 409 (423)
T ss_pred ecCCeEEEEEeccCCCc--------ceeeccCCce--EEEEeccCCceEEeccCc
Confidence 99999999999988655 3467777777 999998887544444433
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.6e-28 Score=178.41 Aligned_cols=232 Identities=16% Similarity=0.253 Sum_probs=183.6
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|.++|.++.|+-+| ++.++++.|.+|++|+...+.++ +.. .+|...|..++.+.+...++++
T Consensus 15 ~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~li--------------ktY-sghG~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALI--------------KTY-SGHGHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred ccccceEEEEEccCC-CEEEEcCCCceEEeeccccccee--------------eee-cCCCceeeeccccccccccccCC
Confidence 378899999999999 89999999999999999988743 333 8899999999999999888886
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC--CeeEE
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG--GKLVR 184 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~--~~~~~ 184 (312)
.|..+.+||+.++ +..+.+.+|... |..+.| +.+...+++|+.|..+++||.++ .++++
T Consensus 79 gDk~v~vwDV~TG----------------kv~Rr~rgH~aq--VNtV~f-NeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 79 GDKAVQVWDVNTG----------------KVDRRFRGHLAQ--VNTVRF-NEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred CCceEEEEEcccC----------------eeeeecccccce--eeEEEe-cCcceEEEeccccceeEEEEcccCCCCccc
Confidence 6999999999999 899999999977 999999 89999999999999999999765 56777
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+......|.++.. .+..+++|+.||++|.||++.+.+.. ......+.+..++++++..++++-|+++++.|-.++
T Consensus 140 ildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred hhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence 77766777877776 55678888888888888888876522 122333466667788888888888888888885443
Q ss_pred Ccc---------cee---EeecCCCccCCCCCCCeEEEeecCCCCC
Q 021453 265 QTL---------AYR---ERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 265 ~~~---------~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
..+ .|. ........+.++.++|.||+||+.++..
T Consensus 216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 221 121 2223345566778888888888877643
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=4.1e-28 Score=189.16 Aligned_cols=217 Identities=18% Similarity=0.283 Sum_probs=183.5
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++||+.+.+....+ +||...|..+++|+.. -++.+++.|+.|+.||++..+. .
T Consensus 175 ikIwDlatg~Lkltl-----------tGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkv--------------I 228 (460)
T KOG0285|consen 175 IKIWDLATGQLKLTL-----------TGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKV--------------I 228 (460)
T ss_pred eEEEEcccCeEEEee-----------cchhheeeeeeecccC-ceEEEecCCCeeEEEechhhhh--------------H
Confidence 589999987643333 2478899999999998 5999999999999999998763 2
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
... .+|-..|.+++.+|.-..|+++ .|..+++||+++. ..+..+.||... |.++.+ .|.
T Consensus 229 R~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr----------------~~V~~l~GH~~~--V~~V~~-~~~ 288 (460)
T KOG0285|consen 229 RHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR----------------ASVHVLSGHTNP--VASVMC-QPT 288 (460)
T ss_pred HHh-ccccceeEEEeccccceeEEecCCcceEEEeeeccc----------------ceEEEecCCCCc--ceeEEe-ecC
Confidence 222 7899999999999999999996 6999999999998 788999999977 999998 788
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~ 238 (312)
...+++|+.|++|++||++.|+....+..|...|.+++.+|....||+++.| .|+-|++..+. +..+.+|...+..+.
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS 367 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeee
Confidence 8889999999999999999999999999999999999999999999999876 69999988776 455665555443322
Q ss_pred ccCCCCceeEEecCCceEEEEEecccCc
Q 021453 239 KQGREDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
..++..+++|+.++.+..||.+.+.+
T Consensus 368 --~nsD~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 368 --VNSDGVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred --eccCceEEEcCCceEEEEEecCcCcc
Confidence 23567899999999999999876643
No 37
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.2e-28 Score=187.42 Aligned_cols=221 Identities=14% Similarity=0.237 Sum_probs=172.8
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC----HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
.|+.++.+.+|+|+| .++|+|+.|.+|+|.|++.- +....+..+..-+ -.+...+..|.+.|..+.|+|...+|
T Consensus 110 ~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~-hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQAR-HPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred ecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccC-CceEeehhhccCcccceeecchhheE
Confidence 589999999999999 89999999999999998721 1111111111111 01112227899999999999999999
Q ss_pred EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021453 104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
+++ .|++|++||.... ...+.++......+|.+++| +|.|.+|+.|.+...+++||+.+-++
T Consensus 188 iS~srD~tvKlFDfsK~----------------saKrA~K~~qd~~~vrsiSf-HPsGefllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKT----------------SAKRAFKVFQDTEPVRSISF-HPSGEFLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred EeccCCCeEEEEecccH----------------HHHHHHHHhhccceeeeEee-cCCCceEEEecCCCceeEEeccceeE
Confidence 997 5999999999754 23333333333345999999 89999999999999999999999888
Q ss_pred EEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCC-CChhhhhhhhccCCCCceeEEecCCceEE
Q 021453 183 VRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 183 ~~~~---~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
...- ..|++.|+++.+++.+++.+|++.||.|++||--+.+ +.++. .|....+..+.+..++.++++.+.|+.++
T Consensus 251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence 6544 3688999999999999999999999999999955544 44443 46666677777888999999999999999
Q ss_pred EEEecccCcc
Q 021453 258 VLRLQRRQTL 267 (312)
Q Consensus 258 i~~~~~~~~~ 267 (312)
+|.+.++..+
T Consensus 331 LWEi~t~R~l 340 (430)
T KOG0640|consen 331 LWEISTGRML 340 (430)
T ss_pred eeeecCCceE
Confidence 9999876443
No 38
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=190.06 Aligned_cols=243 Identities=14% Similarity=0.184 Sum_probs=190.7
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
|.+..+-|..|+|++ ++|++|+.||.|.+||..++++....+ +.....+..+..+|.++.|+.|.+++|+++
T Consensus 211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLk-------YQAqd~fMMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLK-------YQAQDNFMMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhh-------hhhhcceeecccceEEEeecccHHHhhccC
Confidence 456778999999999 899999999999999999998543211 111112245788999999999999999985
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
||.|++|.++++ .+++.|. .|... |+++.| +.++..+++++.|.++++.-+++|++++.
T Consensus 283 qDGkIKvWri~tG----------------~ClRrFdrAHtkG--vt~l~F-SrD~SqiLS~sfD~tvRiHGlKSGK~LKE 343 (508)
T KOG0275|consen 283 QDGKIKVWRIETG----------------QCLRRFDRAHTKG--VTCLSF-SRDNSQILSASFDQTVRIHGLKSGKCLKE 343 (508)
T ss_pred cCCcEEEEEEecc----------------hHHHHhhhhhccC--eeEEEE-ccCcchhhcccccceEEEeccccchhHHH
Confidence 999999999998 7888887 78766 999999 99999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCC--ChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
+++|..-|+.+.|.++|..+++++.||+|++|+..+.+ +.++.. ..-++......+.+...++.+...+++.+.+++
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 99999999999999999999999999999999998776 344432 223333333344466677778888888888765
Q ss_pred ccC----------cccee--EeecCCCccCCCCCCCeEEEeecCCCC
Q 021453 263 RRQ----------TLAYR--ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 263 ~~~----------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
..- ...++ ..+|.+.-+..-.+++.+|.+....|.
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 321 11122 445555555556677778887776654
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.3e-28 Score=200.42 Aligned_cols=180 Identities=17% Similarity=0.345 Sum_probs=155.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++|++.+.+....|.. |+..|.+++.||+.| ++++++.|-+|++||.+..= ..
T Consensus 79 IrVfnynt~ekV~~FeA-----------H~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~w--------------a~ 132 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTFEA-----------HSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEW--------------AC 132 (794)
T ss_pred EEEEecccceeeEEeec-----------cccceeeeeecCCCC-eEEecCCccEEEEeeccCce--------------ee
Confidence 46777776654444443 899999999999984 99999999999999998542 22
Q ss_pred cccccCCCccEEEEEEccCC-CeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec-
Q 021453 81 RHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG- 157 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~-~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s- 157 (312)
...+.+|..-|.+++|+|.. ..+|+++ |++|++|.+.+. .+..++++|... |.+++|++
T Consensus 133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~----------------~~nfTl~gHekG--VN~Vdyy~~ 194 (794)
T KOG0276|consen 133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP----------------HPNFTLEGHEKG--VNCVDYYTG 194 (794)
T ss_pred eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC----------------CCceeeeccccC--cceEEeccC
Confidence 33338999999999999976 4888875 999999999987 788999999977 99999953
Q ss_pred CCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 158 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
++..+|++|++|.+++|||..+.+|++++.+|...|+.+.|+|.-+++++|++||++|||+..+.++
T Consensus 195 gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 195 GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 2346999999999999999999999999999999999999999999999999999999999888765
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=7.4e-27 Score=215.66 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=161.1
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-c
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-N 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~ 107 (312)
...|.+++|+|....+|++++.||+|++||+.+++. ...+ .+|...|++++|+| ++.+|+++ .
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--------------~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL--------------VTEM-KEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--------------EEEe-cCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 457999999986547999999999999999988762 2222 78999999999997 67888887 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEEEe
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLM 186 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~ 186 (312)
|+.|++||+.++ .....+..+ .. +.++.|.++++.+|++|+.||.|++||+++.+ ++..+
T Consensus 597 Dg~v~iWd~~~~----------------~~~~~~~~~-~~--v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~ 657 (793)
T PLN00181 597 DGSVKLWSINQG----------------VSIGTIKTK-AN--ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM 657 (793)
T ss_pred CCEEEEEECCCC----------------cEEEEEecC-CC--eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe
Confidence 999999999876 566666544 33 88999856679999999999999999998765 56778
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-------CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-------DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL 259 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~ 259 (312)
.+|...|.++.|. ++.++++++.|++|++||+... .+..+.+|...+ ....+++++.++++++.|+.+++|
T Consensus 658 ~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i-~~v~~s~~~~~lasgs~D~~v~iw 735 (793)
T PLN00181 658 IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK-NFVGLSVSDGYIATGSETNEVFVY 735 (793)
T ss_pred cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe-eEEEEcCCCCEEEEEeCCCEEEEE
Confidence 8999999999997 6788999999999999998743 234555665544 344567788899999999999999
Q ss_pred Eecc
Q 021453 260 RLQR 263 (312)
Q Consensus 260 ~~~~ 263 (312)
+...
T Consensus 736 ~~~~ 739 (793)
T PLN00181 736 HKAF 739 (793)
T ss_pred ECCC
Confidence 9653
No 41
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=6.9e-29 Score=200.21 Aligned_cols=214 Identities=13% Similarity=0.184 Sum_probs=170.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|+||++.... .+++. |.||+.+|.+++|+++| ..|++++.|+.|++||+++|++...
T Consensus 239 vklW~vy~~~--~~lrt--------f~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~~~------------ 295 (503)
T KOG0282|consen 239 VKLWNVYDDR--RCLRT--------FKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVLSR------------ 295 (503)
T ss_pred EEEEEEecCc--ceehh--------hhcchhhhhhhhccccC-CeeeeeecceeeeeeccccceEEEE------------
Confidence 5788887632 22221 24699999999999999 8999999999999999999985322
Q ss_pred cccccCCCccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021453 81 RHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
+ .....++++.|+|++ +.+++ ++|+.|+.||++++ +.++.+..|... |..+.| -+
T Consensus 296 --f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----------------kvvqeYd~hLg~--i~~i~F-~~ 352 (503)
T KOG0282|consen 296 --F--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----------------KVVQEYDRHLGA--ILDITF-VD 352 (503)
T ss_pred --E--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----------------HHHHHHHhhhhh--eeeeEE-cc
Confidence 1 124567899999999 55555 47999999999998 788888888866 999999 79
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEE----------------------------------------------EeecCc--
Q 021453 159 NDEYVMSGSDCGHLFIWKKKGGKLVR----------------------------------------------LMVGDR-- 190 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~----------------------------------------------~~~~~~-- 190 (312)
+++++++.++|+.++||+.+.+-++. .+++|.
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 99999999999999999976543221 333454
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 191 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 191 ~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
+.-..+.|||+|.+|++|+.||.+.+||.++.++ ..+..|...++...|-..+...+++++-+|.|++|+
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 2335689999999999999999999999998875 667777666666664444888999999999999995
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=175.11 Aligned_cols=204 Identities=14% Similarity=0.165 Sum_probs=174.1
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
|+||...|..++.+.++ ..|++++.|..+.+||+.++++. ..+ .+|...|..++|+.+...+++
T Consensus 55 YsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv~--------------Rr~-rgH~aqVNtV~fNeesSVv~S 118 (307)
T KOG0316|consen 55 YSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKVD--------------RRF-RGHLAQVNTVRFNEESSVVAS 118 (307)
T ss_pred ecCCCceeeeccccccc-cccccCCCCceEEEEEcccCeee--------------eec-ccccceeeEEEecCcceEEEe
Confidence 35789999999999998 79999999999999999999832 222 899999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
++ |..+++||.++. ..++++.+...... |.++.. .+..+++|+.||+++.||++.|+...
T Consensus 119 gsfD~s~r~wDCRS~--------------s~ePiQildea~D~--V~Si~v---~~heIvaGS~DGtvRtydiR~G~l~s 179 (307)
T KOG0316|consen 119 GSFDSSVRLWDCRSR--------------SFEPIQILDEAKDG--VSSIDV---AEHEIVAGSVDGTVRTYDIRKGTLSS 179 (307)
T ss_pred ccccceeEEEEcccC--------------CCCccchhhhhcCc--eeEEEe---cccEEEeeccCCcEEEEEeecceeeh
Confidence 86 999999999875 22677888777766 999876 57889999999999999999998877
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEec
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+.+| +|++++|+++++..+.++.|++|++.|-.++++ ..+.+|.+..++..+.-. ....+++++.||.+.+||+-
T Consensus 180 Dy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 180 DYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred hhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 66644 799999999999999999999999999999985 778888887766654433 56788999999999999987
Q ss_pred ccCc
Q 021453 263 RRQT 266 (312)
Q Consensus 263 ~~~~ 266 (312)
....
T Consensus 258 d~~~ 261 (307)
T KOG0316|consen 258 DETQ 261 (307)
T ss_pred ccee
Confidence 6543
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2e-26 Score=188.13 Aligned_cols=217 Identities=20% Similarity=0.330 Sum_probs=175.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++||+.+.+....+. +|...+..+.|+|++ +.+++++.||.|++|++.+++. .
T Consensus 33 i~i~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~--------------~ 86 (289)
T cd00200 33 IKVWDLETGELLRTLK-----------GHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGEC--------------V 86 (289)
T ss_pred EEEEEeeCCCcEEEEe-----------cCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCcccc--------------e
Confidence 4677776554222222 267789999999998 7999999999999999987641 1
Q ss_pred cccccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ ..|...+.++.|++++++++++. ++.+++||+.+. +....+..|... +.+++| +|+
T Consensus 87 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~ 146 (289)
T cd00200 87 RTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----------------KCLTTLRGHTDW--VNSVAF-SPD 146 (289)
T ss_pred EEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----------------EEEEEeccCCCc--EEEEEE-cCc
Confidence 222 56777899999999988888886 999999999866 566677777755 999999 898
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 238 (312)
+.++++++.++.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.|++||++.... ..+..+...+ ...
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~~~ 225 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV-NSV 225 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCce-EEE
Confidence 99999988899999999999999989988988999999999999999999999999999987654 4444555544 334
Q ss_pred ccCCCCceeEEecCCceEEEEEeccc
Q 021453 239 KQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+.+++.++++++.++.+++|++...
T Consensus 226 ~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 226 AFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred EEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 46667788888888999999998754
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.9e-26 Score=213.00 Aligned_cols=236 Identities=12% Similarity=0.165 Sum_probs=181.8
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEEe
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~ 106 (312)
+|...|.+++|+|++ +++++|+.|++|++|++........ ....++ .. ..+...+.+++|++. +.+|+++
T Consensus 481 ~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~------~~-~~~~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 481 NSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGR-DIHYPV------VE-LASRSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCccccccc-ccccce------EE-ecccCceeeEEeccCCCCEEEEE
Confidence 388999999999998 8999999999999999864210000 000011 11 123457899999885 5688886
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCeeEE
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
.|+.|++||+.++ +.+..+.+|... |.+++| +| ++.+|++|+.|+.|++||+++++.+.
T Consensus 552 ~~Dg~v~lWd~~~~----------------~~~~~~~~H~~~--V~~l~~-~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 552 NFEGVVQVWDVARS----------------QLVTEMKEHEKR--VWSIDY-SSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred eCCCeEEEEECCCC----------------eEEEEecCCCCC--EEEEEE-cCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 5999999999877 677888889866 999999 65 78999999999999999999999888
Q ss_pred EeecCccceEEEEEc-CCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 185 LMVGDRHVVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~-p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.+..+ ..|.++.|+ +++.+|++|+.|+.|++||++... ...+.+|...+.... +. ++..+++++.|+.+++||+
T Consensus 613 ~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~-f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 613 TIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR-FV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE-Ee-CCCEEEEEECCCEEEEEeC
Confidence 88755 678999995 578899999999999999998764 345566776664443 33 5678999999999999998
Q ss_pred cccC-----cc-----------ceeEeecCCCccCCCCCCCeEEEeecC
Q 021453 262 QRRQ-----TL-----------AYRERRYNAADFESDEEEGETYLLGFS 294 (312)
Q Consensus 262 ~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~ 294 (312)
.... .. ....+.+.+..++++..++.+++|+..
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 6321 00 112466777888888889999999854
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-27 Score=177.51 Aligned_cols=202 Identities=14% Similarity=0.210 Sum_probs=165.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN- 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~- 107 (312)
...+..++|++...+.+++++.||++++||+.... .|+.. ++.|...|.++.|++-.+ .+++++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------~Pi~~------~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------KPIHK------FKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------cchhH------HHhhhhheEEeccccccceeEEeecc
Confidence 56899999999888999999999999999965433 24443 388999999999999664 555555
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
|++|++|+...+ +.++++.+|... |....|+...++.+++++.|+.+++||++..-....+.
T Consensus 126 D~TiKLW~~~r~----------------~Sv~Tf~gh~~~--Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ 187 (311)
T KOG0277|consen 126 DGTIKLWDPNRP----------------NSVQTFNGHNSC--IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE 187 (311)
T ss_pred CCceEeecCCCC----------------cceEeecCCccE--EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence 999999999877 788899999976 99999944468899999999999999988643334488
Q ss_pred cCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEecc
Q 021453 188 GDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 188 ~~~~~v~~v~~~p~~-~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.|...+.++.|+.-. ..++||+.|+.||.||++.-+ +..+.+|.-.+.+. ++++ ....|++++.|.++++||...
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkv-k~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKV-KFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEE-ecCcchhhHhhhccccceEEeccccc
Confidence 999999999998754 569999999999999999876 45666777777444 4555 677899999999999999764
Q ss_pred c
Q 021453 264 R 264 (312)
Q Consensus 264 ~ 264 (312)
.
T Consensus 267 ~ 267 (311)
T KOG0277|consen 267 Q 267 (311)
T ss_pred c
Confidence 4
No 46
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=184.99 Aligned_cols=219 Identities=18% Similarity=0.309 Sum_probs=176.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
..|...|.+++.+|+. ++++||+.|....+|++.++.. ...+ .+|+..|+++.|+.+|.+||++
T Consensus 61 ~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~--------------~~el-tgHKDSVt~~~FshdgtlLATG 124 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEF--------------AGEL-TGHKDSVTCCSFSHDGTLLATG 124 (399)
T ss_pred hhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcc--------------eeEe-cCCCCceEEEEEccCceEEEec
Confidence 3599999999999977 8999999999999999999862 2222 7899999999999999999998
Q ss_pred c-CCcEEEEEcCCCc--------------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 107 N-DELVYLFEKNMGL--------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
. +|.|+||...++. +..+.++=.|.+......+.+.||..+ +++=.| .|+
T Consensus 125 dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f-~pd 201 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEF-IPD 201 (399)
T ss_pred CCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccc-cCC
Confidence 5 9999999998765 233344444446665678899999876 888888 899
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeec---------------------------------------------------
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVG--------------------------------------------------- 188 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------------------------------------------------- 188 (312)
|+.++++..||+|++|++.+++++..+..
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 99999999999999999999988764430
Q ss_pred CccceEEEE---EcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021453 189 DRHVVNQLE---PHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 189 ~~~~v~~v~---~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
+...+.++. |+..-+++|.|+.||+|.|||+...+++....|...++++.|.. ..+|++++.++.++.||.++++
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence 111112222 33334567889999999999999999888888999888777655 6799999999999999988874
Q ss_pred c
Q 021453 266 T 266 (312)
Q Consensus 266 ~ 266 (312)
.
T Consensus 360 l 360 (399)
T KOG0296|consen 360 L 360 (399)
T ss_pred e
Confidence 3
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-27 Score=202.88 Aligned_cols=230 Identities=15% Similarity=0.230 Sum_probs=186.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
+.+|..++|||..| .++++-..|.|++||.+-+.+ ...+ ..|.++|..++|+|.+.+++++ .|
T Consensus 9 SsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tl--------------i~rF-deHdGpVRgv~FH~~qplFVSGGDD 72 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTL--------------IDRF-DEHDGPVRGVDFHPTQPLFVSGGDD 72 (1202)
T ss_pred cccccceecCCCCC-EEEEeecCceeeeehhhhhhH--------------Hhhh-hccCCccceeeecCCCCeEEecCCc
Confidence 67899999999984 899999999999999998763 2222 8899999999999999999997 58
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
-.|++|+..+. +++.++.||.+- |..+.| ++.-.+++++++|.+|+||++.+.+++..+.+
T Consensus 73 ykIkVWnYk~r----------------rclftL~GHlDY--VRt~~F-HheyPWIlSASDDQTIrIWNwqsr~~iavltG 133 (1202)
T KOG0292|consen 73 YKIKVWNYKTR----------------RCLFTLLGHLDY--VRTVFF-HHEYPWILSASDDQTIRIWNWQSRKCIAVLTG 133 (1202)
T ss_pred cEEEEEecccc----------------eehhhhccccce--eEEeec-cCCCceEEEccCCCeEEEEeccCCceEEEEec
Confidence 89999999988 899999999955 999998 89999999999999999999999999999999
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC------------------------------CCCCChhhhhhhh
Q 021453 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP------------------------------PLPDNAEKIMKAN 238 (312)
Q Consensus 189 ~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~------------------------------~~~~~~~~~~~~~ 238 (312)
|..-|.|.+|+|....++++|.|.+||+||+.+-+.. .+.+|...+ .-+
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV-Nwa 212 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV-NWA 212 (1202)
T ss_pred CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc-ceE
Confidence 9999999999999999999999999999998643211 122344444 333
Q ss_pred ccCCCCceeEEecCCceEEEEEecccCccce------------eEeecCCCccCCCCCCCeEEEeecCC
Q 021453 239 KQGREDHSRITLTPDVIMHVLRLQRRQTLAY------------RERRYNAADFESDEEEGETYLLGFSD 295 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~ 295 (312)
.+++.-.++++|+.|..+++|+++....... .-+-|...-+.+..++..+-+||.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 4566678999999999999999865422211 12334444555666677777887654
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=5.3e-26 Score=185.54 Aligned_cols=233 Identities=18% Similarity=0.286 Sum_probs=185.0
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
+|+.+|++++|+|++ ++|++++.||.+++|++.+++. .. ....|...+..+.|+|++++++++
T Consensus 7 ~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~--------------~~-~~~~~~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 7 GHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGEL--------------LR-TLKGHTGPVRDVAASADGTYLASGS 70 (289)
T ss_pred ccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCc--------------EE-EEecCCcceeEEEECCCCCEEEEEc
Confidence 589999999999998 7999999999999999987641 11 225677888999999999878776
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.++.|++|++.++ +....+..|... +.++.| +++++++++++.++.|.+||+.+++....+
T Consensus 71 ~~~~i~i~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 71 SDKTIRLWDLETG----------------ECVRTLTGHTSY--VSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CCCeEEEEEcCcc----------------cceEEEeccCCc--EEEEEE-cCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 5999999999876 567777777755 999999 888889999888999999999999998888
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
..|...|.+++|+|++.++++++.|+.|++||++..+. ..+..+...+ ....+.+++..+++++.++.+++|+++...
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV-NSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcccc-ceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 88999999999999988898888899999999986653 4444444444 444577777788888889999999986432
Q ss_pred ccc----------eeEeecCCCccCCCCCCCeEEEeecCCC
Q 021453 266 TLA----------YRERRYNAADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 266 ~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 296 (312)
... ...+.++...+.+...++.+++++...+
T Consensus 211 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 211 1144445455555555777888887643
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=2.8e-26 Score=187.05 Aligned_cols=235 Identities=17% Similarity=0.217 Sum_probs=181.7
Q ss_pred EecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEE
Q 021453 16 YCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA 95 (312)
Q Consensus 16 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 95 (312)
....++.......|..-|+|+.|+|+| .+|++++.||++.+||=.+++.+..+. . ..+|.+.|.+++
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~---------~---~~aHkGsIfals 242 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELE---------D---SDAHKGSIFALS 242 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEec---------C---CCCccccEEEEE
Confidence 333333333335799999999999999 899999999999999999887432211 0 258999999999
Q ss_pred EccCCCeEEEe-cCCcEEEEEcCCCcCC---------CC------------------CcCCcccccCCCCCceEecccCC
Q 021453 96 YSNTSELLISY-NDELVYLFEKNMGLGP---------SP------------------LSLSPEDLQKREEPQVYSGHRNS 147 (312)
Q Consensus 96 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~---------~~------------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (312)
|+||++.+++. .|.+++|||+.+.... .+ ..+..-.......++.+.||...
T Consensus 243 WsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 243 WSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS 322 (603)
T ss_pred ECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence 99999988886 6999999999876410 00 11111223444677888999966
Q ss_pred ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE-------------------------------------------
Q 021453 148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR------------------------------------------- 184 (312)
Q Consensus 148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~------------------------------------------- 184 (312)
|+++.. ++++.+|++|+.||.|.-|+..++..-+
T Consensus 323 --ITaLtv-~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~ 399 (603)
T KOG0318|consen 323 --ITALTV-SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKS 399 (603)
T ss_pred --eeEEEE-cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccc
Confidence 999998 9999999999999999999976542210
Q ss_pred --------------------------------------------------------------------------------
Q 021453 185 -------------------------------------------------------------------------------- 184 (312)
Q Consensus 185 -------------------------------------------------------------------------------- 184 (312)
T Consensus 400 ~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 400 EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE 479 (603)
T ss_pred ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence
Q ss_pred --EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC--CCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 185 --LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 185 --~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.+..|.++|+++++||++.+||++...+.+-+||..+.+.. ...-|+..+ .+..|+|++.++++++-|..+.||+
T Consensus 480 e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI-~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 480 EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI-NCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE-EEEEeCCCceEEEeccccceEEEEE
Confidence 23357889999999999999999999999999999888752 233366666 4455899999999999999999999
Q ss_pred ecccCcc
Q 021453 261 LQRRQTL 267 (312)
Q Consensus 261 ~~~~~~~ 267 (312)
+.++...
T Consensus 559 v~kP~~~ 565 (603)
T KOG0318|consen 559 VKKPAKH 565 (603)
T ss_pred ccChhhh
Confidence 9876544
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1.5e-26 Score=188.66 Aligned_cols=223 Identities=14% Similarity=0.192 Sum_probs=164.0
Q ss_pred CcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021453 24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 24 ~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
..|-+|..+++-..|+|.| .++|+|...|+|||||....+. ..++-+..-.++|..|+|+++++.|
T Consensus 53 ~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~h-------------iLKnef~v~aG~I~Di~Wd~ds~RI 118 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEH-------------ILKNEFQVLAGPIKDISWDFDSKRI 118 (603)
T ss_pred eeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcce-------------eeeeeeeecccccccceeCCCCcEE
Confidence 3345799999999999998 8999999999999999876432 1222224447889999999999866
Q ss_pred EE-ec----CCcEEEEEcCCCcCCC-------------------------CCcCCcccccCCCCCceEecccCCceeeEE
Q 021453 104 IS-YN----DELVYLFEKNMGLGPS-------------------------PLSLSPEDLQKREEPQVYSGHRNSQTVKGV 153 (312)
Q Consensus 104 ~s-~~----d~~i~iwd~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 153 (312)
++ +. -|.+.+||..+..+.. +..+.+.+-.+++....+..|.. .|.++
T Consensus 119 ~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk--FV~~V 196 (603)
T KOG0318|consen 119 AAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK--FVNCV 196 (603)
T ss_pred EEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc--ceeeE
Confidence 66 42 2457788876543211 11111111233344444555664 49999
Q ss_pred EEecCCCCEEEEeccCceEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC------
Q 021453 154 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF------ 224 (312)
Q Consensus 154 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~------ 224 (312)
.| +|+|.++++++.||++.+||=.+++.+..+. +|.+.|..++|+||+..++|++.|.+++|||+.+.++
T Consensus 197 Ry-sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 197 RY-SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred EE-CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec
Confidence 99 9999999999999999999999999999997 8999999999999999999999999999999875432
Q ss_pred --------------------------------------CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 225 --------------------------------------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 225 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
..+.+|.+.+ +....++++.++++++.||.|.-|++..+
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I-TaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI-TALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccce-eEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 1122344444 33345666777888888888888876554
No 51
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.1e-27 Score=201.27 Aligned_cols=248 Identities=17% Similarity=0.184 Sum_probs=184.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC-----------------------CC---------------
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-----------------------PI--------------- 69 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------------------~~--------------- 69 (312)
.|.+.|.++.|+++| ++||+|+.|+.|+||.+...+... ..
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 599999999999999 899999999999999987611100 00
Q ss_pred CCCC-----Ccccc--cccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe
Q 021453 70 SSDT-----PVDTF--CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS 142 (312)
Q Consensus 70 ~~~~-----~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (312)
+.+. .+-.| .+...+.+|.+.|..|.|+.++-+|.++.|.+|++|++... .+++.|.
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----------------~CL~~F~ 407 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----------------ECLKVFS 407 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----------------ceeeEEe
Confidence 0000 00000 12233478999999999999877666678999999999887 7888886
Q ss_pred cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 143 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 143 ~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
|.+ +|+||+|++.|.+|+++|+-||.|+||++...+.+. +..-..-|++++|.|+|++.+.|+.+|..++|+....
T Consensus 408 -Hnd--fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 408 -HND--FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred -cCC--eeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 664 499999966689999999999999999998776554 4334478999999999999999999999999998876
Q ss_pred CCCC---CCC------ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc------------CccceeEeecCCCccCC
Q 021453 223 DFPP---LPD------NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR------------QTLAYRERRYNAADFES 281 (312)
Q Consensus 223 ~~~~---~~~------~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~------------~~~~~~~~~~~~~~~~~ 281 (312)
++.. +.. ....|...-....+...++..+.|..|||+|.+.. .......+..++..+.+
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 5311 110 11234344333345557888899999999998332 22233367778999999
Q ss_pred CCCCCeEEEeecCCC
Q 021453 282 DEEEGETYLLGFSDS 296 (312)
Q Consensus 282 ~~~~~~v~~~~~~~~ 296 (312)
..++-.||+|..+..
T Consensus 564 ~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDSF 578 (712)
T ss_pred eecCceEEEEeCCCC
Confidence 999999999997443
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=6.2e-28 Score=187.68 Aligned_cols=225 Identities=17% Similarity=0.276 Sum_probs=185.4
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
....|+|+.+.. ..+++|..|.+|+|||..+.. |...+ .+|.+.|.|+.|. .+.+++| +
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~--------------c~~~L-~GHtGSVLCLqyd--~rviisGSS 255 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLE--------------CLKIL-TGHTGSVLCLQYD--ERVIVSGSS 255 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEeccccHH--------------HHHhh-hcCCCcEEeeecc--ceEEEecCC
Confidence 467899999864 579999999999999998876 55544 8999999999885 4588887 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee---EE
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---VR 184 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~ 184 (312)
|.+|++||.+++ +++.++-+|... |..+.| +..++++++.|.++.+||+....- .+
T Consensus 256 DsTvrvWDv~tg----------------e~l~tlihHcea--VLhlrf---~ng~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 256 DSTVRVWDVNTG----------------EPLNTLIHHCEA--VLHLRF---SNGYMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred CceEEEEeccCC----------------chhhHHhhhcce--eEEEEE---eCCEEEEecCCceeEEEeccCchHHHHHH
Confidence 999999999998 899999999866 999998 467999999999999999986543 34
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.+.+|...|+.+.| +.+++++++.|.+|++|++.+.+ +.++.+|...+. +..-.++++++|+.|.+|++|++..
T Consensus 315 VLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIA---ClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIA---CLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred HHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccce---ehhccCeEEEecCCCceEEEEeccc
Confidence 56799999999999 55699999999999999999987 477888888772 2344678999999999999999877
Q ss_pred cCcccee--------EeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021453 264 RQTLAYR--------ERRYNAADFESDEEEGETYLLGFSDSDAS 299 (312)
Q Consensus 264 ~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 299 (312)
+..+... .-..+...+.++.-+|.+-+||+..+.+.
T Consensus 390 G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred cHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCC
Confidence 6433221 33456677888888999999999877654
No 53
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.7e-26 Score=197.79 Aligned_cols=251 Identities=11% Similarity=0.047 Sum_probs=176.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-cCC
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDE 109 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~ 109 (312)
.|.....++++ ..+++++.+.....|+...+..+.......... .....+.+|.+.|.+++|+| ++.+|+++ .|+
T Consensus 22 ~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~--~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 22 NVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA--SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCC--CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 45555666665 456777778888888876544321111111111 11123478999999999999 77888886 599
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCeeEEEeec
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
.|++||+....... ....++..+.+|... |.+++| +|++ ++|++++.|+.|++||+.+++.+..+.+
T Consensus 99 tIkIWdi~~~~~~~---------~~~~~l~~L~gH~~~--V~~l~f-~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 99 TIMGWGIPEEGLTQ---------NISDPIVHLQGHTKK--VGIVSF-HPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred EEEEEecCCCcccc---------ccCcceEEecCCCCc--EEEEEe-CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 99999997541000 001345678888866 999999 7875 7999999999999999999999999999
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEec----CCceEEEEEecc
Q 021453 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLT----PDVIMHVLRLQR 263 (312)
Q Consensus 189 ~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~i~~~~~ 263 (312)
|...|.+++|+|++.+|++++.|++|++||++++.. ..+..|.........+.++...+++.+ .|+.+++||++.
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 999999999999999999999999999999998764 445556544433344556555666543 478999999876
Q ss_pred cCcccee------------EeecCCCccCCC-CCCCeEEEeecCCCC
Q 021453 264 RQTLAYR------------ERRYNAADFESD-EEEGETYLLGFSDSD 297 (312)
Q Consensus 264 ~~~~~~~------------~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 297 (312)
....... .+.++...+... ..++.|.++++.++.
T Consensus 247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 4332211 233444444443 346778888887654
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-27 Score=176.52 Aligned_cols=200 Identities=16% Similarity=0.197 Sum_probs=165.2
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~ 106 (312)
.|...|.++.|++...+.+++++-|++|++|+....+ .+++| .+|...|...+|+|.- .+++++
T Consensus 102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---------Sv~Tf------~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---------SVQTF------NGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred hhhhheEEeccccccceeEEeeccCCceEeecCCCCc---------ceEee------cCCccEEEEEecCCCCCCeEEEc
Confidence 4899999999999777889999999999999988665 23333 8899999999999966 577775
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEE
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVR 184 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~ 184 (312)
+|+.+++||++.. .....+..|... +.++.|..-+.+.|++|+.|+.|++||++.- .++.
T Consensus 167 Sgd~~l~lwdvr~~----------------gk~~~i~ah~~E--il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSP----------------GKFMSIEAHNSE--ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF 228 (311)
T ss_pred cCCceEEEEEecCC----------------CceeEEEeccce--eEeecccccCCcEEEecCCCceEEEEehhhccccce
Confidence 5999999999875 344458888865 9999996667888999999999999998864 5688
Q ss_pred EeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 185 LMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~-~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.+.+|.-.|..++|||... .||+++.|-++||||...+. +.+..-|+.-+....+..-.+.++++.+-|..++||+
T Consensus 229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 8899999999999999865 59999999999999998664 3445556666655554444788999999999999997
No 55
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=7.6e-26 Score=191.79 Aligned_cols=230 Identities=13% Similarity=0.182 Sum_probs=193.4
Q ss_pred cceEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 31 IRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
.+|..++|+..| ..||.|+. -|.+-+|+.++... .... .+|...+++++++|||+++|+| .|
T Consensus 308 ~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsY--------------VlKQ-QgH~~~i~~l~YSpDgq~iaTG~eD 371 (893)
T KOG0291|consen 308 QKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESY--------------VLKQ-QGHSDRITSLAYSPDGQLIATGAED 371 (893)
T ss_pred ceeeEEEecccC-CEEEEcCCccceEEEEEeeccce--------------eeec-cccccceeeEEECCCCcEEEeccCC
Confidence 479999999999 78988865 48999999987652 2222 7899999999999999999997 69
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
|+|+|||..++ -+..+|..|... |+.+.| +..++.+++.+.||+|+.||+...+..+++..
T Consensus 372 gKVKvWn~~Sg----------------fC~vTFteHts~--Vt~v~f-~~~g~~llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 372 GKVKVWNTQSG----------------FCFVTFTEHTSG--VTAVQF-TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred CcEEEEeccCc----------------eEEEEeccCCCc--eEEEEE-EecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence 99999999988 689999999987 999999 89999999999999999999999998888875
Q ss_pred Cc-cceEEEEEcCCCCeEEEEeCCC-cEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021453 189 DR-HVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 189 ~~-~~v~~v~~~p~~~~l~t~~~d~-~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
.. -...+++..|.|..+++|+.|. .|.+|+++++++ ..+.+|..++. ...+++.+..|++++-|.++|+|++-...
T Consensus 433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs-~l~f~~~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVS-GLSFSPDGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcce-eeEEccccCeEEeccccceEEEEEeeccC
Confidence 43 3567889999999999999776 699999999985 66778888874 44478888999999999999999985441
Q ss_pred c----------cceeEeecCCCccCCCCCCCeEEEeecCCC
Q 021453 266 T----------LAYRERRYNAADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 266 ~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 296 (312)
. ..-..++|++..++...-+|.+-++|..++
T Consensus 512 ~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 512 GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 1 111277889999998888888988887655
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=6.9e-26 Score=172.85 Aligned_cols=201 Identities=14% Similarity=0.187 Sum_probs=166.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
.||++.|..+.|.+++ +.+++++.|.+++.||+++++. .... ..|..-+.++.-+.-|. ++.+
T Consensus 87 kgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~~--------------~rk~-k~h~~~vNs~~p~rrg~~lv~S 150 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGKR--------------IRKH-KGHTSFVNSLDPSRRGPQLVCS 150 (338)
T ss_pred ccccceeEeeeeccCC-CEEEEecCCceEEEEeccccee--------------eehh-ccccceeeecCccccCCeEEEe
Confidence 4799999999999999 8999999999999999999983 3333 78888888888555565 4455
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
++ |+++++||+++. ..++++.... . ++++.| ...+..+.+|+-|+.|++||++.+....
T Consensus 151 gsdD~t~kl~D~R~k----------------~~~~t~~~ky-q--ltAv~f-~d~s~qv~sggIdn~ikvWd~r~~d~~~ 210 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKK----------------EAIKTFENKY-Q--LTAVGF-KDTSDQVISGGIDNDIKVWDLRKNDGLY 210 (338)
T ss_pred cCCCceEEEEeeccc----------------chhhccccce-e--EEEEEe-cccccceeeccccCceeeeccccCcceE
Confidence 54 999999999987 5666665332 2 899999 8899999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-----CCCCCCCh----hhhhhhhccCCCCceeEEecCCce
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNA----EKIMKANKQGREDHSRITLTPDVI 255 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~d~~ 255 (312)
.+.+|..+|+.+..+|.|.++.+-+.|.++++||++... +..+.++. ...+.+ .|+++++.+-+++.|..
T Consensus 211 ~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c-swsp~~~~i~ags~dr~ 289 (338)
T KOG0265|consen 211 TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC-SWSPNGTKITAGSADRF 289 (338)
T ss_pred EeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee-eccCCCCccccccccce
Confidence 999999999999999999999999999999999987542 23333332 223333 37888999999999999
Q ss_pred EEEEEeccc
Q 021453 256 MHVLRLQRR 264 (312)
Q Consensus 256 i~i~~~~~~ 264 (312)
+++||....
T Consensus 290 vyvwd~~~r 298 (338)
T KOG0265|consen 290 VYVWDTTSR 298 (338)
T ss_pred EEEeecccc
Confidence 999996654
No 57
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=4.1e-26 Score=183.00 Aligned_cols=237 Identities=14% Similarity=0.204 Sum_probs=177.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.|||.......+.... ...+..+..||...-++++|++...-.+++++.|++|.+||+...... -....+
T Consensus 149 v~Vfd~tk~~s~~~~~~-~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--------~~~~~p 219 (422)
T KOG0264|consen 149 VYVFDYTKHPSKPKASG-ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--------DKVVDP 219 (422)
T ss_pred EEEEEeccCCCcccccc-cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC--------Cccccc
Confidence 46788765433332221 222233335788888899999987779999999999999999865421 111245
Q ss_pred cccccCCCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021453 81 RHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
...+.+|...|..++|++... ++++. .|+.+.|||++++ +.++.+...+|... |.+++|.+-
T Consensus 220 ~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------------~~~~~~~~~ah~~~--vn~~~fnp~ 283 (422)
T KOG0264|consen 220 KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------------TSKPSHSVKAHSAE--VNCVAFNPF 283 (422)
T ss_pred eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------------CCCCcccccccCCc--eeEEEeCCC
Confidence 566689999999999999775 55554 6999999999952 11566777888876 999999444
Q ss_pred CCCEEEEeccCceEEEEeccCC-eeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC-------------
Q 021453 159 NDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD------------- 223 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~------------- 223 (312)
++..||+|+.|++|.+||+|+. +++..+.+|...|..|.|+|.... ||+++.|+.+.|||+..-.
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp 363 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP 363 (422)
T ss_pred CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCc
Confidence 5667899999999999999874 578889999999999999998754 8999999999999986421
Q ss_pred --CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021453 224 --FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
+..-.+|...+....|...+...+++.+.|+.++||.+.
T Consensus 364 EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 364 ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 122236777776666544467788899999999999865
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=193.71 Aligned_cols=229 Identities=17% Similarity=0.268 Sum_probs=182.6
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||.+.|.++++..-+ .++++|+.|.++++||..+++ |...+ .+|...+.++...+ .+++++
T Consensus 246 ~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~--------------C~~~l-~gh~stv~~~~~~~--~~~~sg 307 (537)
T KOG0274|consen 246 VGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGE--------------CTHSL-QGHTSSVRCLTIDP--FLLVSG 307 (537)
T ss_pred cCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCc--------------EEEEe-cCCCceEEEEEccC--ceEeec
Confidence 4799999999998744 899999999999999999998 44444 78999998886543 466665
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.|.+|++|+++++ ..+..+.+|... |.++.+ + +.++++|+.|++|++||+.+++++..
T Consensus 308 s~D~tVkVW~v~n~----------------~~l~l~~~h~~~--V~~v~~-~--~~~lvsgs~d~~v~VW~~~~~~cl~s 366 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNG----------------ACLNLLRGHTGP--VNCVQL-D--EPLLVSGSYDGTVKVWDPRTGKCLKS 366 (537)
T ss_pred cCCceEEEEeccCc----------------ceEEEecccccc--EEEEEe-c--CCEEEEEecCceEEEEEhhhceeeee
Confidence 5999999999988 788888888866 999987 4 89999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC--CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+.+|...|+++.+.+. ..+++|+.|++|++||+.+. ++.++.+|..-+... ...+..|++++.|+.|++||...
T Consensus 367 l~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l---~~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 367 LSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL---LLRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred ecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc---ccccceeEeccccccEEEeeccc
Confidence 9999999999988665 88999999999999999998 467777776666322 33467999999999999999877
Q ss_pred cCccceeEee---------cCCCccCCCCCCCeEEEeecCCCCC
Q 021453 264 RQTLAYRERR---------YNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 264 ~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
.+.....+-. .....+.....++.+.++|...+..
T Consensus 443 ~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred CceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 6443222111 0112333334566677777766643
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-25 Score=186.45 Aligned_cols=249 Identities=17% Similarity=0.260 Sum_probs=192.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.+|+-.+.+...+... +...|+++.|+++| ..|++|..+|.|.|||..+.+ ..
T Consensus 199 vylW~~~s~~v~~l~~~-----------~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k--------------~~ 252 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSF-----------GEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQK--------------KT 252 (484)
T ss_pred EEEEecCCCceEEeEec-----------CCCceEEEEECCCC-CEEEEeecCCeEEEEehhhcc--------------cc
Confidence 56788777664444433 24579999999999 899999999999999998776 33
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+...|...|.+++|+ +..+.++ .++.|..+|++... .....+.+|... |+.+.| +++
T Consensus 253 ~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~---------------~~~~~~~~H~qe--VCgLkw-s~d 312 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ---------------HVVSTLQGHRQE--VCGLKW-SPD 312 (484)
T ss_pred ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch---------------hhhhhhhcccce--eeeeEE-CCC
Confidence 33323399999999998 5567776 59999999998762 233347788876 999999 999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEe--CCCcEEEccCCCCCCCCCCCChhhhhh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCG--IEKTVKLWAPMPTDFPPLPDNAEKIMK 236 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~ 236 (312)
++++++|+.|+.+.|||....+++..+..|.+.|..++|+|-. ..||+|+ .|+.|++||..++...........|..
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs 392 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS 392 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee
Confidence 9999999999999999998888999999999999999999965 4588876 899999999998876444445555545
Q ss_pred hhccCCC-CceeEE-ecCCceEEEEEecccCc----------cceeEeecCCCccCCCCCCCeEEEeecCCC
Q 021453 237 ANKQGRE-DHSRIT-LTPDVIMHVLRLQRRQT----------LAYRERRYNAADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 237 ~~~~~~~-~~~l~s-~~~d~~i~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 296 (312)
+. |++. .+++.+ |-.+..|.+|+..+... ..+...+|++..+.+...++.+-+|.+-+.
T Consensus 393 L~-Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 393 LI-WSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EE-EcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 55 5554 455555 44568999998744321 123377888888888888888988887664
No 60
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-26 Score=197.52 Aligned_cols=223 Identities=14% Similarity=0.226 Sum_probs=174.2
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|-+||+......+++...+ .|...++++.|++..+++|++|+.||+|++||++..+- .
T Consensus 112 i~vWdlnk~~rnk~l~~f~--------EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--------------~ 169 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFN--------EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--------------K 169 (839)
T ss_pred EEEEecCccccchhhhHhh--------hhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--------------c
Confidence 4588887643344433321 38899999999999999999999999999999997761 1
Q ss_pred cccccCCCccEEEEEEccCC-CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021453 81 RHLIGKNNIHITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
. ...+..+.|..++|+|.. ..++++ ..|.+++||++... +....+..|.++ |.++.| +|
T Consensus 170 ~-t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---------------r~~~k~~AH~Gp--V~c~nw-hP 230 (839)
T KOG0269|consen 170 S-TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---------------RCEKKLTAHNGP--VLCLNW-HP 230 (839)
T ss_pred c-cccccchhhhceeeccCCCceEEEecCCceEEEeeccCch---------------hHHHHhhcccCc--eEEEee-cC
Confidence 1 125567889999999965 477776 68999999998753 566778899976 999999 89
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEEEeec-CccceEEEEEcCCCCe-EEEEe--CCCcEEEccCCCCCC--CCCCCChh
Q 021453 159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPM-FATCG--IEKTVKLWAPMPTDF--PPLPDNAE 232 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~-l~t~~--~d~~i~iwd~~~~~~--~~~~~~~~ 232 (312)
++.+||+|+.|++|+|||+.+++......- ...+|..|+|-|..++ ||+++ .|-.|+|||++..-+ .++..|..
T Consensus 231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 999999999999999999986554333222 2368999999999887 88776 678999999987754 66777777
Q ss_pred hhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 233 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+....|.+.+...+.+++.|+.+..-.++..
T Consensus 311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 311 SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 77666666668889999999998765544443
No 61
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=4.6e-26 Score=182.68 Aligned_cols=219 Identities=21% Similarity=0.282 Sum_probs=175.3
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY- 106 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~- 106 (312)
|.+.|+.+..-|+++.++|+++..+.+.|||..+..-.. .....+.+...+.+|...-++++|++... .|+++
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~-----~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP-----KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc-----cccccCCCceEEEeecccccccccccccceeEeecc
Confidence 889999999999999999999999999999987543111 11113345555688888788999999776 55665
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc--CCeeEE
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK--GGKLVR 184 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~--~~~~~~ 184 (312)
.|+.|++||+...... -....+...+.+|... |..++|+..+...+++++.|+.+.|||++ +.++..
T Consensus 198 ~d~~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~--VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 198 DDHTICLWDINAESKE---------DKVVDPKTIFSGHEDV--VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred CCCcEEEEeccccccC---------CccccceEEeecCCcc--eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence 6999999999765211 0111456678889866 99999965567788999999999999999 566677
Q ss_pred EeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 185 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
..++|.+.|++++|+|-+.. |||||.|++|++||++... +.++.+|...++..-|-......|++.+.|+.+.+||+
T Consensus 267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 78899999999999996654 9999999999999999764 68888999999777654447888999999999999998
Q ss_pred cc
Q 021453 262 QR 263 (312)
Q Consensus 262 ~~ 263 (312)
.+
T Consensus 347 s~ 348 (422)
T KOG0264|consen 347 SR 348 (422)
T ss_pred cc
Confidence 65
No 62
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=7.1e-25 Score=190.06 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=158.5
Q ss_pred EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEEe-cCCcEEEEEcCCCcCCCCCc
Q 021453 49 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLS 126 (312)
Q Consensus 49 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 126 (312)
|+.++.|++|+..... ....+.+|...|.+++|+|+ +.+|+++ .|+.|++||+.++.....
T Consensus 50 GG~~gvI~L~~~~r~~---------------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-- 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---------------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-- 112 (568)
T ss_pred CCceeEEEeeecCCCc---------------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--
Confidence 5567888888876442 12223789999999999997 6788886 599999999975410000
Q ss_pred CCcccccCCCCCceEecccCCceeeEEEEecCCCCE-EEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE
Q 021453 127 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 205 (312)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l 205 (312)
....+...+.+|... |.+++| +|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|
T Consensus 113 ------~i~~p~~~L~gH~~~--V~sVaf-~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 113 ------EIKDPQCILKGHKKK--ISIIDW-NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred ------ccccceEEeecCCCc--EEEEEE-CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence 000234467788865 999999 898875 5789999999999999998877775 56789999999999999
Q ss_pred EEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhc----cCCCCceeEEecCCc----eEEEEEecccCcccee-E----
Q 021453 206 ATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANK----QGREDHSRITLTPDV----IMHVLRLQRRQTLAYR-E---- 271 (312)
Q Consensus 206 ~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~l~s~~~d~----~i~i~~~~~~~~~~~~-~---- 271 (312)
++++.|+.|+|||++++.. ..+.+|...+..... +++++.++++++.++ .+++||++.....+.. .
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~ 262 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA 262 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC
Confidence 9999999999999998864 556666654432222 236777888877664 7999999864333222 1
Q ss_pred --------eecCCCccCCCCCCCeEEEeecCCC
Q 021453 272 --------RRYNAADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 272 --------~~~~~~~~~~~~~~~~v~~~~~~~~ 296 (312)
..+.+..+.++..++.++++++..+
T Consensus 263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 1122344555666777888887554
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=2e-25 Score=175.28 Aligned_cols=211 Identities=14% Similarity=0.297 Sum_probs=166.8
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--cCCCC--------CCCCcccccccccccCCCccEEEEEEc
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW--YSPIS--------SDTPVDTFCPRHLIGKNNIHITGLAYS 97 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~ 97 (312)
||...|.+++..+++ ..+++|+.|..|+||+..+... ..... .......-.+...+.+|.++|.++.|+
T Consensus 191 GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred ccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 899999999999999 8999999999999999332110 00000 011112223445558999999999999
Q ss_pred cCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEec
Q 021453 98 NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 177 (312)
Q Consensus 98 ~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~ 177 (312)
+.+..+.++-|.+|+.||+.++ .....+.+.. .+.++.+ +|..++|++|+.|..+++||.
T Consensus 270 d~~v~yS~SwDHTIk~WDletg----------------~~~~~~~~~k---sl~~i~~-~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 270 DATVIYSVSWDHTIKVWDLETG----------------GLKSTLTTNK---SLNCISY-SPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred CCCceEeecccceEEEEEeecc----------------cceeeeecCc---ceeEeec-ccccceeeecCCCCceeecCC
Confidence 9444444456999999999988 5665555443 3899999 899999999999999999999
Q ss_pred cCCe---eEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEec
Q 021453 178 KGGK---LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLT 251 (312)
Q Consensus 178 ~~~~---~~~~~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 251 (312)
+++. ...++.+|...|.++.|+|...+ |++++.|+++++||+++.. +..+.+|...++...|. ++.++++|+
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGG 407 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGG 407 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEecc
Confidence 8753 35678899999999999998877 9999999999999999876 57788888888777654 346899999
Q ss_pred CCceEEEEEe
Q 021453 252 PDVIMHVLRL 261 (312)
Q Consensus 252 ~d~~i~i~~~ 261 (312)
.|..++++.-
T Consensus 408 aD~~l~i~~~ 417 (423)
T KOG0313|consen 408 ADNKLRIFKG 417 (423)
T ss_pred CcceEEEecc
Confidence 9999999863
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=181.38 Aligned_cols=229 Identities=14% Similarity=0.221 Sum_probs=172.8
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN- 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~- 107 (312)
...|+++.|-.+| ++||+|...|.|++||+.+.. ....+.+|+.++..+.|+|++. .+++++
T Consensus 68 k~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~---------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sD 131 (487)
T KOG0310|consen 68 KDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRV---------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSD 131 (487)
T ss_pred ccceeEEEeecCC-eEEEccCCcCcEEEeccccHH---------------HHHHHhhccCceeEEEecccCCeEEEecCC
Confidence 5679999999999 899999999999999966532 2223389999999999999886 666675
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEEEe
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLM 186 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~ 186 (312)
|+.+++||+.+. .....+.+|.+- |.+.+|.+.++..+++|+.||.|++||++.. ..+.++
T Consensus 132 d~v~k~~d~s~a----------------~v~~~l~~htDY--VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 132 DKVVKYWDLSTA----------------YVQAELSGHTDY--VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred CceEEEEEcCCc----------------EEEEEecCCcce--eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence 778899999886 444477888855 9999995556778999999999999999976 666666
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
. |..+|..+.+-|.|..+++++ ...|++||+.++. +..+..|.+.+ ++.....++..|++++-|+.+++|++.+.
T Consensus 194 n-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtV-TcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 194 N-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTV-TCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred c-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceE-EEEEeecCCceEeecccccceEEEEccce
Confidence 5 889999999999999999997 4689999998554 34444466666 55556778899999999999999996544
Q ss_pred Ccccee-EeecCCCccCCCCCCCeEEEeecCCCC
Q 021453 265 QTLAYR-ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 265 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
+.++. .++...-++... ++++..+++.++|-
T Consensus 271 -Kvv~s~~~~~pvLsiavs-~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 271 -KVVHSWKYPGPVLSIAVS-PDDQTVVIGMSNGL 302 (487)
T ss_pred -EEEEeeecccceeeEEec-CCCceEEEecccce
Confidence 22222 222222222221 22336667776664
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=8e-27 Score=180.15 Aligned_cols=222 Identities=14% Similarity=0.214 Sum_probs=178.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.+||.-+++..+-+.-+. ...+-.+..+|.|+.|+.+. .++|+|+.||.|++|.+++++ |.
T Consensus 237 iEVWny~~GKlrKDLkYQA---qd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~--------------Cl 298 (508)
T KOG0275|consen 237 IEVWNYTTGKLRKDLKYQA---QDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQ--------------CL 298 (508)
T ss_pred eeeehhccchhhhhhhhhh---hcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecch--------------HH
Confidence 4689888776544332211 11122478899999999998 899999999999999999999 66
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+-..|...|+++.|+.|+..+.++ .|.++++.-+.++ ++++.|+||... |+...| .++
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----------------K~LKEfrGHsSy--vn~a~f-t~d 359 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----------------KCLKEFRGHSSY--VNEATF-TDD 359 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----------------hhHHHhcCcccc--ccceEE-cCC
Confidence 66667999999999999999877775 5999999999998 899999999965 999999 999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeec-----------------------------------------------Cccc
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVG-----------------------------------------------DRHV 192 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------------------------------------------~~~~ 192 (312)
|..+++++.||+|++|+.++.+++.+++. ..+.
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGd 439 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGD 439 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCc
Confidence 99999999999999999887765442221 0122
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 193 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 193 v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
..+.+.+|.|.++...++|+.++.|...++.+ .++.-|.+.++... -+|..+.+++.+.|+.+++|.
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~-HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLT-HHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccc-cCcccchhhhhcccchhhhcC
Confidence 34466788888888888999999999888876 55666777776665 567788999999999999994
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.4e-26 Score=178.09 Aligned_cols=221 Identities=11% Similarity=0.172 Sum_probs=172.9
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
..||..+|.|++=+|.....+++|+.||.|+|||+.... |...+ .+|.+.|..|++.. +.++.+
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f-~AH~G~V~Gi~v~~-~~~~tv 125 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTF-KAHEGLVRGICVTQ-TSFFTV 125 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhhee-ecccCceeeEEecc-cceEEe
Confidence 368999999999999776789999999999999999876 33333 88999999999987 456666
Q ss_pred ecCCcEEEEEcCCCc----------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CE
Q 021453 106 YNDELVYLFEKNMGL----------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EY 162 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~ 162 (312)
|.|.+|+.|-+.... .+....+.+|+.....+++.+.-.... +.++.| +|.. ..
T Consensus 126 gdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dt--i~svkf-NpvETsI 202 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADS--ISSVKF-NPVETSI 202 (433)
T ss_pred cCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCc--eeEEec-CCCcchh
Confidence 789999999854321 223345678888777788888766655 999999 6654 56
Q ss_pred EEEeccCceEEEEeccCCeeEE------------------------------------------EeecCccceEEEEEcC
Q 021453 163 VMSGSDCGHLFIWKKKGGKLVR------------------------------------------LMVGDRHVVNQLEPHP 200 (312)
Q Consensus 163 l~~~~~dg~v~iwd~~~~~~~~------------------------------------------~~~~~~~~v~~v~~~p 200 (312)
|++|..|+.|.+||++++++++ ..++|...|.++.|+|
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 7777799999999998876543 3346777899999999
Q ss_pred CCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhh--hhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021453 201 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKI--MKANKQGREDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 201 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
.|+.+++||.|++||||..+.+....+- |++.+ +-+..++.|..++++|+.|+.+++|.-+...+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~~SRdiY-htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHGHSRDIY-HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred CcchhccccccceEEEeecCCCcchhhh-hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999999999999877543322 33322 34556888999999999999999998654433
No 67
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=190.06 Aligned_cols=212 Identities=16% Similarity=0.216 Sum_probs=176.2
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|.+.|.+++.+|++ ..+++|+.|.+|++||..--.-.. .....+-....... -.-...|.++.+||||++||.+
T Consensus 452 AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~--gt~~k~lsl~~~rt-Lel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVP--GTQKKVLSLKHTRT-LELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred ccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccC--cccceeeeeccceE-EeccccEEEEEEcCCCcEEEEEe
Confidence 689999999999999 899999999999999986322100 00000000011111 1235779999999999999998
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
-|.++++|-+.+- +..-.+.||.-+ |.|+.. +|+++.+++|+.|.+|+||-++-|.|-+.+
T Consensus 528 LdnTVkVyflDtl----------------KFflsLYGHkLP--V~smDI-S~DSklivTgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 528 LDNTVKVYFLDTL----------------KFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred ccCeEEEEEecce----------------eeeeeecccccc--eeEEec-cCCcCeEEeccCCCceEEeccccchhhhhh
Confidence 5999999999876 677788899966 999999 999999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
-+|...|.++.|.|....+.++|.|+.|+-||-...+ +..+.+|...+...+ ..+++.++++++.|..|++|.-..
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa-v~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA-VSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeE-EcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999999999988765 688888988885544 788999999999999999998443
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.6e-24 Score=183.79 Aligned_cols=255 Identities=13% Similarity=0.163 Sum_probs=196.0
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++|+..+.++.+.+.+. .+.+..|.|.+ +++++|...|.+.+||+.+..++
T Consensus 396 ikiWn~~t~kciRTi~~~-------------y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l~-------------- 447 (888)
T KOG0306|consen 396 IKIWNRDTLKCIRTITCG-------------YILASKFVPGD-RYIVLGTKNGELQVFDLASASLV-------------- 447 (888)
T ss_pred EEEEEccCcceeEEeccc-------------cEEEEEecCCC-ceEEEeccCCceEEEEeehhhhh--------------
Confidence 578999888876666553 58899999977 89999999999999999987632
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ .+|.+.|.+++.+|+++.++++ .|.+|++||..-... .+... ......+..+++. -.. .|.++++ ||+
T Consensus 448 Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~--~k~lsl~~~rtLe-l~d--dvL~v~~-Spd 519 (888)
T KOG0306|consen 448 ETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQ--KKVLSLKHTRTLE-LED--DVLCVSV-SPD 519 (888)
T ss_pred hhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCccc--ceeeeeccceEEe-ccc--cEEEEEE-cCC
Confidence 222 6899999999999999988886 599999999864311 00000 0000111222332 222 3999999 999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 238 (312)
+++|+++=-|.+|+||-+++-+....+.+|.-||.++..+|+++.++|||.|+.|++|-+.-+.. ..+.+|...++...
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987764 77888999886554
Q ss_pred ccCCCCceeEEecCCceEEEEEecc---------cCcccee-EeecCCCccCCCCCCCeEEEee
Q 021453 239 KQGREDHSRITLTPDVIMHVLRLQR---------RQTLAYR-ERRYNAADFESDEEEGETYLLG 292 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 292 (312)
+.|...++++++.|+.++-||-.. +...+|- .-.|++..+.+...+-.+-.|.
T Consensus 600 -F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 600 -FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred -EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 667888999999999999997432 2333333 5566776666655544454444
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.4e-26 Score=179.32 Aligned_cols=179 Identities=21% Similarity=0.394 Sum_probs=143.1
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
||..+|.-+.|||+. ++|++++.|..+.+||..++.+... ...++...+.+.+|.|||..+++|+
T Consensus 267 gh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~~~--------------y~~~~~~S~~sc~W~pDg~~~V~Gs 331 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLRHL--------------YPSGLGFSVSSCAWCPDGFRFVTGS 331 (519)
T ss_pred cccCceEEEEECCCC-CeEEecCchHheeeccCCcchhhhh--------------cccCcCCCcceeEEccCCceeEecC
Confidence 689999999999998 8999999999999999999984332 2233455666777777776666653
Q ss_pred -CCcEEEEEcCCCc------------------------------------------------------------------
Q 021453 108 -DELVYLFEKNMGL------------------------------------------------------------------ 120 (312)
Q Consensus 108 -d~~i~iwd~~~~~------------------------------------------------------------------ 120 (312)
|+.+..||+....
T Consensus 332 ~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~L 411 (519)
T KOG0293|consen 332 PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLAL 411 (519)
T ss_pred CCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEE
Confidence 7777777665332
Q ss_pred -CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEc
Q 021453 121 -GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH 199 (312)
Q Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~ 199 (312)
.-.++.+..|++...+.++.+.||+....+..-||--.+..++++|++|+.|+||+..+++++..+.+|...|++|+|+
T Consensus 412 vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 412 VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence 0112345666688888888999998877777778844456899999999999999999999999999999999999999
Q ss_pred CCCCe-EEEEeCCCcEEEccCCC
Q 021453 200 PHIPM-FATCGIEKTVKLWAPMP 221 (312)
Q Consensus 200 p~~~~-l~t~~~d~~i~iwd~~~ 221 (312)
|..+. ||++|.||+||||.+..
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCc
Confidence 98875 99999999999998764
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=161.22 Aligned_cols=221 Identities=10% Similarity=0.150 Sum_probs=161.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
.+|...|.+++|+.+| ..|++|+.|+++++|++...+. .......+|.+.|-.++|+|... ++++
T Consensus 17 ~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~-------------~~~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRF-------------RKELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred hhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhh-------------hhhhcccCCCcchhhheeCCCCCcceEE
Confidence 4688999999999999 8999999999999999986652 22223378898999999999764 6666
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC-----
Q 021453 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----- 179 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~----- 179 (312)
+ +|.+|++||.+.+ ++.......... + -+.| +|+|+++++++.|..|.+.|.++
T Consensus 83 as~dk~ir~wd~r~~----------------k~~~~i~~~~en--i-~i~w-sp~g~~~~~~~kdD~it~id~r~~~~~~ 142 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSG----------------KCTARIETKGEN--I-NITW-SPDGEYIAVGNKDDRITFIDARTYKIVN 142 (313)
T ss_pred ecCCceEEEEEeccC----------------cEEEEeeccCcc--e-EEEE-cCCCCEEEEecCcccEEEEEecccceee
Confidence 5 6999999999987 555554433322 2 3445 66677666666666666666543
Q ss_pred ------------------------------------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 180 ------------------------------------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 180 ------------------------------------~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
-+++..+++|.....++.|+|+|++||+|+.|..+.+||+...-
T Consensus 143 ~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 143 EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred hhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh
Confidence 34455777899888999999999999999999999999988654
Q ss_pred C-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCccCCC
Q 021453 224 F-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESD 282 (312)
Q Consensus 224 ~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 282 (312)
. ..+. .....+....++-++++|++++.|..|-|-++.++...-.+........++-|
T Consensus 223 C~R~is-RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWH 281 (313)
T KOG1407|consen 223 CERCIS-RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWH 281 (313)
T ss_pred hheeec-cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEec
Confidence 3 4444 33444456668889999999999999877776666444333333333333333
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.9e-24 Score=172.58 Aligned_cols=202 Identities=17% Similarity=0.191 Sum_probs=167.2
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
++||...|+.+.|+|+. ..+++++.|..|++|...... ++ .....|..+|+.+..+|.|.||++
T Consensus 257 ~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s--------------~~-~~~~~h~~~V~~ls~h~tgeYlls 320 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS--------------EP-TSSRPHEEPVTGLSLHPTGEYLLS 320 (506)
T ss_pred ccCcceEEEEEEeccch-hheeecCCcceEEeecccccc--------------Cc-cccccccccceeeeeccCCcEEEE
Confidence 37899999999999998 799999999999999988664 22 233789999999999999999998
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ .|++..+.|++++ ..+...........+++.+| +|||-+|.+|..||.|+|||+.++..+.
T Consensus 321 As~d~~w~Fsd~~~g----------------~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwdlks~~~~a 383 (506)
T KOG0289|consen 321 ASNDGTWAFSDISSG----------------SQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWDLKSQTNVA 383 (506)
T ss_pred ecCCceEEEEEccCC----------------cEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEEcCCccccc
Confidence 7 5999999999887 44444433233334899999 9999999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.|.+|+++|..++|+.+|-+|++++.|+.|++||++..+. .++.-.....+....+...+.+|+.++.+-.|++..
T Consensus 384 ~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 384 KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 9999999999999999999999999999999999998763 444433333334455677888999997777777765
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=7.2e-25 Score=163.44 Aligned_cols=161 Identities=16% Similarity=0.231 Sum_probs=138.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||++.|..+-|.... +.|++++.|++||+||.+++..++. + .-..+|+++..+++|++|..+
T Consensus 140 ~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~s--------------L--~~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQS--------------L--EFNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred cCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEE--------------E--ecCCCCcceeeccCCCEEEEe
Confidence 4799999999999877 7888889999999999999974322 2 125678999999999999999
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
..+.|.+||..+- .+++.+.-. ..|.+.+. +|+...+++|++|..++.||..+++.+..+
T Consensus 203 ~gssV~Fwdaksf----------------~~lKs~k~P---~nV~SASL-~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 203 YGSSVKFWDAKSF----------------GLLKSYKMP---CNVESASL-HPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred cCceeEEeccccc----------------cceeeccCc---cccccccc-cCCCceEEecCcceEEEEEeccCCceeeec
Confidence 9999999999876 566655533 23888887 899999999999999999999999998886
Q ss_pred -ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 187 -VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 187 -~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
++|.++|.++.|+|+|...++||+||+||||.....+.
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 89999999999999999999999999999999776543
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.8e-24 Score=190.30 Aligned_cols=260 Identities=17% Similarity=0.216 Sum_probs=192.2
Q ss_pred CccceEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCe-ecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~--~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+...|.++..+|++ ..++||+ .|+.++||+...-- ...... .. --.....+..|.+.|.|+.|+|||++||+
T Consensus 12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~---~~-l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKN---EN-LPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhh---cc-cchhheeeccccCceeEEEECCCCCeEee
Confidence 45679999999999 8999999 89999999976321 000000 00 00111223679999999999999999999
Q ss_pred ec-CCcEEEEEcCC-CcCCCCC-cCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021453 106 YN-DELVYLFEKNM-GLGPSPL-SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 106 ~~-d~~i~iwd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
|+ |+.|.||.... +...... +-.......++....+.+|... |..++| +|++.+|++++.|++|.+|+.++.+.
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~W-sp~~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVNW-SPDDSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc--cceecc-CCCccEEEEecccceEEEEcccccee
Confidence 85 88899999874 1111111 1122334556778889999977 999999 99999999999999999999999999
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC---------------------------------------
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--------------------------------------- 223 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~--------------------------------------- 223 (312)
+..+.+|.+.|-.+.|.|-|++||+-+.|++|++|++..-.
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 99999999999999999999999999999999999954200
Q ss_pred --------------CCCCCCChhhhhhhhccCC-----C--------C----ceeEEecCCceEEEEEecccCcc-----
Q 021453 224 --------------FPPLPDNAEKIMKANKQGR-----E--------D----HSRITLTPDVIMHVLRLQRRQTL----- 267 (312)
Q Consensus 224 --------------~~~~~~~~~~~~~~~~~~~-----~--------~----~~l~s~~~d~~i~i~~~~~~~~~----- 267 (312)
-..+.+|..++ .++.+.+ . . ..+++|+.|+.+-||.......+
T Consensus 244 ~~~~~IieR~tWk~~~~LvGH~~p~-evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVGHSAPV-EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN 322 (942)
T ss_pred cceeEEEecCCceeeeeeecCCCce-EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence 00122343322 2222222 0 1 15678999999999986544222
Q ss_pred ------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021453 268 ------AYRERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 268 ------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
.-+.+++++..|....-+|.|+++.|+.++
T Consensus 323 lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 323 LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 112789999999999999999999998764
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.6e-24 Score=168.00 Aligned_cols=250 Identities=14% Similarity=0.176 Sum_probs=189.0
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|...|.-+.||++| ++||+++.|.+..+|.+....- +.....+.+|..+|..+.||||.++|+++
T Consensus 222 ~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred hCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc------------eeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 489999999999999 8999999999999999875431 24445558999999999999999988887
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.+..+.+||+.++ .+...+... ....+.+++| .|+|..+++|+.|+.+..||++ |..+..+
T Consensus 289 ~~e~~~lwDv~tg----------------d~~~~y~~~-~~~S~~sc~W-~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 289 FDEVLSLWDVDTG----------------DLRHLYPSG-LGFSVSSCAW-CPDGFRFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred chHheeeccCCcc----------------hhhhhcccC-cCCCcceeEE-ccCCceeEecCCCCcEEEecCC-cchhhcc
Confidence 4888999999998 565555433 1233899999 8999999999999999999997 5556666
Q ss_pred ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021453 187 VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 187 ~~~~-~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
++-. ..|.+++..++|+++++.+.|..|++++..+.....+.....++ .....+.++.+.+.--.+..+++||+....
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i-ts~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI-TSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCce-eEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 6543 57999999999999999999999999998876543333223333 444567788888888888899999986421
Q ss_pred ---------cccee---Eeec-CCCccCCCCCCCeEEEeecCCCCCCCCCCCceeeee
Q 021453 266 ---------TLAYR---ERRY-NAADFESDEEEGETYLLGFSDSDASSEGGGNQRECI 310 (312)
Q Consensus 266 ---------~~~~~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
...|+ .+.. +...++++.+++.||+|+-..+.--....|-.+.|+
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN 486 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN 486 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee
Confidence 11111 3332 336678888888999998877765444444444443
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=5.2e-24 Score=187.46 Aligned_cols=218 Identities=17% Similarity=0.295 Sum_probs=173.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC---CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK---CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
..|.+.|+|+.|+|+| .+||+|+.|+.|.||.... +...........+..+.....+.+|...|..++|+|++.+|
T Consensus 66 ~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred ccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 3489999999999999 8999999999999999874 11111111223444444555668899999999999999999
Q ss_pred EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021453 104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
++++ |++|.+||..+. +.++.+.+|... |..+.| +|-|+||++-+.|++|+||.+.+...
T Consensus 145 vS~s~DnsViiwn~~tF----------------~~~~vl~~H~s~--VKGvs~-DP~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTF----------------ELLKVLRGHQSL--VKGVSW-DPIGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred EEecccceEEEEccccc----------------eeeeeeeccccc--ccceEE-CCccCeeeeecCCceEEEEEccccee
Confidence 9975 999999999987 899999999977 999999 99999999999999999999654221
Q ss_pred EE----------------------------------------------------EeecCccceEEEEEcCC-----CC--
Q 021453 183 VR----------------------------------------------------LMVGDRHVVNQLEPHPH-----IP-- 203 (312)
Q Consensus 183 ~~----------------------------------------------------~~~~~~~~v~~v~~~p~-----~~-- 203 (312)
.+ .+-+|.+++.++.|+|. .+
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence 11 45689999999999982 11
Q ss_pred ----------eEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 204 ----------MFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 204 ----------~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+|+|+.|++|.||.....+. .....-....+....|++++..|++++.||+|.++.+...
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 578899999999999866653 2232233333455569999999999999999999988654
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.7e-25 Score=182.58 Aligned_cols=218 Identities=17% Similarity=0.226 Sum_probs=175.5
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE-ccCCCeEEEec
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLISYN 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~ 107 (312)
|..-|+++...-++ +.|++++.|-+|++|+...+. .+|...+ ..|.+.|.++++ .++..++|+++
T Consensus 72 HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~------------~~c~sti-r~H~DYVkcla~~ak~~~lvaSgG 137 (735)
T KOG0308|consen 72 HSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN------------TFCMSTI-RTHKDYVKCLAYIAKNNELVASGG 137 (735)
T ss_pred hHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc------------chhHhhh-hcccchheeeeecccCceeEEecC
Confidence 88889999999888 799999999999999998663 2355555 889999999999 67777888875
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
|+.|.+||++++.... ....+. .....+. |+... |.+++. ++.|..+++|+..+.+++||.++++.+..
T Consensus 138 LD~~IflWDin~~~~~l--~~s~n~----~t~~sl~sG~k~s--iYSLA~-N~t~t~ivsGgtek~lr~wDprt~~kimk 208 (735)
T KOG0308|consen 138 LDRKIFLWDINTGTATL--VASFNN----VTVNSLGSGPKDS--IYSLAM-NQTGTIIVSGGTEKDLRLWDPRTCKKIMK 208 (735)
T ss_pred CCccEEEEEccCcchhh--hhhccc----cccccCCCCCccc--eeeeec-CCcceEEEecCcccceEEeccccccceee
Confidence 9999999998762100 000000 1111122 66655 999998 89999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+++|+..|..+..+++|..++++|.||+|++||+..++ +.++..|...+.... .+++=..+.+|+.|+.|..-+++..
T Consensus 209 LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~-~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 209 LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ-SSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe-eCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999999999999999886 577777888775544 3355567899999999999999886
Q ss_pred Ccccee
Q 021453 265 QTLAYR 270 (312)
Q Consensus 265 ~~~~~~ 270 (312)
.+...+
T Consensus 288 ~~~tli 293 (735)
T KOG0308|consen 288 AKSTLI 293 (735)
T ss_pred hhheEe
Confidence 544444
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-22 Score=149.30 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=167.7
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC----CCeE
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELL 103 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l 103 (312)
.|++.|+|.+|+|.| +++++|+.|.+|++..+....+... -...-+..|.+.|..++|..+ +.+|
T Consensus 87 hhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~----------g~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNAT----------GHDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred ccCccEEEEEecCcc-CeEEecCCCceEEEEeccccccccc----------CcceeeeecCCceeeeEEecCCCcCceEE
Confidence 489999999999999 8999999999999987765442111 111122678999999999654 3488
Q ss_pred EEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021453 104 ISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 104 ~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 181 (312)
+++ .|..|++=|...+ +..+.+.+|..- |..+ | +-++-.+++|+.|.+|++||++-..
T Consensus 156 ~s~gagdc~iy~tdc~~g----------------~~~~a~sghtgh--ilal-y-swn~~m~~sgsqdktirfwdlrv~~ 215 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRG----------------QGFHALSGHTGH--ILAL-Y-SWNGAMFASGSQDKTIRFWDLRVNS 215 (350)
T ss_pred EecCCCcceEEEeecCCC----------------CcceeecCCccc--EEEE-E-EecCcEEEccCCCceEEEEeeeccc
Confidence 885 3778888888877 788889999965 7776 3 5678999999999999999999888
Q ss_pred eEEEeec--C-----ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021453 182 LVRLMVG--D-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 182 ~~~~~~~--~-----~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
++..+.. | ...|..++..|.|++|++|-.|..-.+||+++++ +..+..|...+ .+..+++...++++++.|
T Consensus 216 ~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi-r~vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 216 CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI-RCVRFSPGAHYLLTCSYD 294 (350)
T ss_pred eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce-eEEEeCCCceEEEEeccc
Confidence 8877742 2 2578999999999999999999999999999988 46777777766 667789999999999999
Q ss_pred ceEEEEEeccc
Q 021453 254 VIMHVLRLQRR 264 (312)
Q Consensus 254 ~~i~i~~~~~~ 264 (312)
..|++-|++..
T Consensus 295 ~~ikltdlqgd 305 (350)
T KOG0641|consen 295 MKIKLTDLQGD 305 (350)
T ss_pred ceEEEeecccc
Confidence 99999998753
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=8e-24 Score=172.56 Aligned_cols=264 Identities=12% Similarity=0.106 Sum_probs=180.9
Q ss_pred CeeecccCccc-eeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021453 1 MWQFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
|++||++-... .+.|+.. +|.-...|.++.|++++ ..|++.+.....+++|-...++......++-+..+.
T Consensus 191 v~~wDf~gMdas~~~fr~l-------~P~E~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~ 262 (641)
T KOG0772|consen 191 VKFWDFQGMDASMRSFRQL-------QPCETHQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMY 262 (641)
T ss_pred EEEEecccccccchhhhcc-------CcccccccceeeecCCC-CeEEEEecCcceeEEccCCceeeeeeccchhhhhhh
Confidence 57899874331 1122221 12235689999999999 677777777899999988777766666555554432
Q ss_pred ccccccCCCccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc---CCceeeEEE
Q 021453 80 PRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTVKGVN 154 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~ 154 (312)
..++|...+++.+|+|..+ .+.+ +.||++++||+...+ +..+.++... ...+++.++
T Consensus 263 ---nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k---------------~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 263 ---NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK---------------SQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred ---ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch---------------hheeEEeeccCCCcccCceeee
Confidence 2278999999999999885 4455 569999999998752 3344443221 113488999
Q ss_pred EecCCCCEEEEeccCceEEEEeccCC--ee-EEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCC
Q 021453 155 FFGPNDEYVMSGSDCGHLFIWKKKGG--KL-VRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPL 227 (312)
Q Consensus 155 ~~s~~~~~l~~~~~dg~v~iwd~~~~--~~-~~~~~~~~~--~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~ 227 (312)
| ++++++||+|+.||.|.+|+.... .+ ...-++|.. .|++++||++|++|++-+.|+++++||++..+ +...
T Consensus 325 ~-nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 325 W-NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred c-CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence 9 999999999999999999997532 22 233357876 89999999999999999999999999998754 3332
Q ss_pred CCChh-hhhhhhccCCCCceeEEecCC------ceEEEEEecccCc----------cceeEeecCCCccCCCCCCCeEEE
Q 021453 228 PDNAE-KIMKANKQGREDHSRITLTPD------VIMHVLRLQRRQT----------LAYRERRYNAADFESDEEEGETYL 290 (312)
Q Consensus 228 ~~~~~-~~~~~~~~~~~~~~l~s~~~d------~~i~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~ 290 (312)
.+-.. -..+..+++++..++++|+.- +.+.+++-.+... .+...+-|....+..+..+|.+++
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 22221 123445588999999997753 6788877433211 111244555556666656666666
Q ss_pred e
Q 021453 291 L 291 (312)
Q Consensus 291 ~ 291 (312)
+
T Consensus 484 y 484 (641)
T KOG0772|consen 484 Y 484 (641)
T ss_pred E
Confidence 5
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.6e-24 Score=177.85 Aligned_cols=216 Identities=16% Similarity=0.248 Sum_probs=178.8
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|+|||..+.+..+.+... |..+|-+++|+. ..+.+|+.|+.|..+|++..+. .
T Consensus 241 v~iwD~~~~k~~~~~~~~----------h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~--------------~ 293 (484)
T KOG0305|consen 241 VQIWDVKEQKKTRTLRGS----------HASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQH--------------V 293 (484)
T ss_pred EEEEehhhccccccccCC----------cCceeEEEeccC---ceEEEecCCCcEEEEEEecchh--------------h
Confidence 467777765544333321 788999999993 6899999999999999998762 2
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP- 158 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~- 158 (312)
...+.+|...|..++|++++.++|++ .|+.+.|||.... .+...+..|... |..++| +|
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----------------~p~~~~~~H~aA--VKA~aw-cP~ 354 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----------------EPKFTFTEHTAA--VKALAW-CPW 354 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc----------------cccEEEecccee--eeEeee-CCC
Confidence 22348899999999999999999997 6999999999666 688889999977 999999 56
Q ss_pred CCCEEEEec--cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCC-CCCCCCChhh
Q 021453 159 NDEYVMSGS--DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPDNAEK 233 (312)
Q Consensus 159 ~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~--~d~~i~iwd~~~~~-~~~~~~~~~~ 233 (312)
....||+|+ .|+.|++||..+++.+..+.. ...|..+.|++..+.|+++. .+..|.||+..+.. ...+.+|...
T Consensus 355 q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R 433 (484)
T KOG0305|consen 355 QSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR 433 (484)
T ss_pred ccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce
Confidence 467788765 599999999999999888764 46899999999998876654 67799999998876 4778889999
Q ss_pred hhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 234 IMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
++.++ +++++..+++++.|.++++|++-..
T Consensus 434 Vl~la-~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 434 VLYLA-LSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEE-ECCCCCEEEEecccCcEEeccccCC
Confidence 87665 7899999999999999999998664
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.5e-23 Score=160.04 Aligned_cols=201 Identities=15% Similarity=0.183 Sum_probs=156.4
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eE
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LL 103 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l 103 (312)
++.|.++|++++.+- .++|+|+.|.+|+|||+++.. . ...+..|.+.|+++.|.+.-. .|
T Consensus 39 ~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~--------------q-lg~ll~HagsitaL~F~~~~S~shL 100 (362)
T KOG0294|consen 39 FSAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRK--------------Q-LGILLSHAGSITALKFYPPLSKSHL 100 (362)
T ss_pred ccccccceeEEEecc---eeEeccCCCCcEEEEeccchh--------------h-hcceeccccceEEEEecCCcchhhe
Confidence 356999999999964 699999999999999999765 2 222267899999999999874 55
Q ss_pred EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021453 104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
+++ .||.|.+|+.... .++..+++|... |+.++. +|.+++.++.+.|+.++.|++-.|+.
T Consensus 101 lS~sdDG~i~iw~~~~W----------------~~~~slK~H~~~--Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 101 LSGSDDGHIIIWRVGSW----------------ELLKSLKAHKGQ--VTDLSI-HPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred eeecCCCcEEEEEcCCe----------------EEeeeecccccc--cceeEe-cCCCceEEEEcCCceeeeehhhcCcc
Confidence 555 7999999999887 799999999987 999999 89999999999999999999877654
Q ss_pred EEEeecC---------------------------------------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 183 VRLMVGD---------------------------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 183 ~~~~~~~---------------------------------------~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
-..++.. ...+.++.|. ++..|++|+.|+.|++||.....
T Consensus 162 a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~ 240 (362)
T KOG0294|consen 162 AFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDT 240 (362)
T ss_pred ceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCc
Confidence 2222110 0112233332 34567888889999999988755
Q ss_pred -CCCCCCChhhhhhhhcc-CCCCceeEEecCCceEEEEEeccc
Q 021453 224 -FPPLPDNAEKIMKANKQ-GREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 224 -~~~~~~~~~~~~~~~~~-~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+..+.+|.+.+-..... .+++.+|++.+.||.|+|||++..
T Consensus 241 ~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 45677888887555433 346789999999999999998765
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=7.3e-24 Score=172.80 Aligned_cols=226 Identities=16% Similarity=0.173 Sum_probs=161.6
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
++|...|.++++.|.| ..|++|+.|.+|++||+..-.. ..+. .+.+.......|.+++|++.|. +|+.
T Consensus 164 ~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMda--------s~~~--fr~l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDA--------SMRS--FRQLQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred cCCceEEEEeeecCCC-ceeeeccccceEEEEecccccc--------cchh--hhccCcccccccceeeecCCCCeEEEE
Confidence 5789999999999999 8999999999999999985431 1111 2233334456799999999997 4555
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEE
Q 021453 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVR 184 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~ 184 (312)
+...+.+|+|.......... .. -+-..-+..-+||... +++.+|++.+.+.+++++.||++++||+...+ .+.
T Consensus 233 sg~aqakl~DRdG~~~~e~~--KG--DQYI~Dm~nTKGHia~--lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFS--KG--DQYIRDMYNTKGHIAE--LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred ecCcceeEEccCCceeeeee--cc--chhhhhhhccCCceee--eeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 67889999997654100000 00 0000112233577766 99999944456788999999999999987543 333
Q ss_pred Eee-----cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC----CCCChh-hhhhhhccCCCCceeEEecCCc
Q 021453 185 LMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----LPDNAE-KIMKANKQGREDHSRITLTPDV 254 (312)
Q Consensus 185 ~~~-----~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~l~s~~~d~ 254 (312)
.++ +..-+++.++|+|+++.+|+|+.||.|.+|+..+..... -..|.. .-+++..++.++++|++=+.|.
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 333 223478999999999999999999999999986654322 123443 2357777999999999999999
Q ss_pred eEEEEEecccCccce
Q 021453 255 IMHVLRLQRRQTLAY 269 (312)
Q Consensus 255 ~i~i~~~~~~~~~~~ 269 (312)
.+++||+++.++...
T Consensus 387 tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLN 401 (641)
T ss_pred ceeeeeccccccchh
Confidence 999999998765543
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.4e-22 Score=154.80 Aligned_cols=233 Identities=14% Similarity=0.160 Sum_probs=184.0
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN- 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~- 107 (312)
...|+++.|+++| ..+++++.|.++++||..+++. ...+ ..+...+..++|..... .+.++.
T Consensus 14 ~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~--------------~~ti-~skkyG~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 14 NGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQ--------------VKTI-NSKKYGVDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred CCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCce--------------eeEe-ecccccccEEEEecCCceEEEccCC
Confidence 5679999999999 7888999999999999998873 2222 45566778888877665 455543
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|.+|+..++.++ +.++.|.||... |.+++. +|.+..+++++.|++|++||++..++...+
T Consensus 78 ~d~tIryLsl~dN----------------kylRYF~GH~~~--V~sL~~-sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 78 EDDTIRYLSLHDN----------------KYLRYFPGHKKR--VNSLSV-SPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred CCCceEEEEeecC----------------ceEEEcCCCCce--EEEEEe-cCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 999999999988 899999999976 999998 999999999999999999999988877666
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC---CC--CCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF---PP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.....+ .++|.|+|-++|++.....|++||++.... .+ +......-+....+++++..++-.+..+.+++.|-
T Consensus 139 ~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 139 NLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred ecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence 543333 488999999999999878999999987532 22 22233444566678899999998888888888875
Q ss_pred cccC-------------ccceeEeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021453 262 QRRQ-------------TLAYRERRYNAADFESDEEEGETYLLGFSDSDAS 299 (312)
Q Consensus 262 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 299 (312)
-.+. ...-..+.|++..+.++.++|++.+|+.+.+..-
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 3322 1122367789999999999999999999777643
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-22 Score=156.27 Aligned_cols=217 Identities=12% Similarity=0.162 Sum_probs=161.0
Q ss_pred ceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCcc
Q 021453 11 ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH 90 (312)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (312)
..+.+.+.+.+-.+.++||...|++++.+|-+ ..+++++.|++|++||++..+ |...+ . ...
T Consensus 81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~--------------cqg~l-~--~~~ 142 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKK--------------CQGLL-N--LSG 142 (311)
T ss_pred ceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCC--------------CceEE-e--cCC
Confidence 34566666666667779999999999999988 899999999999999999776 22222 1 222
Q ss_pred EEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc-cCCceeeEEEEecCCCCEEEEecc
Q 021453 91 ITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSD 168 (312)
Q Consensus 91 i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~s~~~~~l~~~~~ 168 (312)
-..+||.|+|.++|.+. .+.|++||+++..+ .+-.++.-. ......+.+.| +|+|++|+.++.
T Consensus 143 ~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk--------------gPF~tf~i~~~~~~ew~~l~F-S~dGK~iLlsT~ 207 (311)
T KOG1446|consen 143 RPIAAFDPEGLIFALANGSELIKLYDLRSFDK--------------GPFTTFSITDNDEAEWTDLEF-SPDGKSILLSTN 207 (311)
T ss_pred CcceeECCCCcEEEEecCCCeEEEEEecccCC--------------CCceeEccCCCCccceeeeEE-cCCCCEEEEEeC
Confidence 34679999999999985 44999999987521 122333222 11133899999 999999999999
Q ss_pred CceEEEEeccCCeeEEEeecCccc---eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCC
Q 021453 169 CGHLFIWKKKGGKLVRLMVGDRHV---VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGRED 244 (312)
Q Consensus 169 dg~v~iwd~~~~~~~~~~~~~~~~---v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 244 (312)
.+.+++.|.-+|..+..+.++... ..+.+|+|+++++++|+.||+|.+|+++++.. ..+.+.......+..+.|
T Consensus 208 ~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-- 285 (311)
T KOG1446|consen 208 ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-- 285 (311)
T ss_pred CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC--
Confidence 999999999999998888776532 25788999999999999999999999998874 444432222223333443
Q ss_pred ceeEEecCCceEEEEEec
Q 021453 245 HSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 245 ~~l~s~~~d~~i~i~~~~ 262 (312)
.+.+-.+.+..+-+|-..
T Consensus 286 ~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 286 RYAMFVSASSNLVFWLPD 303 (311)
T ss_pred ceeeeeecCceEEEEecc
Confidence 566667778888888543
No 84
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-24 Score=184.22 Aligned_cols=206 Identities=19% Similarity=0.224 Sum_probs=161.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe-cCC
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDE 109 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~ 109 (312)
.+..++|+....++|||++..|.|.+||+...- +. .....+..|...+.++.|++.. .+|++| .||
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------rn-k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg 156 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----------RN-KLLTVFNEHERSANKLDFHSTEPNILISGSQDG 156 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc-----------cc-hhhhHhhhhccceeeeeeccCCccEEEecCCCc
Confidence 456788987666899999999999999998521 00 2223347899999999999976 478887 599
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEEEeec
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVG 188 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~ 188 (312)
.|++||++.. +...++.+.... |++|.|....+.+++++.+.|.+.+||++.. ++...+.+
T Consensus 157 ~vK~~DlR~~----------------~S~~t~~~nSES--iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 157 TVKCWDLRSK----------------KSKSTFRSNSES--IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred eEEEEeeecc----------------cccccccccchh--hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 9999999987 667777776644 9999994445788999999999999999864 56677889
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC-CCChhhhhhhhccCCCCceeE-Eec--CCceEEEEEeccc
Q 021453 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRI-TLT--PDVIMHVLRLQRR 264 (312)
Q Consensus 189 ~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-s~~--~d~~i~i~~~~~~ 264 (312)
|.++|.++.|+|++.+|||||.|++|+||+..+.+.... ..++...+....|-|+..+.+ +.+ .|..|+|||+++.
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 999999999999999999999999999999987664322 234555566777777655444 333 4789999999987
Q ss_pred Ccc
Q 021453 265 QTL 267 (312)
Q Consensus 265 ~~~ 267 (312)
-.+
T Consensus 299 YIP 301 (839)
T KOG0269|consen 299 YIP 301 (839)
T ss_pred ccc
Confidence 544
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=180.67 Aligned_cols=203 Identities=12% Similarity=0.148 Sum_probs=158.1
Q ss_pred CCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-C
Q 021453 23 NSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-E 101 (312)
Q Consensus 23 ~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 101 (312)
.+.+.||.+.|.++.|+.++ +|++++.|.+||+|++...+++ .. ..|.+-|+|++|+|-. +
T Consensus 362 ~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL--------------~~--F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 362 FCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECL--------------KV--FSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred hhhhhccchhheecccccCC--eeEeccccccEEeecCCCccee--------------eE--EecCCeeEEEEecccCCC
Confidence 34446999999999999975 9999999999999999988743 22 4689999999999955 6
Q ss_pred eEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021453 102 LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 180 (312)
Q Consensus 102 ~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~ 180 (312)
++++|+ |+.|+||++... .+.....-. ..|++++| .|+|++.+.|+.+|.+++|+....
T Consensus 424 yFiSGSLD~KvRiWsI~d~-----------------~Vv~W~Dl~--~lITAvcy-~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDK-----------------KVVDWNDLR--DLITAVCY-SPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred cEeecccccceEEeecCcC-----------------eeEeehhhh--hhheeEEe-ccCCceEEEEEeccEEEEEEccCC
Confidence 999986 999999999764 322232233 34999999 999999999999999999999887
Q ss_pred eeEEEeec--C------ccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-CCCCCChhhh-hhhhccCCCCceeEE
Q 021453 181 KLVRLMVG--D------RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-PPLPDNAEKI-MKANKQGREDHSRIT 249 (312)
Q Consensus 181 ~~~~~~~~--~------~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~s 249 (312)
+....+.- | ...|+.+.|.|...- ++..+.|..|||+|.+...+ ..+.+..+.- ...+.+..++.++++
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 77654431 1 127999999987664 77778899999999976653 4444333221 123445669999999
Q ss_pred ecCCceEEEEEecc
Q 021453 250 LTPDVIMHVLRLQR 263 (312)
Q Consensus 250 ~~~d~~i~i~~~~~ 263 (312)
++.|..+++|++..
T Consensus 564 ~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDS 577 (712)
T ss_pred eecCceEEEEeCCC
Confidence 99999999999743
No 86
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=164.11 Aligned_cols=166 Identities=16% Similarity=0.289 Sum_probs=136.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
.+|...=+++.|||...-.|++|.--+.|++|...++.+. .-...+.+|...|-.++|||... +|++
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~------------vd~~Pf~gH~~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK------------VDQRPFTGHTKSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCcee------------ecCccccccccchhhhccCCccCceEEe
Confidence 5788999999999954347899988899999999987753 12222367999999999999876 8888
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC---Ce
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GK 181 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---~~ 181 (312)
|+ |+.|+|||++.+.. +.....+.|... |.-++| +....+|++|+.||+++|||+++ ++
T Consensus 276 cS~DgsIrIWDiRs~~~--------------~~~~~~kAh~sD--VNVISW-nr~~~lLasG~DdGt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPK--------------KAAVSTKAHNSD--VNVISW-NRREPLLASGGDDGTLSIWDLRQFKSGQ 338 (440)
T ss_pred eecCceEEEEEecCCCc--------------cceeEeeccCCc--eeeEEc-cCCcceeeecCCCceEEEEEhhhccCCC
Confidence 75 99999999998621 233334677766 999999 77777999999999999999874 67
Q ss_pred eEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCC
Q 021453 182 LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMP 221 (312)
Q Consensus 182 ~~~~~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~ 221 (312)
++..++-|..+|+++.|+|.... |++++.|.+|.+||+..
T Consensus 339 pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 339 PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 89999999999999999997654 88888999999999864
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=4.1e-23 Score=165.05 Aligned_cols=200 Identities=16% Similarity=0.238 Sum_probs=162.5
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|..+|+.+..+|.| .+|++++.|++..+.|++++.+.. ...- ....-.+++.+|+|||.++.++
T Consensus 301 ~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt------------~vs~-~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLT------------VVSD-ETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred cccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEE------------EEee-ccccceeEEeeEcCCceEEeccC
Confidence 388999999999999 899999999999999999987431 1111 1223458999999999999998
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|+.|++||+.++ .....|.+|..+ |..++| +.+|.||+++++|+.|++||++.-+...++
T Consensus 367 ~d~~vkiwdlks~----------------~~~a~Fpght~~--vk~i~F-sENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQ----------------TNVAKFPGHTGP--VKAISF-SENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred CCceEEEEEcCCc----------------cccccCCCCCCc--eeEEEe-ccCceEEEEEecCCeEEEEEehhhccccee
Confidence 5999999999987 678889999977 999999 999999999999999999999988877777
Q ss_pred ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC---CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 187 VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 187 ~~~~-~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.... ..|.++.|.+.|.+|+.++.|=+|++++-.+.. +..+..|. .....+++.....++++++.|..++++.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s-g~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS-GLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc-cccceeeecccceEEeeccchhheEEeec
Confidence 5332 479999999999999999888888888755544 34444444 23455666677889999999998888753
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-23 Score=161.66 Aligned_cols=249 Identities=14% Similarity=0.229 Sum_probs=189.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-||+.+|..++-.... .++.+++.|.+.+||.++++. |...+ .+|.+.|.+++|++.+.+++++
T Consensus 145 ~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~--------------CL~~Y-~GH~GSVNsikfh~s~~L~lTa 208 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGA--------------CLATY-TGHTGSVNSIKFHNSGLLLLTA 208 (481)
T ss_pred cccccceeeehhhcCC-cceeecccccceeEEeecccc--------------ceeee-cccccceeeEEeccccceEEEc
Confidence 5899999999998866 599999999999999999998 55555 8999999999999999998886
Q ss_pred -cCCcEEEEEc------CCCcCCCCCc------------------CCcccccCCCCCceEecccCCceeeEEEEecCCCC
Q 021453 107 -NDELVYLFEK------NMGLGPSPLS------------------LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 161 (312)
Q Consensus 107 -~d~~i~iwd~------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~ 161 (312)
.|++-.||.. .....+...+ .......-..++..+.+|... |.+..| -..|+
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v--V~a~dW-L~gg~ 285 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV--VSACDW-LAGGQ 285 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc--eEehhh-hcCcc
Confidence 5999999983 2221111110 000001112355677888866 889998 67899
Q ss_pred EEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC--CCCCCCCChhhhhhhhc
Q 021453 162 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANK 239 (312)
Q Consensus 162 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~ 239 (312)
.+++++.|.+-.+||+.+++++..+.+|....+.++-+|..+++++.+.|-+.++||++.. .+..|.+|...+....
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v- 364 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV- 364 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE-
Confidence 9999999999999999999999999999999999999999999999999999999999843 2467888988875443
Q ss_pred cCCCCceeEEecCCceEEEEEecccCcccee--Ee--------ecCCCccCCCCCCCeEEEeecCCC
Q 021453 240 QGREDHSRITLTPDVIMHVLRLQRRQTLAYR--ER--------RYNAADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 240 ~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~v~~~~~~~~ 296 (312)
+. .+..+++++.|.++++|++++...+.-. .. +....-++...|...|-++|++..
T Consensus 365 F~-~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 365 FN-TDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred Ee-cCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 33 3457899999999999999875433222 11 111223334455666777777443
No 89
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-23 Score=155.13 Aligned_cols=235 Identities=12% Similarity=0.157 Sum_probs=177.6
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEEE
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLIS 105 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s 105 (312)
.|...|.++...-.| .+|||+++|++|+|+..+..... ....-+.+|.++|..++|.. .|.+||+
T Consensus 9 ~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s------------~ll~~L~Gh~GPVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQS------------KLLAELTGHSGPVWKVAWAHPKFGTILAS 75 (299)
T ss_pred hhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCc------------eeeeEecCCCCCeeEEeecccccCcEeeE
Confidence 388889998888888 89999999999999999865410 11222389999999999987 7889999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCC-e
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG-K 181 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~-~ 181 (312)
++ ||+|.||.-+++ .......+..|... |++++| .|. |-.|++++.||.|.|.+.+.. .
T Consensus 76 csYDgkVIiWke~~g--------------~w~k~~e~~~h~~S--VNsV~w-apheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENG--------------RWTKAYEHAAHSAS--VNSVAW-APHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred eecCceEEEEecCCC--------------chhhhhhhhhhccc--ceeecc-cccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 86 999999998776 22445566778866 999999 675 567899999999999987754 2
Q ss_pred --eEEEeecCccceEEEEEcCC---C-----------CeEEEEeCCCcEEEccCCCCC---CCCCCCChhhhhhhhccCC
Q 021453 182 --LVRLMVGDRHVVNQLEPHPH---I-----------PMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGR 242 (312)
Q Consensus 182 --~~~~~~~~~~~v~~v~~~p~---~-----------~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~ 242 (312)
..+....|.-.|++++|.|. | +.|++|+.|..|+||+..... -.++.+|...+...+|.+.
T Consensus 139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 23445689999999999996 4 459999999999999998864 2457888888866654333
Q ss_pred ---CCceeEEecCCceEEEEEecccC------------cccee-EeecCCCccCCCCCCCeEEEee
Q 021453 243 ---EDHSRITLTPDVIMHVLRLQRRQ------------TLAYR-ERRYNAADFESDEEEGETYLLG 292 (312)
Q Consensus 243 ---~~~~l~s~~~d~~i~i~~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 292 (312)
....+++++.|+.+.||..+... ...|. .++..+..|+...++..|.++-
T Consensus 219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 25688999999999999865321 11222 4555666666665665566653
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=4.4e-23 Score=178.34 Aligned_cols=230 Identities=17% Similarity=0.281 Sum_probs=189.3
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~- 107 (312)
|...+.+..|+. ..+++++.|++|++|+..++.. ...-+.+|.+.|.++++..-+.+|++++
T Consensus 207 ~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~--------------i~~~l~GH~g~V~~l~~~~~~~~lvsgS~ 269 (537)
T KOG0274|consen 207 DDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYL--------------ILTRLVGHFGGVWGLAFPSGGDKLVSGST 269 (537)
T ss_pred Ccchhhhheeec---CeEEecCCCceeEEeecccceE--------------EEeeccCCCCCceeEEEecCCCEEEEEec
Confidence 456788888883 5899999999999999998873 3332389999999999988667889885
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
|.++++||..++ .+...+.+|... +.++.. ....+++|+.|.+|++|++.+++.+..+.
T Consensus 270 D~t~rvWd~~sg----------------~C~~~l~gh~st--v~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~l~l~~ 328 (537)
T KOG0274|consen 270 DKTERVWDCSTG----------------ECTHSLQGHTSS--VRCLTI---DPFLLVSGSRDNTVKVWDVTNGACLNLLR 328 (537)
T ss_pred CCcEEeEecCCC----------------cEEEEecCCCce--EEEEEc---cCceEeeccCCceEEEEeccCcceEEEec
Confidence 999999999998 899999999966 888765 56778889999999999999999999999
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021453 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 188 ~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
+|.++|.++..+ +.++++|+.|++|++||+.+++ +..+.+|...+.... .... ..+++++.|+.|++||+.+...
T Consensus 329 ~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~-~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 329 GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI-VDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE-ecCc-ceEEeeeeccceEeecCCchhh
Confidence 999999999996 8899999999999999999887 588889999886653 2222 7999999999999999987721
Q ss_pred ccee---------EeecCCCccCCCCCCCeEEEeecCCCCCCC
Q 021453 267 LAYR---------ERRYNAADFESDEEEGETYLLGFSDSDASS 300 (312)
Q Consensus 267 ~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 300 (312)
.+.. ........+.+..-++.|.+||..+++...
T Consensus 405 c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 405 CIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred hhhhhcCCcccccccccccceeEeccccccEEEeecccCceee
Confidence 1111 223345666777788889999988876544
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=2.9e-22 Score=150.94 Aligned_cols=201 Identities=11% Similarity=0.101 Sum_probs=169.4
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
||..+++.+.++.+| .+|.+++.|.+..+|-..+++. .-.. .+|.+.|+++...-+.+.++++
T Consensus 8 GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGer--------------lGty-~GHtGavW~~Did~~s~~liTGS 71 (327)
T KOG0643|consen 8 GHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGER--------------LGTY-DGHTGAVWCCDIDWDSKHLITGS 71 (327)
T ss_pred cCccccceEEecCCC-cEEEEecCCCCceEEEecCCce--------------eeee-cCCCceEEEEEecCCcceeeecc
Confidence 699999999999999 7999999999999999877762 2222 8999999999999999999997
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-----CceEEEEecc---
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKK--- 178 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-----dg~v~iwd~~--- 178 (312)
.|.++++||++++ +.+..++.. .+|..+.| +++|++++...+ .+.|.++|++
T Consensus 72 AD~t~kLWDv~tG----------------k~la~~k~~---~~Vk~~~F-~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 72 ADQTAKLWDVETG----------------KQLATWKTN---SPVKRVDF-SFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ccceeEEEEcCCC----------------cEEEEeecC---CeeEEEee-ccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 5999999999998 676666533 34999999 999999887764 4679999988
Q ss_pred ----CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecC
Q 021453 179 ----GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTP 252 (312)
Q Consensus 179 ----~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 252 (312)
..+++..+..+...++.+-|.|-+..+++|..||.|..||++++. +.....|...+ .....+++..++++++.
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I-nd~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI-NDLQFSRDRTYFITGSK 210 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc-ccccccCCcceEEeccc
Confidence 456677888888999999999999999999999999999999875 24444566644 56668889999999999
Q ss_pred CceEEEEEecccC
Q 021453 253 DVIMHVLRLQRRQ 265 (312)
Q Consensus 253 d~~i~i~~~~~~~ 265 (312)
|.+-++||+..-.
T Consensus 211 Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 211 DTTAKLVDVRTLE 223 (327)
T ss_pred Cccceeeecccee
Confidence 9999999987654
No 92
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.6e-23 Score=158.71 Aligned_cols=215 Identities=16% Similarity=0.234 Sum_probs=160.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc--ccccccCCCccEEEEEEccCCC-eE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--PRHLIGKNNIHITGLAYSNTSE-LL 103 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l 103 (312)
..|.+.|+++...+..++++++|+.||.|.+||++....... ..--....| .+.-..+|...|.++.|-|-.. ++
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 459999999999998879999999999999999985431100 000001112 1222367899999999999776 66
Q ss_pred EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC---CCCEEEEeccCceEEEEeccC
Q 021453 104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP---NDEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~---~~~~l~~~~~dg~v~iwd~~~ 179 (312)
.+++ |.++++||..+- +....|+- . ..|.+-++ +| ...++++|..+-.|++.|+.+
T Consensus 118 tssSFDhtlKVWDtnTl----------------Q~a~~F~m-e--~~VYsham-Sp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTL----------------QEAVDFKM-E--GKVYSHAM-SPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred ecccccceEEEeecccc----------------eeeEEeec-C--ceeehhhc-ChhhhcceEEEEecCCCcEEEEeccC
Confidence 6665 999999999875 34444432 2 23666666 55 355788999999999999999
Q ss_pred CeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCC--CCCCC--------------CCChhhhhhhhccCC
Q 021453 180 GKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT--DFPPL--------------PDNAEKIMKANKQGR 242 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~--~~~~~--------------~~~~~~~~~~~~~~~ 242 (312)
|.....+.+|.+.|.+|.|+|...+ |++|+.||.||+||++.. +...+ +.|...+ .-.++..
T Consensus 178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv-ngla~tS 256 (397)
T KOG4283|consen 178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV-NGLAWTS 256 (397)
T ss_pred CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee-eeeeecc
Confidence 9999999999999999999999988 899999999999998743 22211 1233333 3344677
Q ss_pred CCceeEEecCCceEEEEEeccc
Q 021453 243 EDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 243 ~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
++.++.+.+.|..+++|+...+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred cchhhhhccCccceEEeecccC
Confidence 8899999999999999997654
No 93
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=9e-25 Score=184.51 Aligned_cols=192 Identities=17% Similarity=0.304 Sum_probs=161.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-+|..+|.++.|++.. .+|++|+.+|+|++||+...+ ....+ .+|...+.++.|+|-+.+.+++
T Consensus 67 ~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--------------~vrtL-tgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--------------IVRTL-TGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred eccCCcceeeecCcch-hhhcccccCCceeeeehhhhh--------------hhhhh-hccccCcceeeeccceEEeccc
Confidence 4799999999999988 899999999999999999876 23333 8899999999999999999887
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+ |..+.+||.+.. .+...+.+|... +..+.| +|+|++++.+++|..++|||...|+.+..
T Consensus 131 Stdtd~~iwD~Rk~----------------Gc~~~~~s~~~v--v~~l~l-sP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 131 STDTDLKIWDIRKK----------------GCSHTYKSHTRV--VDVLRL-SPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred cccccceehhhhcc----------------CceeeecCCcce--eEEEee-cCCCceeeccCCcceeeeecccccccccc
Confidence 4 999999999865 588899998865 899999 99999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCc
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDV 254 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 254 (312)
|+.|.+.+..+.|+|..-.+++|+.|++|++||+++.+. .........+ ....+.+++..+.+|....
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v-~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGV-RSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCc-eeeeecCCceeeecCchhh
Confidence 999999999999999999999999999999999997653 2222223333 3444556655555555443
No 94
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.1e-24 Score=182.33 Aligned_cols=201 Identities=18% Similarity=0.274 Sum_probs=174.6
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
|...|.++..-... +.+++|+.|..+-+|.+..-. +... +.+|..+|.++.|++...+|+++ .
T Consensus 27 hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~--------------~i~S-~~~hespIeSl~f~~~E~Llaagsa 90 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPN--------------AITS-LTGHESPIESLTFDTSERLLAAGSA 90 (825)
T ss_pred hhhhhceeeeeccc-eeeccCCCceeeccccccCCc--------------hhhe-eeccCCcceeeecCcchhhhccccc
Confidence 66778888875555 899999999999999987543 1111 38999999999999998888887 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
+|+|++||++.. +.++++.+|... +.++.| +|-+.|.+.|+.|+.+++||.+..-+...+.
T Consensus 91 sgtiK~wDleeA----------------k~vrtLtgh~~~--~~sv~f-~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 91 SGTIKVWDLEEA----------------KIVRTLTGHLLN--ITSVDF-HPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred CCceeeeehhhh----------------hhhhhhhccccC--cceeee-ccceEEeccccccccceehhhhccCceeeec
Confidence 999999999987 788999999976 999999 9999999999999999999999888999999
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021453 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 188 ~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
+|...|..+.|+|+|++++.++.|.+++|||+..+++ ..|..|...+.... +++..-++.+|+.|.++++||+.+..
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE-FHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc-cCchhhhhccCCCCceeeeeccceeE
Confidence 9999999999999999999999999999999988885 66777777775544 77777889999999999999988653
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=5e-23 Score=154.52 Aligned_cols=206 Identities=14% Similarity=0.154 Sum_probs=159.1
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||.+.|-.++|+|..+.+|++++.|.+|++||++.+++. ..+ .. ...-.-+.|+|+|++++.+
T Consensus 61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~--------------~~i-~~-~~eni~i~wsp~g~~~~~~ 124 (313)
T KOG1407|consen 61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT--------------ARI-ET-KGENINITWSPDGEYIAVG 124 (313)
T ss_pred cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE--------------EEe-ec-cCcceEEEEcCCCCEEEEe
Confidence 5899999999999998899999999999999999998742 221 22 2223467899999988887
Q ss_pred -cCCcEEEEEcCCCcCCCCC-------------------------cCCcccccCCCCCceEecccCCceeeEEEEecCCC
Q 021453 107 -NDELVYLFEKNMGLGPSPL-------------------------SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 160 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~ 160 (312)
.|..|...|.++....... .+.+-.....++++.++.|... ..|+.| +|+|
T Consensus 125 ~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn--CicI~f-~p~G 201 (313)
T KOG1407|consen 125 NKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN--CICIEF-DPDG 201 (313)
T ss_pred cCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc--eEEEEE-CCCC
Confidence 5889999998765411111 1111113455778888899866 889999 9999
Q ss_pred CEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhc
Q 021453 161 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANK 239 (312)
Q Consensus 161 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~ 239 (312)
+++|+|+.|..+.+||+..--+++.+..+.-+|..+.|+-+|++||++|+|..|-|=+.+++.. ..++ +..+..+ ..
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~t-VA 279 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFT-VA 279 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCcee-EE
Confidence 9999999999999999998888999988999999999999999999999999999999988863 3332 3444433 34
Q ss_pred cCCCCceeEEecCC
Q 021453 240 QGREDHSRITLTPD 253 (312)
Q Consensus 240 ~~~~~~~l~s~~~d 253 (312)
|+|...+|+-...|
T Consensus 280 WHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 280 WHPKRPLLAYACDD 293 (313)
T ss_pred ecCCCceeeEEecC
Confidence 77766666554444
No 96
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-22 Score=162.71 Aligned_cols=205 Identities=14% Similarity=0.181 Sum_probs=157.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s 105 (312)
.||+..|.+++|+..-.++||+|+.|.+|++||+.+++ +. ..+..|...|.+++|+|.. .+|++
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--------------p~-~s~~~~~k~Vq~l~wh~~~p~~LLs 304 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--------------PK-SSITHHGKKVQTLEWHPYEPSVLLS 304 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--------------cc-eehhhcCCceeEEEecCCCceEEEe
Confidence 47999999999999877899999999999999999997 22 2336789999999999976 57888
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeE
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLV 183 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~ 183 (312)
|+ |++|.+.|.+... ..-..++ ..+. |-.++|.......+++++.||+|+-+|+|.. +++
T Consensus 305 Gs~D~~V~l~D~R~~~---------------~s~~~wk-~~g~--VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 305 GSYDGTVALKDCRDPS---------------NSGKEWK-FDGE--VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV 366 (463)
T ss_pred ccccceEEeeeccCcc---------------ccCceEE-eccc--eEEEEecCCCceeEEEecCCceEEeeecCCCCCce
Confidence 75 9999999998531 1222232 2223 8889994334567888899999999999865 899
Q ss_pred EEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCCCChhhh--hhhhccCCC-CceeEEecCCceEEEE
Q 021453 184 RLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEKI--MKANKQGRE-DHSRITLTPDVIMHVL 259 (312)
Q Consensus 184 ~~~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~l~s~~~d~~i~i~ 259 (312)
.++++|.+.|.++++++.-+. ++|++.|++|++|++..........|...+ +.+....++ ...++.++..+.+++|
T Consensus 367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEe
Confidence 999999999999999987765 889999999999998876654444443322 233333343 4566667777789999
Q ss_pred Eeccc
Q 021453 260 RLQRR 264 (312)
Q Consensus 260 ~~~~~ 264 (312)
|+...
T Consensus 447 d~~~~ 451 (463)
T KOG0270|consen 447 DIFTN 451 (463)
T ss_pred ecccC
Confidence 97655
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.1e-23 Score=166.73 Aligned_cols=198 Identities=12% Similarity=0.190 Sum_probs=159.0
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~ 106 (312)
+|..+|..+.|+|++...|++|+.|+.+++||+.+.. . ..-+.+|.+.|.+.+|+|... ++++|
T Consensus 108 ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------------v-~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 108 AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------------V-QAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------------E-EEEecCCcceeEeeccccCCCeEEEec
Confidence 4889999999999987899999999999999999875 2 223389999999999999764 78887
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEE
Q 021453 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVR 184 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~ 184 (312)
+ ||.|++||++.. .....--.|..+ |..+.+ -|.|..+++++ ...|++||+-+| +.+.
T Consensus 173 sYDg~vrl~DtR~~----------------~~~v~elnhg~p--Ve~vl~-lpsgs~iasAg-Gn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSL----------------TSRVVELNHGCP--VESVLA-LPSGSLIASAG-GNSVKVWDLTTGGQLLT 232 (487)
T ss_pred CCCceEEEEEeccC----------------CceeEEecCCCc--eeeEEE-cCCCCEEEEcC-CCeEEEEEecCCceehh
Confidence 6 999999999875 222222245544 999999 78889998876 468999999854 5555
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.+..|...|+|+.+..++..|++++.|+.+++||+.+.+...--....+++.+. .++++..++.|..+|.+-+-+.
T Consensus 233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsia-vs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIA-VSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEE-ecCCCceEEEecccceeeeehh
Confidence 555699999999999999999999999999999977766432223566776665 6778889999999998877743
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-22 Score=151.10 Aligned_cols=205 Identities=16% Similarity=0.215 Sum_probs=157.7
Q ss_pred CCCccceEEEEEc-C-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--e
Q 021453 27 PMNSIRLNAIVID-P-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--L 102 (312)
Q Consensus 27 ~~h~~~v~~~~~~-p-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~ 102 (312)
.||++||..++|. | .| .+||+++.||+|.||.-..++. ........|...|++++|.|.+- .
T Consensus 53 ~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~w-------------~k~~e~~~h~~SVNsV~wapheygl~ 118 (299)
T KOG1332|consen 53 TGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGRW-------------TKAYEHAAHSASVNSVAWAPHEYGLL 118 (299)
T ss_pred cCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCch-------------hhhhhhhhhcccceeecccccccceE
Confidence 4799999999995 4 56 8999999999999999988864 22233367999999999999874 6
Q ss_pred EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---C-----------CEEEEec
Q 021453 103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---D-----------EYVMSGS 167 (312)
Q Consensus 103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---~-----------~~l~~~~ 167 (312)
|+++ +||.|.|.+.+.... ....+....|... |++++| .|. | +.|++|+
T Consensus 119 LacasSDG~vsvl~~~~~g~-------------w~t~ki~~aH~~G--vnsVsw-apa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSGG-------------WTTSKIVFAHEIG--VNSVSW-APASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred EEEeeCCCcEEEEEEcCCCC-------------ccchhhhhccccc--cceeee-cCcCCCccccccCcccccceeeccC
Confidence 6665 699999999876410 0233455678776 999999 675 4 5699999
Q ss_pred cCceEEEEeccCCe--eEEEeecCccceEEEEEcCCC----CeEEEEeCCCcEEEccCCCC--CC-CCCCCChhhhhhhh
Q 021453 168 DCGHLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHI----PMFATCGIEKTVKLWAPMPT--DF-PPLPDNAEKIMKAN 238 (312)
Q Consensus 168 ~dg~v~iwd~~~~~--~~~~~~~~~~~v~~v~~~p~~----~~l~t~~~d~~i~iwd~~~~--~~-~~~~~~~~~~~~~~ 238 (312)
.|..|+||+...++ ....+.+|.+.|.+++|.|.- .++|+++.||++.||..+.. .. .++...-..++-..
T Consensus 183 cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV 262 (299)
T ss_pred CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence 99999999988753 335588999999999999975 35999999999999987632 11 22222223334445
Q ss_pred ccCCCCceeEEecCCceEEEEEe
Q 021453 239 KQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.|+..+++|.....|+.+.+|.=
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEe
Confidence 57888999999999999999963
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=8.1e-23 Score=157.09 Aligned_cols=231 Identities=12% Similarity=0.162 Sum_probs=167.4
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|..+|+++.|+|.. .+|++|+.|++|++||+..-.. .+.|.. .....+|.++.|+|.|.+|+.+
T Consensus 170 DH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~sa---------KrA~K~----~qd~~~vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSA---------KRAFKV----FQDTEPVRSISFHPSGEFLLVGT 235 (430)
T ss_pred hccCcccceeecchh-heEEeccCCCeEEEEecccHHH---------HHHHHH----hhccceeeeEeecCCCceEEEec
Confidence 488999999999998 8999999999999999974421 111111 1235689999999999988887
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc---eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ---VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 183 (312)
.-..+++||+++. ++.. .-.+|... |+++.| ++.+++.++|+.||.|++||--+++++
T Consensus 236 dHp~~rlYdv~T~----------------QcfvsanPd~qht~a--i~~V~Y-s~t~~lYvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 236 DHPTLRLYDVNTY----------------QCFVSANPDDQHTGA--ITQVRY-SSTGSLYVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred CCCceeEEeccce----------------eEeeecCcccccccc--eeEEEe-cCCccEEEEeccCCcEEeeccccHHHH
Confidence 4778999999875 2211 12345555 999999 999999999999999999999899999
Q ss_pred EEee-cCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCC--hh-hhh-hhhccCCCCceeE-EecCCce
Q 021453 184 RLMV-GDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDN--AE-KIM-KANKQGREDHSRI-TLTPDVI 255 (312)
Q Consensus 184 ~~~~-~~~-~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~--~~-~~~-~~~~~~~~~~~l~-s~~~d~~ 255 (312)
.++. +|. ..|.+..|..+++++++.+.|..+++|.+.+++. ..+.+. .. ... +-+.+.....+++ ---..+.
T Consensus 297 ~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~s 376 (430)
T KOG0640|consen 297 RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNS 376 (430)
T ss_pred HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCc
Confidence 8884 565 4788999999999999999999999999998863 333322 11 111 1111222233332 2233456
Q ss_pred EEEEEecc-----------cCccceeEeecCCCccCCCCCCCeEEEe
Q 021453 256 MHVLRLQR-----------RQTLAYRERRYNAADFESDEEEGETYLL 291 (312)
Q Consensus 256 i~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (312)
+.-||.++ .....|+.++|.+..+....++-+.-+|
T Consensus 377 lcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 377 LCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred eeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence 66666443 4455677888888888877777665554
No 100
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=151.50 Aligned_cols=214 Identities=14% Similarity=0.243 Sum_probs=155.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
.||...|++++|+.+| ..|++.+.|++|++|+++...... ...+ ..++ .-+..+.++|.||.+ ++++
T Consensus 83 KgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~e----Hr~~----R~nv---e~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKE----HRCI----RQNV---EYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhh----hhHh----hccc---cCCCceEEEECCCcceEEEE
Confidence 3899999999999999 899999999999999998643210 0001 1111 123567899999998 5555
Q ss_pred e-cCCcEEEEEcCCCcC-CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021453 106 Y-NDELVYLFEKNMGLG-PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 183 (312)
. +..++++|.+..... .-......++ ....-+.|... +..+-. ...+.+|++++.|..|.+|+++ |+.+
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D-----~~~f~~kh~v~--~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHID-----NLEFERKHQVD--IINIGI-AGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred EccCCEEEEEEeeecccCCCCccccccc-----ccccchhcccc--eEEEee-cCCceEEEEecCCCcEEEEecC-Ccee
Confidence 5 588999998765421 0000001111 11111223333 666666 6788999999999999999999 9999
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC---CC------CCCCCCCChhhhhhhhccCCCCceeEEecCCc
Q 021453 184 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM---PT------DFPPLPDNAEKIMKANKQGREDHSRITLTPDV 254 (312)
Q Consensus 184 ~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 254 (312)
..+......-+..+.||+|+++++++.---|++|.+- .+ +...+.+|...+.. .+++++++..++.+.||
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~-~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLA-AAFSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheee-eeeCCCcceeEEEecCC
Confidence 9887766677889999999999999999999999953 22 23556788888854 45889999999999999
Q ss_pred eEEEEEec
Q 021453 255 IMHVLRLQ 262 (312)
Q Consensus 255 ~i~i~~~~ 262 (312)
.+++||.+
T Consensus 301 ~wriwdtd 308 (420)
T KOG2096|consen 301 KWRIWDTD 308 (420)
T ss_pred cEEEeecc
Confidence 99999864
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=166.62 Aligned_cols=230 Identities=10% Similarity=0.134 Sum_probs=174.6
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++|+....+...+-.+ .|..++|+++.|.+++ ..+++++.|+.+++|++...++
T Consensus 199 Ik~W~v~~~k~~~~~tL---------aGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~--------------- 253 (459)
T KOG0288|consen 199 IKLWNVLGEKSELISTL---------AGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRL--------------- 253 (459)
T ss_pred hhhhhcccchhhhhhhh---------hccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhh---------------
Confidence 56777665542222111 2346789999999999 7888889999999999998862
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCc-----------------------CCCCCcCCcccccCCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGL-----------------------GPSPLSLSPEDLQKRE 136 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~~~~ 136 (312)
.+.+.+|.+.|+++.|......++++ .|.+|++||+.+.. +-.+..+..|+.....
T Consensus 254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~ 333 (459)
T KOG0288|consen 254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD 333 (459)
T ss_pred hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCc
Confidence 23337899999999998776667776 49999999987643 1122344555555556
Q ss_pred CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC----ccceEEEEEcCCCCeEEEEeCCC
Q 021453 137 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD----RHVVNQLEPHPHIPMFATCGIEK 212 (312)
Q Consensus 137 ~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~v~~~p~~~~l~t~~~d~ 212 (312)
+......+. .|+++.. ++++..|++++.|.++.+.|+++.+....+.+. ....+.+.|||++.|+++||.||
T Consensus 334 ~~~sv~~gg---~vtSl~l-s~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg 409 (459)
T KOG0288|consen 334 KTRSVPLGG---RVTSLDL-SMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG 409 (459)
T ss_pred eeeEeecCc---ceeeEee-ccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCC
Confidence 666665543 3999998 899999999999999999999998887777532 23478899999999999999999
Q ss_pred cEEEccCCCCCCC-CCCC-ChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021453 213 TVKLWAPMPTDFP-PLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVL 259 (312)
Q Consensus 213 ~i~iwd~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~ 259 (312)
.|+||++.++++. .+.. +.++.+....|.+.+..+++.+.+..+.+|
T Consensus 410 sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 410 SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999863 2222 333245666688899999999999999998
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1e-21 Score=150.32 Aligned_cols=199 Identities=13% Similarity=0.181 Sum_probs=149.0
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
-.+.|.+++|||....++++|+.|++||+|++.. +.. .+ .....|.++|.+++|+.+|..++++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------------~~-ka~~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------------VP-KAQQSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc-------------cc-hhhhccCCCeEEEEEccCCceEEeec
Confidence 3678999999996657888999999999999986 342 22 3337789999999999999877776
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.|+.+++||+.++ ....+..|..+ |..+.|...- -+.|++|+.|.+|+.||++...++.+
T Consensus 92 ~Dk~~k~wDL~S~-----------------Q~~~v~~Hd~p--vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 92 CDKQAKLWDLASG-----------------QVSQVAAHDAP--VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT 152 (347)
T ss_pred cCCceEEEEccCC-----------------Ceeeeeecccc--eeEEEEecCCCcceeEecccccceeecccCCCCeeee
Confidence 6999999999986 56677778866 9999984322 34899999999999999999999988
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+.. .++++++.. -..+++.+..++.|.+|+++... ........+....+.....+....+.|+-+|.+.+..+..
T Consensus 153 ~~L-PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 153 LQL-PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDD 229 (347)
T ss_pred eec-cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCC
Confidence 874 457777654 45678888889999999997653 2223223333333433444444556777777777776655
No 103
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=3.9e-23 Score=154.25 Aligned_cols=233 Identities=15% Similarity=0.192 Sum_probs=189.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-||++.|.+.+.+.+. .+.|+++.|-+.++||.-++..+ .+ ..|..-|.+++|+.+.++|+++
T Consensus 56 eghkgavw~~~l~~na-~~aasaaadftakvw~a~tgdel---------hs-------f~hkhivk~~af~~ds~~lltg 118 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVTGDEL---------HS-------FEHKHIVKAVAFSQDSNYLLTG 118 (334)
T ss_pred eccCcceeeeecCchh-hhhhhhcccchhhhhhhhhhhhh---------hh-------hhhhheeeeEEecccchhhhcc
Confidence 4899999999999987 78899999999999999988732 11 3467779999999999988886
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.+..++|||++... .+.+.+.+|... |..+-| -...+.+++.+.|++|++||.+++..++.
T Consensus 119 g~ekllrvfdln~p~---------------App~E~~ghtg~--Ir~v~w-c~eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 119 GQEKLLRVFDLNRPK---------------APPKEISGHTGG--IRTVLW-CHEDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred chHHHhhhhhccCCC---------------CCchhhcCCCCc--ceeEEE-eccCceEEeeccCCceEEEEeccCcEEEE
Confidence 59999999998763 466788899977 999999 56777888889999999999999999998
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+. ...+|+++..+++|+++.++. .+.|++||..+..+ +.+. .+.. +..+..+|+...+++|+.|+.++.+|..++
T Consensus 181 L~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~n-V~SASL~P~k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCN-VESASLHPKKEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred Ee-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-Cccc-cccccccCCCceEEecCcceEEEEEeccCC
Confidence 87 457899999999999986664 68999999988764 3222 2222 355557788899999999999999998765
Q ss_pred Cccce-----------eEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021453 265 QTLAY-----------RERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 265 ~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
..+.. ..++|++..-+++.++|.+.+|....+.-
T Consensus 257 eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 257 EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 43322 27788999999999999999988766543
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.7e-22 Score=162.66 Aligned_cols=246 Identities=16% Similarity=0.185 Sum_probs=187.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC-CCCCCCCcc-cccccccc-cCCCccEEEEEEccCCCeEE
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-PISSDTPVD-TFCPRHLI-GKNNIHITGLAYSNTSELLI 104 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~l~ 104 (312)
.|..+|.+++++|++ .+.++++.+++|.-|++.+++... .++.+.... .+.+.... ..|...+.+++.+++|++|+
T Consensus 140 ~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred cccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 588999999999999 799999999999999999887431 111110000 11111111 37889999999999999999
Q ss_pred Eec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021453 105 SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 105 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 183 (312)
++. |..|.||+..+. +.++.+.+|.+. |.+++| -.....|++++.|+.|++|++.....+
T Consensus 219 tgg~d~~v~Iw~~~t~----------------ehv~~~~ghr~~--V~~L~f-r~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTL----------------EHVKVFKGHRGA--VSSLAF-RKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred ecCCCceEEEecCccc----------------chhhcccccccc--eeeeee-ecCccceeeeecCCceEEEehhHhHHH
Confidence 985 999999999998 788999999977 999999 667778999999999999999998889
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 184 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 184 ~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.++.+|...|..+.-...++.+..|+.|+++++|++.......+.++...+ .+.+ ..+..-+++|+.+|.|.+|++..
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~si-dcv~-~In~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSI-DCVA-FINDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCe-eeEE-EecccceeeccCCceEEEeeecc
Confidence 999999999999998888888888889999999999665555555554433 3332 23566899999999999999876
Q ss_pred cCcccee-----------------------EeecCCCccCCCCCCCeEEEeecCCC
Q 021453 264 RQTLAYR-----------------------ERRYNAADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 264 ~~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~~~~~~~ 296 (312)
...+ +. ..-+....++++.-+|.|-+|.++++
T Consensus 358 Kkpl-f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 358 KKPL-FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cCce-eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 5322 22 11122233445566677777777776
No 105
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.6e-22 Score=160.39 Aligned_cols=209 Identities=11% Similarity=0.125 Sum_probs=168.8
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
+++|.+++-+|.| .+|+.|+..|.|++|.+.+|.+. ..+.+|-..|+++.|+.||.+|+++ .|
T Consensus 81 Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL---------------~v~~aHYQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 81 PGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILL---------------NVLSAHYQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred ccceeeeecCCCc-eEEEeecccCcEEEEEeccccHH---------------HHHHhhccceeEEEEeCCCcEEEecCCC
Confidence 6789999999999 78888889999999999999742 2237899999999999999999997 59
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC--CCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|.|.+|.+..-..+.... ..++...|..|.-+ |+++.. .+ ...+|++++.|.++++||+..+..+..+
T Consensus 145 g~V~vW~l~~lv~a~~~~-------~~~p~~~f~~Htls--ITDl~i-g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDH-------SVKPLHIFSDHTLS--ITDLQI-GSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred ccEEEEEEEeecccccCC-------CccceeeeccCcce--eEEEEe-cCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 999999986542211111 22677888888865 998876 43 3468999999999999999999988877
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-----------------CCCCCCChh-hhhhhhccCCCCceeE
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----------------FPPLPDNAE-KIMKANKQGREDHSRI 248 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~l~ 248 (312)
. ....+.+++.+|.++.+..|+.+|.|.+.++..-. ...+.+|.. ..+++...+.++.+|+
T Consensus 215 ~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 215 T-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred e-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 5 45689999999999999999999999887754321 233445665 4457777889999999
Q ss_pred EecCCceEEEEEecccC
Q 021453 249 TLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 249 s~~~d~~i~i~~~~~~~ 265 (312)
+|+.||.+.+||+...+
T Consensus 294 SGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred eeCCCCCEEEEecchHH
Confidence 99999999999987653
No 106
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=4.2e-21 Score=144.73 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=148.7
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||.+.|.|+..+-+. ..+++|+.|.++++||+.+++++.. + .-..+|..+.|+++|++++.+
T Consensus 49 ~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~--------------~--k~~~~Vk~~~F~~~gn~~l~~ 111 (327)
T KOG0643|consen 49 DGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLAT--------------W--KTNSPVKRVDFSFGGNLILAS 111 (327)
T ss_pred cCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEE--------------e--ecCCeeEEEeeccCCcEEEEE
Confidence 5999999999999987 8999999999999999999984322 1 225678999999999966665
Q ss_pred c------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021453 107 N------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 180 (312)
Q Consensus 107 ~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~ 180 (312)
. .+.|.++|++.... +.....+...+..+... ++.+-| .|-+++|++|.+||.|.+||.+++
T Consensus 112 tD~~mg~~~~v~~fdi~~~~~---------~~~s~ep~~kI~t~~sk--it~a~W-g~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 112 TDKQMGYTCFVSVFDIRDDSS---------DIDSEEPYLKIPTPDSK--ITSALW-GPLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred ehhhcCcceEEEEEEccCChh---------hhcccCceEEecCCccc--eeeeee-cccCCEEEEecCCCcEEEEEcccC
Confidence 3 34589999974311 11111445556656644 888888 999999999999999999999998
Q ss_pred ee-EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021453 181 KL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 181 ~~-~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
+. +...+.|...|++++++|+..+++|++.|.+-++||..+.++ +++. ...+ +..+...|-...++.++..
T Consensus 180 ~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~P-vN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 180 KELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERP-VNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccc-ccceecccccceEEecCCc
Confidence 54 555578999999999999999999999999999999998764 3332 2222 3444455644455544443
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=3e-22 Score=168.67 Aligned_cols=227 Identities=16% Similarity=0.257 Sum_probs=182.2
Q ss_pred CccceEE-EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021453 29 NSIRLNA-IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 29 h~~~v~~-~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
|.+-|.. +++-+...-.+++|+.|++|.+|.+.... +...+.+|...|.++....++. +++++
T Consensus 56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~---------------P~~~LkgH~snVC~ls~~~~~~-~iSgS 119 (745)
T KOG0301|consen 56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE---------------PLYTLKGHKSNVCSLSIGEDGT-LISGS 119 (745)
T ss_pred CcceeeccceeccccCcceEeecccceEEEEecCCCC---------------chhhhhccccceeeeecCCcCc-eEecc
Confidence 4444555 77776332479999999999999998764 4444599999999998887777 67765
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|.++++|... ++...+.+|... |..++. -|++ .+++|+.|.+|++|.- ++.++++
T Consensus 120 WD~TakvW~~~------------------~l~~~l~gH~as--VWAv~~-l~e~-~~vTgsaDKtIklWk~--~~~l~tf 175 (745)
T KOG0301|consen 120 WDSTAKVWRIG------------------ELVYSLQGHTAS--VWAVAS-LPEN-TYVTGSADKTIKLWKG--GTLLKTF 175 (745)
T ss_pred cccceEEecch------------------hhhcccCCcchh--eeeeee-cCCC-cEEeccCcceeeeccC--Cchhhhh
Confidence 9999999876 466678999977 999987 4555 8899999999999975 7889999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc---
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR--- 263 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~--- 263 (312)
.+|+..|..+++-|++ .|++++.||.|++|++.+..+..+.+|++-++... ...++..+++.+.|++++||+...
T Consensus 176 ~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis-~~~~~~~Ivs~gEDrtlriW~~~e~~q 253 (745)
T KOG0301|consen 176 SGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS-MALSDGLIVSTGEDRTLRIWKKDECVQ 253 (745)
T ss_pred ccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEE-ecCCCCeEEEecCCceEEEeecCceEE
Confidence 9999999999998874 57799999999999998888899999999886655 456788999999999999998542
Q ss_pred ----cCccceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021453 264 ----RQTLAYRERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 264 ----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
+...+|....-...++..+..+|+|+++-.+..-
T Consensus 254 ~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEecCccceEEEEEeeCCCEEEeccCceEEEEEecccc
Confidence 2233444444456788888999999999876443
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.8e-22 Score=166.99 Aligned_cols=206 Identities=15% Similarity=0.190 Sum_probs=160.3
Q ss_pred CccceEEEEE-cCCCCcEEEEEeCCCeEEEEEccCCe--ecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 29 NSIRLNAIVI-DPRNPNYFAVGGSDEYARVYDIRKCH--WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~-~p~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
|...|.|++. -++. .++|+|+-|+.|.+||+.++. +.... .......+..++...|++++.++.|.++++
T Consensus 116 H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~------n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASF------NNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred ccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhc------cccccccCCCCCccceeeeecCCcceEEEe
Confidence 8999999999 6666 899999999999999999873 11110 011122232488999999999999998988
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
|+ .+.+++||.++. +.+..++||... |..+.. +++|..+++++.||+|++||+...+++.
T Consensus 189 Ggtek~lr~wDprt~----------------~kimkLrGHTdN--Vr~ll~-~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTC----------------KKIMKLRGHTDN--VRVLLV-NDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred cCcccceEEeccccc----------------cceeeeeccccc--eEEEEE-cCCCCeEeecCCCceEEeeeccccceee
Confidence 75 999999999998 788889999977 999998 9999999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC-CCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
++..|...|.++..+|+-.++.+|+.||.|..=|+++.... .+.....++........+. .+-..+.|+.|+-|..
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~-~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDN-SVWVTTTDSSIKRWKL 326 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccC-CceeeeccccceecCC
Confidence 99999999999999999999999999999999999885322 2222233332222111122 2245556666666643
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.8e-22 Score=155.72 Aligned_cols=215 Identities=13% Similarity=0.188 Sum_probs=160.2
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc------CCeecCCCC--------------------CCCCccccc
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR------KCHWYSPIS--------------------SDTPVDTFC 79 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~------~~~~~~~~~--------------------~~~~~~~~~ 79 (312)
|-||.+.|++++|++.+ .++++++.|++..||... ...-..... .+.+... .
T Consensus 186 Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR-v 263 (481)
T KOG0300|consen 186 YTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR-V 263 (481)
T ss_pred ecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee-e
Confidence 45799999999999998 899999999999999832 100000000 0000000 1
Q ss_pred ccccccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021453 80 PRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
+...+.+|...|.+..|-..|+.+++++ |.+..+||++++ ..+..+.||... ++.++- +|
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----------------e~v~~LtGHd~E--LtHcst-Hp 324 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG----------------EVVNILTGHDSE--LTHCST-HP 324 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC----------------ceeccccCcchh--cccccc-CC
Confidence 2223368999999999999999899876 999999999998 899999999977 888887 89
Q ss_pred CCCEEEEeccCceEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhh
Q 021453 159 NDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIM 235 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~ 235 (312)
..+++++.+.|.+.++||++.. +.+..|++|...|+++.|..+ ..+++|+.|.+|++||++..+ +.++. .....
T Consensus 325 tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~ 401 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPA 401 (481)
T ss_pred cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee--cCCcc
Confidence 9999999999999999999854 456788999999999999866 457799999999999998765 33332 22222
Q ss_pred hhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 236 KANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.....+.....++.--.+..+++||++..
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCC
Confidence 33334444444444455578999998654
No 110
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=2e-23 Score=165.81 Aligned_cols=235 Identities=14% Similarity=0.212 Sum_probs=188.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
.|.+.+..+.|-++. ..|++|+.|..|++|+....+. .....+.+..++|+.+.|.++++.+++ +
T Consensus 173 ~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k~-------------~~~~tLaGs~g~it~~d~d~~~~~~iAas 238 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEKS-------------ELISTLAGSLGNITSIDFDSDNKHVIAAS 238 (459)
T ss_pred ccccccceeEEccCc-chhhhcchhhhhhhhhcccchh-------------hhhhhhhccCCCcceeeecCCCceEEeec
Confidence 588999999999986 6999999999999999986652 122223666788999999999985555 6
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|+.+++|++... +...++.+|... |+++.| ......+++|+.|.+|+.||+....+.+++
T Consensus 239 ~d~~~r~Wnvd~~----------------r~~~TLsGHtdk--Vt~ak~-~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 239 NDKNLRLWNVDSL----------------RLRHTLSGHTDK--VTAAKF-KLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred CCCceeeeeccch----------------hhhhhhcccccc--eeeehh-hccccceeeccccchhhhhhhhhhheeccc
Confidence 7999999999988 788999999977 999999 566666999999999999999988887766
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
- ....+.+|..+ ...++++..|++||+||.++... ..++.+. .++....+.++..+++.+.|..+.+.|++..+
T Consensus 300 l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 300 L-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred c-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeeccccc
Confidence 4 23456677665 56688999999999999998875 3443333 34555677888999999999999999987643
Q ss_pred cc--------------ceeEeecCCCccCCCCCCCeEEEeecCCCCCCC
Q 021453 266 TL--------------AYRERRYNAADFESDEEEGETYLLGFSDSDASS 300 (312)
Q Consensus 266 ~~--------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 300 (312)
.. ....++|+..+++.+..+|.||+|++..+..+.
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 22 223789999999999999999999998776544
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=8e-23 Score=166.43 Aligned_cols=222 Identities=11% Similarity=0.109 Sum_probs=176.3
Q ss_pred CeeecccCccc-eeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021453 1 MWQFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
|+|||+..+.. .++-.+.... ....|.++...|++ +.|++|+.-.++.|||+..-...
T Consensus 442 VKVWdis~pg~k~PvsqLdcl~-------rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTpr------------- 500 (705)
T KOG0639|consen 442 VKVWDISQPGNKSPVSQLDCLN-------RDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPR------------- 500 (705)
T ss_pred EEEeeccCCCCCCccccccccC-------cccceeeeEecCCC-ceEEeccccceeeeeeccCCCcc-------------
Confidence 68999975432 2232222221 24569999999999 89999999999999999865421
Q ss_pred ccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021453 80 PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
.+.-+......+.+++.+||.++.+++ +||.|.|||+.+. ..++.|+||.+. +.|+.. ++
T Consensus 501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----------------~~VrqfqGhtDG--ascIdi-s~ 561 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-SK 561 (705)
T ss_pred hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----------------eeeecccCCCCC--ceeEEe-cC
Confidence 111113334567789999999977775 8999999999987 789999999988 999998 99
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhh
Q 021453 159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKAN 238 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 238 (312)
+|..|.+|+-|.+|+.||+++++.+.... ....|.++-.+|++.+++.|-+++.+-|-.....+...+..|..-++. .
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLS-l 639 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLS-L 639 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEE-E
Confidence 99999999999999999999987665433 457899999999999999999999999988887777777666666644 4
Q ss_pred ccCCCCceeEEecCCceEEEEEeccc
Q 021453 239 KQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+..-+.++++.+.|..+..|+..-+
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred EecccCceeeecCchhhhhhccCccc
Confidence 57788999999999999999986555
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.3e-22 Score=152.80 Aligned_cols=195 Identities=14% Similarity=0.220 Sum_probs=145.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCC-CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
|++||++..+....+.. |.+.|+++.|.+.- ..-|++|+.||.|.+|+..... +
T Consensus 65 I~IYDm~k~~qlg~ll~-----------HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--------------~ 119 (362)
T KOG0294|consen 65 IHIYDMRKRKQLGILLS-----------HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--------------L 119 (362)
T ss_pred EEEEeccchhhhcceec-----------cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--------------E
Confidence 57888887776666554 78899999998854 1379999999999999999876 3
Q ss_pred ccccccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCcCCCCCcCCc------ccccC-------CCCCceE----
Q 021453 80 PRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSP------EDLQK-------REEPQVY---- 141 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~-------~~~~~~~---- 141 (312)
...+ .+|...|+.++.+|.+++..+ +.|+.++.||+-.++......+.. |..+. ...+-.+
T Consensus 120 ~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~ 198 (362)
T KOG0294|consen 120 LKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDN 198 (362)
T ss_pred eeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEeccc
Confidence 3333 889999999999999997776 689999999998775332221111 11000 0000111
Q ss_pred ----ecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE--cCCCCeEEEEeCCCcEE
Q 021453 142 ----SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP--HPHIPMFATCGIEKTVK 215 (312)
Q Consensus 142 ----~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~--~p~~~~l~t~~~d~~i~ 215 (312)
..-..+..+.++.| .++..|++|.+++.|.+||.++..+...+.+|..+|.++.+ .|++.+|+|+|.||.|+
T Consensus 199 A~v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~ 276 (362)
T KOG0294|consen 199 ASVFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIK 276 (362)
T ss_pred HhHhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEE
Confidence 11111122666666 57889999999999999999999999999999999999984 56788999999999999
Q ss_pred EccCCCCC
Q 021453 216 LWAPMPTD 223 (312)
Q Consensus 216 iwd~~~~~ 223 (312)
|||++...
T Consensus 277 vWd~~~~~ 284 (362)
T KOG0294|consen 277 VWDIDMET 284 (362)
T ss_pred EEEccccc
Confidence 99998763
No 113
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=5.6e-21 Score=149.80 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=146.4
Q ss_pred cCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021453 85 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 163 (312)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l 163 (312)
..|...+.+++.+|+.++++++ .|..-++|++.++ .....+.+|+.. |+++.| +.+|.+|
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g----------------e~~~eltgHKDS--Vt~~~F-shdgtlL 121 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG----------------EFAGELTGHKDS--VTCCSF-SHDGTLL 121 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC----------------cceeEecCCCCc--eEEEEE-ccCceEE
Confidence 7899999999999988899997 5999999999998 788889999977 999999 9999999
Q ss_pred EEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCC
Q 021453 164 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGR 242 (312)
Q Consensus 164 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 242 (312)
++|..+|.|+||...++.....+...-..+.=+.|||.+..|++|+.||.+-+|.+..+. .+.+.+|.... .+..+.+
T Consensus 122 ATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c-t~G~f~p 200 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPC-TCGEFIP 200 (399)
T ss_pred EecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCc-ccccccC
Confidence 999999999999999998877776455677789999999999999999999999999854 57777766665 6777889
Q ss_pred CCceeEEecCCceEEEEEecccCcccee
Q 021453 243 EDHSRITLTPDVIMHVLRLQRRQTLAYR 270 (312)
Q Consensus 243 ~~~~l~s~~~d~~i~i~~~~~~~~~~~~ 270 (312)
++..++++..|++|++|+..+.+.+..+
T Consensus 201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 201 DGKRILTGYDDGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred CCceEEEEecCceEEEEecCCCceeEEe
Confidence 9999999999999999999888655433
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=5.7e-21 Score=153.93 Aligned_cols=199 Identities=13% Similarity=0.180 Sum_probs=158.3
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
+|...+.+++.+|++ ++|++|+.|..|.||+.++.+. + ..+.+|.+.|.+++|-.....|.+ +
T Consensus 200 ~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~eh---------v------~~~~ghr~~V~~L~fr~gt~~lys~s 263 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEH---------V------KVFKGHRGAVSSLAFRKGTSELYSAS 263 (479)
T ss_pred cccceeEEEEEcCCC-cEEEecCCCceEEEecCcccch---------h------hcccccccceeeeeeecCccceeeee
Confidence 689999999999999 8999999999999999999862 2 223899999999999887765555 5
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|..|++|++... ..+.++.+|... |.++.- ..-++.+.+|+.|+++++|++. -+....+
T Consensus 264 ~Drsvkvw~~~~~----------------s~vetlyGHqd~--v~~Ida-L~reR~vtVGgrDrT~rlwKi~-eesqlif 323 (479)
T KOG0299|consen 264 ADRSVKVWSIDQL----------------SYVETLYGHQDG--VLGIDA-LSRERCVTVGGRDRTVRLWKIP-EESQLIF 323 (479)
T ss_pred cCCceEEEehhHh----------------HHHHHHhCCccc--eeeech-hcccceEEeccccceeEEEecc-ccceeee
Confidence 6999999999876 677888999977 999987 5567777777899999999994 3444567
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC-CCC-CCh-----------hhhhhhhccCCCCceeEEecCC
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLP-DNA-----------EKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~-~~~-----------~~~~~~~~~~~~~~~l~s~~~d 253 (312)
.+|.+.+-+++|-.+ ..|++|+.+|.|.+|++...++. +.. .|. .++ ......+..+++++++.+
T Consensus 324 rg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wi-tsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 324 RGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWI-TSLAVIPGSDLLASGSWS 401 (479)
T ss_pred eCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccce-eeeEecccCceEEecCCC
Confidence 788889999998654 67889999999999998776531 111 110 022 233345678899999999
Q ss_pred ceEEEEEeccc
Q 021453 254 VIMHVLRLQRR 264 (312)
Q Consensus 254 ~~i~i~~~~~~ 264 (312)
|.+++|-+..+
T Consensus 402 G~vrLW~i~~g 412 (479)
T KOG0299|consen 402 GCVRLWKIEDG 412 (479)
T ss_pred CceEEEEecCC
Confidence 99999998766
No 115
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=3.9e-21 Score=151.34 Aligned_cols=220 Identities=18% Similarity=0.200 Sum_probs=159.6
Q ss_pred CCCccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eE
Q 021453 27 PMNSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LL 103 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~-~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 103 (312)
.+|.+.++.+.-++.+. .+.++=+..|.|+||++... +.........+...+.+.....+|...=+.|.|||--. .|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35788888888887652 35555588999999998632 11111111111122333334478888899999999443 56
Q ss_pred EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCe
Q 021453 104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~ 181 (312)
++|. -+.|++|...++. |.+ -.+.|.+|... |-.++| +|. ...|++|+.||.|+|||++.++
T Consensus 228 lsGDc~~~I~lw~~~~g~---------W~v----d~~Pf~gH~~S--VEDLqW-SptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGS---------WKV----DQRPFTGHTKS--VEDLQW-SPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred ccCccccceEeeeeccCc---------eee----cCccccccccc--hhhhcc-CCccCceEEeeecCceEEEEEecCCC
Confidence 7764 8899999987652 111 12345678866 999999 665 5678999999999999999872
Q ss_pred --eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC----CCCCCChhhhhhhhccCC-CCceeEEecCCc
Q 021453 182 --LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF----PPLPDNAEKIMKANKQGR-EDHSRITLTPDV 254 (312)
Q Consensus 182 --~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~ 254 (312)
.....++|.+.|+.+.|+....+||+|+.||+++|||++..+. ..+.-|..++.... |++ +...+++++.|.
T Consensus 292 ~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsie-W~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 292 KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIE-WHPHEDSVIAASGEDN 370 (440)
T ss_pred ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEE-eccccCceEEeccCCC
Confidence 2223388999999999999989999999999999999987654 35665666665544 555 788889999999
Q ss_pred eEEEEEecc
Q 021453 255 IMHVLRLQR 263 (312)
Q Consensus 255 ~i~i~~~~~ 263 (312)
++.+||+.-
T Consensus 371 QitiWDlsv 379 (440)
T KOG0302|consen 371 QITIWDLSV 379 (440)
T ss_pred cEEEEEeec
Confidence 999999864
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.5e-20 Score=159.25 Aligned_cols=232 Identities=13% Similarity=0.175 Sum_probs=185.1
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
.|..+.+.++|.|+| +.|++++.||.|++|+.....- .+..+ ..+...|.+++.... .|++ +
T Consensus 11 aht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e-------------~P~ti-~~~g~~v~~ia~~s~--~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEE-------------EPETI-DISGELVSSIACYSN--HFLTGS 73 (933)
T ss_pred hccCceEEEEEcCCC-CEEEEecCCCceEEeecCCccc-------------CCchh-hccCceeEEEeeccc--ceEEee
Confidence 388899999999999 7999999999999999876520 22222 336777877776443 5555 4
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.+++|.+|.+.++ ..-..+....-+ +++++| +.+|++++.|+.|-.|++.++.+......+
T Consensus 74 ~~~tv~~y~fps~----------------~~~~iL~Rftlp--~r~~~v-~g~g~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 74 EQNTVLRYKFPSG----------------EEDTILARFTLP--IRDLAV-SGSGKMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred ccceEEEeeCCCC----------------Cccceeeeeecc--ceEEEE-ecCCcEEEeecCceeEEEEeccccchheee
Confidence 6999999999876 333333333433 889999 899999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC-------ChhhhhhhhccCCCCceeEEecCCceEEE
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-------NAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
++|.++|.++.|+|.+.+||+.+-||.|++|+++.+.+ .++.+ ....++....|++++..++..+.|+.|++
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV 214 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence 99999999999999999999999999999999998764 33221 12455666778999888999999999999
Q ss_pred EEeccc------------CccceeEeecCCCccCCCCCCCeEEEeecCC
Q 021453 259 LRLQRR------------QTLAYRERRYNAADFESDEEEGETYLLGFSD 295 (312)
Q Consensus 259 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 295 (312)
++...- ....+..++|.+.+++...-++.|.+||.+.
T Consensus 215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 874321 1233448999999999999999999999875
No 117
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=9.7e-21 Score=150.00 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=160.4
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
-||+++|..++|+|.+.+.||+|+.|.+|.||.+....+..... .+...+.+|...|..++|+|... .|++
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------epvv~L~gH~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------EPVVELYGHQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--------cceEEEeecceeEEEEeecccchhhHhh
Confidence 38999999999999888999999999999999998765432211 23333489999999999999875 6666
Q ss_pred -ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 106 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+.|.+|.+||+.++ +.+..+. |... |.+++| +.+|.+|++.+.|..|+|||.++++.+.
T Consensus 150 ag~Dn~v~iWnv~tg----------------eali~l~-hpd~--i~S~sf-n~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTG----------------EALITLD-HPDM--VYSMSF-NRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred ccCCceEEEEeccCC----------------ceeeecC-CCCe--EEEEEe-ccCCceeeeecccceeEEEcCCCCcEee
Confidence 57999999999998 5555665 7755 999999 9999999999999999999999999999
Q ss_pred EeecCcc-ceEEEEEcCCCCeEEEEe---CCCcEEEccCCCCC-CCCCC--CChhhhhhhhccCCCCce-eEEecCCceE
Q 021453 185 LMVGDRH-VVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD-FPPLP--DNAEKIMKANKQGREDHS-RITLTPDVIM 256 (312)
Q Consensus 185 ~~~~~~~-~v~~v~~~p~~~~l~t~~---~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~-l~s~~~d~~i 256 (312)
.-.+|.+ ....+.|-.++..+.||- .+..+-+||....+ ...+. ...+.++- -.+.++..+ .+.|-.|+.|
T Consensus 210 e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~-PFyD~dt~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLL-PFYDPDTSIVYLCGKGDSSI 288 (472)
T ss_pred ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEE-eeecCCCCEEEEEecCCcce
Confidence 8888874 445677888988555543 57899999987654 21111 23333322 224455444 4566678999
Q ss_pred EEEEecccC
Q 021453 257 HVLRLQRRQ 265 (312)
Q Consensus 257 ~i~~~~~~~ 265 (312)
|-+.+....
T Consensus 289 RYyEit~d~ 297 (472)
T KOG0303|consen 289 RYFEITNEP 297 (472)
T ss_pred EEEEecCCC
Confidence 999987653
No 118
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=7.3e-21 Score=153.24 Aligned_cols=204 Identities=14% Similarity=0.181 Sum_probs=155.5
Q ss_pred CccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEE
Q 021453 29 NSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s 105 (312)
|..+|++++|+|... .++|+|..-|.|-+||+.+.+.. . ....+...|..+|.+|.|+|... ++.+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d--------~---d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD--------K---DGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc--------c---CceEEeccCCccccceEecCCChhheeee
Confidence 678999999999876 68999999999999999743311 0 12223377999999999999774 5555
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee-EE
Q 021453 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VR 184 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~ 184 (312)
+.||+|++-|+++. .....+........+.++.| +.+...++.+..=|.+.+||++++.. ..
T Consensus 254 SyDGtiR~~D~~~~----------------i~e~v~s~~~d~~~fs~~d~-~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGN----------------ISEEVLSLDTDNIWFSSLDF-SAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred ccCceeeeeeecch----------------hhHHHhhcCccceeeeeccc-cCCCccEEEeecccceEEEEeecCCccch
Confidence 67999999999876 22222222222234777787 66777777777777999999998665 56
Q ss_pred EeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-----CCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021453 185 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
.+..|...|.+|+++|..++ |||+|.|++.+|||++.-.. .....|...+ ..+.+++.+..|++.+.|..|+|
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV-~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV-NSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee-eeeEEcCCCCceEeeccCCceEE
Confidence 66778889999999999877 99999999999999875432 2223355555 77778897777999999999999
Q ss_pred EEe
Q 021453 259 LRL 261 (312)
Q Consensus 259 ~~~ 261 (312)
||.
T Consensus 396 ~ds 398 (498)
T KOG4328|consen 396 FDS 398 (498)
T ss_pred eec
Confidence 997
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=8.1e-21 Score=160.16 Aligned_cols=192 Identities=16% Similarity=0.240 Sum_probs=153.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||...|.|++...++ .+++||.|.++++|...... .. +.+|...|++++.-|++.++..+
T Consensus 98 kgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~----------------~~-l~gH~asVWAv~~l~e~~~vTgs 158 (745)
T KOG0301|consen 98 KGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV----------------YS-LQGHTASVWAVASLPENTYVTGS 158 (745)
T ss_pred hccccceeeeecCCcC--ceEecccccceEEecchhhh----------------cc-cCCcchheeeeeecCCCcEEecc
Confidence 5899999999988776 49999999999999976432 22 38999999999999998655556
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|.+|++|.-. +.+++|.+|.+- |+.+++ - ++.-+++++.||.|+.|++ +++++..+
T Consensus 159 aDKtIklWk~~------------------~~l~tf~gHtD~--VRgL~v-l-~~~~flScsNDg~Ir~w~~-~ge~l~~~ 215 (745)
T KOG0301|consen 159 ADKTIKLWKGG------------------TLLKTFSGHTDC--VRGLAV-L-DDSHFLSCSNDGSIRLWDL-DGEVLLEM 215 (745)
T ss_pred CcceeeeccCC------------------chhhhhccchhh--eeeeEE-e-cCCCeEeecCCceEEEEec-cCceeeee
Confidence 79999999863 688999999976 999998 3 4445789999999999999 69999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.+|+.-|++++..+++..++++++|++++||+.. .....+.-....+.... ...+.-++++++||.+|||....
T Consensus 216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~--~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAK--VLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEE--EeeCCCEEEeccCceEEEEEecc
Confidence 9999999999988888999999999999999977 22222221111222211 11345688999999999998653
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=4.1e-20 Score=141.41 Aligned_cols=231 Identities=17% Similarity=0.254 Sum_probs=161.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC---CeE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELL 103 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l 103 (312)
-+|+-.|.++.|-|-..-+|.+++.|.++++||..+.+.. ..| .-.+.|.+-+++|-. .++
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a---------~~F-------~me~~VYshamSp~a~sHcLi 161 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA---------VDF-------KMEGKVYSHAMSPMAMSHCLI 161 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceee---------EEe-------ecCceeehhhcChhhhcceEE
Confidence 3689999999999955469999999999999999988732 111 124567777888844 266
Q ss_pred EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE-EEEeccCceEEEEeccCC-
Q 021453 104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGG- 180 (312)
Q Consensus 104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~-l~~~~~dg~v~iwd~~~~- 180 (312)
|++ .+-+|++.|+.++ ....++.||... |.++.| +|...+ |++|+.||.|++||++..
T Consensus 162 A~gtr~~~VrLCDi~SG----------------s~sH~LsGHr~~--vlaV~W-sp~~e~vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 162 AAGTRDVQVRLCDIASG----------------SFSHTLSGHRDG--VLAVEW-SPSSEWVLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred EEecCCCcEEEEeccCC----------------cceeeeccccCc--eEEEEe-ccCceeEEEecCCCceEEEEEeeccc
Confidence 666 5889999999998 788999999987 999999 787766 689999999999998753
Q ss_pred eeEEE--------------eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC--CCCCC--Ch-hhhhhhhccC
Q 021453 181 KLVRL--------------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--PPLPD--NA-EKIMKANKQG 241 (312)
Q Consensus 181 ~~~~~--------------~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~--~~~~~--~~-~~~~~~~~~~ 241 (312)
-+... -..|.+.|+.++|..++.++++++.|..+++|+...++- ..+.. +. ..-+.....+
T Consensus 223 gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~ 302 (397)
T KOG4283|consen 223 GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQS 302 (397)
T ss_pred ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEee
Confidence 22222 235778899999999999999999999999999877642 21110 00 0000000011
Q ss_pred C-----------CCceeEEecCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEEeec
Q 021453 242 R-----------EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGF 293 (312)
Q Consensus 242 ~-----------~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (312)
. ++-.+++......|++|+.. ........+.++.+...+++-++.+|.+-.
T Consensus 303 ~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h-~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 303 MDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH-LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccceEEEEecCCeEEEEEccCceEEEeeecc-cceeeEEeecCchhhhhccccCCccccccc
Confidence 1 23344455555666667654 222222255666667777776766766643
No 121
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-21 Score=159.09 Aligned_cols=244 Identities=50% Similarity=0.907 Sum_probs=192.1
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|+-+|++...+...+.+...+... .-..++++.+|.+.+.+++|+.|..+++||.+.-+.. ....++..||+
T Consensus 257 v~~~Dlr~~~pa~~~~cr~~~~~~-----~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e---~~n~~~~~f~p 328 (559)
T KOG1334|consen 257 VFHIDLRQDVPAEKFVCREADEKE-----RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE---ENNGVLDKFCP 328 (559)
T ss_pred eeeeeeccCCccceeeeeccCCcc-----ceeeeeEecCCCCccccccCChhhhhhhhcccchhhc---cccchhhhcCC
Confidence 345788888888788777665321 2368899999998889999999999999999865422 11236788899
Q ss_pred cccccCCCccEEEEEEccCC-CeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~-~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
.++.......|++++|+.++ .+|++.+|-.|++|.-..+.++......+. .....+.++||.+..+|..+.|+-|.
T Consensus 329 ~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~---~~~~k~vYKGHrN~~TVKgVNFfGPr 405 (559)
T KOG1334|consen 329 HHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR---EQYVKRVYKGHRNSRTVKGVNFFGPR 405 (559)
T ss_pred ccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch---hhccchhhcccccccccceeeeccCc
Confidence 99888778889999999766 588888999999997665544332222211 11233458999998889999999999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhc
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK 239 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 239 (312)
..|+++|+.-|.|+||+-.+++.++.+.+...-|+|+.-||--+.||+++-|.-|+||.+.+.+....+...+.+++.+.
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~rN~ 485 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIKRNK 485 (559)
T ss_pred cceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHhhhc
Confidence 99999999999999999999999998888777999999999999999999999999999977776666667788888887
Q ss_pred cCC-CCceeEEecCCce
Q 021453 240 QGR-EDHSRITLTPDVI 255 (312)
Q Consensus 240 ~~~-~~~~l~s~~~d~~ 255 (312)
+.. +..+-++...|..
T Consensus 486 ~~~~ed~~~~t~~~d~~ 502 (559)
T KOG1334|consen 486 RERDEDSLTVTDPFDQY 502 (559)
T ss_pred cccccccccccCcHHHH
Confidence 775 4555556555543
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.7e-20 Score=155.21 Aligned_cols=202 Identities=12% Similarity=0.154 Sum_probs=156.1
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
+.+|.+++|+.+. +.||.+-.||.|.+|++...= ++...+..+....|.+++|++.++++.++.+|
T Consensus 25 Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w-------------~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg 90 (691)
T KOG2048|consen 25 PSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNW-------------FLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG 90 (691)
T ss_pred ccceEEEEEeccC-CceeeeccCCcEEEEccCCCc-------------eeeEEEecCCCCceeeEEEccCCeEEeecCCc
Confidence 7789999999988 789999999999999998642 23444434556789999999777777778899
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE--Eee
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--LMV 187 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~ 187 (312)
.|.-||+.+. +....+....+. |.+++. +|.+..++.|++||.++.++..+++... .+.
T Consensus 91 ~i~EwDl~~l----------------k~~~~~d~~gg~--IWsiai-~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 91 SITEWDLHTL----------------KQKYNIDSNGGA--IWSIAI-NPENTILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred eEEEEecccC----------------ceeEEecCCCcc--eeEEEe-CCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence 9999999887 666666655544 999998 9999999999999988888887776543 344
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-----CCCChhhhhhhhccC---CCCceeEEecCCceEEEE
Q 021453 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-----LPDNAEKIMKANKQG---REDHSRITLTPDVIMHVL 259 (312)
Q Consensus 188 ~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~l~s~~~d~~i~i~ 259 (312)
..+++|.+++|+|++..+++|+.||.|++||..++.-.. +-...+.--.+. |+ .....+++|...|.+++|
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iV-WSv~~Lrd~tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIV-WSVLFLRDSTIASGDSAGTVTFW 230 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEE-EEEEEeecCcEEEecCCceEEEE
Confidence 456899999999999999999999999999998775211 111111011111 22 145689999999999999
Q ss_pred EecccC
Q 021453 260 RLQRRQ 265 (312)
Q Consensus 260 ~~~~~~ 265 (312)
|...+.
T Consensus 231 d~~~gT 236 (691)
T KOG2048|consen 231 DSIFGT 236 (691)
T ss_pred cccCcc
Confidence 976653
No 123
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=2.1e-20 Score=143.25 Aligned_cols=214 Identities=13% Similarity=0.157 Sum_probs=148.1
Q ss_pred CeeecccCc-cceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021453 1 MWQFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
||+|+++.. ...+... -.|.++|.+++|+.+| ..+++|+.|+.+++||+.+++..
T Consensus 52 VR~wevq~~g~~~~ka~----------~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q~~------------- 107 (347)
T KOG0647|consen 52 VRIWEVQNSGQLVPKAQ----------QSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQVS------------- 107 (347)
T ss_pred eEEEEEecCCcccchhh----------hccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCCee-------------
Confidence 578888653 2222111 1278999999999999 89999999999999999998732
Q ss_pred ccccccCCCccEEEEEEccCCC--eEEEec-CCcEEEEEcCCCcCCCCCcCCccc-----------------------cc
Q 021453 80 PRHLIGKNNIHITGLAYSNTSE--LLISYN-DELVYLFEKNMGLGPSPLSLSPED-----------------------LQ 133 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~--~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~-----------------------~~ 133 (312)
.+ ..|..+|..+.|-+... .|++++ |++|+.||.+....-....++..- +.
T Consensus 108 --~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 108 --QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred --ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 12 77999999999988775 888986 999999999875421112221111 11
Q ss_pred CCCCCceEecccCC--ceeeEEEEecCCCCEEEEeccCceEEEEeccCC--eeEEEeecCcc---------ceEEEEEcC
Q 021453 134 KREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRH---------VVNQLEPHP 200 (312)
Q Consensus 134 ~~~~~~~~~~~~~~--~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~---------~v~~v~~~p 200 (312)
. ....++.+..+ -.+++|+. -.+.+-.+.|+-+|++.|..+..+ +.-..++-|.. .|++++|+|
T Consensus 185 n--~~te~k~~~SpLk~Q~R~va~-f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 185 N--PPTEFKRIESPLKWQTRCVAC-FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred C--CcchhhhhcCcccceeeEEEE-EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 1 01111111111 12788888 567766799999999999998876 44456666652 578899999
Q ss_pred CCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCc
Q 021453 201 HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH 245 (312)
Q Consensus 201 ~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
....|+|++.||++.+||-.... +.+.+.+..++ .+..+..++.
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpI-tcc~fn~~G~ 306 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPI-TCCSFNRNGS 306 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCcc-ceeEecCCCC
Confidence 99999999999999999977653 55555555555 3333444433
No 124
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.5e-19 Score=138.29 Aligned_cols=215 Identities=11% Similarity=0.142 Sum_probs=150.5
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcE
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV 111 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i 111 (312)
..|+.|++.| .+||+|+.||.|.|||+.+.. +...+.+|..+|++++||++|+.|+++ .|..|
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~---------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFR---------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccc---------------hhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 6799999999 899999999999999999875 344448999999999999999988886 59999
Q ss_pred EEEEcCCCcCCCCCcC--Cccc---------------ccCCC-------CCceE-ecccC--Cc-eeeEEEEecCCCCEE
Q 021453 112 YLFEKNMGLGPSPLSL--SPED---------------LQKRE-------EPQVY-SGHRN--SQ-TVKGVNFFGPNDEYV 163 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~--~~~~---------------~~~~~-------~~~~~-~~~~~--~~-~v~~v~~~s~~~~~l 163 (312)
.+||+..+.......+ ++|. +.... ..+.+ ..... .. ...+..| .+.|+++
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~f-dr~g~yI 168 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVF-DRRGKYI 168 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccc-cCCCCEE
Confidence 9999988741111000 1111 00000 00111 00000 00 1222335 8889999
Q ss_pred EEeccCceEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-------CCCCCCCChh---
Q 021453 164 MSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-------DFPPLPDNAE--- 232 (312)
Q Consensus 164 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~~--- 232 (312)
++|...|.+.+++..+.+++..++... ..|..+.++..|+.|+..+.|+.||.|+++.- ++........
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 999999999999999999998887655 78999999999999999999999999997632 1111111111
Q ss_pred -hhhhhhccCCCCceeEEecCC-ceEEEEEeccc
Q 021453 233 -KIMKANKQGREDHSRITLTPD-VIMHVLRLQRR 264 (312)
Q Consensus 233 -~~~~~~~~~~~~~~l~s~~~d-~~i~i~~~~~~ 264 (312)
......+++.++.++++++.. ..++||.-..+
T Consensus 249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred hhhhhheeecCCccEEEeccccceeEEEEecCCc
Confidence 123334455688888887754 67889974433
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.2e-20 Score=150.80 Aligned_cols=185 Identities=14% Similarity=0.223 Sum_probs=143.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++|.+.++....++. .|=..|+|+.|+-++ ..|++|+.||.|.+|.+-..--.. +-....+
T Consensus 105 lYlWelssG~LL~v~~-----------aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~------~~~~~~p 166 (476)
T KOG0646|consen 105 LYLWELSSGILLNVLS-----------AHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSAD------NDHSVKP 166 (476)
T ss_pred EEEEEeccccHHHHHH-----------hhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccc------cCCCccc
Confidence 4678887776433332 367799999999999 899999999999999985321100 0001234
Q ss_pred cccccCCCccEEEEEEccCCC--eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021453 81 RHLIGKNNIHITGLAYSNTSE--LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 157 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s 157 (312)
...+..|.-+|+++...+.|. .|+++ .|.++++||+..+ .++..+... ..+.+++. +
T Consensus 167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----------------~LLlti~fp---~si~av~l-D 226 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----------------VLLLTITFP---SSIKAVAL-D 226 (476)
T ss_pred eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----------------eeeEEEecC---CcceeEEE-c
Confidence 444589999999999888753 67775 6999999999987 566665533 23899998 9
Q ss_pred CCCCEEEEeccCceEEEEeccCC----------------eeEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021453 158 PNDEYVMSGSDCGHLFIWKKKGG----------------KLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~~----------------~~~~~~~~~~~--~v~~v~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
|.+..++.|+.+|.|.+.++... ..+..+.+|.. .|+|++.+-||..|++|+.||.|+|||+
T Consensus 227 pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 227 PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 99999999999999999886532 23456678887 9999999999999999999999999999
Q ss_pred CCCC
Q 021453 220 MPTD 223 (312)
Q Consensus 220 ~~~~ 223 (312)
.+..
T Consensus 307 ~S~Q 310 (476)
T KOG0646|consen 307 YSKQ 310 (476)
T ss_pred chHH
Confidence 8765
No 126
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=4.5e-21 Score=150.32 Aligned_cols=176 Identities=15% Similarity=0.212 Sum_probs=139.6
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.|||.+-..+...+... ...|.++.|+|....+|+++++|+.|.+||+++......
T Consensus 169 i~IWD~~R~~Pv~smswG-----------~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K------------ 225 (433)
T KOG0268|consen 169 IDIWDEQRDNPVSSMSWG-----------ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK------------ 225 (433)
T ss_pred eeecccccCCccceeecC-----------CCceeEEecCCCcchheeeeccCCceEEEecccCCccce------------
Confidence 458888766655555543 346999999998878999999999999999998863211
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
+.. .-.-..|+|+|.+-.++++ .|..++.||++.-. .++..+.+|.+. |.+++| +|.
T Consensus 226 --Vi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---------------~p~~v~~dhvsA--V~dVdf-spt 283 (433)
T KOG0268|consen 226 --VIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---------------RPLNVHKDHVSA--VMDVDF-SPT 283 (433)
T ss_pred --eee--eccccceecCccccceeeccccccceehhhhhhc---------------ccchhhccccee--EEEecc-CCC
Confidence 111 2234578999976666666 59999999998753 577888899876 999999 999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
|+-+++|+.|.+|+||..+.+..-..+.. ....|.++.||-|.+++++||.|+.||+|....
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 99999999999999999987765443321 125799999999999999999999999998654
No 127
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.9e-19 Score=132.01 Aligned_cols=202 Identities=16% Similarity=0.230 Sum_probs=158.8
Q ss_pred CCCccceEEEEEcC---CCCcEEEEEe-CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021453 27 PMNSIRLNAIVIDP---RNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 102 (312)
Q Consensus 27 ~~h~~~v~~~~~~p---~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 102 (312)
..|.+.|..++|-. .+..+|++++ .|..|++-|...++ ..+.+.+|.+.|.++ ++=+|-+
T Consensus 133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~---------------~~~a~sghtghilal-yswn~~m 196 (350)
T KOG0641|consen 133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ---------------GFHALSGHTGHILAL-YSWNGAM 196 (350)
T ss_pred eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC---------------cceeecCCcccEEEE-EEecCcE
Confidence 46889999999953 3336777754 57777777877775 233338899999886 4446778
Q ss_pred EEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--c---CCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021453 103 LISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--R---NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 103 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
+++++ |.+|++||++-. .++.++... . ....|..++. .|.|++|++|..|....+||
T Consensus 197 ~~sgsqdktirfwdlrv~----------------~~v~~l~~~~~~~glessavaav~v-dpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVN----------------SCVNTLDNDFHDGGLESSAVAAVAV-DPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred EEccCCCceEEEEeeecc----------------ceeeeccCcccCCCcccceeEEEEE-CCCcceeeeccCCCceEEEE
Confidence 99974 999999999865 343333211 1 1134899998 99999999999999999999
Q ss_pred ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-----CCCChhhhhhhhccCCCCceeEEec
Q 021453 177 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-----LPDNAEKIMKANKQGREDHSRITLT 251 (312)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~s~~ 251 (312)
++.+++++.+..|...|.++.|+|...++++++.|..|++-|+++..... +.+|...++++. |++..-.+++.+
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r-wh~~d~sfisss 338 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR-WHPQDFSFISSS 338 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE-ecCccceeeecc
Confidence 99999999999999999999999999999999999999999998764322 335667776665 677777888999
Q ss_pred CCceEEEEEec
Q 021453 252 PDVIMHVLRLQ 262 (312)
Q Consensus 252 ~d~~i~i~~~~ 262 (312)
.|.+..+|.+.
T Consensus 339 adkt~tlwa~~ 349 (350)
T KOG0641|consen 339 ADKTATLWALN 349 (350)
T ss_pred CcceEEEeccC
Confidence 99999999753
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8e-20 Score=140.46 Aligned_cols=212 Identities=14% Similarity=0.168 Sum_probs=149.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLI 104 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~ 104 (312)
.+|..-|.++.|++.| +.+|+++.|++++|||..... ..+....-...|.+.|..+.|.+ -|+.+|
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDS-----------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCC-----------CceEEeeeEEecCCcEEEEEecCccccceEE
Confidence 4688999999999999 899999999999999975432 11122222378999999999976 467899
Q ss_pred Eec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCC-
Q 021453 105 SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG- 180 (312)
Q Consensus 105 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~- 180 (312)
+++ |+++.||.-.... .... -.......++...... |+++.| .|. |-.|++++.||.|+||+.-..
T Consensus 78 ~cS~Drtv~iWEE~~~~--~~~~-----~~~Wv~~ttl~Dsrss--V~DV~F-aP~hlGLklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKS--EEAH-----GRRWVRRTTLVDSRSS--VTDVKF-APKHLGLKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred EEecCCceeeeeecccc--cccc-----cceeEEEEEeecCCcc--eeEEEe-cchhcceEEEEeccCcEEEEEecCCcc
Confidence 975 9999999753110 0000 0111233445555544 999999 775 667899999999999984210
Q ss_pred -------------------e-----------------------------------------------eEEEeecCccceE
Q 021453 181 -------------------K-----------------------------------------------LVRLMVGDRHVVN 194 (312)
Q Consensus 181 -------------------~-----------------------------------------------~~~~~~~~~~~v~ 194 (312)
+ .+.++.+|+.+|+
T Consensus 148 nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~ 227 (361)
T KOG2445|consen 148 NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIR 227 (361)
T ss_pred ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcce
Confidence 0 0114456888999
Q ss_pred EEEEcCCC----CeEEEEeCCCcEEEccCCCCC---------------------CCCCCCChhhhhhhhccCCCCceeEE
Q 021453 195 QLEPHPHI----PMFATCGIEKTVKLWAPMPTD---------------------FPPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 195 ~v~~~p~~----~~l~t~~~d~~i~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
+++|.|+- ..||+++.|| |+||.+...+ +..+.+|...+.... |...+..|.+
T Consensus 228 di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~-wNmtGtiLsS 305 (361)
T KOG2445|consen 228 DISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR-WNMTGTILSS 305 (361)
T ss_pred eeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE-EeeeeeEEee
Confidence 99999963 3599999999 9999987411 122334555554443 5566889999
Q ss_pred ecCCceEEEEEec
Q 021453 250 LTPDVIMHVLRLQ 262 (312)
Q Consensus 250 ~~~d~~i~i~~~~ 262 (312)
.+.||.+|+|...
T Consensus 306 tGdDG~VRLWkan 318 (361)
T KOG2445|consen 306 TGDDGCVRLWKAN 318 (361)
T ss_pred cCCCceeeehhhh
Confidence 9999999999754
No 129
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.3e-19 Score=138.21 Aligned_cols=212 Identities=16% Similarity=0.188 Sum_probs=156.5
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCC-------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSD-------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS 100 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 100 (312)
.|.+.|..++-+|..+++|++...+ ..+.||.+....-.... .+. -++..+-..+-+.|.++.|.|++
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~---~tl--E~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS---STL--ECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc---chh--hHhhcCCHHHhCceeeEEEcCCC
Confidence 4788999999999988888887542 35788998743311000 001 12233333455689999999999
Q ss_pred CeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-----cccCCceeeEEEEecC--CCCEEEEeccCceEE
Q 021453 101 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-----GHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLF 173 (312)
Q Consensus 101 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~v~~~s~--~~~~l~~~~~dg~v~ 173 (312)
..+++-.|..|.+|++.... +....+. .+... .++-+| +| +++.+++. .|+++.
T Consensus 136 ~klasm~dn~i~l~~l~ess---------------~~vaev~ss~s~e~~~~--ftsg~W-spHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 136 DKLASMDDNNIVLWSLDESS---------------KIVAEVLSSESAEMRHS--FTSGAW-SPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CeeEEeccCceEEEEcccCc---------------chheeecccccccccce--eccccc-CCCCccceEEEe-CCCcEE
Confidence 99999889999999998762 1111111 12322 677778 66 57777665 589999
Q ss_pred EEeccCCeeEEEe-ecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEE
Q 021453 174 IWKKKGGKLVRLM-VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 174 iwd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
.||+++.++...+ .+|...|.++.|.|+.++ |++|+.||.|+|||.+..+ +..+++|...+...-+......++++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 9999998776665 478889999999999876 9999999999999998765 57888999988766544446788999
Q ss_pred ecCCceEEEEEecc
Q 021453 250 LTPDVIMHVLRLQR 263 (312)
Q Consensus 250 ~~~d~~i~i~~~~~ 263 (312)
++.|..+.+|....
T Consensus 277 ~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 277 GGSDSAVNLSCASS 290 (370)
T ss_pred cCCCceeEEEeccc
Confidence 99999999997543
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=157.00 Aligned_cols=197 Identities=18% Similarity=0.272 Sum_probs=161.9
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
+...|.+++-.. ..|++|+.+++|..|.+.+++ ...++....-++..++++.+|+++|.+ +
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~---------------~~~iL~Rftlp~r~~~v~g~g~~iaagsd 116 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGE---------------EDTILARFTLPIRDLAVSGSGKMIAAGSD 116 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCCCC---------------ccceeeeeeccceEEEEecCCcEEEeecC
Confidence 455677776644 589999999999999999875 222334446789999999999999987 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
|-.|++.++... ...+.+++|..+ |.++.| +|.+++||+.+-||.|++||+.++.+...+.
T Consensus 117 D~~vK~~~~~D~----------------s~~~~lrgh~ap--Vl~l~~-~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 117 DTAVKLLNLDDS----------------SQEKVLRGHDAP--VLQLSY-DPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred ceeEEEEecccc----------------chheeecccCCc--eeeeeE-cCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 889999999887 678899999977 999999 9999999999999999999999988766654
Q ss_pred cC--------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC-ChhhhhhhhccCCCCceeEEecCCceEE
Q 021453 188 GD--------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 188 ~~--------~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
+- ...+..++|+|++..++..+.|+.|++|+..+.+. ..+.. +....+....|++.+.++++++.++.|-
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEE
Confidence 31 34567899999999999999999999999888763 33332 3333367778999999999999999999
Q ss_pred EEEec
Q 021453 258 VLRLQ 262 (312)
Q Consensus 258 i~~~~ 262 (312)
|||.+
T Consensus 258 vWnv~ 262 (933)
T KOG1274|consen 258 VWNVD 262 (933)
T ss_pred EEecc
Confidence 99988
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=2.2e-19 Score=146.57 Aligned_cols=206 Identities=14% Similarity=0.151 Sum_probs=155.2
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|..-|.+++++... +.++||+. |.|+|||+....- ..|+..+. . ......|.++.+.|+|+-|+++
T Consensus 417 ~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~------k~PvsqLd---c-l~rdnyiRSckL~pdgrtLivGG 484 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN------KSPVSQLD---C-LNRDNYIRSCKLLPDGRTLIVGG 484 (705)
T ss_pred ccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCC------CCcccccc---c-cCcccceeeeEecCCCceEEecc
Confidence 377788899998877 78999876 8899999974321 11222111 0 1235668999999999966665
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.-.++.|||+... .+....+-.........++. +|+.+..+++..||.|.|||+.+...++.|
T Consensus 485 eastlsiWDLAap----------------TprikaeltssapaCyALa~-spDakvcFsccsdGnI~vwDLhnq~~Vrqf 547 (705)
T KOG0639|consen 485 EASTLSIWDLAAP----------------TPRIKAELTSSAPACYALAI-SPDAKVCFSCCSDGNIAVWDLHNQTLVRQF 547 (705)
T ss_pred ccceeeeeeccCC----------------CcchhhhcCCcchhhhhhhc-CCccceeeeeccCCcEEEEEcccceeeecc
Confidence 6889999999765 12111111111122556777 999999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
++|...+.|+..+++|..|-||+.|.+||-||++.+....-......++.+. .++.+.+++.|-.++.+.+.....
T Consensus 548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg-~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG-YCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc-cCCCccceeeecccCcEEEEecCC
Confidence 9999999999999999999999999999999999876433333455565554 677889999999999888876543
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=4.8e-18 Score=140.27 Aligned_cols=248 Identities=13% Similarity=0.104 Sum_probs=164.0
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++||+.+.+....+.. ...+.+++|+|++..++++++.++.|++||..+++...
T Consensus 13 v~~~d~~t~~~~~~~~~------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~------------- 67 (300)
T TIGR03866 13 ISVIDTATLEVTRTFPV------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG------------- 67 (300)
T ss_pred EEEEECCCCceEEEEEC------------CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE-------------
Confidence 57899887664443332 12356899999984445677889999999998876321
Q ss_pred cccccCCCccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
.+ ..+. .+..++|+|+++.+++ + .++.+++||+.+. +.+..+... .. +.+++| +|
T Consensus 68 -~~-~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~----------------~~~~~~~~~-~~--~~~~~~-~~ 124 (300)
T TIGR03866 68 -TL-PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR----------------KVLAEIPVG-VE--PEGMAV-SP 124 (300)
T ss_pred -ec-cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC----------------eEEeEeeCC-CC--cceEEE-CC
Confidence 11 1222 2457899999986654 4 4899999999875 444444422 22 678998 99
Q ss_pred CCCEEEEeccCc-eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCCC-CCCCCCh----
Q 021453 159 NDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDF-PPLPDNA---- 231 (312)
Q Consensus 159 ~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~-~~d~~i~iwd~~~~~~-~~~~~~~---- 231 (312)
++++++++..++ .+.+||..+++....+.. ...+..++|+|+++.++++ ..++.|++||+++++. ..+..+.
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 203 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH 203 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc
Confidence 999999888765 567789988877665543 2345789999999987544 4699999999988753 2221111
Q ss_pred -hhh-hhhhccCCCCcee-EEecCCceEEEEEecccCccce---------eEeecCCCccCCC-CCCCeEEEeecCCCC
Q 021453 232 -EKI-MKANKQGREDHSR-ITLTPDVIMHVLRLQRRQTLAY---------RERRYNAADFESD-EEEGETYLLGFSDSD 297 (312)
Q Consensus 232 -~~~-~~~~~~~~~~~~l-~s~~~d~~i~i~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 297 (312)
... .....+++++..+ ++...++.+.+||+.+...... ..+.|++..+... ..++.|.++|...+.
T Consensus 204 ~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 111 1122356666664 4556677899999865432211 2456677776654 456779999987765
No 133
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.2e-20 Score=167.38 Aligned_cols=207 Identities=14% Similarity=0.193 Sum_probs=164.1
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-ccCCCccEEEEEEccCCC-eEEE
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
-|.+.|..+.|++..+++||+|+.||.|.|||+..-+ .+.+. -....+.|.+++|+..-. +|++
T Consensus 114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------tP~~~~~~~~~~eI~~lsWNrkvqhILAS 179 (1049)
T KOG0307|consen 114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------TPFTPGSQAPPSEIKCLSWNRKVSHILAS 179 (1049)
T ss_pred ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------CCCCCCCCCCcccceEeccchhhhHHhhc
Confidence 4899999999999887899999999999999998754 11111 122467899999998764 7777
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCc---eEEEEeccC-
Q 021453 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCG---HLFIWKKKG- 179 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg---~v~iwd~~~- 179 (312)
+ .+|.+.|||++.. +.+..+..+.....+..++| +|+. ..|++++.|. .|.+||+|.
T Consensus 180 ~s~sg~~~iWDlr~~----------------~pii~ls~~~~~~~~S~l~W-hP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKK----------------KPIIKLSDTPGRMHCSVLAW-HPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred cCCCCCceeccccCC----------------CcccccccCCCccceeeeee-CCCCceeeeeecCCCCCceeEeeccccc
Confidence 6 4889999999987 56666666655444789999 6664 5566666544 599999885
Q ss_pred CeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021453 180 GKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~v~~~p~~-~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
..+++++.+|...|.++.|++.+ ++|++++.|+.|.+|+.+++++ ..++...++.....|...+...+...+.||.|.
T Consensus 243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 45678888999999999999987 6799999999999999999884 667766677766665555777888899999999
Q ss_pred EEEecccC
Q 021453 258 VLRLQRRQ 265 (312)
Q Consensus 258 i~~~~~~~ 265 (312)
|+.+....
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99987653
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=145.72 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=156.8
Q ss_pred ceEEEEEcCC------CCcEEEEEeCCCeEEEEEccCCeecC-CCCCCC---Ccc--cccccccccCCCccEEEEEEccC
Q 021453 32 RLNAIVIDPR------NPNYFAVGGSDEYARVYDIRKCHWYS-PISSDT---PVD--TFCPRHLIGKNNIHITGLAYSNT 99 (312)
Q Consensus 32 ~v~~~~~~p~------~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~---~~~--~~~~~~~~~~~~~~i~~~~~~~~ 99 (312)
.-.|++|... .++++|.|+.|..|.|||+.-...+. ....+. ... .-.......+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 3456666432 12799999999999999987332110 000000 000 00011222478999999999987
Q ss_pred CC-eEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEec
Q 021453 100 SE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 177 (312)
Q Consensus 100 ~~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~ 177 (312)
-+ +||+++ |.+|.+||+.++ ++.+++..|... |.++.|++...++|++|+.|++|.+.|.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g----------------~p~~s~~~~~k~--Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTG----------------KPKSSITHHGKK--VQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred cceeEEecCCCceEEEEEcCCC----------------CcceehhhcCCc--eeEEEecCCCceEEEeccccceEEeeec
Confidence 75 888875 999999999998 788888877755 9999997778999999999999999999
Q ss_pred cCCeeE-EEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021453 178 KGGKLV-RLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 178 ~~~~~~-~~~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
+..... ..++ ..+.|-.++|.|.... ++.+..||+|+-+|++... +.++..|...+-.+........++++++.+
T Consensus 317 R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 317 RDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred cCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence 843222 2333 4578999999998766 7777799999999998763 466677777774444344467889999999
Q ss_pred ceEEEEEecccCc
Q 021453 254 VIMHVLRLQRRQT 266 (312)
Q Consensus 254 ~~i~i~~~~~~~~ 266 (312)
+.+++|++...+.
T Consensus 396 ~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 396 KVVKLWKFDVDSP 408 (463)
T ss_pred ceEEEEeecCCCC
Confidence 9999999875543
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4.2e-19 Score=136.54 Aligned_cols=202 Identities=20% Similarity=0.198 Sum_probs=140.9
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
|..++.+++|.+. ..+++|+.||.|+.+|+.++.. ..+..|..+|.+|.+++....++++ -
T Consensus 53 ~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~----------------~~igth~~~i~ci~~~~~~~~vIsgsW 114 (323)
T KOG1036|consen 53 HGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE----------------DQIGTHDEGIRCIEYSYEVGCVISGSW 114 (323)
T ss_pred cCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc----------------eeeccCCCceEEEEeeccCCeEEEccc
Confidence 7889999999985 5899999999999999998751 2227899999999999876666666 5
Q ss_pred CCcEEEEEcCCCc-----------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021453 108 DELVYLFEKNMGL-----------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 108 d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~ 164 (312)
|++|++||.+... +.....+..+++.++..........-.-.++++++ -|++.=.+
T Consensus 115 D~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~-~pn~eGy~ 193 (323)
T KOG1036|consen 115 DKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL-VPNGEGYV 193 (323)
T ss_pred CccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE-ecCCCceE
Confidence 9999999998432 11222233344444332221111111123889998 67877788
Q ss_pred EeccCceEEEEeccCC----eeEEEeecCcc---------ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCC
Q 021453 165 SGSDCGHLFIWKKKGG----KLVRLMVGDRH---------VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDN 230 (312)
Q Consensus 165 ~~~~dg~v~iwd~~~~----~~~~~~~~~~~---------~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~ 230 (312)
+++-||.|.+=.++.. +....|+.|.. +|++++|||-...|+||+.||.|.+||+...+ +..+...
T Consensus 194 ~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 194 VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred EEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 9999999998776655 33445565542 79999999999999999999999999998875 5556544
Q ss_pred hhhhhhhhccCCCCceeEEe
Q 021453 231 AEKIMKANKQGREDHSRITL 250 (312)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~s~ 250 (312)
...+ ....++.++..|+.+
T Consensus 274 ~~SI-~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 274 ETSI-SSLSFSMDGSLLAIA 292 (323)
T ss_pred CCce-EEEEeccCCCeEEEE
Confidence 3334 223344444444443
No 136
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=2.9e-19 Score=136.36 Aligned_cols=206 Identities=14% Similarity=0.209 Sum_probs=156.2
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEEEe
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISY 106 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~ 106 (312)
|-+.|.|+.|.|++ ..+++-. |..|.+|++....-+ +... ....-..+....++-+|+| +|..+++.
T Consensus 122 avg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~--------vaev-~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 122 AVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKI--------VAEV-LSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred HhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcch--------heee-cccccccccceecccccCCCCccceEEEe
Confidence 55689999999987 5666654 889999999876521 1111 1111133566788889998 67899999
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE-ecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccC-CeeE
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKG-GKLV 183 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~-~~~~ 183 (312)
+|+++..||+++. +....+ ..|... |..+.| +|+.+ +|++|+.||.|++||.+. ..++
T Consensus 191 ~d~tl~~~D~RT~----------------~~~~sI~dAHgq~--vrdlDf-Npnkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 191 SDSTLQFWDLRTM----------------KKNNSIEDAHGQR--VRDLDF-NPNKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred CCCcEEEEEccch----------------hhhcchhhhhcce--eeeccC-CCCceEEEEEcCCCccEEEEeccCCCccc
Confidence 9999999999986 333333 345544 999999 77755 578999999999999874 5678
Q ss_pred EEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCC------------------------------CCCCCCCCChh
Q 021453 184 RLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMP------------------------------TDFPPLPDNAE 232 (312)
Q Consensus 184 ~~~~~~~~~v~~v~~~p~~~-~l~t~~~d~~i~iwd~~~------------------------------~~~~~~~~~~~ 232 (312)
..+.+|...|.+|.|+|... ++++++.|..|.+|...+ +.+.++..|..
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 99999999999999999765 588999999999996431 12335556788
Q ss_pred hhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 233 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.++.+.|.+.+.-++++.+.||.+.|=++.+.
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 88888877778888899999999888766543
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=7.6e-19 Score=147.13 Aligned_cols=257 Identities=8% Similarity=0.054 Sum_probs=170.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
..|...|.++.|.| +..+|++++.|.++++||+.+.+++ -..+..+|...+.+++|+|... .+++
T Consensus 97 ~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~-------------G~~~~~GH~~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLV-------------GGRLNLGHTGSVKSECFMPTNPAVFCT 162 (720)
T ss_pred ccccceeEeeccCC-CceeEEEccCCceeeeeeeccceee-------------cceeecccccccchhhhccCCCcceee
Confidence 46999999999999 6589999999999999999988753 1123479999999999999886 6777
Q ss_pred e-cCCcEEEEEcCCCcCC----CCCcCCcc--c-ccCC----CCCceEecccCC--ceeeEEEEecCCCCEEEEecc-Cc
Q 021453 106 Y-NDELVYLFEKNMGLGP----SPLSLSPE--D-LQKR----EEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSD-CG 170 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~----~~~~~~~~--~-~~~~----~~~~~~~~~~~~--~~v~~v~~~s~~~~~l~~~~~-dg 170 (312)
| .||.|.|||++-.... ....+... . .... +.+..-..+... ..|+.+.| .|...|++++. |+
T Consensus 163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~ 240 (720)
T KOG0321|consen 163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADS 240 (720)
T ss_pred ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCc
Confidence 6 5999999999754200 00000000 0 0000 011111122211 12445544 78888998888 99
Q ss_pred eEEEEeccCCeeEE--------EeecC---ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC---CCCChhhh-h
Q 021453 171 HLFIWKKKGGKLVR--------LMVGD---RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP---LPDNAEKI-M 235 (312)
Q Consensus 171 ~v~iwd~~~~~~~~--------~~~~~---~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~---~~~~~~~~-~ 235 (312)
.|+|||++...... .+..| .-.++++.....|.+|.+.+.|+.|.+|++.+..+.. +.++...- +
T Consensus 241 ~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~ 320 (720)
T KOG0321|consen 241 TIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY 320 (720)
T ss_pred ceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceee
Confidence 99999998654322 12223 2357788888889998777789999999998876433 33333222 2
Q ss_pred hhhccCCCCceeEEecCCceEEEEEecccCccce-----------eEeec-CCCccCCCCCCCeEEEeecCCCCCC
Q 021453 236 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY-----------RERRY-NAADFESDEEEGETYLLGFSDSDAS 299 (312)
Q Consensus 236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 299 (312)
.....++++.++++++.|....+|.+........ ..+.+ ....++...++-++-+|++.++-++
T Consensus 321 vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 321 VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence 2233566899999999999999999876532211 12222 2344455578888999999665433
No 138
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=2.7e-19 Score=153.93 Aligned_cols=197 Identities=13% Similarity=0.130 Sum_probs=161.2
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 109 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~ 109 (312)
..+++++.++-| ++.+.|.+.|.|-+|++++|-.... |. --..|..+|++++...-++.++++ .+|
T Consensus 449 ~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~s---------f~---~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 449 INATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKS---------FG---DSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred cceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecc---------cc---cCccccCceeEEEecCCCceEEEccCcc
Confidence 568999999999 8999999999999999999863321 10 115789999999998888888885 699
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
.+.+||..+. .+...+.-. . .+.++.+ +.....++.+..|-.|+++|..+.+.++.+.+|
T Consensus 516 ilkfw~f~~k----------------~l~~~l~l~-~--~~~~iv~-hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh 575 (910)
T KOG1539|consen 516 ILKFWDFKKK----------------VLKKSLRLG-S--SITGIVY-HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH 575 (910)
T ss_pred eEEEEecCCc----------------ceeeeeccC-C--Ccceeee-eehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence 9999999876 344444322 2 2777777 677888999999999999999999999999999
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC-ceEEEEEe
Q 021453 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-VIMHVLRL 261 (312)
Q Consensus 190 ~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~i~~~ 261 (312)
...|++++|||+|+++++++.|++||+||+.++.+.... +.........++|++.+|++...| .-|++|.-
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 999999999999999999999999999999998753332 233344556688999999999988 78999963
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.9e-18 Score=131.26 Aligned_cols=153 Identities=14% Similarity=0.187 Sum_probs=123.5
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
...|.++.|+|.. +.|++++.||++++|++....+... ..|..++.+.+|.++.+.+..+.||
T Consensus 13 ~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~----------------~~~~~plL~c~F~d~~~~~~G~~dg 75 (323)
T KOG1036|consen 13 EDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLK----------------FKHGAPLLDCAFADESTIVTGGLDG 75 (323)
T ss_pred hhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhh----------------eecCCceeeeeccCCceEEEeccCc
Confidence 5689999999988 6778888999999999987642111 4578899999999876666666799
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
.|+.+|+.++ ....+..|... +.++.+ .+....+++|+.|++|++||.+...++..+...
T Consensus 76 ~vr~~Dln~~-----------------~~~~igth~~~--i~ci~~-~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~ 135 (323)
T KOG1036|consen 76 QVRRYDLNTG-----------------NEDQIGTHDEG--IRCIEY-SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG 135 (323)
T ss_pred eEEEEEecCC-----------------cceeeccCCCc--eEEEEe-eccCCeEEEcccCccEEEEeccccccccccccC
Confidence 9999999986 33445567655 999999 788889999999999999999986666555533
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 190 ~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
..|.++.. .++.|+.|+.|..+.+||++..
T Consensus 136 -kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 136 -KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred -ceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 47877765 6778999999999999999853
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=3.7e-18 Score=139.53 Aligned_cols=258 Identities=11% Similarity=0.093 Sum_probs=184.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+.+|+++.+...+..-..... -+..|.|++|.+++ -++||.++|.|.||+..+.+ ..
T Consensus 224 ~~Fw~~~~~~l~k~~~~fek~-------ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~--------------~~ 280 (626)
T KOG2106|consen 224 LYFWTLRGGSLVKRQGIFEKR-------EKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNR--------------IS 280 (626)
T ss_pred EEEEEccCCceEEEeeccccc-------cceEEEEEEEcCCC--CEEeecCCceEEEEeCCCce--------------EE
Confidence 357887766543332222111 13679999999998 58999999999999997765 34
Q ss_pred cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCccc-------------------------ccCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED-------------------------LQKR 135 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~ 135 (312)
+.. ..|.+.|.+++...+|.+|..+.|..|..||-. ........++... ....
T Consensus 281 k~~-~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 281 KQV-HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred eEe-eecCCceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 444 389999999999999998884569999999932 2111111111111 0111
Q ss_pred CCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEE
Q 021453 136 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 215 (312)
Q Consensus 136 ~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~ 215 (312)
.......+|... ...++. +|+.+++++++.|+.+++|+ ..+++-... -..++.++.|+|.| .+|.|...|..-
T Consensus 359 ~f~~~v~gh~de--lwgla~-hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 359 GFTLTVQGHGDE--LWGLAT-HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred CceEEEEecccc--eeeEEc-CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEE
Confidence 223334567655 888888 89999999999999999999 345444333 34678899999999 999999999999
Q ss_pred EccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC------------ccceeEeecCCCccCCCC
Q 021453 216 LWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ------------TLAYRERRYNAADFESDE 283 (312)
Q Consensus 216 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~------------~~~~~~~~~~~~~~~~~~ 283 (312)
+.|.+++...++... +..+....+++++.+++.++.|+.|+++.+.... .+....++++.+.+.+..
T Consensus 432 V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 432 VLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred EEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 999999776555534 5556778899999999999999999999886542 222236677777777766
Q ss_pred CCCeEEEe
Q 021453 284 EEGETYLL 291 (312)
Q Consensus 284 ~~~~v~~~ 291 (312)
.+-.++.|
T Consensus 511 ~d~eiLyW 518 (626)
T KOG2106|consen 511 GDYEILYW 518 (626)
T ss_pred CceEEEEE
Confidence 66556666
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=4.4e-19 Score=144.66 Aligned_cols=253 Identities=13% Similarity=0.079 Sum_probs=183.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
++|||..+......+..++.. -.+.++.|+..+--.+++.+.|..+++|.-.... - +...
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~---------pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~-~----------~Vp~ 73 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAE---------PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT-P----------EVPR 73 (673)
T ss_pred eEEeecccccCccccccCCCC---------CcceeeeccccceEEEeecCCceeEEEecccCCC-C----------ccce
Confidence 578998877766666665544 2489999998762223334678889998755331 0 0011
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
.. ....+.-.|++......+++++ ..+.|+|||++.. .+.+.+++|... |+++.| +-.
T Consensus 74 ~~--k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----------------l~hr~lkdh~st--vt~v~Y-N~~ 132 (673)
T KOG4378|consen 74 VR--KLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK----------------LIHRFLKDHQST--VTYVDY-NNT 132 (673)
T ss_pred ee--ccccchHHHHhhhhcceeeeccCcCceeeehhhHHH----------------HHhhhccCCcce--eEEEEe-cCC
Confidence 11 1112233455555555788886 5999999999875 566788899865 999999 889
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-CCC-CCChhhhh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-PPL-PDNAEKIM 235 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-~~~-~~~~~~~~ 235 (312)
..||++++..|.|.|..+.++.....|.... ..|.-+.|+|..+. |.+++.+|.|.+||..+... ..+ ..|..+.
T Consensus 133 DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~- 211 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC- 211 (673)
T ss_pred cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc-
Confidence 9999999999999999999998888887543 45668999999887 77889999999999998864 333 3344444
Q ss_pred hhhccCC-CCceeEEecCCceEEEEEecccC---------ccceeEeecCCCccCCCCCCCeEEEeecCC
Q 021453 236 KANKQGR-EDHSRITLTPDVIMHVLRLQRRQ---------TLAYRERRYNAADFESDEEEGETYLLGFSD 295 (312)
Q Consensus 236 ~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 295 (312)
.-.++++ +..++++.+.|..|.++|+.... .+.-..+.+++..+..+...|++|.+|...
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 4444565 67789999999999999987542 222237788899999999999999998743
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=5.6e-19 Score=149.96 Aligned_cols=217 Identities=18% Similarity=0.273 Sum_probs=165.2
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC---CeEEE
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s 105 (312)
-+.++.+++.+|++ +.||+|..-|.+++|++...+. ...+..|...|.++.|+..- ++||+
T Consensus 458 ~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred cccceEEEEECCCc-ceecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCchhhhHhhhh
Confidence 45689999999999 8999999999999999997652 22237899999999998643 58888
Q ss_pred e-cCCcEEEEEcCCCcCCC------CCcCCc-----cc------------------ccCCCCCceEeccc---CCceeeE
Q 021453 106 Y-NDELVYLFEKNMGLGPS------PLSLSP-----ED------------------LQKREEPQVYSGHR---NSQTVKG 152 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~------~~~~~~-----~~------------------~~~~~~~~~~~~~~---~~~~v~~ 152 (312)
+ .|..|.+||+....... ..++.. .+ .++..-...|..|. ....+..
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence 7 49999999997553110 000000 00 11101111121111 1123778
Q ss_pred EEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCC
Q 021453 153 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP 228 (312)
Q Consensus 153 v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~ 228 (312)
++. .|..+++++++.|..|+||++.+++..+.|++ |.+..-.+...|.|.|+|+.+.|+++.++|..+++. ..+.
T Consensus 602 m~V-dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 602 MAV-DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred eee-CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 887 88999999999999999999999999999974 556777899999999999999999999999998874 7778
Q ss_pred CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 229 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+|...+ +-..+.++-.-|++.+.|+.|.+|.+..
T Consensus 681 GHsE~V-TG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 681 GHSEAV-TGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred Ccchhe-eeeeecccchhheeecCCceEEEEECch
Confidence 888777 4455888899999999999999998754
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.82 E-value=8e-18 Score=145.05 Aligned_cols=141 Identities=12% Similarity=0.149 Sum_probs=112.7
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-
Q 021453 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF- 224 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~- 224 (312)
.+++++. ++.|++.+.|...|.|-+|++.+|-....+ +.|.++|++++....++.+++++.+|.+++||.....+
T Consensus 450 ~~~av~v-s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 450 NATAVCV-SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred ceEEEEE-eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 4888988 899999999999999999999999888887 58999999999999999999999999999999764321
Q ss_pred -----------------------------------------CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 225 -----------------------------------------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 225 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
..+.+|.+.+ ....++++++++++.+.|++|++||+.+
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri-td~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI-TDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce-eeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 1223455555 3444789999999999999999999877
Q ss_pred cCcc---------ceeEeecCCCccCC-CCCCCeEEEe
Q 021453 264 RQTL---------AYRERRYNAADFES-DEEEGETYLL 291 (312)
Q Consensus 264 ~~~~---------~~~~~~~~~~~~~~-~~~~~~v~~~ 291 (312)
.... ....++|++..++. |.+...||.|
T Consensus 608 ~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 608 GTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 6432 33477888888775 3444556666
No 144
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=9.8e-19 Score=133.61 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=135.1
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
+.+..+++++.|+.-+++++.+.+-|-+..|||++++.. ..+++.+..|...|..++|...+. ++|+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------~~vkTQLIAHDKEV~DIaf~~~s~~~FAS 214 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------GTVKTQLIAHDKEVYDIAFLKGSRDVFAS 214 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------cceeeEEEecCcceeEEEeccCccceEEE
Confidence 447899999999998889999999999999999998731 134555588999999999999775 7777
Q ss_pred -ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-ceEEEEeccC-Cee
Q 021453 106 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-GHLFIWKKKG-GKL 182 (312)
Q Consensus 106 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-g~v~iwd~~~-~~~ 182 (312)
|.||.+++||++... .....++......+...++|...+.+++|+-..| ..|.|.|++. +.+
T Consensus 215 vgaDGSvRmFDLR~le---------------HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 215 VGADGSVRMFDLRSLE---------------HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred ecCCCcEEEEEecccc---------------cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence 469999999998752 2333344333234588999955567788776554 4689999884 567
Q ss_pred EEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCC
Q 021453 183 VRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~-~l~t~~~d~~i~iwd~~~~ 222 (312)
+..+++|.+.|+.++|.|... .++|++.|..+-+||+...
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 889999999999999999875 5999999999999998753
No 145
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=7.8e-19 Score=139.30 Aligned_cols=207 Identities=14% Similarity=0.083 Sum_probs=150.1
Q ss_pred ccccCCCccEEEEEEccCC-CeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 82 HLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~-~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
.+..+|..+|..++|+|.. ..||+|+ |.+|.||.+..+....... +++..+.+|... |..+.|+...
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------epvv~L~gH~rr--Vg~V~wHPtA 143 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------EPVVELYGHQRR--VGLVQWHPTA 143 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc---------cceEEEeeccee--EEEEeecccc
Confidence 3448999999999999976 4788875 9999999997652111111 567788999865 9999995556
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC-CCCCChhhhhhhh
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~ 238 (312)
.+.|++++.|.+|.+|++.+|+.+..+. |...|+++.|+-+|.+|+|.+.|+.|||||.+++++. .-.+|...-...+
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 7889999999999999999999988887 9999999999999999999999999999999999853 2335555444444
Q ss_pred ccCCCCceeEEec---CCceEEEEEecccCcccee-Ee-ecCCCccC-CCCCCCeEEEeecCCCCCCC
Q 021453 239 KQGREDHSRITLT---PDVIMHVLRLQRRQTLAYR-ER-RYNAADFE-SDEEEGETYLLGFSDSDASS 300 (312)
Q Consensus 239 ~~~~~~~~l~s~~---~d~~i~i~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 300 (312)
.|-.++.++.+|- .+.++-+|+-..-+.+.-. +. ..++.-++ .+++...||+++=-|++...
T Consensus 223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred EEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEE
Confidence 4555666444433 3477888875554433222 11 11222222 35667778888766665443
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=2e-19 Score=139.50 Aligned_cols=218 Identities=15% Similarity=0.149 Sum_probs=152.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||...|+.+.|+|..++++++++.|.+||+|++++..++ +...-..+|.+.|.++.|+++|.+++++
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv------------~VfGG~egHrdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV------------AVFGGVEGHRDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE------------EEecccccccCcEEEEEEcCCCCeeecc
Confidence 4799999999999999999999999999999999998854 2222237899999999999999999996
Q ss_pred -cCCcEEEEEcCCCcCCCCCcC--Cccc------ccCC-CCCc---eEecccCCceeeEEEEecCCCCEEEEeccCceEE
Q 021453 107 -NDELVYLFEKNMGLGPSPLSL--SPED------LQKR-EEPQ---VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 173 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~--~~~~------~~~~-~~~~---~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~ 173 (312)
.|.+|.+|++....-...... .... +.+. ...- +-.-|. .+|-|+.|+ |+++++-+-++.|.
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr--nyVDCvrw~---gd~ilSkscenaI~ 274 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR--NYVDCVRWF---GDFILSKSCENAIV 274 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc--chHHHHHHH---hhheeecccCceEE
Confidence 599999999984421111100 0000 0000 0011 112344 347888874 78999999999999
Q ss_pred EEec-cCCee-------------EEEeecCccceEEE--EEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC----Chhh
Q 021453 174 IWKK-KGGKL-------------VRLMVGDRHVVNQL--EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD----NAEK 233 (312)
Q Consensus 174 iwd~-~~~~~-------------~~~~~~~~~~v~~v--~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~----~~~~ 233 (312)
.|-. +-.+. +..+.-....|.-+ +|.|-+++||.|...|.|.+||++..+...... ....
T Consensus 275 ~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~ 354 (385)
T KOG1034|consen 275 CWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGS 354 (385)
T ss_pred EEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccc
Confidence 9986 21111 22333233445444 456778899999999999999999876532221 2233
Q ss_pred hhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 234 IMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.+.-..++.++.+|+....|+++.-||.
T Consensus 355 tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 355 TVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 4555667889999999999999888873
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.5e-19 Score=160.51 Aligned_cols=209 Identities=16% Similarity=0.166 Sum_probs=160.0
Q ss_pred cceEEEEEcCCCCc---EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe
Q 021453 31 IRLNAIVIDPRNPN---YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~ 106 (312)
.+-+.++|.+.+.. +|+.|..||.|-+||...-.- . ..+........|.+.|..+.|++... +||+|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----~-----~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----N-----ASEEVLATKSKHTGPVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc----C-----cchHHHhhhcccCCceeeeeccccCCceeecc
Confidence 46789999987754 589999999999999875310 0 00011122267999999999999875 89997
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+||.|.|||+.+. +....+........|.+++|.......|++++.+|.+.|||++..+++..
T Consensus 136 a~~geI~iWDlnn~----------------~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ 199 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKP----------------ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK 199 (1049)
T ss_pred CCCCcEEEeccCCc----------------CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc
Confidence 6999999999875 22222222222234999999544567889999999999999998888877
Q ss_pred eecCcc--ceEEEEEcCCCCe-EEEEeCC---CcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021453 186 MVGDRH--VVNQLEPHPHIPM-FATCGIE---KTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 186 ~~~~~~--~v~~v~~~p~~~~-l~t~~~d---~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
+..+.. .+..++|||+... +++++.| -.|.+||++.-. ++.+.+|...++...|...|.+++++.+.|+.+.
T Consensus 200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII 279 (1049)
T ss_pred cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence 765543 5789999999865 6666654 369999988654 5777889999999987777889999999999999
Q ss_pred EEEeccc
Q 021453 258 VLRLQRR 264 (312)
Q Consensus 258 i~~~~~~ 264 (312)
.|+.+++
T Consensus 280 ~wN~~tg 286 (1049)
T KOG0307|consen 280 CWNPNTG 286 (1049)
T ss_pred EecCCCc
Confidence 9998774
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.4e-19 Score=149.19 Aligned_cols=228 Identities=15% Similarity=0.223 Sum_probs=166.7
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc---------------------------
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--------------------------- 79 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--------------------------- 79 (312)
.||.+.|.+++.+|.| ..|++|+.||+|+||.+.++.++...+.+..++...
T Consensus 397 rGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred eccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 5899999999999988 899999999999999999998875433222111000
Q ss_pred ----------------------------cc---------ccccCCCccEEEEEEccCCCeEEEec----CCcEEEEEcCC
Q 021453 80 ----------------------------PR---------HLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNM 118 (312)
Q Consensus 80 ----------------------------~~---------~~~~~~~~~i~~~~~~~~~~~l~s~~----d~~i~iwd~~~ 118 (312)
.. .+...|...|..+.|+..|.+|++.. ...|.|+++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 00 11234677899999999999999842 45789999876
Q ss_pred CcCCCCC-------------------------cCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEE
Q 021453 119 GLGPSPL-------------------------SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 173 (312)
Q Consensus 119 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~ 173 (312)
.....+. .+.+.++.++.+++.+.... ..|..++. +|.|.-|+.|+.|+.+.
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~--kwiS~msi-hp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS--KWISSMSI-HPNGDNLILGSYDKKMC 632 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC--eeeeeeee-cCCCCeEEEecCCCeeE
Confidence 5522111 11222233333333333222 45889998 89999999999999999
Q ss_pred EEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-------CCC---CCCCCCChhh----hhhhh
Q 021453 174 IWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-------PTD---FPPLPDNAEK----IMKAN 238 (312)
Q Consensus 174 iwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~-------~~~---~~~~~~~~~~----~~~~~ 238 (312)
.+|+.- .++.+.++.|...+++|+||+.-++|++|+.||++.|+--. ... +..+++|... ++..
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~- 711 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT- 711 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee-
Confidence 999874 46788889999999999999999999999999999998522 222 3455666554 4443
Q ss_pred ccCCCCceeEEecCCceEEEE
Q 021453 239 KQGREDHSRITLTPDVIMHVL 259 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~ 259 (312)
.|++...+|++++.|+++++|
T Consensus 712 ~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 712 IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccCCCceEEecCCCceEEee
Confidence 488889999999999999998
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=8.3e-19 Score=146.92 Aligned_cols=244 Identities=13% Similarity=0.145 Sum_probs=159.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCC---------CC
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI---------SS 71 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------~~ 71 (312)
+++||+........-. +-||...|.+++|.|.++..|++|+.||.|.|||++-..+.... ..
T Consensus 124 ~r~Wdvk~s~l~G~~~---------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n 194 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRL---------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHN 194 (720)
T ss_pred eeeeeeccceeeccee---------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcccc
Confidence 5788888776544421 13589999999999999999999999999999999744311100 00
Q ss_pred C--CCcccccc-cccccCCCccEEE---EEEccCCCeEEEe-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCc--eE
Q 021453 72 D--TPVDTFCP-RHLIGKNNIHITG---LAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ--VY 141 (312)
Q Consensus 72 ~--~~~~~~~~-~~~~~~~~~~i~~---~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~ 141 (312)
. .+...... ..-...+...|.+ +.+..|...||++ . |+.|++||++.......+ +... .+
T Consensus 195 ~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~----------ep~~~~~~ 264 (720)
T KOG0321|consen 195 TAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ----------EPRGSDKY 264 (720)
T ss_pred CCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc----------CCCcccCc
Confidence 0 11110000 0011234444554 5555677777774 4 999999999876311110 1111 11
Q ss_pred ecccC-CceeeEEEEecCCCCEEEEeccCceEEEEeccCC--eeEEEeecCcc-ce-EEEEEcCCCCeEEEEeCCCcEEE
Q 021453 142 SGHRN-SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRH-VV-NQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 142 ~~~~~-~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~-~v-~~v~~~p~~~~l~t~~~d~~i~i 216 (312)
..+.. ...+.++.. +..|.+|++.+.|+.|++|++.+- .++..+.++.. .. ..-..+|++.++++|+.|....+
T Consensus 265 ~t~skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayi 343 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYI 343 (720)
T ss_pred cCcccceeeeEEEEe-cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceee
Confidence 12210 111566665 677899888888999999998753 23444443321 11 12346899999999999999999
Q ss_pred ccCCCCCC--CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 217 WAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 217 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
|.+...+. ..+.+|...+....|.+.+..-+++++.|..+++|++..+
T Consensus 344 w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 344 WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99988763 5567888888777766667777888899999999998554
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=1e-17 Score=138.32 Aligned_cols=198 Identities=8% Similarity=0.056 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C-Cc
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D-EL 110 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d-~~ 110 (312)
+..++|+|++..+++++..++.+++||+.+.+.+.. + . +...+..++|+|++++++++. + ..
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~--------------~-~-~~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE--------------I-P-VGVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE--------------e-e-CCCCcceEEECCCCCEEEEEecCCCe
Confidence 467899999843445556789999999987653211 1 1 123357899999999888764 4 45
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCeeEEEeecC
Q 021453 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
+.+||..++ +....... ... ...++| ++++++|+++ ..++.|++||+.+++.+..+..+
T Consensus 139 ~~~~d~~~~----------------~~~~~~~~-~~~--~~~~~~-s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 139 AHFIDTKTY----------------EIVDNVLV-DQR--PRFAEF-TADGKELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred EEEEeCCCC----------------eEEEEEEc-CCC--ccEEEE-CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 778898765 33333222 222 567888 8999988554 56999999999999877766422
Q ss_pred c-----c--ceEEEEEcCCCCeEE-EEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEe-cCCceEEEEE
Q 021453 190 R-----H--VVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITL-TPDVIMHVLR 260 (312)
Q Consensus 190 ~-----~--~v~~v~~~p~~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~i~~ 260 (312)
. . ....++|+|++++++ +.+.++.|.+||+++++......+...+ ....+++++.+++++ ..++.|++||
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRV-WQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCc-ceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 1 1 234688999999854 4456778999999877653221122223 344577888888775 5689999999
Q ss_pred ecccCcc
Q 021453 261 LQRRQTL 267 (312)
Q Consensus 261 ~~~~~~~ 267 (312)
+......
T Consensus 278 ~~~~~~~ 284 (300)
T TIGR03866 278 VAALKVI 284 (300)
T ss_pred CCCCcEE
Confidence 8876543
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=1.5e-18 Score=146.60 Aligned_cols=222 Identities=15% Similarity=0.183 Sum_probs=166.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
+||.+.|++++|+|.| .+|++.+.|.+-|++-.-..+. . +.......-|...++|++|-+....++++
T Consensus 358 SGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~--------~---wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQ--------E---WHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred ccccccceeeeecCCC-CEEEEeccccceeeeccccccc--------c---eeeecccccccccceeeehccCCceeeec
Confidence 6899999999999999 7999999999999987652220 0 11111225578889999999866677776
Q ss_pred -cCCcEEEEEcCCCc--------C---------C-----------CCCcCC---c---c---------------------
Q 021453 107 -NDELVYLFEKNMGL--------G---------P-----------SPLSLS---P---E--------------------- 130 (312)
Q Consensus 107 -~d~~i~iwd~~~~~--------~---------~-----------~~~~~~---~---~--------------------- 130 (312)
..+.+|+|+..... + + +.-.++ . .
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 57888999975332 0 0 000000 0 0
Q ss_pred -c----ccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-----CceEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021453 131 -D----LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 200 (312)
Q Consensus 131 -~----~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p 200 (312)
+ ..-...++.+.||... |.+++. +|+++++++++. ...|++|+..+...+..+.+|.-.|+.++|||
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred HHHHHHhccchhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 0 1112334556688866 999998 999999999875 34699999998888889999999999999999
Q ss_pred CCCeEEEEeCCCcEEEccCCCCCC-----CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 201 HIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 201 ~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
++++|++.|.|+++.+|....... .....|..-+..+. |++++.+++|++.|..+++|.....
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs-W~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS-WSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc-cCcccceeEEecCCceEEEEeccCc
Confidence 999999999999999999754432 22456666666555 7888888999999999999987654
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=1.9e-17 Score=128.63 Aligned_cols=239 Identities=14% Similarity=0.222 Sum_probs=170.5
Q ss_pred CCccceEEEEEcC----CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC---
Q 021453 28 MNSIRLNAIVIDP----RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--- 100 (312)
Q Consensus 28 ~h~~~v~~~~~~p----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 100 (312)
+|..+|..++|++ +.+..+++++. ..+.+|.....-.+ +.+. ...-..|.+....++|+-+.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~i---------r~lq-~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGI---------RLLQ-SYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccce---------eeee-eccCCCCCcceEEEEEEecCCCC
Confidence 4788999999985 44467777765 56888887643211 1111 11112466777788887643
Q ss_pred C-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021453 101 E-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 178 (312)
Q Consensus 101 ~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~ 178 (312)
. ++|.+ .-|.|+|.|+.++ +....+.+|... |..+.+++...+++++++.|..|++|+++
T Consensus 105 ~p~la~~G~~GvIrVid~~~~----------------~~~~~~~ghG~s--INeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG----------------QCSKNYRGHGGS--INEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CeeEEeecceeEEEEEecchh----------------hhccceeccCcc--chhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 3 66665 6999999999988 788999999977 99999954456899999999999999999
Q ss_pred CCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-------C---------CCC-----------
Q 021453 179 GGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-------P---------PLP----------- 228 (312)
Q Consensus 179 ~~~~~~~~---~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-------~---------~~~----------- 228 (312)
+..++..+ .+|...|.++.|++++..+++++.|.+|++|++...+. . .++
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 99999887 47999999999999999999999999999999883221 0 011
Q ss_pred --CChhhhhhhhccCCCCceeEEecCCceEEEEEecc-cC----------------------cccee---EeecCCCccC
Q 021453 229 --DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR-RQ----------------------TLAYR---ERRYNAADFE 280 (312)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~-~~----------------------~~~~~---~~~~~~~~~~ 280 (312)
.|.+.+ .++.|- ++++++-+-++.|..|.... .+ ..+|. .+.+....++
T Consensus 247 ~diHrnyV-DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 247 TDIHRNYV-DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred cccccchH-HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 011111 222111 46888888889999997511 10 00111 4445556778
Q ss_pred CCCCCCeEEEeecCCCCC
Q 021453 281 SDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 281 ~~~~~~~v~~~~~~~~~~ 298 (312)
.+.+.|.||++|++..+.
T Consensus 324 ~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hccCCCcEEEEECCCCCC
Confidence 888999999999977654
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=7.7e-19 Score=135.61 Aligned_cols=233 Identities=7% Similarity=0.066 Sum_probs=161.1
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc-
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC- 79 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 79 (312)
|-+||+.+.+..+++. +|..+|++++||++| +.|+|++.|..|.+||+..+.+...+..+.|+....
T Consensus 47 vvI~D~~T~~iar~ls-----------aH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~ 114 (405)
T KOG1273|consen 47 VVIYDFDTFRIARMLS-----------AHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQW 114 (405)
T ss_pred EEEEEccccchhhhhh-----------ccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEEEccCccceeee
Confidence 3467776665444444 488899999999999 899999999999999999998776666555552211
Q ss_pred --------ccccccC----------------------CCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCC
Q 021453 80 --------PRHLIGK----------------------NNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLS 128 (312)
Q Consensus 80 --------~~~~~~~----------------------~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 128 (312)
...++.. -........|.+.|+++.+| +.|.+.+++..+-
T Consensus 115 hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~--------- 185 (405)
T KOG1273|consen 115 HPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL--------- 185 (405)
T ss_pred ccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh---------
Confidence 0000000 00111122367778899987 6999999999886
Q ss_pred cccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC-------Cee--EEEee--cCccceEEEE
Q 021453 129 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-------GKL--VRLMV--GDRHVVNQLE 197 (312)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~-------~~~--~~~~~--~~~~~v~~v~ 197 (312)
+++..++-... ..|.++-+ +..|++|+.-+.|..|+.|+++. +++ ...++ ..+-.-.+++
T Consensus 186 -------e~vas~rits~-~~IK~I~~-s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 186 -------ECVASFRITSV-QAIKQIIV-SRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred -------eeeeeeeechh-eeeeEEEE-eccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 67777765541 23889998 89999999999999999999762 111 11111 0122335788
Q ss_pred EcCCCCeEEEEe-CCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 198 PHPHIPMFATCG-IEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 198 ~~p~~~~l~t~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
|+.+|.|+++++ ....++||.-..+.+ +.+.+.....+....|++-...+++. ..|.+++|.....
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 999999977766 556899999998886 45555554444444567766667666 7889999986543
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=9.8e-18 Score=135.41 Aligned_cols=233 Identities=13% Similarity=0.082 Sum_probs=159.7
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
+|..+|.++.|+|.+...+++.+.||+|++-|+....... +... ........++.|+.+...++. .
T Consensus 232 ~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~------------v~s~-~~d~~~fs~~d~~~e~~~vl~~~ 298 (498)
T KOG4328|consen 232 PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE------------VLSL-DTDNIWFSSLDFSAESRSVLFGD 298 (498)
T ss_pred cCCccccceEecCCChhheeeeccCceeeeeeecchhhHH------------Hhhc-CccceeeeeccccCCCccEEEee
Confidence 3899999999999888999999999999999998765210 1111 123455677888877765444 4
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCe----
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK---- 181 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~---- 181 (312)
.-|.+.+||++++. .....+.-|... |+++++ +|- ..+|++++.|++++|||++.-.
T Consensus 299 ~~G~f~~iD~R~~~---------------s~~~~~~lh~kK--I~sv~~-NP~~p~~laT~s~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDG---------------SEYENLRLHKKK--ITSVAL-NPVCPWFLATASLDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred cccceEEEEeecCC---------------ccchhhhhhhcc--cceeec-CCCCchheeecccCcceeeeehhhhcCCCC
Confidence 56699999998862 234445556644 999999 564 5678999999999999988532
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC----CCCCCCCCCCh----h--hhhhhhccCCCCceeEEec
Q 021453 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM----PTDFPPLPDNA----E--KIMKANKQGREDHSRITLT 251 (312)
Q Consensus 182 ~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~----~~~~~~~~~~~----~--~~~~~~~~~~~~~~l~s~~ 251 (312)
++.....|...|.++.|||.+..|+|.+.|..|||||.. ..+......|. . ..++ +.|.++..+++.+.
T Consensus 361 p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fK-A~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 361 PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFK-AAWDPDYNLIVVGR 439 (498)
T ss_pred cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchh-heeCCCccEEEEec
Confidence 223334699999999999999889999999999999973 22221111121 1 1223 34778888899888
Q ss_pred CCceEEEEEecccCcc------------ceeEeecCCC-ccCCCCCCCeEEEee
Q 021453 252 PDVIMHVLRLQRRQTL------------AYRERRYNAA-DFESDEEEGETYLLG 292 (312)
Q Consensus 252 ~d~~i~i~~~~~~~~~------------~~~~~~~~~~-~~~~~~~~~~v~~~~ 292 (312)
.-..|-+++-..++.. ...++-|... -+++....|.+|++-
T Consensus 440 ~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 440 YPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 8888888875443200 1112233333 344556667777764
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=4.7e-18 Score=131.74 Aligned_cols=205 Identities=14% Similarity=0.138 Sum_probs=152.9
Q ss_pred ccceEEEEEc-------CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC---ccEEEEEEccC
Q 021453 30 SIRLNAIVID-------PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN---IHITGLAYSNT 99 (312)
Q Consensus 30 ~~~v~~~~~~-------p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ 99 (312)
...|+..+|- |+. +++|+.+.+.-|++||.-++++..... . ..|. ....+++|+||
T Consensus 104 g~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~lraSy~------------~-ydh~de~taAhsL~Fs~D 169 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGKLRASYR------------A-YDHQDEYTAAHSLQFSPD 169 (406)
T ss_pred CCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccccccccchh------------h-hhhHHhhhhheeEEecCC
Confidence 4467777775 555 799999999999999999998543221 1 1222 23568999999
Q ss_pred CCeEEEecCCcEEEEEc-CCCcCCCCCcCCcccccCCCCCceE----ecccCCceeeEEEEecCC-CCEEEEeccCceEE
Q 021453 100 SELLISYNDELVYLFEK-NMGLGPSPLSLSPEDLQKREEPQVY----SGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLF 173 (312)
Q Consensus 100 ~~~l~s~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~ 173 (312)
|.+|.++-...|++||+ +.+.. . ....++ .+.. ..+.+++| +|. ...++.|+....+-
T Consensus 170 GeqlfaGykrcirvFdt~RpGr~-c------------~vy~t~~~~k~gq~--giisc~a~-sP~~~~~~a~gsY~q~~g 233 (406)
T KOG2919|consen 170 GEQLFAGYKRCIRVFDTSRPGRD-C------------PVYTTVTKGKFGQK--GIISCFAF-SPMDSKTLAVGSYGQRVG 233 (406)
T ss_pred CCeEeecccceEEEeeccCCCCC-C------------cchhhhhccccccc--ceeeeeec-cCCCCcceeeecccceee
Confidence 99999999999999999 44410 0 011111 1122 34889999 665 55899999999999
Q ss_pred EEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCC--CCCCCCChhhhhhhhc--cCCCCceeE
Q 021453 174 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD--FPPLPDNAEKIMKANK--QGREDHSRI 248 (312)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~l~ 248 (312)
|+.-..+.++..+-+|.+.|+.+.|+++|+.|.+|. .|-.|-.||++... +..+..|....-.... ..+.+++|+
T Consensus 234 iy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~La 313 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILA 313 (406)
T ss_pred eEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceee
Confidence 999888999999999999999999999999999988 68899999998654 3444444442222222 345789999
Q ss_pred EecCCceEEEEEeccc
Q 021453 249 TLTPDVIMHVLRLQRR 264 (312)
Q Consensus 249 s~~~d~~i~i~~~~~~ 264 (312)
+|+.+|.|++||++..
T Consensus 314 sG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDL 329 (406)
T ss_pred ccCCCccEEEEecCCC
Confidence 9999999999999874
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.9e-18 Score=139.59 Aligned_cols=218 Identities=13% Similarity=0.206 Sum_probs=164.9
Q ss_pred eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccc
Q 021453 2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 81 (312)
Q Consensus 2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.||+.+.+..++-.....+ ...+..+..+|++ ++|+..+..|.|.+.-..+++++.. +
T Consensus 283 ysyDle~ak~~k~~~~~g~e--------~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s---------~--- 341 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVE--------EKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITS---------F--- 341 (514)
T ss_pred EEeeccccccccccCCCCcc--------cchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhe---------e---
Confidence 57888776644443322111 2356678889998 7999999999999999998875422 1
Q ss_pred ccccCCCccEEEEEEccCCCeEE-EecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC
Q 021453 82 HLIGKNNIHITGLAYSNTSELLI-SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 160 (312)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~~l~-s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~ 160 (312)
.-.+.|..++|+.+++.|. ++++|.|++||++.. .++..+..... ..-++++. ++++
T Consensus 342 ----KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~----------------~~~~rf~D~G~-v~gts~~~-S~ng 399 (514)
T KOG2055|consen 342 ----KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN----------------SCLHRFVDDGS-VHGTSLCI-SLNG 399 (514)
T ss_pred ----eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc----------------ceEEEEeecCc-cceeeeee-cCCC
Confidence 1256789999999998555 468999999999987 67777764433 22466776 8999
Q ss_pred CEEEEeccCceEEEEeccC------CeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCCC-CCCCCCh
Q 021453 161 EYVMSGSDCGHLFIWKKKG------GKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDF-PPLPDNA 231 (312)
Q Consensus 161 ~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~--~d~~i~iwd~~~~~~-~~~~~~~ 231 (312)
.|||+|+..|.|.|||.++ .+++..+..-...|++++|+|+..+||.+| ....+|+-.+.+..+ ..++...
T Consensus 400 ~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 400 SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence 9999999999999999653 466777766677899999999999988777 567899988877664 3444322
Q ss_pred h--hhhhhhccCCCCceeEEecCCceEEEEEec
Q 021453 232 E--KIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 232 ~--~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
. .-+.+..+++.+.+++.|..++.+.+|.+.
T Consensus 480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 2 224666788999999999999999999875
No 157
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=2.2e-17 Score=142.27 Aligned_cols=239 Identities=15% Similarity=0.198 Sum_probs=168.0
Q ss_pred CeeecccCc-cceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021453 1 MWQFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
+.+|+++.+ .+...+.+ +..|+|++|+|..+++++.|+.+|.|.+||++.+... + .. .
T Consensus 224 ~~vW~~~~p~~Pe~~~~~------------~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-------~-~s-~ 282 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLES------------PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-------P-PS-G 282 (555)
T ss_pred EEEEecCCCCCceEEEec------------CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-------C-Cc-c
Confidence 368998876 33333433 4589999999999999999999999999999977621 0 11 2
Q ss_pred ccccccCCCccEEEEEEccCCC--eEEE-ecCCcEEEEEcCCCcCCCCCcC----------------------Cccc---
Q 021453 80 PRHLIGKNNIHITGLAYSNTSE--LLIS-YNDELVYLFEKNMGLGPSPLSL----------------------SPED--- 131 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~--~l~s-~~d~~i~iwd~~~~~~~~~~~~----------------------~~~~--- 131 (312)
.......|..+++.+.|..+-. -+++ +.||.|..|+++.-..|....+ ...+
T Consensus 283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence 2233367899999999977553 2555 5799999999875432211100 0000
Q ss_pred -----------------ccCC-----CCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc-CCeeEEEeec
Q 021453 132 -----------------LQKR-----EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVG 188 (312)
Q Consensus 132 -----------------~~~~-----~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~ 188 (312)
.... +....+..|.+. |..+.+ +|-+..++..+.|.+++||... ...++..+..
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~--v~~v~~-nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~ 439 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP--VYAVSR-NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS 439 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcc--eEeeec-CCCccceeeeeccceeEeccccCCCCcchhhhh
Confidence 0000 112233344444 999998 7877666555559999999987 6778888888
Q ss_pred CccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCC--CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 189 DRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 189 ~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+...|++++|||.... |+++..||.|.+||+......... .....++....++..+..++.|...|.++++++..
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 8888999999999876 788889999999998765432221 11255566667777899999999999999999853
No 158
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.7e-18 Score=135.58 Aligned_cols=202 Identities=10% Similarity=0.156 Sum_probs=153.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-c
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-N 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~ 107 (312)
.++|+++.|||.. .++++++.|+.++||.+....- ..++.. .-...+|.+.+|.|+|+ .++++ .
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N-------~~lqS~------~l~~fPi~~a~f~p~G~~~i~~s~r 278 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVN-------PKLQSI------HLEKFPIQKAEFAPNGHSVIFTSGR 278 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccC-------hhheee------eeccCccceeeecCCCceEEEeccc
Confidence 4789999999988 6999999999999999975431 111111 22356899999999998 66665 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
...++.||+.+.+ ...+....++.. ..+..... ++++++|+..+..|.|.+....+++.+..++
T Consensus 279 rky~ysyDle~ak--------------~~k~~~~~g~e~-~~~e~FeV-Shd~~fia~~G~~G~I~lLhakT~eli~s~K 342 (514)
T KOG2055|consen 279 RKYLYSYDLETAK--------------VTKLKPPYGVEE-KSMERFEV-SHDSNFIAIAGNNGHIHLLHAKTKELITSFK 342 (514)
T ss_pred ceEEEEeeccccc--------------cccccCCCCccc-chhheeEe-cCCCCeEEEcccCceEEeehhhhhhhhheee
Confidence 8899999998762 112223333332 23566666 8999999999999999999999999998887
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021453 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 188 ~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
-.+.|..++|+.+++.|++++.+|.|.+||++...+ ..+.....---...+.+.++.++++|+..|.+.|++.+
T Consensus 343 -ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 343 -IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred -eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 457899999999999999999999999999998764 33332222222333456688899999999999999854
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4e-17 Score=126.46 Aligned_cols=233 Identities=10% Similarity=0.104 Sum_probs=156.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc--cccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF--CPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
..+.+.|.|+-..+++......++++|.+...+- ...+.... ....+...|...+..+-...++++|+++ .|
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-----G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d 208 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-----GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD 208 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc-----CCCCcccccccccccchhcccceEEEeecCCceEEEEecCC
Confidence 4678899999866777777788999999865441 11111111 1122335567777777777788899997 59
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc---CC-----
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GG----- 180 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---~~----- 180 (312)
..|.+|++.. +.+..+...... -...+. +|+|+++++++..-.|++|.+- .|
T Consensus 209 t~i~lw~lkG-----------------q~L~~idtnq~~--n~~aav-SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev 268 (420)
T KOG2096|consen 209 TKICLWDLKG-----------------QLLQSIDTNQSS--NYDAAV-SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV 268 (420)
T ss_pred CcEEEEecCC-----------------ceeeeecccccc--ccceee-CCCCcEEEEecCCCCceEEEEEeccCcchhhh
Confidence 9999999984 566666555443 455666 9999999999999999999853 22
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-----CCCCCC-------CChhhhhhhhccCCCCceeE
Q 021453 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-----DFPPLP-------DNAEKIMKANKQGREDHSRI 248 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~l~ 248 (312)
+.+..+++|...|..++|+|+...++|.+.||++||||+.-. ....+. ......+ ....+|++. .+
T Consensus 269 ~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~-~l 346 (420)
T KOG2096|consen 269 KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGD-SL 346 (420)
T ss_pred hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCc-EE
Confidence 345678899999999999999999999999999999997532 122111 1111111 222444444 44
Q ss_pred EecCCceEEEEEecccCc-----------cceeEeecCCCccCCCCCCCeEEEee
Q 021453 249 TLTPDVIMHVLRLQRRQT-----------LAYRERRYNAADFESDEEEGETYLLG 292 (312)
Q Consensus 249 s~~~d~~i~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (312)
+.+....++++....++. +..+.+.+++..+++..+. .+.++.
T Consensus 347 A~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 347 AVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRVIR 400 (420)
T ss_pred EeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeeeec
Confidence 566677788887665432 2233566666666665443 344444
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=2.7e-18 Score=144.15 Aligned_cols=206 Identities=13% Similarity=0.191 Sum_probs=153.5
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe-c
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-N 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~ 107 (312)
...|+++.|+|..+..||+++.||.|++|.+..+.+... ...+..++..|...|+++.|+|-. ..|+++ .
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------EMTPEKILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--------cCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence 557999999998889999999999999999987653211 224555668899999999999965 477775 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEEEe
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLM 186 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~ 186 (312)
|.+|++||+.+. +....+.+|.+. |.+++| +|+|+.+++.+.||+|++|..++++ ++..-
T Consensus 699 d~Ti~lWDl~~~----------------~~~~~l~gHtdq--If~~AW-SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg 759 (1012)
T KOG1445|consen 699 DSTIELWDLANA----------------KLYSRLVGHTDQ--IFGIAW-SPDGRRIATVCKDGTLRVYEPRSREQPVYEG 759 (1012)
T ss_pred cceeeeeehhhh----------------hhhheeccCcCc--eeEEEE-CCCCcceeeeecCceEEEeCCCCCCCccccC
Confidence 999999999988 788889999987 999999 9999999999999999999988764 33332
Q ss_pred ecCc-cceEEEEEcCCCCeEEEEeCC----CcEEEccCCCCCCCCCC-----CChhhhhhhhccCC-CCceeEEecCCce
Q 021453 187 VGDR-HVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTDFPPLP-----DNAEKIMKANKQGR-EDHSRITLTPDVI 255 (312)
Q Consensus 187 ~~~~-~~v~~v~~~p~~~~l~t~~~d----~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~l~s~~~d~~ 255 (312)
++.- ..-..+.|.-+|++++..+.| +.|.+||.++-....+. ......+. .... .+-++++|-.|..
T Consensus 760 ~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP--~YD~Ds~~lfltGKGD~~ 837 (1012)
T KOG1445|consen 760 KGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVP--HYDYDSNVLFLTGKGDRF 837 (1012)
T ss_pred CCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccc--cccCCCceEEEecCCCce
Confidence 2211 223457788899998777755 57899997765432221 11111111 1222 3456778888999
Q ss_pred EEEEEeccc
Q 021453 256 MHVLRLQRR 264 (312)
Q Consensus 256 i~i~~~~~~ 264 (312)
+.++.+-..
T Consensus 838 v~~yEv~~e 846 (1012)
T KOG1445|consen 838 VNMYEVIYE 846 (1012)
T ss_pred EEEEEecCC
Confidence 999987543
No 161
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.4e-18 Score=140.76 Aligned_cols=218 Identities=11% Similarity=0.178 Sum_probs=163.5
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~- 107 (312)
|-..|++++|+|.. -.|++++.||+|++|+++... ......-.|+-+ +.+|.++|.|+++.++++.+.+++
T Consensus 293 ~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~-~s~~~~~epi~t------fraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 293 HDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAK-KSAEKDVEPILT------FRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred chhhhhhhhcCCCC-CeEEEeccccchhhhhhcccC-CccccceeeeEE------EecccCceEEEEecCCceEEEeecc
Confidence 77889999999988 599999999999999994311 111111123333 389999999999999999999975
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE---
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--- 184 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--- 184 (312)
||+|+.|++.....+.+. .........+.||... ++.+++ +.....|++++.||+++.|+.....+..
T Consensus 365 Dg~I~~w~~p~n~dp~ds------~dp~vl~~~l~Ghtda--vw~l~~-s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~ 435 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDS------YDPSVLSGTLLGHTDA--VWLLAL-SSTKDRLLSCSSDGTVRLWEPTEESPCTFGE 435 (577)
T ss_pred CceeeeeccCCCCCcccc------cCcchhccceeccccc--eeeeee-cccccceeeecCCceEEeeccCCcCccccCC
Confidence 999999988643221111 1112355678899977 999999 8888899999999999999865333200
Q ss_pred -----------------------------------------Eeec-------CccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021453 185 -----------------------------------------LMVG-------DRHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 185 -----------------------------------------~~~~-------~~~~v~~v~~~p~~~~l~t~~~d~~i~i 216 (312)
.+.. ....+..+.++|.+...+++..|+.|++
T Consensus 436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence 1100 0124567889999999999999999999
Q ss_pred ccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 217 WAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 217 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+|..++++ .....|...+ +...+.+++.++++++.|+.+++|++...
T Consensus 516 ~dn~~~~~l~s~~a~~~sv-tslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDSV-TSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccccccchheeecccee-cceeecCCCceEEeecCCceeehhhccch
Confidence 99999885 5555555555 55668889999999999999999987544
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=6.9e-18 Score=137.76 Aligned_cols=199 Identities=11% Similarity=0.188 Sum_probs=155.2
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-CCcEE
Q 021453 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVY 112 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~ 112 (312)
.|++..... .++++|+..+.|+|||++.+. + ...+.+|...|+++.++-...+||+.+ .|.|.
T Consensus 83 ~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl--------------~-hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 83 FCVACASQS-LYEISGGQSGCVKIWDLRAKL--------------I-HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDII 146 (673)
T ss_pred HHHhhhhcc-eeeeccCcCceeeehhhHHHH--------------H-hhhccCCcceeEEEEecCCcceeEEeccCCcEE
Confidence 344444444 689999999999999999553 2 233389999999999999999999975 88999
Q ss_pred EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE-EEEeccCceEEEEeccCCeeEEEe-ecCc
Q 021453 113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLM-VGDR 190 (312)
Q Consensus 113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~-~~~~ 190 (312)
|..+.++ .....|... ....|.-+.| ++..+. |.+++.+|.|.+||.....++..+ ..|.
T Consensus 147 ih~~~t~----------------~~tt~f~~~-sgqsvRll~y-s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs 208 (673)
T KOG4378|consen 147 IHGTKTK----------------QKTTTFTID-SGQSVRLLRY-SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS 208 (673)
T ss_pred EEecccC----------------ccccceecC-CCCeEEEeec-ccccceeeEeeccCCeEEEEeccCCCcccchhhhcc
Confidence 9999887 444555433 2234778999 777665 568899999999999887777665 5799
Q ss_pred cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021453 191 HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 191 ~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
.+...++|+|.... |++.+.|+.|.+||.+.+.......... .+....+.+++.+|++|+..|.+..+|++....+
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~-Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH-PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceeeecC-CcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 99999999997654 8999999999999999876432221222 3355568889999999999999999999876444
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=7e-18 Score=141.68 Aligned_cols=197 Identities=16% Similarity=0.172 Sum_probs=142.2
Q ss_pred cEEEE--EeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE-ecCCcEEEEEcCC
Q 021453 44 NYFAV--GGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNM 118 (312)
Q Consensus 44 ~~l~~--~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~ 118 (312)
.++|+ .+.-|.|-||++..- ++- .. ....+ -....|+.+.|.|-. +.||. +.||.|++|.+..
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLP---------Dg-v~p~l--~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLP---------DG-VMPGL--FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCC---------cc-ccccc--ccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 44444 456799999999743 210 00 11111 135679999999955 56666 5799999999987
Q ss_pred CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE
Q 021453 119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 198 (312)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~ 198 (312)
+..+... ..+...+..|... |+++.|+......|++++.|-+|++||+++++....+.+|++.|.+++|
T Consensus 660 ~gl~e~~---------~tPe~~lt~h~eK--I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 660 NGLPENE---------MTPEKILTIHGEK--ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAW 728 (1012)
T ss_pred CCCCccc---------CCcceeeecccce--EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEE
Confidence 6433221 1455678888866 9999996667889999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCcEEEccCCCCCCCCC--CCChhhhhhhhccCCCCceeEEecCC----ceEEEEEecc
Q 021453 199 HPHIPMFATCGIEKTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITLTPD----VIMHVLRLQR 263 (312)
Q Consensus 199 ~p~~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~i~~~~~ 263 (312)
+|+|+.+|+.+.||+|++|+.++.+.... .+....--....|..++++++..+.| ..+.+++.+.
T Consensus 729 SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 729 SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 99999999999999999999998763222 22212112233356677887776665 4566776543
No 164
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=9.2e-17 Score=131.45 Aligned_cols=233 Identities=14% Similarity=0.230 Sum_probs=167.2
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
...|....|+|.+++++++.+. +.+.+|+++.+.+.+. ...| .......|.+++|.++|..+..-++|
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~------~~~f-----ek~ekk~Vl~v~F~engdviTgDS~G 267 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKR------QGIF-----EKREKKFVLCVTFLENGDVITGDSGG 267 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEE------eecc-----ccccceEEEEEEEcCCCCEEeecCCc
Confidence 3468899999999878777765 8999999987764321 0111 12224679999999999877666899
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee-------
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL------- 182 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~------- 182 (312)
.|.||+..+. +..+....|... |.+++. -.+|.+| +|+.|..|..||-.-.+.
T Consensus 268 ~i~Iw~~~~~----------------~~~k~~~aH~gg--v~~L~~-lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe 327 (626)
T KOG2106|consen 268 NILIWSKGTN----------------RISKQVHAHDGG--VFSLCM-LRDGTLL-SGGKDRKIILWDDNYRKLRETELPE 327 (626)
T ss_pred eEEEEeCCCc----------------eEEeEeeecCCc--eEEEEE-ecCccEe-ecCccceEEeccccccccccccCch
Confidence 9999999776 555655688876 999998 6777655 599999999999321100
Q ss_pred ----E-----------------------------EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC
Q 021453 183 ----V-----------------------------RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD 229 (312)
Q Consensus 183 ----~-----------------------------~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 229 (312)
+ ....+|......++.+|+...++|++.|+.+++|+-..-+....
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~-- 405 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI-- 405 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEE--
Confidence 0 02345777788899999999999999999999999221111111
Q ss_pred ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc---------CccceeEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021453 230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR---------QTLAYRERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
......++.+++.+ .++.|+..|...+.|..+. .++....++|++..++.+..++.+|++.++.+..
T Consensus 406 -~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 406 -IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred -ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 11122344567766 7888888888888886543 2333347889999999999999999998876544
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5e-17 Score=125.27 Aligned_cols=203 Identities=14% Similarity=0.174 Sum_probs=137.8
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEc-CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
|+|||.++....--.+. .|..|.+.|..+.|. |.-++.+|+++.|+++.||.-...+. +.+-+...
T Consensus 37 vkI~d~~~~s~~W~~Ts-------~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~------~~~~~~Wv 103 (361)
T KOG2445|consen 37 VKIWDSTSDSGTWSCTS-------SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE------EAHGRRWV 103 (361)
T ss_pred EEEEeccCCCCceEEee-------eEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc------ccccceeE
Confidence 57888755443222211 123489999999995 44338999999999999998753321 11122223
Q ss_pred ccccccCCCccEEEEEEccCC--CeEEEe-cCCcEEEEEcCCCcC---------------C---CC--------------
Q 021453 80 PRHLIGKNNIHITGLAYSNTS--ELLISY-NDELVYLFEKNMGLG---------------P---SP-------------- 124 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~---------------~---~~-------------- 124 (312)
....+......|+.+.|.|.. ..+|++ .||.+|||+...... | +.
T Consensus 104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~ 183 (361)
T KOG2445|consen 104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH 183 (361)
T ss_pred EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence 333446667889999999965 477776 699999998754320 0 00
Q ss_pred ---------------CcCCccc----ccCCCCCceEecccCCceeeEEEEecCC----CCEEEEeccCceEEEEeccCC-
Q 021453 125 ---------------LSLSPED----LQKREEPQVYSGHRNSQTVKGVNFFGPN----DEYVMSGSDCGHLFIWKKKGG- 180 (312)
Q Consensus 125 ---------------~~~~~~~----~~~~~~~~~~~~~~~~~~v~~v~~~s~~----~~~l~~~~~dg~v~iwd~~~~- 180 (312)
....++. ..+...+..+.+|..+ |++++| .|+ -..|++++.|| |+||.+...
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp--I~di~w-APn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP--IRDISW-APNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc--ceeeee-ccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 0000000 1223334455567755 999999 775 35789999999 999998731
Q ss_pred -------------------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021453 181 -------------------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 181 -------------------~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
+.+..+..|.+.|..+.|+-.|..|++.|.||.||+|...
T Consensus 260 s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 260 SAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred chhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 2345667899999999999999999999999999999743
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2e-17 Score=136.85 Aligned_cols=186 Identities=19% Similarity=0.282 Sum_probs=138.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc---cccccccCCCccEEEEEEccCCCeE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF---CPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
.+|.++|.|++..+++ ..+++|+.||+|+.|++.... .+...+ .....+.+|.+.++.+++++....|
T Consensus 341 raH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~--------dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~L 411 (577)
T KOG0642|consen 341 RAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQ--------DPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRL 411 (577)
T ss_pred ecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCC--------CcccccCcchhccceeccccceeeeeecccccce
Confidence 4699999999999998 899999999999999887221 111111 2334457999999999999988888
Q ss_pred EEe-cCCcEEEEEcCCCcC-----CCCC----c-------------------CCcccccCCCCCceEec-----ccCCce
Q 021453 104 ISY-NDELVYLFEKNMGLG-----PSPL----S-------------------LSPEDLQKREEPQVYSG-----HRNSQT 149 (312)
Q Consensus 104 ~s~-~d~~i~iwd~~~~~~-----~~~~----~-------------------~~~~~~~~~~~~~~~~~-----~~~~~~ 149 (312)
+++ .||++++|+...... +... + ..+.++......+.+.. ......
T Consensus 412 lscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~ 491 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ 491 (577)
T ss_pred eeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence 887 599999999865431 0000 0 00000111111122211 111122
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
+..+.+ .|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.|+.+++|.+...
T Consensus 492 in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 492 INKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cceEEe-cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 566766 788999999999999999999999999999999999999999999999999999999999998654
No 167
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=9.1e-18 Score=142.73 Aligned_cols=176 Identities=14% Similarity=0.239 Sum_probs=133.0
Q ss_pred CCccceEEEEEcC--CCCcEEEEEeCCCeEEEEEccCCe-ecCCCCC-CCCc-------------------------ccc
Q 021453 28 MNSIRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCH-WYSPISS-DTPV-------------------------DTF 78 (312)
Q Consensus 28 ~h~~~v~~~~~~p--~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~-~~~~-------------------------~~~ 78 (312)
.|...|.|+.|+. .+..+||+++.|+-|++||+...- +..+... ...+ +.+
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~ 578 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN 578 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence 4899999999985 232689999999999999986322 2221111 0000 000
Q ss_pred c---cccccc-----CCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC-c
Q 021453 79 C---PRHLIG-----KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-Q 148 (312)
Q Consensus 79 ~---~~~~~~-----~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 148 (312)
. ...++. .....++.++..|..++++++ .|..|+||++.++ +..+.|++..+. +
T Consensus 579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg----------------Kq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG----------------KQVKSFKGSRDHEG 642 (1080)
T ss_pred ccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc----------------ceeeeecccccCCC
Confidence 0 000001 113456777777877777774 6889999999888 788888865432 3
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021453 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
....+.. +|.|.||++.+.|.++.++|+.+++++..+.+|...|+.+.|.++.++|++.+.||.|.||.+.
T Consensus 643 ~lIKv~l-DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 643 DLIKVIL-DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ceEEEEE-CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 4667777 9999999999999999999999999999999999999999999999999999999999999875
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.6e-16 Score=134.17 Aligned_cols=216 Identities=14% Similarity=0.192 Sum_probs=160.1
Q ss_pred eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccc
Q 021453 2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 81 (312)
Q Consensus 2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
.-||+.+.++...+.+ ..+.|.+++.+|.+ ..++.|+.||.+..++...+.. .-.
T Consensus 93 ~EwDl~~lk~~~~~d~-----------~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I-------------~~~ 147 (691)
T KOG2048|consen 93 TEWDLHTLKQKYNIDS-----------NGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKI-------------TYK 147 (691)
T ss_pred EEEecccCceeEEecC-----------CCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceE-------------EEE
Confidence 3478877664433333 35689999999998 8999999999888888776653 222
Q ss_pred ccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE-----eccc-CCceeeEEE
Q 021453 82 HLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-----SGHR-NSQTVKGVN 154 (312)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~v~~v~ 154 (312)
..+....+.+.+++|+|++..+++| .||.|++||..++ ..+... .... ...-|.++.
T Consensus 148 r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~----------------~t~~~~~~~~d~l~k~~~~iVWSv~ 211 (691)
T KOG2048|consen 148 RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG----------------QTLHIITMQLDRLSKREPTIVWSVL 211 (691)
T ss_pred eecccccceEEEEEecCCccEEEecccCceEEEEEcCCC----------------ceEEEeeecccccccCCceEEEEEE
Confidence 3334557899999999999988887 5999999999876 222211 1111 122378888
Q ss_pred EecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-----CCCCC
Q 021453 155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPD 229 (312)
Q Consensus 155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~ 229 (312)
|. ....|++|..-|+|.+||...+.++..+..|.+.|.+++..+++..+++++.|+.|.-|...+..- .....
T Consensus 212 ~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~ 289 (691)
T KOG2048|consen 212 FL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL 289 (691)
T ss_pred Ee--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence 73 566799999999999999999999999999999999999999999999999999999988776531 22223
Q ss_pred ChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
|...+-..+.. +..+++++.|..+.+-.+..
T Consensus 290 h~hdvrs~av~---~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 290 HAHDVRSMAVI---ENALISGGRDFTLAICSSRE 320 (691)
T ss_pred Ccccceeeeee---cceEEecceeeEEEEccccc
Confidence 44444333222 23889999999888876554
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.9e-17 Score=126.94 Aligned_cols=192 Identities=14% Similarity=0.222 Sum_probs=138.9
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--CCeEEEe-cCCcEEEEEcCCCc
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY-NDELVYLFEKNMGL 120 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~ 120 (312)
..+|++.++|.|++||..+++.. ..+ +++...+..++|... ...+.++ .||+|++||++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l--------------~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~ 105 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL--------------EEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA 105 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh--------------hee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch
Confidence 57899999999999999998732 222 677777888888774 4566665 69999999998862
Q ss_pred CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc----CceEEEEeccCCee-EEEe-ecCccceE
Q 021453 121 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKL-VRLM-VGDRHVVN 194 (312)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~----dg~v~iwd~~~~~~-~~~~-~~~~~~v~ 194 (312)
. .....+.++. +.+..+++- .-.++.+++|++ +-.|.+||++..+. +..+ ..|...|+
T Consensus 106 e--------------~a~~~~~~~~-~~~f~~ld~-nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT 169 (376)
T KOG1188|consen 106 E--------------SARISWTQQS-GTPFICLDL-NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT 169 (376)
T ss_pred h--------------hhheeccCCC-CCcceEeec-cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence 0 2223334443 233566664 457788888864 67899999998765 5555 57999999
Q ss_pred EEEEcCCCC-eEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021453 195 QLEPHPHIP-MFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 195 ~v~~~p~~~-~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
++.|+|..+ +|++||.||.|.|||+.... +.....+...+-.+.|..+.-..+...+....+.+|++.....
T Consensus 170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 999999765 59999999999999987653 2333334555545554445555688889999999999877643
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.4e-16 Score=116.42 Aligned_cols=222 Identities=13% Similarity=0.143 Sum_probs=143.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 111 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 111 (312)
.|.+-+|+|.+ ++|++|..+|.|.+..+.+..-... . +-.. .+.....+|..+|..++|. ..+|.++.||.|
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa-~---~~gk-~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSA-E---PPGK-LKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLV 83 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhcccc-C---CCCC-cceeeccccCCCeeeeeee--hhheeeccCceE
Confidence 46677899988 8999999999999999875431111 0 0000 0111127899999999998 458888889999
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc
Q 021453 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 191 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 191 (312)
+=|.-+....... .-+.|..+.....- ..... .|+++.. .|..+-++.++.|+.++.||+.+|+..+++++|+.
T Consensus 84 ~gw~W~E~~es~~-~K~lwe~~~P~~~~--~~evP--eINam~l-dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 84 YGWEWNEEEESLA-TKRLWEVKIPMQVD--AVEVP--EINAMWL-DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred EEeeehhhhhhcc-chhhhhhcCccccC--cccCC--ccceeEe-ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 9887543311100 00111111100000 00111 2777766 88877788888999999999999999999999999
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhh-hhh------hccCCCCceeEEecCCceEEEEEecc
Q 021453 192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI-MKA------NKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 192 ~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~~------~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.|.++.--.....+++|++||++|+||.++++. .++....+.- ... .+...+..+++.| ..-.+.+|.++.
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG-gGp~lslwhLrs 236 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG-GGPKLSLWHLRS 236 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec-CCCceeEEeccC
Confidence 999998866667789999999999999999874 2222211111 110 1112234455443 345678999887
Q ss_pred cCccc
Q 021453 264 RQTLA 268 (312)
Q Consensus 264 ~~~~~ 268 (312)
.....
T Consensus 237 se~t~ 241 (325)
T KOG0649|consen 237 SESTC 241 (325)
T ss_pred CCceE
Confidence 65443
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.1e-16 Score=122.51 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=116.2
Q ss_pred CCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC-ccEEEEEEccCCCeEE
Q 021453 27 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-IHITGLAYSNTSELLI 104 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~ 104 (312)
++|+..++.++|... .+..+.+++.||+|++||++..... + ......++ .+-.+++.+-.+++++
T Consensus 67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------a------~~~~~~~~~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------A------RISWTQQSGTPFICLDLNCKKNIIA 133 (376)
T ss_pred cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------h------heeccCCCCCcceEeeccCcCCeEE
Confidence 457888899999764 5689999999999999999977621 1 11113333 3455666655667777
Q ss_pred Eec-----CCcEEEEEcCCCcCCCCCcCCcccccCCC-CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021453 105 SYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 178 (312)
Q Consensus 105 s~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~ 178 (312)
++. +..|.+||.++.. + .......|... |+++.|++.+.++|++|+-||-|.+||+.
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~q---------------q~l~~~~eSH~DD--VT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQ---------------QLLRQLNESHNDD--VTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred eccccccCceEEEEEEecccc---------------chhhhhhhhccCc--ceeEEecCCCCCeEEeecccceEEeeecC
Confidence 752 6679999999862 2 23344578876 99999966678999999999999999987
Q ss_pred CCee---EEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCC
Q 021453 179 GGKL---VRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 179 ~~~~---~~~~~~~~~~v~~v~~~p~~-~~l~t~~~d~~i~iwd~~~~ 222 (312)
.... +...-.|...|..+.|+..+ +.+.+-+..++..+|+++.+
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 4321 11222355678888887766 23555566778888877643
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=8.9e-16 Score=119.27 Aligned_cols=244 Identities=10% Similarity=0.142 Sum_probs=172.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEc-------cCCCeEE
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-------NTSELLI 104 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~ 104 (312)
-...+.|+|+| ..|++-+.|..+++|++...-...... .+...-....+.......|..-+|- |+..+++
T Consensus 51 f~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~--~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 51 FLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKAD--GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCC--CccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 35678999999 799999999999999997443221111 1111101111111224556777775 4445666
Q ss_pred Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc---eeeEEEEecCCCCEEEEeccCceEEEEec-cC
Q 021453 105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KG 179 (312)
Q Consensus 105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~s~~~~~l~~~~~dg~v~iwd~-~~ 179 (312)
++ .+.-|++||..++ ++...+.+..... ...+++| +|+|.+|++| ....|++||+ ++
T Consensus 128 ~ssr~~PIh~wdaftG----------------~lraSy~~ydh~de~taAhsL~F-s~DGeqlfaG-ykrcirvFdt~Rp 189 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTG----------------KLRASYRAYDHQDEYTAAHSLQF-SPDGEQLFAG-YKRCIRVFDTSRP 189 (406)
T ss_pred eccccCceeeeecccc----------------ccccchhhhhhHHhhhhheeEEe-cCCCCeEeec-ccceEEEeeccCC
Confidence 65 6999999999988 5665555432211 2578999 9999999876 5789999998 66
Q ss_pred CeeEEEe--e-----cCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEe
Q 021453 180 GKLVRLM--V-----GDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITL 250 (312)
Q Consensus 180 ~~~~~~~--~-----~~~~~v~~v~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~ 250 (312)
|.-...+ . +..+.+.+++|+|... .++.++.-.++-||.-..+.+ ..+.+|...+ +-..+..+++.|++|
T Consensus 190 Gr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv-ThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 190 GRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV-THLQWCEDGNKLFSG 268 (406)
T ss_pred CCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe-eeEEeccCcCeeccc
Confidence 6432221 1 2356789999999776 689999999999988777764 5566777777 455578888888887
Q ss_pred cC-CceEEEEEeccc--------------CccceeEeecCCCccCCCCCCCeEEEeecCC-CC
Q 021453 251 TP-DVIMHVLRLQRR--------------QTLAYRERRYNAADFESDEEEGETYLLGFSD-SD 297 (312)
Q Consensus 251 ~~-d~~i~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 297 (312)
+. +-.|-.||++.. +..+++...+.+.-|++++.+|.|.+||..+ ++
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 75 688999998753 3445567788889999999999999999987 44
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=5.2e-17 Score=129.44 Aligned_cols=180 Identities=16% Similarity=0.242 Sum_probs=140.8
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
..+|..+.|.++..+.++||+.|..|++|-+...... ...........+..|...|+.+.|+|+|.+||++ .+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCC------CCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 4689999999988569999999999999999866521 1001112233347899999999999999999998 58
Q ss_pred CcEEEEEcCCCcCCCCCcCCccc--ccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPED--LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|.|.+|-...- .+.+..- ..+ ...+...+.+.+|... +..++| +|+++++++++.|..+++||+..|+....+
T Consensus 87 g~v~lWk~~~~-~~~~~d~-e~~~~ke~w~v~k~lr~h~~d--iydL~W-s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 87 GEVFLWKQGDV-RIFDADT-EADLNKEKWVVKKVLRGHRDD--IYDLAW-SPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred ceEEEEEecCc-CCccccc-hhhhCccceEEEEEecccccc--hhhhhc-cCCCceeeeeeccceEEEEEeccceeEeec
Confidence 99999987631 1111111 111 1123445667788866 999999 999999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
..|..-|..++|.|-++++++-+.|...+.+.+.
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeee
Confidence 9999999999999999999999999877776654
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.1e-17 Score=144.42 Aligned_cols=231 Identities=18% Similarity=0.319 Sum_probs=169.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||...|+|+.|...| +++++|+.|..++||.+.+.. |.... .+|.+.|+.++.+.+..+++++
T Consensus 187 lgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~--------------~lAs~-rGhs~ditdlavs~~n~~iaaa 250 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR--------------CLASC-RGHSGDITDLAVSSNNTMIAAA 250 (1113)
T ss_pred Hhhhhheeeeeecccc-ceEeecCccceeeeeeccchh--------------hhccC-CCCccccchhccchhhhhhhhc
Confidence 4899999999999999 899999999999999999887 34444 8999999999999988888886
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-----
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG----- 180 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~----- 180 (312)
.|..|++|.+..+ .++..+.+|.+. |++++| +|-. +.+.||++++||.+-.
T Consensus 251 S~D~vIrvWrl~~~----------------~pvsvLrghtga--vtaiaf-sP~~----sss~dgt~~~wd~r~~~~~y~ 307 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDG----------------APVSVLRGHTGA--VTAIAF-SPRA----SSSDDGTCRIWDARLEPRIYV 307 (1113)
T ss_pred ccCceEEEEecCCC----------------chHHHHhccccc--eeeecc-Cccc----cCCCCCceEeccccccccccC
Confidence 5999999999998 799999999977 999999 7754 7789999999997711
Q ss_pred ---------eeEEEee----------c------CccceEEEEEcCCCCeEE-----------EEeCCCcEEEccCCCCCC
Q 021453 181 ---------KLVRLMV----------G------DRHVVNQLEPHPHIPMFA-----------TCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 181 ---------~~~~~~~----------~------~~~~v~~v~~~p~~~~l~-----------t~~~d~~i~iwd~~~~~~ 224 (312)
..+..+. + .......++|....-.++ ++=.+-.+++|++.++.+
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 0000000 0 000111233333322333 333455678888887754
Q ss_pred -CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc----------ceeEeecCCCccCCCCCCCeEEEeec
Q 021453 225 -PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL----------AYRERRYNAADFESDEEEGETYLLGF 293 (312)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (312)
+.+.+|....+.+..-..+.+..++.+.||...|||+..+... +-..++.+++.+...++-|.+|++++
T Consensus 388 ~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 388 LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 5555666666444433337788899999999999998765322 11267788888888888899999987
Q ss_pred CCC
Q 021453 294 SDS 296 (312)
Q Consensus 294 ~~~ 296 (312)
-.+
T Consensus 468 gqs 470 (1113)
T KOG0644|consen 468 GQS 470 (1113)
T ss_pred CCC
Confidence 544
No 175
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.6e-17 Score=128.85 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=141.2
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEE
Q 021453 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY 112 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~ 112 (312)
.+++|+.+| ..+++|+.||++|+|+..+... .... ..|...|.++.|+|||++|++- .| ..+
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t--------------~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLT--------------ILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SAR 210 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchh--------------hhhh-HhhcCccccceeCCCCcEEEEecCC-ceE
Confidence 679999998 7999999999999999776541 1111 5678889999999999999995 57 999
Q ss_pred EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-----CEEEEeccCceEEEEeccCCee-----
Q 021453 113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-----EYVMSGSDCGHLFIWKKKGGKL----- 182 (312)
Q Consensus 113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-----~~l~~~~~dg~v~iwd~~~~~~----- 182 (312)
||+..++ ..+..............+.| +.++ ..++.....+.|..|++...+.
T Consensus 211 VW~~~~g----------------~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 211 VWSVNTG----------------AALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred EEEeccC----------------chhhhcCCcccchhhhhcee-cccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 9999987 44444442222223556666 5555 2333444566677766543221
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.++.......|++++.+++|+++|.|+.||.|-|++..+.+. +.++..+...++...++|+.+++.+.+.+....+..+
T Consensus 274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 111111234799999999999999999999999999887653 3333333335577779999999999999999999887
Q ss_pred cc
Q 021453 262 QR 263 (312)
Q Consensus 262 ~~ 263 (312)
..
T Consensus 354 ~v 355 (398)
T KOG0771|consen 354 AV 355 (398)
T ss_pred ee
Confidence 65
No 176
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=3.2e-16 Score=129.28 Aligned_cols=152 Identities=17% Similarity=0.240 Sum_probs=115.6
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC--CCCCCCCccccc-----------ccccccCCCccEEEEEE
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS--PISSDTPVDTFC-----------PRHLIGKNNIHITGLAY 96 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~ 96 (312)
+..|+|+.|-|.++.+|+.+..+|.+++||..--.-.. .......-..|. +...+.--...|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 46899999999887899999999999999873211000 000000000000 00001112457889999
Q ss_pred ccCCCeEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEE
Q 021453 97 SNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 175 (312)
Q Consensus 97 ~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iw 175 (312)
+|||++||+ +.||.++|||..+. +++-.++..-.. ..|++| +|||+||++|++|--|.||
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~----------------eLlg~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQ----------------ELLGVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHH----------------HHHHHHHhhccc--eEEEEE-cCCccEEEecCCcceEEEE
Confidence 999999999 46999999999886 666666666655 999999 9999999999999999999
Q ss_pred eccCCeeEEEeecCccceEEEEEcC
Q 021453 176 KKKGGKLVRLMVGDRHVVNQLEPHP 200 (312)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~v~~~p 200 (312)
.+...+.+..-++|+..|+.|+|.|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999987
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=3.4e-15 Score=117.92 Aligned_cols=159 Identities=16% Similarity=0.221 Sum_probs=126.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e--
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-- 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-- 106 (312)
+.+|.++.++.+ +|++.-. ..|+|||+++-+++.++..- ..+...+.++..++.+.++|. +
T Consensus 87 pt~IL~VrmNr~---RLvV~Le-e~IyIydI~~MklLhTI~t~------------~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 87 PTSILAVRMNRK---RLVVCLE-ESIYIYDIKDMKLLHTIETT------------PPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred CCceEEEEEccc---eEEEEEc-ccEEEEecccceeehhhhcc------------CCCccceEeeccCCCCceEEecCCC
Confidence 567889999874 4554444 44999999988755432210 234455666666666678887 3
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce-EEEEeccCCeeEEE
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-v~iwd~~~~~~~~~ 185 (312)
..|.|.+||+.+- +....+..|.+. +-+++| +++|.+||++++.|+ |+|+.+.+|+.+.+
T Consensus 151 t~GdV~l~d~~nl----------------~~v~~I~aH~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 151 TSGDVVLFDTINL----------------QPVNTINAHKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred CCceEEEEEcccc----------------eeeeEEEecCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 3899999999886 788888999976 999999 999999999999887 78999999999999
Q ss_pred eecCc--cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 186 MVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 186 ~~~~~--~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
|+... ..|.+++|+|++++|++.|..++|.+|.+....
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 97544 468899999999999999999999999987654
No 178
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=6.7e-16 Score=130.86 Aligned_cols=205 Identities=14% Similarity=0.177 Sum_probs=145.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 101 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 101 (312)
-||.-.|++++.+|++ +++|+++.. -.|++|+..+.. ... .+.+|.-.|+.++|||+|+
T Consensus 522 YGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~--------------~~~-~L~~HsLTVT~l~FSpdg~ 585 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWL--------------QVQ-ELEGHSLTVTRLAFSPDGR 585 (764)
T ss_pred ccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchh--------------hhh-eecccceEEEEEEECCCCc
Confidence 3899999999999999 899998654 459999988765 222 2388999999999999999
Q ss_pred eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021453 102 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 180 (312)
Q Consensus 102 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~ 180 (312)
+|++. .|.++.+|........ .......+.|. ..|.++.| +|++.++++++.|.+|++|.....
T Consensus 586 ~LLsvsRDRt~sl~~~~~~~~~------------e~~fa~~k~Ht--RIIWdcsW-~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 586 YLLSVSRDRTVSLYEVQEDIKD------------EFRFACLKAHT--RIIWDCSW-SPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEeecCceEEeeeeecccch------------hhhhccccccc--eEEEEccc-CcccceeEEecCCceEEEEeccCc
Confidence 88885 6999999998543100 00112245566 44999999 999999999999999999998766
Q ss_pred --eeEEEe--ecCccceEEEEEcCCC----C-eEEEEeCCCcEEEccCCCCC-------------CCCCCCChhhhhhhh
Q 021453 181 --KLVRLM--VGDRHVVNQLEPHPHI----P-MFATCGIEKTVKLWAPMPTD-------------FPPLPDNAEKIMKAN 238 (312)
Q Consensus 181 --~~~~~~--~~~~~~v~~v~~~p~~----~-~l~t~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~ 238 (312)
+.+..+ ..+..+|+.++|.|-- . .++.|-..|.|.+|...... ......+...+..+.
T Consensus 651 ~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~ 730 (764)
T KOG1063|consen 651 RDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLL 730 (764)
T ss_pred hhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeE
Confidence 444332 3477899999998732 2 46677789999999954111 111123444444444
Q ss_pred ccCC---------CCceeEEecCCceEEEEEec
Q 021453 239 KQGR---------EDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 239 ~~~~---------~~~~l~s~~~d~~i~i~~~~ 262 (312)
|.+. +...+..++.|..+|++++.
T Consensus 731 w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 731 WRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eccccccccccccceeEEeeecccceeEEeecc
Confidence 3322 22345788888888888753
No 179
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=2.4e-15 Score=114.95 Aligned_cols=154 Identities=12% Similarity=0.175 Sum_probs=108.7
Q ss_pred EEEEEcCCCCcEEEEEeC---------CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021453 34 NAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 104 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 104 (312)
..+.|+|+|..+++.... -+...+|.++... .+ ...+.....++|.+++|+|+|+.++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--------~~-----~~~i~l~~~~~I~~~~WsP~g~~fa 75 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--------IP-----VESIELKKEGPIHDVAWSPNGNEFA 75 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--------Cc-----cceeeccCCCceEEEEECcCCCEEE
Confidence 468899999544444441 1345566664332 01 1111122345699999999998654
Q ss_pred E--e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---CceEEEEecc
Q 021453 105 S--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKKK 178 (312)
Q Consensus 105 s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---dg~v~iwd~~ 178 (312)
. + .++.|.+||++. +.+..+. ... +..+.| +|+|++|++++. .|.|.+||.+
T Consensus 76 vi~g~~~~~v~lyd~~~-----------------~~i~~~~--~~~--~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVKG-----------------KKIFSFG--TQP--RNTISW-SPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred EEEccCCcccEEEcCcc-----------------cEeEeec--CCC--ceEEEE-CCCCCEEEEEEccCCCcEEEEEECC
Confidence 4 3 378999999963 4555554 222 778999 999999998864 4679999999
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEccCCCCCC
Q 021453 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF 224 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~------d~~i~iwd~~~~~~ 224 (312)
+.+.+.... | ..++.++|+|+|++|+++.. |..++||+..+..+
T Consensus 134 ~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 134 KKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 888887765 3 34789999999999988863 78899999887654
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=4e-16 Score=117.91 Aligned_cols=171 Identities=12% Similarity=0.137 Sum_probs=124.3
Q ss_pred CccceEEEEEcCC-CC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021453 29 NSIRLNAIVIDPR-NP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 105 (312)
Q Consensus 29 h~~~v~~~~~~p~-~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 105 (312)
..+.++|..+.-. +. -++++|-++|.+.+||+.++..+....... ........|.++|.++.+.+....=++
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~-----kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS-----KVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc-----ccccchhhccCcceeeeechhhcCCcCC
Confidence 4566777775332 22 356778899999999999874221111000 111222678999999999876543344
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+.+..+..|++....+ .........-.... |..+.. -|+++.+++++.|++|+||+.++.+++..
T Consensus 224 ga~dkl~~~Sl~~s~g------------slq~~~e~~lknpG--v~gvrI-RpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTG------------SLQIRKEITLKNPG--VSGVRI-RPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred CccccceeeeeccccC------------cccccceEEecCCC--ccceEE-ccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 4577888888864311 11222233323333 788888 89999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
++-|.+.|++++|+|+...+|++++|++|.+|++
T Consensus 289 LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999986
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=1.2e-15 Score=129.24 Aligned_cols=224 Identities=11% Similarity=0.085 Sum_probs=163.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||+..|+|++|+.+| .+||+|+.|..|.+|+..-.. .+...|.+.|.++.|+|-.+.|+++
T Consensus 50 KgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG-----------------~LkYSH~D~IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 50 KGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEG-----------------ILKYSHNDAIQCMSFNPITHQLASC 111 (1081)
T ss_pred ccccceEEEEEEccCC-ceeccCCCceeEEEecccccc-----------------eeeeccCCeeeEeecCchHHHhhhc
Confidence 3799999999999999 899999999999999976322 1126799999999999999999998
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
+=...-+|..... .+. .++....+.+++| ..+|++++.|-.+|+|.+=+- +++....+
T Consensus 112 sLsdFglWS~~qK-----------------~V~---K~kss~R~~~CsW-tnDGqylalG~~nGTIsiRNk-~gEek~~I 169 (1081)
T KOG1538|consen 112 SLSDFGLWSPEQK-----------------SVS---KHKSSSRIICCSW-TNDGQYLALGMFNGTISIRNK-NGEEKVKI 169 (1081)
T ss_pred chhhccccChhhh-----------------hHH---hhhhheeEEEeee-cCCCcEEEEeccCceEEeecC-CCCcceEE
Confidence 7666778887543 222 2333334889999 999999999999999988754 45554444
Q ss_pred e---cCccceEEEEEcCCC-----CeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021453 187 V---GDRHVVNQLEPHPHI-----PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 187 ~---~~~~~v~~v~~~p~~-----~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
. +..++|.+++|+|.. ..++......++.++.+.+..+..-..-.-. .-+....+++.+++.|+.|+.+++
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~Fd-P~CisYf~NGEy~LiGGsdk~L~~ 248 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFD-PCCISYFTNGEYILLGGSDKQLSL 248 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCC-chhheeccCCcEEEEccCCCceEE
Confidence 3 356899999999964 3588888899999999887654211111111 123335678999999999999999
Q ss_pred EEec--------ccCcccee-EeecCCCccCCCCCCCeEEEe
Q 021453 259 LRLQ--------RRQTLAYR-ERRYNAADFESDEEEGETYLL 291 (312)
Q Consensus 259 ~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~ 291 (312)
+.-. .....+|. ...|+++.+..+..+|.+-.+
T Consensus 249 fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 249 FTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred EeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 8521 12234444 667777777777666666443
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=7.4e-15 Score=112.62 Aligned_cols=242 Identities=12% Similarity=0.160 Sum_probs=165.1
Q ss_pred cceEEEEEc--CCCCcEEEEEeC----CCeEEEEEcc--CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-
Q 021453 31 IRLNAIVID--PRNPNYFAVGGS----DEYARVYDIR--KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE- 101 (312)
Q Consensus 31 ~~v~~~~~~--p~~~~~l~~~~~----d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 101 (312)
-+++++.|+ |+...+||.|+. .++|.|-.+. +++.+ .... ..|..+++.+.|.|+.+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~-------------~~a~-fd~~YP~tK~~wiPd~~g 110 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELV-------------EDAN-FDHPYPVTKLMWIPDSKG 110 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCcee-------------ccCC-CCCCCCccceEecCCccc
Confidence 468899998 344468888873 4667766554 23211 1111 46888999999999873
Q ss_pred ---eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc---CCceeeEEEEecCCCCEEEEeccCceEEEE
Q 021453 102 ---LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 175 (312)
Q Consensus 102 ---~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~~~s~~~~~l~~~~~dg~v~iw 175 (312)
-|.+.++..+++|.+....... .+...+..++ ...++++..|...+.+++.+.+-|.+..||
T Consensus 111 ~~pdlLATs~D~LRlWri~~ee~~~------------~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiW 178 (364)
T KOG0290|consen 111 VYPDLLATSSDFLRLWRIGDEESRV------------ELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIW 178 (364)
T ss_pred cCcchhhcccCeEEEEeccCcCCce------------ehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEE
Confidence 3444455689999987431110 1111111111 113499999966678999999999999999
Q ss_pred eccCCe---eEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCCCCC----CCChhhhhhhhccCCCCcee
Q 021453 176 KKKGGK---LVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPL----PDNAEKIMKANKQGREDHSR 247 (312)
Q Consensus 176 d~~~~~---~~~~~~~~~~~v~~v~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l 247 (312)
|+.++. ...++-+|...|.+++|...+. .||+.|.||.+|+||++..+..++ +....+.+.+.|...+.+++
T Consensus 179 die~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 179 DIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred EEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHH
Confidence 999863 3567788999999999998664 599999999999999998764332 22245566666655688999
Q ss_pred EEecCC-ceEEEEEecccCcccee-----------Eeec-CCCccCCCCCCCeEEEeecCCCCC
Q 021453 248 ITLTPD-VIMHVLRLQRRQTLAYR-----------ERRY-NAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 248 ~s~~~d-~~i~i~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
+++..| ..+.|.|++....++.. .+-| ....+-+..|++.+++||+..--.
T Consensus 259 ATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 259 ATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred hhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 998887 56888998765433222 2222 235566778899999999865443
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=2.1e-14 Score=123.72 Aligned_cols=201 Identities=20% Similarity=0.345 Sum_probs=148.5
Q ss_pred CCccceEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
+|...|.+++|+|++ ..+++++. |+.+++|++.... ....+..|...+.+++|+|++. ++++
T Consensus 153 ~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 153 GHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGK---------------PLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred cCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCc---------------eEEeeccCCCceEEEEEcCCcceEEEE
Confidence 378899999999999 57888875 9999999999744 1122255889999999999998 6666
Q ss_pred -ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee-
Q 021453 106 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL- 182 (312)
Q Consensus 106 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~- 182 (312)
+.|+.+++||...+ .... .+.+|... . -..| ++++.++++++.|+.+++|+......
T Consensus 217 ~~~d~~i~~wd~~~~----------------~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~ 276 (466)
T COG2319 217 GSSDGTIRLWDLSTG----------------KLLRSTLSGHSDS--V-VSSF-SPDGSLLASGSSDGTIRLWDLRSSSSL 276 (466)
T ss_pred ecCCCcEEEEECCCC----------------cEEeeecCCCCcc--e-eEeE-CCCCCEEEEecCCCcEEEeeecCCCcE
Confidence 46999999988754 4444 56677654 3 2267 88888999999999999999986664
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCC--CCChhhhhhhhccCCC-CceeEEecCCceEEE
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL--PDNAEKIMKANKQGRE-DHSRITLTPDVIMHV 258 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~--~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~i 258 (312)
+..+..|...|.++.|+|++..+++++.|+.+++|+..+... ... ..+...+..... .++ ......+..|+.+++
T Consensus 277 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~ 355 (466)
T COG2319 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRL 355 (466)
T ss_pred EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEe
Confidence 444467889999999999888888888899999998887653 222 134443433333 333 233344467888888
Q ss_pred EEecccC
Q 021453 259 LRLQRRQ 265 (312)
Q Consensus 259 ~~~~~~~ 265 (312)
|++....
T Consensus 356 ~~~~~~~ 362 (466)
T COG2319 356 WDLRTGK 362 (466)
T ss_pred eecCCCc
Confidence 9877654
No 184
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.5e-16 Score=127.23 Aligned_cols=169 Identities=17% Similarity=0.231 Sum_probs=126.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLI 104 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~ 104 (312)
-||.+-|+|+.|+.+| .+|++|+.|-.+.|||....+ ....+-.+|...|.++.|-|.. ++++
T Consensus 47 ~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~K--------------llhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYK--------------LLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred ccccceecceeecCCC-CEEeecCCcceEEeecchhcc--------------eeeeeecccccceeEEeeeccCCCeEEE
Confidence 3899999999999999 899999999999999998776 3344447899999999999955 4777
Q ss_pred Ee-cCCcEEEEEcCCCcC-CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCe
Q 021453 105 SY-NDELVYLFEKNMGLG-PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 105 s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~ 181 (312)
++ .|..|++||+....+ ..+-. -......+..|... |..++- .|++ +.+.++++||+++-+|++...
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~-------~~~~~~~~~cht~r--VKria~-~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHG-------MEETTRCWSCHTDR--VKRIAT-APNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred eccCcceEEEEecccccccccccC-------ccchhhhhhhhhhh--hhheec-CCCCCceEEEecCCcceeeecccCCc
Confidence 76 599999999975210 00000 00344556677766 888887 6776 789999999999999998632
Q ss_pred eEE-------Ee---ecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCC
Q 021453 182 LVR-------LM---VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM 220 (312)
Q Consensus 182 ~~~-------~~---~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~ 220 (312)
... .+ ...--...++..+|...+ |+.|+.|-..++||.+
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 211 01 111123568899998765 8999999999999954
No 185
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=4.6e-15 Score=117.98 Aligned_cols=170 Identities=16% Similarity=0.324 Sum_probs=134.7
Q ss_pred cceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--CCeEEEe
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~ 106 (312)
.++..|.-+|..+.++|+|+.. ..+++||+...+.+....... ...+--.-.-+++++.|-+. ...||++
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp------nD~L~LrVPvW~tdi~Fl~g~~~~~fat~ 222 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP------NDRLGLRVPVWITDIRFLEGSPNYKFATI 222 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC------CccccceeeeeeccceecCCCCCceEEEE
Confidence 3577888888888899999998 899999999775432221100 00010112456788899887 5678886
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.-+++++||...+. +++..|.-...+ ++++.. .|+++++++|...|.+..||++.++....
T Consensus 223 T~~hqvR~YDt~~qR---------------RPV~~fd~~E~~--is~~~l-~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQR---------------RPVAQFDFLENP--ISSTGL-TPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred ecceeEEEecCcccC---------------cceeEeccccCc--ceeeee-cCCCcEEEEecccchhheecccCceeecc
Confidence 59999999998763 566666655655 999998 89999999999999999999999998776
Q ss_pred -eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 186 -MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 186 -~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
+++..+.|+++..+|..++++++|.|+.|||+|+.+..+
T Consensus 285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 788899999999999999999999999999999998543
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=7.5e-15 Score=126.79 Aligned_cols=191 Identities=14% Similarity=0.086 Sum_probs=124.9
Q ss_pred CccceEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
|...+.+.+|+|++ +.|+.++.+ ..|++||+.+++.. ..... .+| ...++|+|+|+.|+.
T Consensus 202 ~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~------------~l~~~-~g~---~~~~~wSPDG~~La~ 264 (429)
T PRK01742 202 SSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARK------------VVASF-RGH---NGAPAFSPDGSRLAF 264 (429)
T ss_pred CCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceE------------EEecC-CCc---cCceeECCCCCEEEE
Confidence 56679999999999 666666543 47999999876521 01111 222 336899999997766
Q ss_pred e--cCCcEEE--EEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCC
Q 021453 106 Y--NDELVYL--FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGG 180 (312)
Q Consensus 106 ~--~d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~ 180 (312)
+ .+|.+.| ||+.++ ....+..+... +....| +|+|+.|+..+ .++...||++...
T Consensus 265 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~w-SpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 265 ASSKDGVLNIYVMGANGG-----------------TPSQLTSGAGN--NTEPSW-SPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred EEecCCcEEEEEEECCCC-----------------CeEeeccCCCC--cCCEEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence 4 3776555 466554 33445555433 778999 99999876554 5777888876532
Q ss_pred -eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021453 181 -KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL 259 (312)
Q Consensus 181 -~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~ 259 (312)
.....+ .+.. ....|+|+|+.++..+.++ +.+||+.++....+..... .....++++++.++..+.++..++|
T Consensus 325 ~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~--~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 325 GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFL--DESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCC--CCCceECCCCCEEEEEEcCCCceEE
Confidence 222223 3433 4578999999998887765 5559998876433321111 1233478899999999888888888
Q ss_pred Eec
Q 021453 260 RLQ 262 (312)
Q Consensus 260 ~~~ 262 (312)
.+.
T Consensus 399 ~~~ 401 (429)
T PRK01742 399 QLV 401 (429)
T ss_pred EEE
Confidence 764
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=2e-15 Score=124.74 Aligned_cols=182 Identities=11% Similarity=0.154 Sum_probs=140.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
..|.+.+.+-.|+|+| .-|++++.||.|++|.-. |-+ +..+.....+|.|++|.|+..-++.+
T Consensus 101 ~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GML---------------RStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GML---------------RSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc-chH---------------HHHHhhcCceeEEEEECCCCCceEEe
Confidence 4689999999999999 799999999999999854 321 11113346789999999999988888
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
..+.+.|=.+... ..+...+.|.+- |.++.| ++..+.+++|++|-..++||.. |+.+..-
T Consensus 164 ~g~h~~IKpL~~n----------------~k~i~WkAHDGi--iL~~~W-~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S 223 (737)
T KOG1524|consen 164 QGGHISIKPLAAN----------------SKIIRWRAHDGL--VLSLSW-STQSNIIASGGEDFRFKIWDAQ-GANLFTS 223 (737)
T ss_pred cCCeEEEeecccc----------------cceeEEeccCcE--EEEeec-CccccceeecCCceeEEeeccc-CcccccC
Confidence 8888888877665 455667788855 999999 9999999999999999999976 7788887
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
..|..+|++++|.|+ ..++.++. .++|+=.++. ..++.. .|++++..+..++..|.+.+
T Consensus 224 ~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~----------GSifnl-sWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 224 AAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRV----------GSIFNL-SWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred Chhccceeeeeeccc-cceeeeee-eeeeecCCCc----------cceEEE-EEcCCCceeeccccCceEEE
Confidence 889999999999999 66666663 4566333333 233333 36777777777777776544
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=6.7e-15 Score=130.48 Aligned_cols=236 Identities=10% Similarity=0.090 Sum_probs=153.2
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
|++||.+.++...-|....+. ...|+.+.+-. +...++++++.||.||||+-..... ...+.+..+.
T Consensus 1088 i~vwd~e~~~~l~~F~n~~~~--------~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----~~~eLVTaw~ 1155 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFP--------DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----KKPELVTAWS 1155 (1387)
T ss_pred EEEEecccCceeccccCCCCC--------CCccceeeeecccchhheeeeccCceEEEeccccccc----CCceeEEeec
Confidence 467888766543333333322 56799998754 4447899999999999997532210 0111122211
Q ss_pred c-cccccCCCccEEEEEEccCCC-eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021453 80 P-RHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 157 (312)
Q Consensus 80 ~-~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s 157 (312)
. .....+..+.-.-+.|..... ++++|.-..|+|||.... .....+..... .-++++.-..
T Consensus 1156 ~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E----------------~~~~diP~~s~-t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1156 SLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE----------------QVVADIPYGSS-TLVTALSADL 1218 (1387)
T ss_pred cccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc----------------eeEeecccCCC-ccceeecccc
Confidence 1 111111111124567776544 555566788999999876 34444432222 2377776544
Q ss_pred CCCCEEEEeccCceEEEEeccCCe---eEEEeecCccc--eEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCC-C-
Q 021453 158 PNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDRHV--VNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLP-D- 229 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~--v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~-~- 229 (312)
..|+.+++|..||.|++||.+... .+..++.|+.. |..+.+-++|-- |++|+.||.|++||++.....++. .
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence 568999999999999999987543 46777888876 999999997765 999999999999999985332222 1
Q ss_pred -Ch--hhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021453 230 -NA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 230 -~~--~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
|- ...++....+.....+++|+. ..++||++...+.
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh
Confidence 11 222455556677788888888 9999999876543
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=5.2e-15 Score=122.31 Aligned_cols=208 Identities=10% Similarity=0.091 Sum_probs=151.2
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCcCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~ 122 (312)
..|+.++.||.+.+.+-. ++ +...+..|.+.+.+-.|+|+|.-|++ |.||.|++|....
T Consensus 76 d~~~i~s~DGkf~il~k~-~r---------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG---- 135 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-AR---------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG---- 135 (737)
T ss_pred ceEEEEcCCceEEEeccc-ch---------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----
Confidence 578888999999988754 33 22223789999999999999996666 5799999998654
Q ss_pred CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021453 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 202 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~ 202 (312)
.+..++..... .|.|++| .|+.+-++-+. .+.+.|=.+.....+-.+++|.+-|.++.|+|..
T Consensus 136 -------------MLRStl~Q~~~--~v~c~~W-~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s 198 (737)
T KOG1524|consen 136 -------------MLRSTVVQNEE--SIRCARW-APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS 198 (737)
T ss_pred -------------hHHHHHhhcCc--eeEEEEE-CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccc
Confidence 34444544443 4999999 78776655543 3556666666666677899999999999999999
Q ss_pred CeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCccCCC
Q 021453 203 PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESD 282 (312)
Q Consensus 203 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 282 (312)
+.+++|++|-..++||-.+..+.+-..|.-++ +...|.++ .++...+-.++|+-..+.+ ......+++++..++.+
T Consensus 199 ~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~I-TSva~npd--~~~~v~S~nt~R~~~p~~G-SifnlsWS~DGTQ~a~g 274 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQGANLFTSAAEEYAI-TSVAFNPE--KDYLLWSYNTARFSSPRVG-SIFNLSWSADGTQATCG 274 (737)
T ss_pred cceeecCCceeEEeecccCcccccCChhccce-eeeeeccc--cceeeeeeeeeeecCCCcc-ceEEEEEcCCCceeecc
Confidence 99999999999999999988876666566666 44456676 3333333444442222222 22233899999999999
Q ss_pred CCCCeEEEee
Q 021453 283 EEEGETYLLG 292 (312)
Q Consensus 283 ~~~~~v~~~~ 292 (312)
...|.+++.-
T Consensus 275 t~~G~v~~A~ 284 (737)
T KOG1524|consen 275 TSTGQLIVAY 284 (737)
T ss_pred ccCceEEEee
Confidence 9888886653
No 190
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=6.3e-15 Score=111.52 Aligned_cols=239 Identities=13% Similarity=0.147 Sum_probs=157.6
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++|++++.+....+... |+..|+.+.--|++ .+.+-+.|+.+.+|++.....+..-.....--.||.
T Consensus 37 V~~w~lqt~r~~~~~r~~----------g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCr 104 (323)
T KOG0322|consen 37 VKMWVLQTERDLPLIRLF----------GRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCR 104 (323)
T ss_pred EEEEEeecCccchhhhhh----------ccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeecccccccc
Confidence 578999988877777643 56789999999975 688888999999999976332211000000000010
Q ss_pred c--------------------------------------ccccCCCccEEEEEEccCC-C--eEEEe-cCCcEEEEEcCC
Q 021453 81 R--------------------------------------HLIGKNNIHITGLAYSNTS-E--LLISY-NDELVYLFEKNM 118 (312)
Q Consensus 81 ~--------------------------------------~~~~~~~~~i~~~~~~~~~-~--~l~s~-~d~~i~iwd~~~ 118 (312)
. .-..+..+.+.+..+..+. . +|++| .+|.+.+||+..
T Consensus 105 fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 105 FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred ceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 0 0001223456666654433 2 44455 699999999987
Q ss_pred CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC--ee--EEEeecCccceE
Q 021453 119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KL--VRLMVGDRHVVN 194 (312)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~--~~~~~~~~~~v~ 194 (312)
+... ..+ .+..+.......|..+ |.++.| .+.-..=++|+.+..+.+|+++.. .+ -..+......|.
T Consensus 185 ~~~~--~~~----~~~~kv~~~~ash~qp--vlsldy-as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~ 255 (323)
T KOG0322|consen 185 GDKI--IQL----PQSSKVESPNASHKQP--VLSLDY-ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVS 255 (323)
T ss_pred Ccee--ecc----ccccccccchhhccCc--ceeeee-chhhcCCcCCCccccceeeeeccccCcccccceEEecCCCcc
Confidence 6211 000 0111233334456655 999999 655555577888888999987632 22 122222345788
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 195 QLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 195 ~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.+..-||++.+||++.|+.||||+.++... ..+.-|...+ ....++++..++++++.|..|.+|++
T Consensus 256 gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv-n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 256 GVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV-NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce-eEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999998874 5566566555 56668899999999999999999986
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.64 E-value=2.3e-13 Score=113.99 Aligned_cols=202 Identities=12% Similarity=0.117 Sum_probs=125.1
Q ss_pred cceEEEEEcCCCCcEEEEE-eCCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--
Q 021453 31 IRLNAIVIDPRNPNYFAVG-GSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-- 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-- 106 (312)
.....++++|++ +.|+++ ..++.|.+|++.. +.+. ..... ........++++|++++++++
T Consensus 35 ~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~------------~~~~~--~~~~~p~~i~~~~~g~~l~v~~~ 99 (330)
T PRK11028 35 GQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALT------------FAAES--PLPGSPTHISTDHQGRFLFSASY 99 (330)
T ss_pred CCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceE------------Eeeee--cCCCCceEEEECCCCCEEEEEEc
Confidence 456788999998 565554 5688999999973 3210 00000 112345689999999977765
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCeeEE-
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVR- 184 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~- 184 (312)
.++.|.+|++...... ......+.+.. ....+++ +|++++++++ ..++.|.+||+.+...+.
T Consensus 100 ~~~~v~v~~~~~~g~~------------~~~~~~~~~~~---~~~~~~~-~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 100 NANCVSVSPLDKDGIP------------VAPIQIIEGLE---GCHSANI-DPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred CCCeEEEEEECCCCCC------------CCceeeccCCC---cccEeEe-CCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 3899999999642100 01111122211 2567888 8999988654 457999999997633221
Q ss_pred ------EeecCccceEEEEEcCCCCeEEEEeC-CCcEEEccCCC--CCC---CC---CCCChh-h-hhhhhccCCCCcee
Q 021453 185 ------LMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMP--TDF---PP---LPDNAE-K-IMKANKQGREDHSR 247 (312)
Q Consensus 185 ------~~~~~~~~v~~v~~~p~~~~l~t~~~-d~~i~iwd~~~--~~~---~~---~~~~~~-~-~~~~~~~~~~~~~l 247 (312)
.... ......++|+|+++++++++. +++|.+|++.. +.+ .. ++.... . ......++++++++
T Consensus 164 ~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 1111 234578999999999877775 89999999873 222 11 111100 0 00112356777777
Q ss_pred EEec-CCceEEEEEeccc
Q 021453 248 ITLT-PDVIMHVLRLQRR 264 (312)
Q Consensus 248 ~s~~-~d~~i~i~~~~~~ 264 (312)
++.. .++.|.+|++...
T Consensus 243 yv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 243 YACDRTASLISVFSVSED 260 (330)
T ss_pred EEecCCCCeEEEEEEeCC
Confidence 7764 4789999998654
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=2.8e-14 Score=110.88 Aligned_cols=206 Identities=12% Similarity=0.187 Sum_probs=150.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
..+|+|.+|+++. ..+|++..+..|.||.....++- ...+.+..|...|+.+.|+|....|+++ .|
T Consensus 10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w------------~~~htls~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLW------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCc------------eeceehhhhCcceeEEeecCCCCceeEccCC
Confidence 4689999999998 89999999999999998876521 3344448899999999999999988887 59
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee----EE
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL----VR 184 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~----~~ 184 (312)
..-++|....+. +.++.-.+..+... +++|.| +|.++.+++|+....|.||-+....- ..
T Consensus 77 rnayVw~~~~~~-------------~WkptlvLlRiNrA--At~V~W-sP~enkFAVgSgar~isVcy~E~ENdWWVsKh 140 (361)
T KOG1523|consen 77 RNAYVWTQPSGG-------------TWKPTLVLLRINRA--ATCVKW-SPKENKFAVGSGARLISVCYYEQENDWWVSKH 140 (361)
T ss_pred CCccccccCCCC-------------eeccceeEEEeccc--eeeEee-cCcCceEEeccCccEEEEEEEecccceehhhh
Confidence 999999984431 23455555556644 999999 99999999999999999998763221 11
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC----------CC-C-------ChhhhhhhhccCCCCce
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----------LP-D-------NAEKIMKANKQGREDHS 246 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~----------~~-~-------~~~~~~~~~~~~~~~~~ 246 (312)
.-+.+...|+++.|+|++-++++|+.|+..|++..--..+.. ++ + ....-+....+++++..
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~ 220 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR 220 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence 223466789999999999999999999999999743221100 00 0 01111122335666777
Q ss_pred eEEecCCceEEEEEeccc
Q 021453 247 RITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 247 l~s~~~d~~i~i~~~~~~ 264 (312)
|.=.+.|+++.+-|-...
T Consensus 221 lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 221 LAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eeEecCCCceEEeecCCC
Confidence 777788888877775443
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.1e-13 Score=109.63 Aligned_cols=194 Identities=10% Similarity=0.162 Sum_probs=142.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021453 32 RLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
.|--+-|+. .++|..+.+ +.+++++++.+..+ |...+ ...|.++.++. +.|+.+-..
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I------------Ce~~f----pt~IL~VrmNr--~RLvV~Lee 106 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI------------CEIFF----PTSILAVRMNR--KRLVVCLEE 106 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccCceE------------EEEec----CCceEEEEEcc--ceEEEEEcc
Confidence 455666766 355555443 45899998877633 33222 56788888865 466666555
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc-cCCceeeEEEEecCCCCEEEEe--ccCceEEEEeccCCeeEEEe
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSG--SDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~s~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|+|||+++. +++.++... .++..+..++. ++.+.+++-- ...|.|.+||..+-+++..+
T Consensus 107 ~IyIydI~~M----------------klLhTI~t~~~n~~gl~AlS~-n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 107 SIYIYDIKDM----------------KLLHTIETTPPNPKGLCALSP-NNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred cEEEEecccc----------------eeehhhhccCCCccceEeecc-CCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 5999999887 677666544 23223666666 6667788753 34789999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCc-EEEccCCCCC-CCCCCCCh-hhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD-FPPLPDNA-EKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~-i~iwd~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
..|.+.+.+++|+|+|.+|||+|..|+ |||+.+..+. +..++-.. ..-+....+++++.+|.+.+...+|++|.+..
T Consensus 170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999999999999999999998886 6999988765 45554322 22245556888999999999999999998864
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.1e-13 Score=110.62 Aligned_cols=246 Identities=11% Similarity=0.124 Sum_probs=164.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.+|.+-|+++.|+.++ ++|++|+.|..+++|++...-... .+.|+... -..|...|.+++|.....++.++
T Consensus 53 ~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---~~KPI~~~-----~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 53 REHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---TPKPIGVM-----EHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---CCCCceec-----cCccccceEEEEEccCCeeEecC
Confidence 3799999999999997 899999999999999987432111 11222211 13466899999999988899997
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEE
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVR 184 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~ 184 (312)
.+++|.+.|+++. +.+..+....+.+.|..+.- +|..+.|++.+.++.|.+||.+..+ +..
T Consensus 124 ~~~~~VI~HDiEt~----------------qsi~V~~~~~~~~~VY~m~~-~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 124 ERWGTVIKHDIETK----------------QSIYVANENNNRGDVYHMDQ-HPTDNTLIVVTRAKLVSFIDNRDRQNPIS 186 (609)
T ss_pred CCcceeEeeecccc----------------eeeeeecccCcccceeeccc-CCCCceEEEEecCceEEEEeccCCCCCCc
Confidence 5999999999986 45555543333345999998 8999999999999999999988654 222
Q ss_pred E--eecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC--------CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021453 185 L--MVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 185 ~--~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
. +.........+.|+|...- |++++..+-+.+||.+.+.. ..++... .......|++.+..+++....
T Consensus 187 ~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~-~~~M~~~~~~~G~Q~msiRR~ 265 (609)
T KOG4227|consen 187 LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN-TEWMGSLWSPSGNQFMSIRRG 265 (609)
T ss_pred eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccc-hhhhheeeCCCCCeehhhhcc
Confidence 2 1223356788999998765 78888889999999887541 1222211 112223366777777776665
Q ss_pred ceEEEEEecccCcc---------cee-------EeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021453 254 VIMHVLRLQRRQTL---------AYR-------ERRYNAADFESDEEEGETYLLGFSDSDAS 299 (312)
Q Consensus 254 ~~i~i~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 299 (312)
..-..+|+-..... .|. ..-.....++++.+.=.+|+|-+.-..++
T Consensus 266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds 327 (609)
T KOG4227|consen 266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDS 327 (609)
T ss_pred CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccc
Confidence 44444444332111 111 11112334666666666888877554444
No 195
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=1.9e-13 Score=117.67 Aligned_cols=203 Identities=19% Similarity=0.354 Sum_probs=158.0
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccC-CCccEEEEEE-ccCCC-eEE
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAY-SNTSE-LLI 104 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-~~~~~-~l~ 104 (312)
+|...+.++.|.+.+ ..++.++.|+.+.+|+...... ....+ .. +...+..+.+ ++++. +++
T Consensus 63 ~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 127 (466)
T COG2319 63 GHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEK-------------LIKSL-EGLHDSSVSKLALSSPDGNSILL 127 (466)
T ss_pred eccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCce-------------eEEEE-eccCCCceeeEEEECCCcceEEe
Confidence 578899999999998 7888888999999999987630 01111 22 1235666666 77777 555
Q ss_pred E-ec-CCcEEEEEcCC-CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCC
Q 021453 105 S-YN-DELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGG 180 (312)
Q Consensus 105 s-~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~ 180 (312)
. +. |+.+.+|+... . .....+..|... +..++| +|++.++++++. ++.+++|+...+
T Consensus 128 ~~~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 128 ASSSLDGTVKLWDLSTPG----------------KLIRTLEGHSES--VTSLAF-SPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred ccCCCCccEEEEEecCCC----------------eEEEEEecCccc--EEEEEE-CCCCCEEEecCCCCCceEEEEcCCC
Confidence 4 34 89999999986 4 566777888866 999999 999998888886 999999999988
Q ss_pred eeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCC-C-CCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021453 181 KLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-P-PLPDNAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~v~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
+.+..+.+|...|.+++|+|++. .+++++.|+.|++||...+.. . .+..|.... . ..+.+++..+++++.++.++
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~d~~~~ 266 (466)
T COG2319 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-V-SSFSPDGSLLASGSSDGTIR 266 (466)
T ss_pred ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-e-EeECCCCCEEEEecCCCcEE
Confidence 88899998999999999999998 566668999999998885553 3 355555543 1 14667667888999999999
Q ss_pred EEEecccCc
Q 021453 258 VLRLQRRQT 266 (312)
Q Consensus 258 i~~~~~~~~ 266 (312)
+|++.....
T Consensus 267 ~~~~~~~~~ 275 (466)
T COG2319 267 LWDLRSSSS 275 (466)
T ss_pred EeeecCCCc
Confidence 999876543
No 196
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9e-14 Score=115.95 Aligned_cols=244 Identities=14% Similarity=0.140 Sum_probs=168.0
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccc-------------ccccCC-------
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR-------------HLIGKN------- 87 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~------- 87 (312)
+|+..-+.|..+|+|..++|+|..--.|++||+....+.-....+..+-.|.+. ..+.-|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 478888999999999888899999999999999866543222222222111100 000111
Q ss_pred ----CccEEEEEEcc-CCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE
Q 021453 88 ----NIHITGLAYSN-TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 162 (312)
Q Consensus 88 ----~~~i~~~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~ 162 (312)
...-..++++. ...+++.++...|+-++++.+ ..+..|...... +.++.. ++...+
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG----------------rfL~P~~~~~~~--lN~v~i-n~~hgL 189 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG----------------RFLNPFETDSGE--LNVVSI-NEEHGL 189 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcccc----------------cccccccccccc--ceeeee-cCccce
Confidence 11223444443 345677777888999999988 677777766655 888888 899999
Q ss_pred EEEeccCceEEEEeccCCeeEEEeec------Ccc-----ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCCh
Q 021453 163 VMSGSDCGHLFIWKKKGGKLVRLMVG------DRH-----VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA 231 (312)
Q Consensus 163 l~~~~~dg~v~iwd~~~~~~~~~~~~------~~~-----~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 231 (312)
|++|+.+|.|-+||.++...+..+.. |.+ .|+++.|+.+|-.++.|..+|.+.|||+++.+......|.
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 99999999999999998777666542 332 4999999999999999999999999999998865555444
Q ss_pred h--hhhhhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEE
Q 021453 232 E--KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYL 290 (312)
Q Consensus 232 ~--~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 290 (312)
. ++....|...++.-.+.......+++|+-..+.....+++..+..++-.-.+.|.+++
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEE
Confidence 3 4445554444444444445567899999777766666666655555544444544443
No 197
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9.2e-13 Score=104.22 Aligned_cols=163 Identities=10% Similarity=0.182 Sum_probs=109.7
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-ecCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCeEEEec
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
...|+|++|-|.+..-|++|+. +-|.+|.....- ....+. ...+.+...+. .+| ..|++++|++||..+++++
T Consensus 140 QrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~---~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS 214 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIR---MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTAS 214 (445)
T ss_pred hcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccc---cccccchhheeCCCC-ceeeEEEEcCCCCEEeecc
Confidence 3469999999988788888887 458899875322 111000 00111111111 234 6899999999999998864
Q ss_pred --CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 108 --DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 108 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
|..|.|||..++ ..+......... ++-+.| +|++.+|++++-|+..++|..........
T Consensus 215 ~gsssi~iWdpdtg----------------~~~pL~~~glgg--~slLkw-SPdgd~lfaAt~davfrlw~e~q~wt~er 275 (445)
T KOG2139|consen 215 FGSSSIMIWDPDTG----------------QKIPLIPKGLGG--FSLLKW-SPDGDVLFAATCDAVFRLWQENQSWTKER 275 (445)
T ss_pred cCcceEEEEcCCCC----------------CcccccccCCCc--eeeEEE-cCCCCEEEEecccceeeeehhcccceecc
Confidence 889999999887 232222122222 788999 99999999999999999996544333334
Q ss_pred eecCccceEEEEEcCCCCeEE-EEeCCCcEEEcc
Q 021453 186 MVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWA 218 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~-t~~~d~~i~iwd 218 (312)
+....+.|...+|+|+|+.|+ +++ |.=++|.
T Consensus 276 w~lgsgrvqtacWspcGsfLLf~~s--gsp~lys 307 (445)
T KOG2139|consen 276 WILGSGRVQTACWSPCGSFLLFACS--GSPRLYS 307 (445)
T ss_pred eeccCCceeeeeecCCCCEEEEEEc--CCceEEE
Confidence 444556999999999999844 444 3344444
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.5e-13 Score=103.01 Aligned_cols=188 Identities=12% Similarity=0.142 Sum_probs=127.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE-ccCCCeEEEecCCc
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLISYNDEL 110 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~d~~ 110 (312)
.|++|...|.. +-++.++.|+.++.||+++++. ...+.+|++.+.++.- +.++++|..+.||+
T Consensus 116 eINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i---------------~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt 179 (325)
T KOG0649|consen 116 EINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI---------------QREYRGHTDYVHSVVGRNANGQILSGAEDGT 179 (325)
T ss_pred ccceeEeccCC-CcEEEecCCeEEEEEEecCCEE---------------EEEEcCCcceeeeeeecccCcceeecCCCcc
Confidence 58999999988 4555555899999999999972 2223899999999988 55556665568999
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC--------CceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021453 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--------SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
+++||+++. +.++.+..... .+.|.+++ .+..+|++|+ ...+.+|+++..++
T Consensus 180 vRvWd~kt~----------------k~v~~ie~yk~~~~lRp~~g~wigala---~~edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 180 VRVWDTKTQ----------------KHVSMIEPYKNPNLLRPDWGKWIGALA---VNEDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred EEEEecccc----------------ceeEEeccccChhhcCcccCceeEEEe---ccCceEEecC-CCceeEEeccCCCc
Confidence 999999987 55555543322 13355554 3567777665 57899999999988
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCC-CceeEEecCCceEEEE
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGRE-DHSRITLTPDVIMHVL 259 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~i~ 259 (312)
...+. ...+|..+.| ....+++++..+.|.-|.+.+.-....+......+... +... -..+...+....+.++
T Consensus 240 t~vfp-ipa~v~~v~F--~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s-~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 240 TCVFP-IPARVHLVDF--VDDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSAS-WQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eEEEe-cccceeEeee--ecceEEEeccccceeeeeeccEEEEeccCCccceeeec-ccCCceEEEEecccceeeeee
Confidence 87776 4467788888 44577888888889999887654333332333332222 2222 2333344455555555
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=5.4e-14 Score=126.57 Aligned_cols=231 Identities=12% Similarity=0.126 Sum_probs=150.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|+..|..++.++....+|++|+.||+|++|+.+.-.-. ...+............+..+.+.+.+..+|.+
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--------~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--------GGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcC--------cceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 378888899988866579999999999999998754310 01111111112246778899999999877776
Q ss_pred cCCcEEEEEcCCCcCC-------------------------------------CCCcCCcccccCCCCCceEecccCCce
Q 021453 107 NDELVYLFEKNMGLGP-------------------------------------SPLSLSPEDLQKREEPQVYSGHRNSQT 149 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (312)
.||.|.+.++...... ....+-.|+.........++.....+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 6999999998752100 001122222333233333333323345
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEcCCCC---e-EEEEe-CCCcEEEccCCCCC
Q 021453 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIP---M-FATCG-IEKTVKLWAPMPTD 223 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~---~-l~t~~-~d~~i~iwd~~~~~ 223 (312)
|++++. +|.+++++.|+..|.+.+||++-+.++..+. .+..++..+..+|..+ . +.+++ ..+.|.+|++.++.
T Consensus 1198 vTSi~i-dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1198 VTSIVI-DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred eeEEEe-cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999998 9999999999999999999999998888875 3446788888877544 4 44444 57889999998764
Q ss_pred CCC-CCCC-hhhhhh-----------------hhccCCCCceeEEecCCceEEEEEecccCcc
Q 021453 224 FPP-LPDN-AEKIMK-----------------ANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 224 ~~~-~~~~-~~~~~~-----------------~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
... +... ....+. .......+..+++++.|..|+.||.......
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 211 1111 000000 0011123568889999999999998766444
No 200
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.4e-14 Score=121.24 Aligned_cols=154 Identities=20% Similarity=0.334 Sum_probs=122.2
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
.+.|.++.|+|..+ +|++++. ..|+|||+..+.+ ++.+ ......|..++.+|.|..|+.+ .|
T Consensus 566 kG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqel--------------vKkL-~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQEL--------------VKKL-LTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred CCceeEEEecCCCc-eEEEEec-cceEEEehhHHHH--------------HHHH-hcCCeeeeeeeecCCCCeEEEecCC
Confidence 56799999999884 5555554 7899999987663 2233 2235678999999999755554 69
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc------CC--
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK------GG-- 180 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~------~~-- 180 (312)
+.+..||+.-.. ++.+++..|... +++|+| ++.-.++++|+.||++.|+.-. ..
T Consensus 629 ~k~~WfDldlss---------------kPyk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl 690 (733)
T KOG0650|consen 629 KKMCWFDLDLSS---------------KPYKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPL 690 (733)
T ss_pred CeeEEEEcccCc---------------chhHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence 999999997642 577888888866 999999 8999999999999999998621 11
Q ss_pred -eeEEEeecCccc----eEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021453 181 -KLVRLMVGDRHV----VNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 181 -~~~~~~~~~~~~----v~~v~~~p~~~~l~t~~~d~~i~iwd 218 (312)
-++..+++|... |.++.|||...+|++++.||+|++|.
T Consensus 691 iVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 691 IVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 246677888754 88999999999999999999999983
No 201
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.59 E-value=1.8e-14 Score=115.19 Aligned_cols=167 Identities=18% Similarity=0.281 Sum_probs=127.0
Q ss_pred CCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021453 87 NNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 87 ~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~ 164 (312)
...++.++.|.++.. .++++ .|..|++|-+........ -.+.+....+..|... |+.+.| +|+|..|+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------~~~V~y~s~Ls~H~~a--VN~vRf-~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------DMKVEYLSSLSRHTRA--VNVVRF-SPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------ceeEEEeecccCCcce--eEEEEE-cCCcCeee
Confidence 356799999999887 89996 699999999876521100 0111344556677755 999999 99999999
Q ss_pred EeccCceEEEEecc--------C--------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-C
Q 021453 165 SGSDCGHLFIWKKK--------G--------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-L 227 (312)
Q Consensus 165 ~~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-~ 227 (312)
+|+.+|.|.+|-.. + ....+.+.+|...|+.++|+|++.++++++.|.++++||+..+.+.. +
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence 99999999999754 2 12345667899999999999999999999999999999999988644 4
Q ss_pred CCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 228 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+|..-+ ....|.+.+.++++-+.|...+.+.+...
T Consensus 162 ~dh~~yv-qgvawDpl~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 162 DDHEHYV-QGVAWDPLNQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred ccccccc-ceeecchhhhhhhhhccCcccceeeeeee
Confidence 4454444 55567787888888888876666655433
No 202
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.1e-13 Score=114.77 Aligned_cols=193 Identities=10% Similarity=0.080 Sum_probs=122.9
Q ss_pred ccceEEEEEcCCCCcEEEEEe---CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 30 SIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
...+.+.+|+|+| +.|+..+ .+..|.+|++.+++... + ......+..++|+|+|+.|+..
T Consensus 198 ~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~-------l---------~~~~~~~~~~~~SPDG~~La~~ 260 (429)
T PRK03629 198 PQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQ-------V---------ASFPRHNGAPAFSPDGSKLAFA 260 (429)
T ss_pred CCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-------c---------cCCCCCcCCeEECCCCCEEEEE
Confidence 4578899999999 5665443 34579999998775210 0 1112234467999999966653
Q ss_pred -c-CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-c--eEEEEeccC
Q 021453 107 -N-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKG 179 (312)
Q Consensus 107 -~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-g--~v~iwd~~~ 179 (312)
. ++ .|++||+.++ +. ..+..+... +....| +|+|+.|+..+.+ + .|+++|+.+
T Consensus 261 ~~~~g~~~I~~~d~~tg----------------~~-~~lt~~~~~--~~~~~w-SPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 261 LSKTGSLNLYVMDLASG----------------QI-RQVTDGRSN--NTEPTW-FPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EcCCCCcEEEEEECCCC----------------CE-EEccCCCCC--cCceEE-CCCCCEEEEEeCCCCCceEEEEECCC
Confidence 2 44 5899999875 33 333333322 678888 9999988766653 3 455567776
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCce-
Q 021453 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI- 255 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~- 255 (312)
++. ..+..+........|+|+|+.++..+.+ ..|.+||+.++....+.... ......+++++..++..+.++.
T Consensus 321 g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~ 397 (429)
T PRK03629 321 GAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMG 397 (429)
T ss_pred CCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCc
Confidence 654 3343344455678999999998776543 35888999887754443221 1122347788888887776653
Q ss_pred --EEEEEec
Q 021453 256 --MHVLRLQ 262 (312)
Q Consensus 256 --i~i~~~~ 262 (312)
+.++++.
T Consensus 398 ~~l~~~~~~ 406 (429)
T PRK03629 398 SVLNLVSTD 406 (429)
T ss_pred eEEEEEECC
Confidence 4555543
No 203
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.2e-13 Score=106.76 Aligned_cols=207 Identities=15% Similarity=0.184 Sum_probs=140.4
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEecCC
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYNDE 109 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~ 109 (312)
..+..++|++.- ..+|++..|-.|++|+-... ++..+.......|++++|-|.+. .|+.+--+
T Consensus 99 ~dlr~~aWhqH~-~~fava~nddvVriy~ksst---------------~pt~Lks~sQrnvtclawRPlsaselavgCr~ 162 (445)
T KOG2139|consen 99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSST---------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA 162 (445)
T ss_pred cceeeEeechhh-hhhhhhccCcEEEEeccCCC---------------CCceecchhhcceeEEEeccCCcceeeeeecc
Confidence 457889999965 78899999999999998763 33333344567899999999874 67777778
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCCeeEEEeec
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~ 188 (312)
-|.+|...... ....... +......+.++.... .+|+++.| .++|..+++++. +..|+|||..++..+.....
T Consensus 163 gIciW~~s~tl---n~~r~~~-~~s~~~~qvl~~pgh-~pVtsmqw-n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~ 236 (445)
T KOG2139|consen 163 GICIWSDSRTL---NANRNIR-MMSTHHLQVLQDPGH-NPVTSMQW-NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK 236 (445)
T ss_pred eeEEEEcCccc---ccccccc-cccccchhheeCCCC-ceeeEEEE-cCCCCEEeecccCcceEEEEcCCCCCccccccc
Confidence 89999875321 0000000 111123333432222 56999999 999999988875 67899999999887655544
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCc-eeEEecCCceEEEEE
Q 021453 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLR 260 (312)
Q Consensus 189 ~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~~ 260 (312)
..+.++-+.|||++.+|+++.-|+..++|+..... .....-... -++.+.|+++++ +|++.+....++-..
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 55788899999999999999999999999654332 111111122 345666888655 455666665554443
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=6.4e-15 Score=119.67 Aligned_cols=197 Identities=15% Similarity=0.181 Sum_probs=163.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 111 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 111 (312)
+-+.+.++.+| +.++.|+.-|.|..+|..++++..++ . -...|.++.|-.+.+++|.+....+
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei------------~----v~Etv~Dv~~LHneq~~AVAQK~y~ 193 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEI------------N----VMETVRDVTFLHNEQFFAVAQKKYV 193 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeecccceeeeee------------e----hhhhhhhhhhhcchHHHHhhhhceE
Confidence 45678999999 89999999999999999999864321 1 1456888999999999999999999
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc
Q 021453 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 191 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 191 (312)
+|||-..- .+.-++.+. .|..+.| -|..-+|++++..|.++--|+.+|+.+..+....+
T Consensus 194 yvYD~~Gt-----------------ElHClk~~~---~v~rLeF-LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G 252 (545)
T KOG1272|consen 194 YVYDNNGT-----------------ELHCLKRHI---RVARLEF-LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG 252 (545)
T ss_pred EEecCCCc-----------------EEeehhhcC---chhhhcc-cchhheeeecccCCceEEEeechhhhhHHHHccCC
Confidence 99997542 333344332 2888999 78888899999999999999999999999988888
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021453 192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 192 ~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
.+..++-+|-+..+-+|...|+|.+|.+...+. ..+..|..++ ....+.+.+.+++|.+.|..++|||++....+
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V-~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV-SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCc-ceEEECCCCcEEeecccccceeEeeecccccc
Confidence 999999999999999999999999999998873 4455566666 55568899999999999999999999876533
No 205
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=8.9e-13 Score=114.16 Aligned_cols=194 Identities=10% Similarity=0.067 Sum_probs=121.1
Q ss_pred CccceEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE-
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI- 104 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 104 (312)
|...+.+.+|+|++ +.|+..+. +..|++||+.+++.. .+ ..........+|+|+|+.|+
T Consensus 202 ~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SpDG~~l~~ 264 (433)
T PRK04922 202 SAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRE---------------LV-ASFRGINGAPSFSPDGRRLAL 264 (433)
T ss_pred CCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEE---------------Ee-ccCCCCccCceECCCCCEEEE
Confidence 45578899999999 66666553 346999999876521 11 11223345789999998554
Q ss_pred Ee-cCC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEecc
Q 021453 105 SY-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKK 178 (312)
Q Consensus 105 s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~ 178 (312)
+. .++ .|++||+.++ + .+.+..+... ....+| +|++++|+..+. +| .|+++++.
T Consensus 265 ~~s~~g~~~Iy~~d~~~g----------------~-~~~lt~~~~~--~~~~~~-spDG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 265 TLSRDGNPEIYVMDLGSR----------------Q-LTRLTNHFGI--DTEPTW-APDGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred EEeCCCCceEEEEECCCC----------------C-eEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence 33 344 6999999876 2 3334444322 567888 999998877654 44 47777777
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC--
Q 021453 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-- 253 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-- 253 (312)
+++... +..+......++|+|+|+.++..+.++ .|.+||+.++....+.... .. ....++++++.++..+.+
T Consensus 325 ~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-~~-~~p~~spdG~~i~~~s~~~g 401 (433)
T PRK04922 325 GGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-LD-ESPSFAPNGSMVLYATREGG 401 (433)
T ss_pred CCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-CC-CCceECCCCCEEEEEEecCC
Confidence 765433 322333445789999999987765433 6999999887654443221 11 222467777766554432
Q ss_pred -ceEEEEEec
Q 021453 254 -VIMHVLRLQ 262 (312)
Q Consensus 254 -~~i~i~~~~ 262 (312)
+.+.++++.
T Consensus 402 ~~~L~~~~~~ 411 (433)
T PRK04922 402 RGVLAAVSTD 411 (433)
T ss_pred ceEEEEEECC
Confidence 345555543
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=4.8e-14 Score=116.62 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=117.9
Q ss_pred CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEEecCCcEEEEEcC
Q 021453 40 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKN 117 (312)
Q Consensus 40 p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~ 117 (312)
|.+ .-+++|-.-|.+.+.|....+..... .... .-.+..++++.|-|.+. +|++-.+|.+++||..
T Consensus 183 ~~g-~dllIGf~tGqvq~idp~~~~~sklf---------ne~r--~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~ 250 (636)
T KOG2394|consen 183 PKG-LDLLIGFTTGQVQLIDPINFEVSKLF---------NEER--LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE 250 (636)
T ss_pred CCC-cceEEeeccCceEEecchhhHHHHhh---------hhcc--cccccceEEEEEEeCCCceEEEEEecCceEEeecc
Confidence 444 57888888899999887753321111 1111 11247899999999765 5555579999999885
Q ss_pred CCcC---CCCCcCCccc---------ccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 118 MGLG---PSPLSLSPED---------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 118 ~~~~---~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.... +..+.++..+ ..+..++..+.--. ..|...+| +|+|++||+.+.||.++|||..+.+++..
T Consensus 251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~--g~in~f~F-S~DG~~LA~VSqDGfLRvF~fdt~eLlg~ 327 (636)
T KOG2394|consen 251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE--GSINEFAF-SPDGKYLATVSQDGFLRIFDFDTQELLGV 327 (636)
T ss_pred ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc--ccccceeE-cCCCceEEEEecCceEEEeeccHHHHHHH
Confidence 4321 1111111111 01112222222222 23888998 89999999999999999999998888777
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
++.--+...|++|||||+++++|++|-.|.||.+...++
T Consensus 328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV 366 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV 366 (636)
T ss_pred HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE
Confidence 776667899999999999999999999999999876653
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2e-12 Score=112.11 Aligned_cols=182 Identities=10% Similarity=0.064 Sum_probs=118.3
Q ss_pred CccceEEEEEcCCCCcEEEEEe---CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE-
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI- 104 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 104 (312)
|...+.+.+|+|+| +.|+..+ .+..|++||+.+++.. .+ ..+...+...+|+|+|+.|+
T Consensus 200 ~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 200 GSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE---------------LV-GNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred CCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE---------------Ee-ecCCCcccCcEECCCCCEEEE
Confidence 56689999999999 5666554 3468999999877521 11 23345567889999998655
Q ss_pred Ee-cCC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-C--ceEEEEecc
Q 021453 105 SY-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKK 178 (312)
Q Consensus 105 s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-d--g~v~iwd~~ 178 (312)
+. .++ .|++||+.++ ..+.+..+... .....| +|+|++|+..+. + ..|+++|+.
T Consensus 263 ~~~~~g~~~Iy~~d~~~~-----------------~~~~Lt~~~~~--~~~~~~-spDG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSG-----------------TTTRLTDSPAI--DTSPSY-SPDGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred EEecCCCceEEEEECCCC-----------------ceEEccCCCCc--cCceeE-cCCCCEEEEEECCCCCCeEEEEECC
Confidence 43 344 4888888775 23444444432 567888 999998887653 3 368888987
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEe
Q 021453 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITL 250 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 250 (312)
+++. ..+..+...+....|+|+|+.++..+.+ ..|.+||+.++....+... .. .....|+++++.++..
T Consensus 323 g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~-~~-~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 323 GSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG-FL-VEGPTWAPNGRVIMFF 394 (435)
T ss_pred CCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC-CC-CCCCeECCCCCEEEEE
Confidence 6654 3443344556778999999998877643 3688889866554333211 11 2333466776665543
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.9e-13 Score=118.08 Aligned_cols=218 Identities=16% Similarity=0.244 Sum_probs=152.5
Q ss_pred CCCccceEEEEEcCCCC--cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc------------------------
Q 021453 27 PMNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP------------------------ 80 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------------ 80 (312)
.+|..+++.+.+.|... .++.+.+.||.|++||...+.+..+.....++.....
T Consensus 54 ~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~ 133 (792)
T KOG1963|consen 54 EDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTF 133 (792)
T ss_pred ccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeec
Confidence 46889999999998765 4667899999999999998877654432222211100
Q ss_pred --------------------cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCce
Q 021453 81 --------------------RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV 140 (312)
Q Consensus 81 --------------------~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (312)
..+...|.. -..|.+++.|++.....+..+.+|+..... ........
T Consensus 134 s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~------------~~~~~~~~ 200 (792)
T KOG1963|consen 134 SKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT------------KHTSSRDI 200 (792)
T ss_pred ccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccc------------eeeccchh
Confidence 000111222 345667777776666677788888887641 00000011
Q ss_pred EecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC----CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021453 141 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 141 ~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~i 216 (312)
-..|.-. +++.++ +|+++++++|..||+|.+|.-.. ......+.=|...|++++|+++|.+|++|+.+|.+-+
T Consensus 201 ~~~Htf~--~t~~~~-spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 201 TVHHTFN--ITCVAL-SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred hhhhccc--ceeEEe-ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence 1223322 788998 99999999999999999996332 2234556668889999999999999999999999999
Q ss_pred ccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 217 WAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
|.+.+++..-++ ....++....+++++.+......|+.+.+...
T Consensus 278 Wq~~T~~kqfLP-RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 278 WQLETGKKQFLP-RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred EeecCCCccccc-ccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 999999854444 44444444557888888888889999998875
No 209
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.54 E-value=4.7e-12 Score=106.05 Aligned_cols=202 Identities=10% Similarity=0.107 Sum_probs=125.2
Q ss_pred ceEEEEEcCCCCcEEEEE-eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-cC
Q 021453 32 RLNAIVIDPRNPNYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-ND 108 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d 108 (312)
....++|+|++ +.++++ ..++.|.+|++.+..... ..+. . ..+......++++|+++++++ . .+
T Consensus 81 ~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~-----~~~~------~-~~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 81 SPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPV-----APIQ------I-IEGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred CceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCC-----Ccee------e-ccCCCcccEeEeCCCCCEEEEeeCCC
Confidence 45689999999 555555 458999999997432110 0000 0 112234567889999987655 4 48
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCC----ceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccC--Ce
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEP----QVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKG--GK 181 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~--~~ 181 (312)
+.|.+||+.+.. .+. ........ .....++| +|++++++++.. ++.|.+|++.. ++
T Consensus 148 ~~v~v~d~~~~g---------------~l~~~~~~~~~~~~g-~~p~~~~~-~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 148 DRIRLFTLSDDG---------------HLVAQEPAEVTTVEG-AGPRHMVF-HPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred CEEEEEEECCCC---------------cccccCCCceecCCC-CCCceEEE-CCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 999999997531 110 11111111 12578898 899999988876 99999999973 32
Q ss_pred --eEEEeecCc------cceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCC-CCCCCCChh--hhhhhhccCCCCceeEE
Q 021453 182 --LVRLMVGDR------HVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLPDNAE--KIMKANKQGREDHSRIT 249 (312)
Q Consensus 182 --~~~~~~~~~------~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~l~s 249 (312)
.+..+..+. .....+.++|++++++++. .++.|.+|++.... ...+.++.. .......++++++++++
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEE
Confidence 233332211 1234688999999988875 47899999985432 111111111 11122346677777776
Q ss_pred ec-CCceEEEEEecc
Q 021453 250 LT-PDVIMHVLRLQR 263 (312)
Q Consensus 250 ~~-~d~~i~i~~~~~ 263 (312)
.. .++.+.+|++..
T Consensus 291 a~~~~~~v~v~~~~~ 305 (330)
T PRK11028 291 AGQKSHHISVYEIDG 305 (330)
T ss_pred EEccCCcEEEEEEcC
Confidence 55 488999998864
No 210
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=2.3e-13 Score=120.68 Aligned_cols=196 Identities=16% Similarity=0.131 Sum_probs=150.7
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-CCcEEEE
Q 021453 36 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF 114 (312)
Q Consensus 36 ~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iw 114 (312)
..+.-.+ ..++.++.+..+.+||...+.+...++..+... -....-+-++++.-+++++. -+.|.+|
T Consensus 93 ~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-----------l~~~~~~g~s~~~~~i~~gsv~~~iivW 160 (967)
T KOG0974|consen 93 AKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-----------LYSSLIIGDSAEELYIASGSVFGEIIVW 160 (967)
T ss_pred cchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEE-----------EEeEEEEeccCcEEEEEeccccccEEEE
Confidence 3444444 678888899999999998776543332211111 01122334455555788874 9999999
Q ss_pred EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE-EeecCccce
Q 021453 115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVV 193 (312)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v 193 (312)
..... +....+.+|.+. +.++.| +.+|.++++.++|.++++|++.+.+... ..-+|+.+|
T Consensus 161 ~~~~d----------------n~p~~l~GHeG~--iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 161 KPHED----------------NKPIRLKGHEGS--IFSIVT-SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred ecccc----------------CCcceecccCCc--eEEEEE-ccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence 98743 233368899977 999999 9999999999999999999999988766 556899999
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 194 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 194 ~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
..++|+|+ .++|++.|.+.++|+.....+..+.+|...-+-....+.+....+|++.|+.+++|++...
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999 9999999999999988877777777777666555557778889999999999999987543
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.3e-13 Score=110.82 Aligned_cols=166 Identities=13% Similarity=0.148 Sum_probs=122.1
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC---C-e
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---E-L 102 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~-~ 102 (312)
+.|...|.++.|+|++ .+|++-+.| ..+||+..++..+... .+ .........+.|+.++ . +
T Consensus 183 ~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~---------t~----~~k~~~~~~cRF~~d~~~~~l~ 247 (398)
T KOG0771|consen 183 IAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARK---------TP----FSKDEMFSSCRFSVDNAQETLR 247 (398)
T ss_pred HhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhc---------CC----cccchhhhhceecccCCCceEE
Confidence 3488999999999999 799999998 9999999988533221 11 1223345566777766 2 4
Q ss_pred EEEe-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021453 103 LISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 180 (312)
Q Consensus 103 l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~ 180 (312)
+++. . -+.|+.|++....+... .+..+....+ +.|++++. +++|++++.|+.||.|.|++..+.
T Consensus 248 laa~~~~~~~v~~~~~~~w~~~~~----------l~~~~~~~~~---~siSsl~V-S~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 248 LAASQFPGGGVRLCDISLWSGSNF----------LRLRKKIKRF---KSISSLAV-SDDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred EEEecCCCCceeEEEeeeeccccc----------cchhhhhhcc---CcceeEEE-cCCCcEEEEeccCCcEEEEEecee
Confidence 4443 3 66788888765421100 0111222222 23999998 999999999999999999999988
Q ss_pred eeEEEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 181 KLVRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 181 ~~~~~~-~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
+.+... +.|...|+.+.|+|+.+++++.+.|.++.|..+.-
T Consensus 314 q~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 314 QRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 887766 47999999999999999999999999999988765
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=7e-13 Score=118.02 Aligned_cols=201 Identities=12% Similarity=0.142 Sum_probs=140.8
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-cCCcE
Q 021453 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELV 111 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i 111 (312)
.-+.|..+.+ .|++++.-..|+|||....++ ...+..+....|+++.-+- .|.++++| .||.|
T Consensus 1169 ~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~--------------~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsv 1233 (1387)
T KOG1517|consen 1169 LVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQV--------------VADIPYGSSTLVTALSADLVHGNIIAAGFADGSV 1233 (1387)
T ss_pred eeeehhhhCC-eEEecCCeeEEEEEeccccee--------------EeecccCCCccceeecccccCCceEEEeecCCce
Confidence 4567877764 555555579999999987763 2223234455566665443 35778776 79999
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeE--EEeec
Q 021453 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLV--RLMVG 188 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~--~~~~~ 188 (312)
++||.+.... -..+..++.|.....|..+.+ .+.|- .|++|+.+|.|++||++..... ..+..
T Consensus 1234 RvyD~R~a~~-------------ds~v~~~R~h~~~~~Iv~~sl-q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1234 RVYDRRMAPP-------------DSLVCVYREHNDVEPIVHLSL-QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred EEeecccCCc-------------cccceeecccCCcccceeEEe-ecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 9999987510 035566777776656888888 56443 5999999999999999864222 22233
Q ss_pred Cc--c-ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC------ChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021453 189 DR--H-VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD------NAEKIMKANKQGREDHSRITLTPDVIMHVL 259 (312)
Q Consensus 189 ~~--~-~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~ 259 (312)
|. + ..+++..|+..+.+|+|+. +.|+||++.+..+..+.. .......+..+++-.-++++|+.|+.+.++
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 33 3 4899999999999999998 999999998876544432 222223555567777788889999999998
Q ss_pred Eeccc
Q 021453 260 RLQRR 264 (312)
Q Consensus 260 ~~~~~ 264 (312)
.....
T Consensus 1379 s~~k~ 1383 (1387)
T KOG1517|consen 1379 SCEKP 1383 (1387)
T ss_pred ecCCc
Confidence 75433
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=5.6e-12 Score=98.17 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=115.7
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y- 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~- 106 (312)
..+|.++.+.++ .+++. ..+.|++|...+ -+.+.. + .. ........++.-+.+..+||. +
T Consensus 94 ~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~---------~--et--~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 94 NSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHV---------I--ET--RSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheee---------e--ec--ccCCCceEeecCCCCceEEEcCCC
Confidence 568999999985 34444 357899999873 221110 0 00 111222333322222236666 4
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce-EEEEeccCCeeEEE
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-v~iwd~~~~~~~~~ 185 (312)
.-|+|+|-|+.... ......+..|... |.+++. +.+|..+|+++..|+ |+|||..+|.++.+
T Consensus 157 k~GqvQi~dL~~~~--------------~~~p~~I~AH~s~--Iacv~L-n~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 157 KTGQVQIVDLASTK--------------PNAPSIINAHDSD--IACVAL-NLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ccceEEEEEhhhcC--------------cCCceEEEcccCc--eeEEEE-cCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 38999999997651 0134778899977 999998 999999999999887 79999999999999
Q ss_pred eecC--ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 186 MVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 186 ~~~~--~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
++.. ...|.+++|||+..+||.+|.-|+|.||.++...
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 8743 3579999999999999999999999999987644
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.51 E-value=8.3e-13 Score=102.80 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=127.7
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
..|...|+++.|+|.. +.|++++.|..-++|... .+++ .+...+..++..++++.|+|.+..+|+
T Consensus 52 s~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~W-------------kptlvLlRiNrAAt~V~WsP~enkFAV 117 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTW-------------KPTLVLLRINRAATCVKWSPKENKFAV 117 (361)
T ss_pred hhhCcceeEEeecCCC-CceeEccCCCCccccccCCCCee-------------ccceeEEEeccceeeEeecCcCceEEe
Confidence 3588999999999988 799999999999999994 4432 333344677899999999999998988
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE-ecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC----
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---- 179 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---- 179 (312)
++ ...|.||=++... ..-..+.+ +.++ ..|++++| +|++-+|++|+.|+..+++...-
T Consensus 118 gSgar~isVcy~E~EN-------------dWWVsKhikkPir--Stv~sldW-hpnnVLlaaGs~D~k~rVfSayIK~Vd 181 (361)
T KOG1523|consen 118 GSGARLISVCYYEQEN-------------DWWVSKHIKKPIR--STVTSLDW-HPNNVLLAAGSTDGKCRVFSAYIKGVD 181 (361)
T ss_pred ccCccEEEEEEEeccc-------------ceehhhhhCCccc--cceeeeec-cCCcceecccccCcceeEEEEeeeccc
Confidence 74 7788888776541 00111111 1233 34999999 89999999999999999997421
Q ss_pred --------------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 180 --------------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 180 --------------~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
|+++.++....+.|..+.|+|+|..|+-.+.|.++.+=|.....
T Consensus 182 ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 182 EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 22334443455789999999999999999999999999977654
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=2.2e-14 Score=116.61 Aligned_cols=188 Identities=14% Similarity=0.241 Sum_probs=145.0
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 109 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~ 109 (312)
..|.++.|-.+. ++||++ ....++|||-..-++- |. .. ...|..+.|-|..-+|+++ ..|
T Consensus 171 Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~GtElH------------Cl----k~-~~~v~rLeFLPyHfLL~~~~~~G 231 (545)
T KOG1272|consen 171 ETVRDVTFLHNE-QFFAVA-QKKYVYVYDNNGTELH------------CL----KR-HIRVARLEFLPYHFLLVAASEAG 231 (545)
T ss_pred hhhhhhhhhcch-HHHHhh-hhceEEEecCCCcEEe------------eh----hh-cCchhhhcccchhheeeecccCC
Confidence 457778887765 566655 6688999997654422 22 22 2457889999987788886 589
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
.++.-|+..+ +.+..+....+. +..++- +|-.-.+-+|...|+|.+|.....+++..+..|
T Consensus 232 ~L~Y~DVS~G----------------klVa~~~t~~G~--~~vm~q-NP~NaVih~GhsnGtVSlWSP~skePLvKiLcH 292 (545)
T KOG1272|consen 232 FLKYQDVSTG----------------KLVASIRTGAGR--TDVMKQ-NPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCH 292 (545)
T ss_pred ceEEEeechh----------------hhhHHHHccCCc--cchhhc-CCccceEEEcCCCceEEecCCCCcchHHHHHhc
Confidence 9999999988 777777766654 666666 888889999999999999999999999999999
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 190 ~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.++|.++++.|+|+|+||.+.|..++|||++... +.++.. ... ....+..+..+++.+....+.+|.
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~--a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHP--ASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCC--ccccccccccceeeecCCeeeeeh
Confidence 9999999999999999999999999999999875 333321 111 111333556788888899999995
No 216
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.4e-13 Score=108.62 Aligned_cols=180 Identities=13% Similarity=0.144 Sum_probs=132.8
Q ss_pred ccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEE
Q 021453 76 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 154 (312)
Q Consensus 76 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 154 (312)
+.||.+.+ .+|.+.|.++.|+.++++|+++ .|..+++|++...-. -...+++. +.+|.....|.+++
T Consensus 45 R~~~qKD~-~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~----------~k~~KPI~-~~~~~H~SNIF~L~ 112 (609)
T KOG4227|consen 45 RPFCQKDV-REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV----------RKTPKPIG-VMEHPHRSNIFSLE 112 (609)
T ss_pred cchhhhhh-hhhccccceeeeccCCeEEeecCCcceeeeechHHHHh----------hcCCCCce-eccCccccceEEEE
Confidence 44455555 6899999999999999999997 589999999864200 00003333 33444434599999
Q ss_pred EecCCCCEEEEeccCceEEEEeccCCeeEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-C--CCCCC
Q 021453 155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-F--PPLPD 229 (312)
Q Consensus 155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~--~~~~~ 229 (312)
| +....++++|..+++|...|+.+.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+... . ..++.
T Consensus 113 F-~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 113 F-DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred E-ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec
Confidence 9 88899999999999999999999988877652 23589999999999999999999999999987654 1 11223
Q ss_pred ChhhhhhhhccCC-CCceeEEecCCceEEEEEecccCccc
Q 021453 230 NAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLA 268 (312)
Q Consensus 230 ~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~~~~ 268 (312)
.....+..+.+.+ +..++++.+..+-+.+||++..+..+
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 3333334444566 56778888888889999987654443
No 217
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=1.4e-12 Score=102.04 Aligned_cols=212 Identities=16% Similarity=0.100 Sum_probs=132.7
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-- 107 (312)
..++.+++|+|+|..+|.+..-+-.|.+|.+.+.+.... ......+..++|+|+|++.+..+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~----------------~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL----------------PHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe----------------cccccCceeEEECCCCceeeeeecc
Confidence 568999999999988888889999999999998763211 11233456778888887665542
Q ss_pred CCc--EE-----------EEEcCCCc------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc
Q 021453 108 DEL--VY-----------LFEKNMGL------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 168 (312)
Q Consensus 108 d~~--i~-----------iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~ 168 (312)
|.. +. -+++.+-. .|....+-+|+.. -..+.+.-+.+ ..+..++| +|.+++|+.|+.
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~--Leykv~aYe~~-lG~k~v~w-sP~~qflavGsy 230 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV--LEYKVYAYERG-LGLKFVEW-SPCNQFLAVGSY 230 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch--hhheeeeeeec-cceeEEEe-ccccceEEeecc
Confidence 322 11 11111110 1222222222211 01111111221 12888999 999999999999
Q ss_pred CceEEEEeccCCeeEE------------------------------------------------------------Eee-
Q 021453 169 CGHLFIWKKKGGKLVR------------------------------------------------------------LMV- 187 (312)
Q Consensus 169 dg~v~iwd~~~~~~~~------------------------------------------------------------~~~- 187 (312)
|+.+++.+--+.++.. .++
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 9999887643322111 111
Q ss_pred -----cCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 188 -----GDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 188 -----~~~~~v~~v~~~p~~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.....+.-++|++|..+++|-. .-..+-+||++..++..+.....++ ....|.+....|+.......+++|.
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pi-raf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPI-RAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccce-eEEEeCCCCceEEEEcCCceEEEEc
Confidence 0112455689999999998876 3367999999998876655445555 4445788777777777778899997
Q ss_pred ec
Q 021453 261 LQ 262 (312)
Q Consensus 261 ~~ 262 (312)
..
T Consensus 390 ps 391 (447)
T KOG4497|consen 390 PS 391 (447)
T ss_pred CC
Confidence 54
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=2e-12 Score=98.85 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=103.9
Q ss_pred EEEEEccCCCeEEE-ec---C-------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC
Q 021453 92 TGLAYSNTSELLIS-YN---D-------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 160 (312)
Q Consensus 92 ~~~~~~~~~~~l~s-~~---d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~ 160 (312)
..+.|+|+|.+|+. .. | +...+|.++... .....+.-... .+|.+++| +|++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~---------------~~~~~i~l~~~-~~I~~~~W-sP~g 71 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN---------------IPVESIELKKE-GPIHDVAW-SPNG 71 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC---------------CccceeeccCC-CceEEEEE-CcCC
Confidence 46889999986554 22 2 224455553221 23333433222 23999999 9999
Q ss_pred CEEEE--eccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCCCCCCCChhhhh
Q 021453 161 EYVMS--GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLPDNAEKIM 235 (312)
Q Consensus 161 ~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~ 235 (312)
+.+++ |..++.|.+||++ ++.+..+. ...++.+.|+|+|++|++++. .|.|.+||.+..+......+.. .
T Consensus 72 ~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~--~ 146 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD--A 146 (194)
T ss_pred CEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc--E
Confidence 98754 4467899999997 66676664 457789999999999998874 4679999999766433222333 3
Q ss_pred hhhccCCCCceeEEecC------CceEEEEEeccc
Q 021453 236 KANKQGREDHSRITLTP------DVIMHVLRLQRR 264 (312)
Q Consensus 236 ~~~~~~~~~~~l~s~~~------d~~i~i~~~~~~ 264 (312)
....|+++++++++.+. |..++||++...
T Consensus 147 t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 147 TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 45679999999998764 688899997543
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=5.6e-12 Score=108.92 Aligned_cols=185 Identities=11% Similarity=0.045 Sum_probs=113.6
Q ss_pred CccceEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+...+.+.+|+|++ +.|+..+. ...|.+||+.+++.. .+ ......+...+|+|+|+.|+.
T Consensus 194 ~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~ 256 (427)
T PRK02889 194 SPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRR---------------VV-ANFKGSNSAPAWSPDGRTLAV 256 (427)
T ss_pred CCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEE
Confidence 46678999999999 66666543 245999999877521 01 112334567899999986654
Q ss_pred -e-cCCcEEEE--EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEe--cc
Q 021453 106 -Y-NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWK--KK 178 (312)
Q Consensus 106 -~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd--~~ 178 (312)
. .++...+| |+.++ ..+.+..+... .....| +|+|+.|+..+. +|...+|. +.
T Consensus 257 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~w-SpDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 257 ALSRDGNSQIYTVNADGS-----------------GLRRLTQSSGI--DTEPFF-SPDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred EEccCCCceEEEEECCCC-----------------CcEECCCCCCC--CcCeEE-cCCCCEEEEEecCCCCcEEEEEECC
Confidence 4 47665555 44443 23344433322 566788 999998876554 45555554 44
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021453 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
+++.. .+..+.......+|+|+|++++..+.++ .|.+||+.++....+..... .....|+++++.++..+.+
T Consensus 317 ~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~--~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 317 GGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTR--DESPSFAPNGRYILYATQQ 391 (427)
T ss_pred CCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCC--ccCceECCCCCEEEEEEec
Confidence 44432 2222223344678999999988777554 69999998876544432211 1233467777766655543
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.4e-12 Score=112.70 Aligned_cols=161 Identities=11% Similarity=0.039 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcEEEEE-eCCCeEEEE--EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-c
Q 021453 33 LNAIVIDPRNPNYFAVG-GSDEYARVY--DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N 107 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~-~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~ 107 (312)
...++|+|++ +.|+.+ +.+|.+.|| |+.+++. ..+ ..+...+....|+|+|+.|+. + .
T Consensus 250 ~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~---------------~~l-t~~~~~~~~~~wSpDG~~i~f~s~~ 312 (429)
T PRK01742 250 NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTP---------------SQL-TSGAGNNTEPSWSPDGQSILFTSDR 312 (429)
T ss_pred cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCe---------------Eee-ccCCCCcCCEEECCCCCEEEEEECC
Confidence 3468999999 555554 568876666 5544431 111 334556778999999996654 4 3
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
++...||++.... .....+ .+.. ....| +|+|++|+..+.++ +.+||+.+++......
T Consensus 313 ~g~~~I~~~~~~~---------------~~~~~l-~~~~----~~~~~-SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 313 SGSPQVYRMSASG---------------GGASLV-GGRG----YSAQI-SADGKTLVMINGDN-VVKQDLTSGSTEVLSS 370 (429)
T ss_pred CCCceEEEEECCC---------------CCeEEe-cCCC----CCccC-CCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence 7788888765421 112222 2221 34677 99999998887765 5569998887543322
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccC---CCCCCCCCCCChhhh
Q 021453 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPTDFPPLPDNAEKI 234 (312)
Q Consensus 188 ~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~---~~~~~~~~~~~~~~~ 234 (312)
.+ ....+.|+|+|++|+.++.++.+++|.+ .......+..+...+
T Consensus 371 ~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~ 418 (429)
T PRK01742 371 TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV 418 (429)
T ss_pred CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCC
Confidence 22 2356789999999999998998887764 344445555444433
No 221
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.48 E-value=1.4e-12 Score=112.90 Aligned_cols=196 Identities=14% Similarity=0.069 Sum_probs=136.4
Q ss_pred CeeecccCcccee--eEEecccccCCcCCCCccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecCCC-----CC-
Q 021453 1 MWQFDLRSDSATR--LFYCSSFSENSKQPMNSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPI-----SS- 71 (312)
Q Consensus 1 v~~wd~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~- 71 (312)
|-+||++.....+ .++... ..|+.+++.+.|-.+.. .-|++++.||.|..|+++...+.... ..
T Consensus 267 V~lWD~~~~~~~~~s~ls~~~-------~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~ 339 (555)
T KOG1587|consen 267 VVLWDLRKGSDTPPSGLSALE-------VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH 339 (555)
T ss_pred EEEEEccCCCCCCCccccccc-------ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc
Confidence 4689999876532 233322 24999999999976431 35888999999999988643321000 00
Q ss_pred -----CC------------------------Cc-------------ccccccccccCCCccEEEEEEccCCC-eEEEecC
Q 021453 72 -----DT------------------------PV-------------DTFCPRHLIGKNNIHITGLAYSNTSE-LLISYND 108 (312)
Q Consensus 72 -----~~------------------------~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d 108 (312)
.. .+ ..+........|.++|.++.++|-+. ++.++.|
T Consensus 340 ~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gD 419 (555)
T KOG1587|consen 340 KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGD 419 (555)
T ss_pred cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeecc
Confidence 00 00 00001112345788999999999886 5555679
Q ss_pred CcEEEEEcC-CCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccC--CeeEE
Q 021453 109 ELVYLFEKN-MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKG--GKLVR 184 (312)
Q Consensus 109 ~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~--~~~~~ 184 (312)
-+++||... .. .++..+..+... +++++| +|.. ..++++..||.|.+||+.. ..++.
T Consensus 420 W~vriWs~~~~~----------------~Pl~~~~~~~~~--v~~vaW-SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 420 WTVRIWSEDVIA----------------SPLLSLDSSPDY--VTDVAW-SPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred ceeEeccccCCC----------------Ccchhhhhccce--eeeeEE-cCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 999999876 33 455556656644 999999 7765 5677888899999999864 34555
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
..+.+....+.+.|++.|+.++.|...|++.+|++...
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 55555666778889999999999999999999998654
No 222
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=3.1e-13 Score=117.43 Aligned_cols=212 Identities=16% Similarity=0.221 Sum_probs=138.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
+||.+.|+.++.+.++ .++++++.|..|++|.+..+. +..++.+|.+.|++|+|+|-. +++
T Consensus 229 rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~---------------pvsvLrghtgavtaiafsP~~---sss 289 (1113)
T KOG0644|consen 229 RGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA---------------PVSVLRGHTGAVTAIAFSPRA---SSS 289 (1113)
T ss_pred CCCccccchhccchhh-hhhhhcccCceEEEEecCCCc---------------hHHHHhccccceeeeccCccc---cCC
Confidence 6899999999999988 799999999999999999885 444558999999999999964 445
Q ss_pred cCCcEEEEEcC-CCc--CCCCCcCCccc-------------ccCCCCCceEe--------cccCCceeeEEEEecCCCCE
Q 021453 107 NDELVYLFEKN-MGL--GPSPLSLSPED-------------LQKREEPQVYS--------GHRNSQTVKGVNFFGPNDEY 162 (312)
Q Consensus 107 ~d~~i~iwd~~-~~~--~~~~~~~~~~~-------------~~~~~~~~~~~--------~~~~~~~v~~v~~~s~~~~~ 162 (312)
.||++++||.+ ... .|.+..+...+ +.++..--.-. .+... +.-+.+.+....+
T Consensus 290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~--lif~t~ssd~~~~ 367 (1113)
T KOG0644|consen 290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL--LIFVTRSSDLSSI 367 (1113)
T ss_pred CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc--eEEEecccccccc
Confidence 69999999987 111 01111111000 11110000000 11111 1111111111234
Q ss_pred EEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-CC-CCCChhhhhhhhc
Q 021453 163 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-PP-LPDNAEKIMKANK 239 (312)
Q Consensus 163 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-~~-~~~~~~~~~~~~~ 239 (312)
.+++-.+-.+++|++.+|+..+.+.+|...++.+.+||-+.. ..+++.||...|||+-.+.. +. ..+|.+ + -..+
T Consensus 368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k-l-~d~k 445 (1113)
T KOG0644|consen 368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK-L-VDGK 445 (1113)
T ss_pred ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce-e-eccc
Confidence 455556778999999999999999999999999999997765 67889999999999877653 22 222222 2 2334
Q ss_pred cCCCCceeEEecCCceEEEEEe
Q 021453 240 QGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 240 ~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
++.++..++....-|.+.|+..
T Consensus 446 FSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 446 FSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred cCCCCceEecCCCCCceEEecc
Confidence 6666655555444466666653
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.7e-12 Score=108.78 Aligned_cols=165 Identities=13% Similarity=0.095 Sum_probs=105.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c-
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N- 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~- 107 (312)
.+...+|+|+|..++++.+.+| .|++||+.+++.. .+ ..+...+....|+|+|+.|+.. .
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------------~l-t~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------------QV-TDGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------------Ec-cCCCCCcCceEECCCCCEEEEEeCC
Confidence 3456899999944444445555 5888999877521 11 2223456788999999977654 3
Q ss_pred CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---ceEEEEeccCCee
Q 021453 108 DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKL 182 (312)
Q Consensus 108 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~ 182 (312)
++ .|+++|+.++ ..+.+...... .....| +|+|++|+..+.+ ..|.+||+.+++.
T Consensus 308 ~g~~~Iy~~d~~~g-----------------~~~~lt~~~~~--~~~~~~-SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 308 AGRPQVYKVNINGG-----------------APQRITWEGSQ--NQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred CCCceEEEEECCCC-----------------CeEEeecCCCC--ccCEEE-CCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 34 4555566554 22333333322 556788 9999998776543 3588899988764
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCc---EEEccCCCCCCCCCCCChhhh
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKT---VKLWAPMPTDFPPLPDNAEKI 234 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~---i~iwd~~~~~~~~~~~~~~~~ 234 (312)
. .+... .......|+|+|++++.++.++. +.++++.+.....+..+...+
T Consensus 368 ~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~ 420 (429)
T PRK03629 368 Q-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV 420 (429)
T ss_pred E-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCc
Confidence 3 33321 22346789999999988887764 778888776665565544443
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.3e-12 Score=104.27 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=129.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 78 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 78 (312)
+++||+... .++++.++.+.....---+--++++.|-|. . +.||+++.-+.+++||.+.++ +|+..|
T Consensus 175 lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qR--------RPV~~f 243 (412)
T KOG3881|consen 175 LKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQR--------RPVAQF 243 (412)
T ss_pred eeeeecccc--eeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccC--------cceeEe
Confidence 579999875 788888877654333223445678889875 4 799999999999999999775 455544
Q ss_pred cccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-EecccCCceeeEEEEe
Q 021453 79 CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFF 156 (312)
Q Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~ 156 (312)
.....+++++...|.++++.++ .-+.+..||++++ +.... +.+..+. ++++..
T Consensus 244 ------d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~----------------kl~g~~~kg~tGs--irsih~- 298 (412)
T KOG3881|consen 244 ------DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG----------------KLLGCGLKGITGS--IRSIHC- 298 (412)
T ss_pred ------ccccCcceeeeecCCCcEEEEecccchhheecccCc----------------eeeccccCCccCC--cceEEE-
Confidence 3446789999999999998888 5999999999987 55544 7777766 999998
Q ss_pred cCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCC
Q 021453 157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP 203 (312)
Q Consensus 157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 203 (312)
+|.++++++++-|..|+|+|+.+.+++..... ...++++.+.++-+
T Consensus 299 hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~~n 344 (412)
T KOG3881|consen 299 HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDDVN 344 (412)
T ss_pred cCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCCcc
Confidence 89999999999999999999999777655432 34567777766543
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=2.3e-11 Score=105.39 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=118.5
Q ss_pred CccceEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+...+...+|+|++ +.|+.+..+ ..|++||+.+++.. .+ ..+...+..++|+|+|+.|+.
T Consensus 188 ~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~---------------~~-~~~~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 188 SREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQRE---------------KV-ASFPGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred CCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEE
Confidence 34568889999999 666665433 47999999877521 01 223344567899999985553
Q ss_pred -ec-C--CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEecc
Q 021453 106 -YN-D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKK 178 (312)
Q Consensus 106 -~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~ 178 (312)
.. + ..|++|++.++ ....+..+... .....| +|++++|+..+. .+ .|+++++.
T Consensus 251 ~~~~~~~~~i~~~d~~~~-----------------~~~~l~~~~~~--~~~~~~-s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGK-----------------QLTRLTNGPGI--DTEPSW-SPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred EECCCCCccEEEEECCCC-----------------CEEECCCCCCC--CCCEEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence 32 3 46899998765 22333333322 456678 899998876554 33 68888888
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021453 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
+++.. .+..+...+..+.|+|++++++.++.++ .|.+||+.++....+..... . ....+++++..++..+.+
T Consensus 311 ~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~-~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 311 GGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL-D-ESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC-C-CCceECCCCCEEEEEEeC
Confidence 76643 4443455667889999999988888765 78899988765443332211 1 122356666666555444
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=1.7e-11 Score=95.53 Aligned_cols=159 Identities=10% Similarity=0.095 Sum_probs=121.6
Q ss_pred CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE-e
Q 021453 88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-G 166 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~-~ 166 (312)
..+|.++.+.++ .|+....+.|+||...+.. +.++.+....+++-+.+++- ..+..+|+. |
T Consensus 94 ~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~---------------k~l~~~et~~NPkGlC~~~~-~~~k~~LafPg 155 (346)
T KOG2111|consen 94 NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNP---------------KLLHVIETRSNPKGLCSLCP-TSNKSLLAFPG 155 (346)
T ss_pred ccceeeEEEcCC--eEEEEecCeEEEEEcCCCh---------------hheeeeecccCCCceEeecC-CCCceEEEcCC
Confidence 567889988765 6777788999999998541 56666665554444666653 334445543 4
Q ss_pred ccCceEEEEeccCCee--EEEeecCccceEEEEEcCCCCeEEEEeCCCc-EEEccCCCCCC-CCCC-CChhhhhhhhccC
Q 021453 167 SDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTDF-PPLP-DNAEKIMKANKQG 241 (312)
Q Consensus 167 ~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~-i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~ 241 (312)
-.-|.|.|-|+...+. -..+.+|...|.+++.+.+|..+||+|..|+ |||||..+++. ..+. +...+-+....++
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 4579999999886554 4678899999999999999999999999987 79999998873 4443 4444455666799
Q ss_pred CCCceeEEecCCceEEEEEeccc
Q 021453 242 REDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 242 ~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
++..+|+..|.-|+++|+.++..
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999998753
No 227
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.42 E-value=1.1e-12 Score=111.50 Aligned_cols=147 Identities=16% Similarity=0.261 Sum_probs=119.5
Q ss_pred cEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC
Q 021453 90 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 169 (312)
Q Consensus 90 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d 169 (312)
.|..++|.|||..|+.+.+..+.+||...+ ..++++++|++. |.+++| +.+|+.+++|+.|
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG----------------~llqtLKgHKDt--VycVAy-s~dGkrFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG----------------TLLQPLKGHKDT--VYCVAY-AKDGKRFASGSAD 74 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCc----------------ccccccccccce--EEEEEE-ccCCceeccCCCc
Confidence 688999999999998888999999999988 799999999976 999999 9999999999999
Q ss_pred ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE
Q 021453 170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 170 g~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
..|.+|...- +-+.. ..|...|.|+.|+|-...|++++. ...-+|......+.... ....+ ....|..++.+++-
T Consensus 75 K~VI~W~~kl-EG~Lk-YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~k-ss~R~-~~CsWtnDGqylal 149 (1081)
T KOG1538|consen 75 KSVIIWTSKL-EGILK-YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHK-SSSRI-ICCSWTNDGQYLAL 149 (1081)
T ss_pred eeEEEecccc-cceee-eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhhh-hheeE-EEeeecCCCcEEEE
Confidence 9999998652 22222 259999999999999999999984 45678887655443222 12223 33347789999999
Q ss_pred ecCCceEEEEE
Q 021453 250 LTPDVIMHVLR 260 (312)
Q Consensus 250 ~~~d~~i~i~~ 260 (312)
|-.+|+|.+-+
T Consensus 150 G~~nGTIsiRN 160 (1081)
T KOG1538|consen 150 GMFNGTISIRN 160 (1081)
T ss_pred eccCceEEeec
Confidence 99999998875
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=8.6e-11 Score=102.01 Aligned_cols=207 Identities=9% Similarity=0.059 Sum_probs=129.7
Q ss_pred CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec----CCcEEEEEcCCCcCCCCCcCC
Q 021453 53 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLS 128 (312)
Q Consensus 53 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~ 128 (312)
..|.++|..... ...+ ..|...+...+|+|+|+.|+..+ +..|++||+.++
T Consensus 182 ~~l~~~d~dg~~---------------~~~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g--------- 236 (435)
T PRK05137 182 KRLAIMDQDGAN---------------VRYL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG--------- 236 (435)
T ss_pred eEEEEECCCCCC---------------cEEE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---------
Confidence 368888876443 1222 45677899999999999766532 468999999876
Q ss_pred cccccCCCCCceEecccCCceeeEEEEecCCCCEEE-EeccCc--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE
Q 021453 129 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 205 (312)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l 205 (312)
. .+.+..+... +...+| +|+|+.|+ +.+.++ .|++||+.+++. ..+..+........|+|+|+.+
T Consensus 237 -------~-~~~l~~~~g~--~~~~~~-SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 237 -------Q-RELVGNFPGM--TFAPRF-SPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred -------c-EEEeecCCCc--ccCcEE-CCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEE
Confidence 2 2344444433 677888 99998775 445555 478889887765 4455565666789999999988
Q ss_pred EEEeC-CC--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC---ceEEEEEecccCccc--------eeE
Q 021453 206 ATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQRRQTLA--------YRE 271 (312)
Q Consensus 206 ~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~i~~~~~~~~~~--------~~~ 271 (312)
+..+. ++ .|.++|+.++....+....... ....|++++..++..+.+ ..+.+|++....... ...
T Consensus 305 ~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~-~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~ 383 (435)
T PRK05137 305 VFESDRSGSPQLYVMNADGSNPRRISFGGGRY-STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPT 383 (435)
T ss_pred EEEECCCCCCeEEEEECCCCCeEEeecCCCcc-cCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCe
Confidence 77663 33 6888898877654443222222 234478888877665433 356777764322111 114
Q ss_pred eecCCCccCCCC--CC----CeEEEeecCCCC
Q 021453 272 RRYNAADFESDE--EE----GETYLLGFSDSD 297 (312)
Q Consensus 272 ~~~~~~~~~~~~--~~----~~v~~~~~~~~~ 297 (312)
++|++..+.... .. ..+|.++.+.+.
T Consensus 384 ~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 384 WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 566665554321 11 357777775543
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3e-11 Score=104.68 Aligned_cols=158 Identities=11% Similarity=0.022 Sum_probs=101.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-- 107 (312)
...+.+|+|++..++++.+.+| .|++||+.+++.. .+ ..+.......+|+|+|+.|+..+
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~---------------~l-t~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT---------------RL-TNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE---------------EC-ccCCCCccceEECCCCCEEEEEECC
Confidence 3457899999954555656655 5999999877521 11 22333446789999999776643
Q ss_pred CCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCCee
Q 021453 108 DEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKL 182 (312)
Q Consensus 108 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~ 182 (312)
++. |+++++.++ + .+.+..... .....+| +|+|++|+..+.++ .|.+||+.+++.
T Consensus 313 ~g~~~iy~~dl~~g----------------~-~~~lt~~g~--~~~~~~~-SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 313 GGRPQIYRVAASGG----------------S-AERLTFQGN--YNARASV-SPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred CCCceEEEEECCCC----------------C-eEEeecCCC--CccCEEE-CCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 444 777777654 2 222322222 2456788 99999988765433 699999988775
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCC
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPL 227 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~ 227 (312)
. .+. +........|+|+|++++..+.+ ..|.++++.+.....+
T Consensus 373 ~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 373 R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 4 443 22344567999999987766643 4578888866544434
No 230
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.8e-10 Score=100.01 Aligned_cols=183 Identities=11% Similarity=0.009 Sum_probs=112.1
Q ss_pred CccceEEEEEcCCCCcEEEEEe-CC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGG-SD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+...+...+|+|++ +.|+..+ .+ ..|.+|++.+++... + ......+...+|+|+|+.|+.
T Consensus 197 ~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~---------------l-~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 197 SREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ---------------I-TNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred CCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE---------------c-cCCCCCcCCeEECCCCCEEEE
Confidence 45678899999999 5665544 32 468889998775211 1 111233446899999986664
Q ss_pred -e-cCC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-C--ceEEEEecc
Q 021453 106 -Y-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKK 178 (312)
Q Consensus 106 -~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-d--g~v~iwd~~ 178 (312)
. .++ .|+++|+.++ ....+..+... .....| +|+++.|+..+. + ..|+++++.
T Consensus 260 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~~-spDg~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASR-----------------QLSRVTNHPAI--DTEPFW-GKDGRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred EEccCCCceEEEEECCCC-----------------CeEEcccCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence 3 344 6888898875 22334333322 556778 999998766553 3 367788887
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-C--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEec
Q 021453 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT 251 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 251 (312)
+++... +...........|+|+++.++..+.+ + .|.+||+.++....+..... . ....+++++..++..+
T Consensus 320 ~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~-~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 320 GGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSL-D-ESPSVAPNGTMLIYAT 392 (430)
T ss_pred CCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCC-C-CCceECCCCCEEEEEE
Confidence 776433 22122233457899999998777643 3 58889988876544432111 1 1223666666655443
No 231
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=6.1e-11 Score=103.86 Aligned_cols=204 Identities=14% Similarity=0.206 Sum_probs=146.8
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEE
Q 021453 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY 112 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~ 112 (312)
.++.+++.+ ++.+.. .+..+.+|+..++. ...+....-..|.-.+++.+++|++.++|++ .||+|.
T Consensus 164 ~~I~~~~~g-e~~~i~-~~~~~~~~~v~~~~-----------~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~ 230 (792)
T KOG1963|consen 164 KSIVDNNSG-EFKGIV-HMCKIHIYFVPKHT-----------KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRIL 230 (792)
T ss_pred ccEEEcCCc-eEEEEE-EeeeEEEEEecccc-----------eeeccchhhhhhcccceeEEeccccceEEEeccCCcEE
Confidence 567778877 455544 45778889988643 1113333335677779999999999999998 599999
Q ss_pred EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc
Q 021453 113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 192 (312)
Q Consensus 113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 192 (312)
+|.--.... .-.....+.-|... |.+++| +++|.+|++|+.+|.+.+|.+.+++ .+-++.-.++
T Consensus 231 vw~d~~~~~------------~~~t~t~lHWH~~~--V~~L~f-S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~ 294 (792)
T KOG1963|consen 231 VWRDFGSSD------------DSETCTLLHWHHDE--VNSLSF-SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSP 294 (792)
T ss_pred EEecccccc------------ccccceEEEecccc--cceeEE-ecCCceEeecccceEEEEEeecCCC-cccccccCCe
Confidence 996433100 00344667777766 999999 9999999999999999999999988 4555667789
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC---C-------hhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 193 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD---N-------AEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 193 v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~---~-------~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
|..+.++|++.+.+....|..|.+-...+..+ .++.+ . ...........+..+.++-.+..+.++.+|+
T Consensus 295 I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 295 ILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred eEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 99999999999999999999999988755432 11111 1 1222333334455567777888899999998
Q ss_pred cccCc
Q 021453 262 QRRQT 266 (312)
Q Consensus 262 ~~~~~ 266 (312)
.+...
T Consensus 375 ~td~~ 379 (792)
T KOG1963|consen 375 YTDST 379 (792)
T ss_pred cccce
Confidence 76543
No 232
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=2.6e-12 Score=119.88 Aligned_cols=190 Identities=13% Similarity=0.190 Sum_probs=144.3
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
|-..|.++.=||.. .+.+||+.||.+++|....++.+. +.. ..-...++.+.|+.+|..+..+ .
T Consensus 2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~-----------~~r---t~g~s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVV-----------CFR---TAGNSRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred ccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEE-----------Eee---ccCcchhhhhhhcccCCceeeecc
Confidence 34568888889988 589999999999999998776321 111 2223788999999999877776 6
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec---cCceEEEEeccC--Cee
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKKG--GKL 182 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~---~dg~v~iwd~~~--~~~ 182 (312)
||.+.+|.... ++....+.|... ..+..|. +..+++++ .++.+.+||..- +..
T Consensus 2272 dg~l~l~q~~p-----------------k~~~s~qchnk~--~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2272 DGDLSLWQASP-----------------KPYTSWQCHNKA--LSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred CCceeecccCC-----------------cceeccccCCcc--ccceeee---ehhhhccccCCCCCcccchhcccCcccc
Confidence 99999999874 465666677654 8888883 35666654 578999999542 222
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
+.. ..|.+.++++++-|..+.|++||.+|.|++||++...+ ++++. +. ...++++++..|.++||++
T Consensus 2330 ~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2330 LVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred eee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEc
Confidence 222 78999999999999999999999999999999987765 22221 22 4568999999999999999
Q ss_pred cccCcc
Q 021453 262 QRRQTL 267 (312)
Q Consensus 262 ~~~~~~ 267 (312)
...+.+
T Consensus 2398 s~~~ll 2403 (2439)
T KOG1064|consen 2398 SEFGLL 2403 (2439)
T ss_pred cccchh
Confidence 877444
No 233
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.1e-12 Score=109.03 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=118.5
Q ss_pred cccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE-ecccCCceeeEEEEecC-C
Q 021453 83 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGP-N 159 (312)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~s~-~ 159 (312)
-+.+|.+-|.+++|+.+|.+|++|+ |-.+.|||.-.. +++..+ .+|... |.++.|.+. +
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----------------KllhsI~TgHtaN--IFsvKFvP~tn 106 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----------------KLLHSISTGHTAN--IFSVKFVPYTN 106 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhc----------------ceeeeeecccccc--eeEEeeeccCC
Confidence 3489999999999999999999986 788999998765 455444 578866 999999433 3
Q ss_pred CCEEEEeccCceEEEEeccCC----------eeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCCCCCC
Q 021453 160 DEYVMSGSDCGHLFIWKKKGG----------KLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLP 228 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~v~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~ 228 (312)
.+++++|..|..|+++|+... .....+..|...|..++-.|+++ .+-++++||+|+-+|++......-.
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence 567889999999999998742 33455567888999999999994 5999999999999999863311100
Q ss_pred --------CChhhh--hhhhccCC-CCceeEEecCCceEEEEEe
Q 021453 229 --------DNAEKI--MKANKQGR-EDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 229 --------~~~~~~--~~~~~~~~-~~~~l~s~~~d~~i~i~~~ 261 (312)
...... .++...++ ...+|+.|+.|-..+++|.
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 000111 12222334 5667888888888888873
No 234
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=4.6e-12 Score=109.03 Aligned_cols=205 Identities=16% Similarity=0.240 Sum_probs=145.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s 105 (312)
.||...|+.+-|+|+.+..+++++.|..+..||+++-. .|+-.+ ..-......++|+-. +..+|+
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--------~p~ys~------~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--------RPFYST------SSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCC--------cceeee------ecccccCceeeecccCcchhhh
Confidence 36899999999999999999999999999999999754 222221 222334567889864 467888
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe--eE
Q 021453 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--LV 183 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~ 183 (312)
+..+.|++||++.+. .++..+++|... |..+.|.......+++++.||+|++||..... ..
T Consensus 177 shg~~i~vwd~r~gs---------------~pl~s~K~~vs~--vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGS---------------TPLCSLKGHVSS--VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred ccCCceEEEeccCCC---------------cceEEeccccee--eehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence 888999999998863 567778887765 88888844455678899999999999976432 22
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEe--CCCcEEE---------ccCCCC--CCCCCCCChhhhhhhhccCCC-------
Q 021453 184 RLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKL---------WAPMPT--DFPPLPDNAEKIMKANKQGRE------- 243 (312)
Q Consensus 184 ~~~~~~~~~v~~v~~~p~~~~l~t~~--~d~~i~i---------wd~~~~--~~~~~~~~~~~~~~~~~~~~~------- 243 (312)
... ....+|..-.+.|-|.-.++-- .+..+-+ |+..+. .+.++.+|...++...|....
T Consensus 240 ~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 240 RTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred eec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence 222 2345666667777665322211 1223333 443333 257788999999988887652
Q ss_pred --CceeEEecCCceEEEEEecc
Q 021453 244 --DHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 244 --~~~l~s~~~d~~i~i~~~~~ 263 (312)
.-.|++.+.|..+++|.+..
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccceeEEEeecCCceEeeeccH
Confidence 34799999999999998754
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=5.8e-11 Score=99.77 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=137.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE------cc-------------CCC-e
Q 021453 43 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY------SN-------------TSE-L 102 (312)
Q Consensus 43 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~-------------~~~-~ 102 (312)
..++|....||.+++|+....++.......... .+..++.+| +| .+. .
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~------------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL------------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhc------------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceE
Confidence 378999999999999999988765332211111 122223332 11 122 4
Q ss_pred EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021453 103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 181 (312)
++-| ..|.|.+|++..+ +....+.+......|.++.+ +..-..|.+++.|+.+..|+...++
T Consensus 73 lvlgt~~g~v~~ys~~~g----------------~it~~~st~~h~~~v~~~~~-~~~~~ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGG----------------EITAKLSTDKHYGNVNEILD-AQRLGCIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred EEeecCCccEEEEEecCC----------------eEEEEEecCCCCCcceeeec-ccccCceEecCCceeEEEEecccce
Confidence 5556 5899999999887 67777774444455999988 7888899999999999999999999
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCC----CCceeE-EecCCce
Q 021453 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR----EDHSRI-TLTPDVI 255 (312)
Q Consensus 182 ~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~l~-s~~~d~~ 255 (312)
.++.++.....+.+++.+|++..+++++ ++|++||+++.++ .++++|...+-....... .+.+++ +...+..
T Consensus 136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 9999999889999999999999999998 8999999999985 778888877743332211 133333 4445566
Q ss_pred EEEEEecc
Q 021453 256 MHVLRLQR 263 (312)
Q Consensus 256 i~i~~~~~ 263 (312)
+.+|-+..
T Consensus 214 i~~w~v~~ 221 (541)
T KOG4547|consen 214 ITVWVVEK 221 (541)
T ss_pred eeEEEEEc
Confidence 67776554
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.37 E-value=2.7e-10 Score=89.53 Aligned_cols=151 Identities=15% Similarity=0.257 Sum_probs=100.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-CC
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DE 109 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-d~ 109 (312)
.|.-+.|..+...+|.....++.|.+|++...+.... + .....++.++.|+|+|+ +|.+++ +-
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck--------------I-deg~agls~~~WSPdgrhiL~tseF~l 114 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK--------------I-DEGQAGLSSISWSPDGRHILLTSEFDL 114 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEE--------------e-ccCCCcceeeeECCCcceEeeeeccee
Confidence 4667889887756667778899999999987663222 1 34467789999999996 555565 89
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---------------------
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD--------------------- 168 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~--------------------- 168 (312)
.|.+|.+.+. ....++-.+.. +..++| +++|++.+.++.
T Consensus 115 riTVWSL~t~-----------------~~~~~~~pK~~--~kg~~f-~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 115 RITVWSLNTQ-----------------KGYLLPHPKTN--VKGYAF-HPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred EEEEEEeccc-----------------eeEEecccccC--ceeEEE-CCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 9999999875 22222222222 566676 677776665543
Q ss_pred ---------------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021453 169 ---------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 169 ---------------dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd 218 (312)
+..+.+||.--.-.+..+. -.-.+..++|+|.+++++.|+.|+.+|+-+
T Consensus 175 ~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhc
Confidence 1123344422111111221 224678899999999999999999999854
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=2.8e-11 Score=107.76 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=121.2
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEc
Q 021453 38 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEK 116 (312)
Q Consensus 38 ~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~ 116 (312)
++++. -++++|+.-+.|.+|+....+ ....+.+|.+.|.++.|+.+|.++++. .|..+++|++
T Consensus 141 ~s~~~-~~i~~gsv~~~iivW~~~~dn---------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i 204 (967)
T KOG0974|consen 141 DSAEE-LYIASGSVFGEIIVWKPHEDN---------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPI 204 (967)
T ss_pred ccCcE-EEEEeccccccEEEEeccccC---------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeec
Confidence 45555 788999999999999998332 222348999999999999999999996 5999999999
Q ss_pred CCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc-cceE
Q 021453 117 NMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVN 194 (312)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~ 194 (312)
.+. +... ..-+|... +..++| .|+ .+++++.|-+.++|+.+ ++.+..+.+|. ..+.
T Consensus 205 ~s~----------------~~~~~~~fgHsaR--vw~~~~-~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw 262 (967)
T KOG0974|consen 205 DSR----------------EVLGCTGFGHSAR--VWACCF-LPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIW 262 (967)
T ss_pred ccc----------------cccCcccccccce--eEEEEe-ccc--eeEEeccceEEEEEecc-cceehhhhhhhhccee
Confidence 987 3333 55578866 999998 666 99999999999999776 55566787776 5789
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 195 QLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 195 ~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
.++.++.....+|++.|+.+++|++.+.
T Consensus 263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 263 KIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999999999999999999997653
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.3e-11 Score=101.93 Aligned_cols=167 Identities=16% Similarity=0.219 Sum_probs=123.2
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
.++++++..++-+ .+|++|+.+|.|..||.+....+..+.....+... ........|+++.|+.+|..++.| ++
T Consensus 175 ~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~----pg~~~~~svTal~F~d~gL~~aVGts~ 249 (703)
T KOG2321|consen 175 SGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH----PGGDAAPSVTALKFRDDGLHVAVGTST 249 (703)
T ss_pred cccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCC----ccccccCcceEEEecCCceeEEeeccC
Confidence 5789999999988 69999999999999999987654333222211110 001123459999999999888887 69
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
|.+.|||++.. ++ .....|....+|..+.|...+++--+.......++|||-.+|+....+.
T Consensus 250 G~v~iyDLRa~----------------~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE- 311 (703)
T KOG2321|consen 250 GSVLIYDLRAS----------------KP-LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE- 311 (703)
T ss_pred CcEEEEEcccC----------------Cc-eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-
Confidence 99999999986 33 3445566666799999943333334444567789999999999988776
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021453 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 189 ~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
....++.+++-|++.+++++..+..+..|=+
T Consensus 312 pt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 312 PTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 4456999999999999999988877766543
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=9.7e-11 Score=101.24 Aligned_cols=153 Identities=10% Similarity=0.065 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEcc--CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN- 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~- 107 (312)
.+.+.+|+|++..++++.+.++...||.+. ++. ...+ ..+........|+|+|+.|+. +.
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~ 304 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---------------LRRL-TQSSGIDTEPFFSPDGRSIYFTSDR 304 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC---------------cEEC-CCCCCCCcCeEEcCCCCEEEEEecC
Confidence 456889999995444567788887777654 332 1111 223344566789999996665 43
Q ss_pred CCcEEEEEc--CCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCCee
Q 021453 108 DELVYLFEK--NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKL 182 (312)
Q Consensus 108 d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~ 182 (312)
++...+|.+ .++ ..+.+..... .....+| +|+|++|+..+.++ .|.+||+.+++.
T Consensus 305 ~g~~~Iy~~~~~~g-----------------~~~~lt~~g~--~~~~~~~-SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 305 GGAPQIYRMPASGG-----------------AAQRVTFTGS--YNTSPRI-SPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CCCcEEEEEECCCC-----------------ceEEEecCCC--CcCceEE-CCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 455566654 333 2222222221 1345778 99999998766554 699999988765
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCC
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPT 222 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~---~i~iwd~~~~ 222 (312)
.. +..+ .......|+|+++.|+.++.++ .+.+.++.+.
T Consensus 365 ~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 365 TA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred EE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 43 3322 3346789999999977776443 3555555443
No 240
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.33 E-value=1.3e-10 Score=91.64 Aligned_cols=207 Identities=16% Similarity=0.157 Sum_probs=148.3
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 104 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 104 (312)
+-||.+.|++...-|.. .-+.+.+.|.++|+|--+ .++ .-..+......+++++.++++...|+
T Consensus 20 ~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q--------------~wpsI~~~mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQ--------------YWPSIYHYMPSPCSAMEYVSESRRLY 84 (404)
T ss_pred hcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccc--------------cCchhhhhCCCCceEeeeeccceEEE
Confidence 35788899999888877 689999999999999644 444 11112133467789999999998888
Q ss_pred Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc-----
Q 021453 105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK----- 178 (312)
Q Consensus 105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~----- 178 (312)
.+ ..|++.-+.+... +.+....+.+..|... +..+-| +....++++.+.|..+.---.+
T Consensus 85 vg~~ngtvtefs~sed------------fnkm~~~r~~~~h~~~--v~~~if-~~~~e~V~s~~~dk~~~~hc~e~~~~l 149 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSED------------FNKMTFLKDYLAHQAR--VSAIVF-SLTHEWVLSTGKDKQFAWHCTESGNRL 149 (404)
T ss_pred EEEecceEEEEEhhhh------------hhhcchhhhhhhhhcc--eeeEEe-cCCceeEEEeccccceEEEeeccCCcc
Confidence 87 5899988876432 3333455666666655 777776 6666667666666554222111
Q ss_pred ------------------------------------CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 179 ------------------------------------GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 179 ------------------------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
...++..+.+|.+.+++++|.|....+.+|..|..+.+||+...
T Consensus 150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 11235577789999999999999999999999999999998766
Q ss_pred C--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 223 D--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 223 ~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+ ...+.+|.+.+ ...+...-...+++.+.|+.|.+|+++.
T Consensus 230 ~g~~~el~gh~~kV-~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 230 KGTAYELQGHNDKV-QALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cceeeeeccchhhh-hhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 5 35556666665 3333344456899999999999999764
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.7e-10 Score=96.89 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=105.8
Q ss_pred ccceEEEEEcCCCCcEEEEEe-CCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021453 30 SIRLNAIVIDPRNPNYFAVGG-SDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 105 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 105 (312)
...+.+..|+|+| +.|+..+ .++ .|.+||+.+++... + ..........+|+|+|+.|+.
T Consensus 217 ~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~~-------l---------t~~~g~~~~~~wSPDG~~La~~ 279 (448)
T PRK04792 217 PEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVREK-------V---------TSFPGINGAPRFSPDGKKLALV 279 (448)
T ss_pred CCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-------e---------cCCCCCcCCeeECCCCCEEEEE
Confidence 4567889999999 5555543 333 58888888765210 0 111122346799999996654
Q ss_pred e-cCCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccC
Q 021453 106 Y-NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKG 179 (312)
Q Consensus 106 ~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~ 179 (312)
. .++. |+++|+.++ ..+.+..+... ....+| +|++++|+..+. ++ .|+++|+.+
T Consensus 280 ~~~~g~~~Iy~~dl~tg-----------------~~~~lt~~~~~--~~~p~w-SpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 280 LSKDGQPEIYVVDIATK-----------------ALTRITRHRAI--DTEPSW-HPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred EeCCCCeEEEEEECCCC-----------------CeEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECCC
Confidence 3 3554 788888765 22333333322 567888 999998876543 33 577778877
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeC-CC--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE
Q 021453 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
++... +..........+|+|+|++++..+. ++ .|.++|+.++....+..... . ....+++++..++.
T Consensus 340 g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~-d-~~ps~spdG~~I~~ 409 (448)
T PRK04792 340 GKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL-D-ESPSVAPNGTMVIY 409 (448)
T ss_pred CCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC-C-CCceECCCCCEEEE
Confidence 76533 2212223345789999999776654 34 45557777776433332211 1 11135666655543
No 242
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.9e-11 Score=100.37 Aligned_cols=248 Identities=12% Similarity=0.088 Sum_probs=166.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLI 104 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~ 104 (312)
.+|.+-|..+.|+..| ..+++|+.|..|.+||...++ ....+..+|...|....|-|.. +-++
T Consensus 139 ~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~--------------~~l~f~SGH~~NvfQaKFiP~s~d~ti~ 203 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGS--------------PKLSFESGHCNNVFQAKFIPFSGDRTIV 203 (559)
T ss_pred cCCCCccceeeecccC-ceeeccCccceEEeehhhccC--------------cccccccccccchhhhhccCCCCCcCce
Confidence 4699999999999999 899999999999999999887 3444457888888888898865 3566
Q ss_pred Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCee
Q 021453 105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
++ .||++++=.+.... ..+..+.+..|.+. |.-++. .|. ...|++++.|+.++-+|++...+
T Consensus 204 ~~s~dgqvr~s~i~~t~-------------~~e~t~rl~~h~g~--vhklav-~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 204 TSSRDGQVRVSEILETG-------------YVENTKRLAPHEGP--VHKLAV-EPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred eccccCceeeeeecccc-------------ceecceecccccCc--cceeee-cCCCCCcccccccccceeeeeeccCCc
Confidence 64 69999987664321 01223445556655 777776 454 56689999999999999987765
Q ss_pred EEEe---ecCcc---ceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCCC-------C-----CCCChhhhhhhhccCCC
Q 021453 183 VRLM---VGDRH---VVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFP-------P-----LPDNAEKIMKANKQGRE 243 (312)
Q Consensus 183 ~~~~---~~~~~---~v~~v~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~-------~-----~~~~~~~~~~~~~~~~~ 243 (312)
...+ +.+.. ..+.++..|... .+++++.|..+++||.+.-... . +.......++.+.++.+
T Consensus 268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD 347 (559)
T ss_pred cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence 4333 23333 467889999887 5999999999999997643211 1 11111222344445544
Q ss_pred CceeEEecCCceEEEEEeccc--------------Ccccee------------EeecCCCccCCCCCCCeEEEeecCCCC
Q 021453 244 DHSRITLTPDVIMHVLRLQRR--------------QTLAYR------------ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 244 ~~~l~s~~~d~~i~i~~~~~~--------------~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
+.-|++.-.|-.|++++-..+ .+.+|. =+.|...++.++.|.|.||+|+=..+.
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 444444444555666642111 011121 245667788899999999999977765
Q ss_pred CCCCCCCc
Q 021453 298 ASSEGGGN 305 (312)
Q Consensus 298 ~~~~~~~~ 305 (312)
.-..+.|+
T Consensus 428 ii~~MegD 435 (559)
T KOG1334|consen 428 IIRFMEGD 435 (559)
T ss_pred HHHHhhcc
Confidence 44444443
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.31 E-value=1.9e-10 Score=88.88 Aligned_cols=167 Identities=10% Similarity=0.069 Sum_probs=113.0
Q ss_pred ccceEEEEEcC---CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 30 SIRLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 30 ~~~v~~~~~~p---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
...+..|.|.- ++.-.++-+..+|.|.+|......-.. ..+.+....+ ......++.|++.+..++++
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~------~L~~ls~~ki---~~~~~lslD~~~~~~~i~vs 139 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV------HLRGLSSKKI---SVVEALSLDISTSGTKIFVS 139 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeee------eecccchhhh---hheeeeEEEeeccCceEEEE
Confidence 34567777753 332366777788999998876443110 0000011111 11135678899999877776
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc-CCeeEE
Q 021453 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVR 184 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~ 184 (312)
++|.+.+-+.... ..+..+..+.|.-+ .....|...+.+.+++|++|+.+..||++ .++.+.
T Consensus 140 ~s~G~~~~v~~t~~--------------~le~vq~wk~He~E--~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 140 DSRGSISGVYETEM--------------VLEKVQTWKVHEFE--AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred cCCCcEEEEeccee--------------eeeeccccccccee--eeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 6888885554432 11344567788766 77777855567899999999999999999 454444
Q ss_pred E-eecCccceEEEEEcCC-CCeEEEEeCCCcEEEccCCC
Q 021453 185 L-MVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 185 ~-~~~~~~~v~~v~~~p~-~~~l~t~~~d~~i~iwd~~~ 221 (312)
. .+.|...|.++.-+|. +.+++||+.|..|++||.+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 3 4568889999988865 56799999999999999984
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=5.3e-10 Score=96.37 Aligned_cols=201 Identities=10% Similarity=0.006 Sum_probs=113.5
Q ss_pred cceEEEEEcCCCCc--EEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 31 IRLNAIVIDPRNPN--YFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~--~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
..+..-+|+|+|.. ++++...+| .|.+.++.+++.. .+ ..........+|+|||+.|+..
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-------~l---------t~~~g~~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-------KI---------LALQGNQLMPTFSPRKKLLAFI 248 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-------Ee---------ecCCCCccceEECCCCCEEEEE
Confidence 44567799999843 223444444 5777787766411 11 1123334567999999877654
Q ss_pred c--CC--cE--EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEE--ec
Q 021453 107 N--DE--LV--YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIW--KK 177 (312)
Q Consensus 107 ~--d~--~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iw--d~ 177 (312)
. +| .+ .+|++..+.. ....+........ ....+| +|+|+.|+..+ .+|...+| ++
T Consensus 249 s~~~g~~di~~~~~~~~~g~~-------------g~~~~lt~~~~~~--~~~p~w-SPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 249 SDRYGNPDLFIQSFSLETGAI-------------GKPRRLLNEAFGT--QGNPSF-SPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ECCCCCcceeEEEeecccCCC-------------CcceEeecCCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEEC
Confidence 2 33 33 3466654200 0222222222221 456788 99999877654 45644444 44
Q ss_pred cC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE-ecC
Q 021453 178 KG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT-LTP 252 (312)
Q Consensus 178 ~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~ 252 (312)
.. +.....+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++...+...... .....|+++++.++. ...
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~-~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPEN-KESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCC-ccceEECCCCCEEEEEECC
Confidence 32 23334444444566789999999998776543 4699999998876555432212 233346777766553 332
Q ss_pred C--ceEEEEEeccc
Q 021453 253 D--VIMHVLRLQRR 264 (312)
Q Consensus 253 d--~~i~i~~~~~~ 264 (312)
+ ..+.++++...
T Consensus 392 ~g~~~L~~vdl~~g 405 (428)
T PRK01029 392 SNESELYLISLITK 405 (428)
T ss_pred CCCceEEEEECCCC
Confidence 2 45666665543
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=5.4e-11 Score=93.83 Aligned_cols=227 Identities=15% Similarity=0.156 Sum_probs=146.0
Q ss_pred ccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecC---------------------CCCCCCCcccccccccccCC
Q 021453 30 SIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYS---------------------PISSDTPVDTFCPRHLIGKN 87 (312)
Q Consensus 30 ~~~v~~~~~~p~~~-~~l~~~~~d~~i~iwd~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 87 (312)
...|..+.|.+++. ..++..+.|.+|++|.+....... ..+.+..+...+.+.....|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 45788999988653 467778899999999987543221 00111122223334445679
Q ss_pred CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021453 88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 167 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~ 167 (312)
...|.+|.++.|++.+.++.|=.|.+|+++-. ++++.+-++++- .+..-. ..|++..|++...+.++-.+
T Consensus 164 tyhiNSIS~NsD~Et~lSADdLRINLWnlei~----d~sFnIVDIKP~----nmEeLt--eVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSADDLRINLWNLEII----DQSFNIVDIKPA----NMEELT--EVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeEeeeeeecCccceEeeccceeeeecccccc----CCceeEEEcccc----CHHHHH--HHHhhhccCHhHccEEEEec
Confidence 99999999999999999999999999998643 111111111110 011111 23788888433567788889
Q ss_pred cCceEEEEeccCCeeEE----Eee------------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCC
Q 021453 168 DCGHLFIWKKKGGKLVR----LMV------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPD 229 (312)
Q Consensus 168 ~dg~v~iwd~~~~~~~~----~~~------------~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~ 229 (312)
..|+|++.|++...+.- .+. .--..|.++.|+++|+++++-+. -+|++||+.... +.+++-
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence 99999999998543211 111 11236889999999999998753 689999985432 333332
Q ss_pred Ch--h----h------hhhh--hccCCCCceeEEecCCceEEEEEecccCcc
Q 021453 230 NA--E----K------IMKA--NKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 230 ~~--~----~------~~~~--~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
|. . . ++.. ..|+.++...+||+....++++++.++.+.
T Consensus 313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 313 HEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred hHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 21 1 1 1110 123446679999999999999997666544
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=8.3e-10 Score=92.99 Aligned_cols=144 Identities=10% Similarity=0.149 Sum_probs=117.8
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 122 (312)
..++-|...|.|.+|+...+++- ....-..|.+.|.++.++.+-..|.++ .|..+..|+....
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it-------------~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--- 134 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEIT-------------AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--- 134 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEE-------------EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---
Confidence 47888999999999999988731 112226789999999998887778775 6999999999876
Q ss_pred CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCC-
Q 021453 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH- 201 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~- 201 (312)
...+.+...... +.+++. +|++..+++++ +.|++||+.+++.+..|.+|.++|++++|--.
T Consensus 135 -------------~~~~~~~~~~~~--~~sl~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 135 -------------VIIRIWKEQKPL--VSSLCI-SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred -------------eeeeeeccCCCc--cceEEE-cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence 666777766644 899998 99999999887 78999999999999999999999999999776
Q ss_pred ----CCeEE-EEeCCCcEEEccCCC
Q 021453 202 ----IPMFA-TCGIEKTVKLWAPMP 221 (312)
Q Consensus 202 ----~~~l~-t~~~d~~i~iwd~~~ 221 (312)
|.+++ +...+..|.+|-...
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccccceeeeccccccceeEEEEEc
Confidence 66654 445677888887654
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=4.5e-10 Score=96.82 Aligned_cols=220 Identities=10% Similarity=0.110 Sum_probs=149.8
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
...+.|++|+... .++|.|+.||.+++..+.+.........-.....+...+.+.+|...|..+.|+.+.+.|.++ .+
T Consensus 14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4568899999977 799999999999999988654322222222333444455568999999999999999999998 59
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE-EEee
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-RLMV 187 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~ 187 (312)
|.|.+|-+-++ .-...+...++...|.+++| +.+|..+.....||.|.+=.+...+.- +.++
T Consensus 93 GlIiVWmlykg----------------sW~EEMiNnRnKSvV~SmsW-n~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk 155 (1189)
T KOG2041|consen 93 GLIIVWMLYKG----------------SWCEEMINNRNKSVVVSMSW-NLDGTKICIVYEDGAVIVGSVDGNRIWGKELK 155 (1189)
T ss_pred ceEEEEeeecc----------------cHHHHHhhCcCccEEEEEEE-cCCCcEEEEEEccCCEEEEeeccceecchhcc
Confidence 99999998766 33333444444456999999 999999999999999988877643221 1222
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC--------CCCC----CChhhhhhhhc-------cCCCCceeE
Q 021453 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--------PPLP----DNAEKIMKANK-------QGREDHSRI 248 (312)
Q Consensus 188 ~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~--------~~~~----~~~~~~~~~~~-------~~~~~~~l~ 248 (312)
+ .....+.|+++.+.++.+-..|.+.++|.++.-. .... .....+....| ..|+...++
T Consensus 156 g--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la 233 (1189)
T KOG2041|consen 156 G--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA 233 (1189)
T ss_pred h--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence 2 2345789999999988888889999999765311 0000 01111111111 233556677
Q ss_pred EecCCceEEEEEecccCccce
Q 021453 249 TLTPDVIMHVLRLQRRQTLAY 269 (312)
Q Consensus 249 s~~~d~~i~i~~~~~~~~~~~ 269 (312)
.+-.+|.+.+.+-.+...++.
T Consensus 234 vcy~nGr~QiMR~eND~~Pvv 254 (1189)
T KOG2041|consen 234 VCYANGRMQIMRSENDPEPVV 254 (1189)
T ss_pred EEEcCceehhhhhcCCCCCeE
Confidence 777778877776544444433
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=1.6e-09 Score=93.96 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=99.0
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
...+.+++|+|++..++++.+.++ .|++|++.+++.. .+ ..+........|+|+|+.|+. +
T Consensus 233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---------------~l-~~~~~~~~~~~~s~dg~~l~~~s 296 (417)
T TIGR02800 233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---------------RL-TNGPGIDTEPSWSPDGKSIAFTS 296 (417)
T ss_pred CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE---------------EC-CCCCCCCCCEEECCCCCEEEEEE
Confidence 345667899999954555555554 5888888776421 11 122233446689999986655 3
Q ss_pred c-CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCC
Q 021453 107 N-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGG 180 (312)
Q Consensus 107 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~ 180 (312)
. .+ .|+++++.++ + ...+..+... .....| +|++++++.++.++ .|.+||+.++
T Consensus 297 ~~~g~~~iy~~d~~~~----------------~-~~~l~~~~~~--~~~~~~-spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 297 DRGGSPQIYMMDADGG----------------E-VRRLTFRGGY--NASPSW-SPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCCCceEEEEECCCC----------------C-EEEeecCCCC--ccCeEE-CCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 3 33 5888887664 2 2333333322 667788 99999998887765 7999999876
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCC
Q 021453 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTD 223 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~---~i~iwd~~~~~ 223 (312)
.. ..+... .......|+|+++.|+..+.++ .+.+.+.....
T Consensus 357 ~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 357 GE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred Ce-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 54 333322 2334568999999987776543 45666655443
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=2.6e-09 Score=92.11 Aligned_cols=165 Identities=8% Similarity=0.072 Sum_probs=96.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC----eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
.....+|+|+|..++++...+| .+.+|++..+.. . ....+...+.......+|+|+|+.|+. +
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~------g------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s 299 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI------G------KPRRLLNEAFGTQGNPSFSPDGTRLVFVS 299 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC------C------cceEeecCCCCCcCCeEECCCCCEEEEEE
Confidence 3456899999954444443333 344466654310 0 011111222233456799999996665 3
Q ss_pred -cCCcEEEE--EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---ceEEEEeccCC
Q 021453 107 -NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGG 180 (312)
Q Consensus 107 -~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g~v~iwd~~~~ 180 (312)
.++...+| ++.... ...+.+...... +....| +|+|++|+..+.+ ..|++||+.++
T Consensus 300 ~~~g~~~ly~~~~~~~g---------------~~~~~lt~~~~~--~~~p~w-SPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 300 NKDGRPRIYIMQIDPEG---------------QSPRLLTKKYRN--SSCPAW-SPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred CCCCCceEEEEECcccc---------------cceEEeccCCCC--ccceeE-CCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 35654444 443210 122333333322 667888 9999988866543 47999999888
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCCCCC
Q 021453 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPL 227 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~ 227 (312)
+.. .+......+....|+|+|+.|+.... ...|.++++.+++...+
T Consensus 362 ~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 362 RDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred CeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 764 33333345678999999998765432 35688889887765433
No 250
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.18 E-value=7.1e-09 Score=87.33 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--cCCcE
Q 021453 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELV 111 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i 111 (312)
..+.|+|++ +++++.+.||.|.++|+.+.+++. .+.. ......++++++|++++++ ..+.+
T Consensus 40 ~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~--------------~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 40 AGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA--------------TIKV--GGNPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp EEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE--------------EEE---SSEEEEEEE--TTTEEEEEEEETTEE
T ss_pred eEEEecCCC-CEEEEEcCCCeEEEEECCcccEEE--------------EEec--CCCcceEEEcCCCCEEEEEecCCCce
Confidence 457899999 788888899999999999988432 2212 3446789999999988775 49999
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEecccC-----CceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeEE-
Q 021453 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR- 184 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~- 184 (312)
.++|.++. +.++.+..... ...+..+.. ++... ++++--+.+.|.+.|....+.+.
T Consensus 103 ~v~D~~tl----------------e~v~~I~~~~~~~~~~~~Rv~aIv~-s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 103 SVIDAETL----------------EPVKTIPTGGMPVDGPESRVAAIVA-SPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp EEEETTT------------------EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred eEeccccc----------------cceeecccccccccccCCCceeEEe-cCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 99999886 66666653321 112667766 66666 55566667899999977654432
Q ss_pred EeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCC
Q 021453 185 LMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTD 223 (312)
Q Consensus 185 ~~~~~~~~v~~v~~~p~~~~l~t~-~~d~~i~iwd~~~~~ 223 (312)
....-.....+..|+|++++++.+ .....|-++|..+++
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 222233466789999999996554 467789999988764
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=5.1e-09 Score=91.00 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcEEEEEeCCCe--EEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-C
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D 108 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d 108 (312)
....+|+|++..++++.+.++. |+++|+.+++.. .+ ..+.......+|+|+|+.|+. +. +
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~---------------~l-t~~~~~~~~p~wSpDG~~I~f~s~~~ 327 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT---------------RI-TRHRAIDTEPSWHPDGKSLIFTSERG 327 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE---------------EC-ccCCCCccceEECCCCCEEEEEECCC
Confidence 3468999999545556666775 777787766521 11 223334567899999986655 32 3
Q ss_pred C--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccCCeeE
Q 021453 109 E--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGKLV 183 (312)
Q Consensus 109 ~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~~~ 183 (312)
+ .|+++|+.++ +. ..+...... ....+| +|+|++|+..+. ++ .|.++|+.+++..
T Consensus 328 g~~~Iy~~dl~~g----------------~~-~~Lt~~g~~--~~~~~~-SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 328 GKPQIYRVNLASG----------------KV-SRLTFEGEQ--NLGGSI-TPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred CCceEEEEECCCC----------------CE-EEEecCCCC--CcCeeE-CCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 3 5777777665 22 222212111 345678 999999877654 33 4666788877643
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeC-CC--cEEEccCCCCCCCCCC
Q 021453 184 RLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLP 228 (312)
Q Consensus 184 ~~~~~~~~~v~~v~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~ 228 (312)
.+... .......|+|+|+.++..+. ++ .+.+++..+.....+.
T Consensus 388 -~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 388 -VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred -EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 33322 12234579999998766553 33 3777777655444443
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=6e-09 Score=87.45 Aligned_cols=151 Identities=11% Similarity=0.136 Sum_probs=106.8
Q ss_pred EEEEEcCCCCcEEEEEeC--C---------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021453 34 NAIVIDPRNPNYFAVGGS--D---------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 102 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~--d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 102 (312)
-.+.|++.+..+|+.++. | .++++.++.... +... ....++|.++.|+|+++-
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--------------~~V~--L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--------------VSVP--LLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--------------EEEe--cCCCCCceEEEECCCCCE
Confidence 358888877555554432 2 357777776332 1111 223689999999999985
Q ss_pred EEE--e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---CceEEEEe
Q 021453 103 LIS--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWK 176 (312)
Q Consensus 103 l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---dg~v~iwd 176 (312)
++. | .-..+.|||++.. ++..+. .++ -.++-| +|.|++|+.++. -|.|-|||
T Consensus 285 F~VvyGfMPAkvtifnlr~~-----------------~v~df~--egp--RN~~~f-np~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRGK-----------------PVFDFP--EGP--RNTAFF-NPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred EEEEEecccceEEEEcCCCC-----------------EeEeCC--CCC--ccceEE-CCCCCEEEEeecCCCCCceEEEe
Confidence 444 3 4889999999753 443332 222 456666 999999988765 67899999
Q ss_pred ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEccCCCCCC
Q 021453 177 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF 224 (312)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~------d~~i~iwd~~~~~~ 224 (312)
..+.+++..+..-. -+-+.|+|+|.+|+|+.. |..++||+..+..+
T Consensus 343 v~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 343 VPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred ccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 99988888877543 355889999999988873 68899999887654
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=3.7e-10 Score=94.73 Aligned_cols=205 Identities=10% Similarity=0.102 Sum_probs=141.4
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+-||...|..++--.+. +-+++++.|.+|++|.++... ++.-..-|.... ..|..+|.++.|-.+.+++++
T Consensus 731 f~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~Eg-------D~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEG-------DEIGTSACQFTY-QAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred ccCcHHHhHHHHhcccc-cceeeccCCceEEEEEecccc-------CccccceeeeEh-hhccCcccceeeeeccceeee
Confidence 35799999988766655 789999999999999997432 111112233333 789999999999888776665
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe---cccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCe
Q 021453 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGK 181 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~ 181 (312)
+ |+.|.+||.--+ .++..+. .+.....|.++- +-+...+.+| +...+|+++|.+.++
T Consensus 802 c-D~giHlWDPFig----------------r~Laq~~dapk~~a~~~ikcl~--nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 802 C-DGGIHLWDPFIG----------------RLLAQMEDAPKEGAGGNIKCLE--NVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred c-cCcceeeccccc----------------chhHhhhcCcccCCCceeEecc--cCcchheeeeccchhhheeeeccccc
Confidence 4 788999998655 3333222 122222355543 3345555544 789999999999988
Q ss_pred eEEEeec-----CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCce
Q 021453 182 LVRLMVG-----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVI 255 (312)
Q Consensus 182 ~~~~~~~-----~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 255 (312)
....++. ..+.+.+++..|.|+.++.+-..|.|.+.|.++++ +..........+..+ .+.+..++....|..
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla--apsdq~L~~saldHs 940 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA--APSDQALAQSALDHS 940 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc--CchhHHHHhhcccce
Confidence 7777653 34568899999999999999999999999999998 455554444454443 234455666666666
Q ss_pred EEE-EE
Q 021453 256 MHV-LR 260 (312)
Q Consensus 256 i~i-~~ 260 (312)
+.+ |-
T Consensus 941 laVnWh 946 (1034)
T KOG4190|consen 941 LAVNWH 946 (1034)
T ss_pred eEeeeh
Confidence 666 63
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=7.4e-09 Score=90.01 Aligned_cols=155 Identities=12% Similarity=0.041 Sum_probs=94.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN- 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~- 107 (312)
.+...+|+|+|..++++...+| .|++||+.+++.. .+ ..+........|+|+|+.++. +.
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------------~l-t~~~~~~~~~~~spDg~~i~f~s~~ 307 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS---------------RV-TNHPAIDTEPFWGKDGRTLYFTSDR 307 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE---------------Ec-ccCCCCcCCeEECCCCCEEEEEECC
Confidence 3457899999944444555555 5888898876521 11 223334556789999986554 32
Q ss_pred CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-c--eEEEEeccCCee
Q 021453 108 DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGGKL 182 (312)
Q Consensus 108 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-g--~v~iwd~~~~~~ 182 (312)
++ .|+++++.++ +. +.+..... ......| +|++++|+..+.+ + .|.++|+.+++.
T Consensus 308 ~g~~~iy~~d~~~g----------------~~-~~lt~~~~--~~~~~~~-Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 308 GGKPQIYKVNVNGG----------------RA-ERVTFVGN--YNARPRL-SADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCCceEEEEECCCC----------------CE-EEeecCCC--CccceEE-CCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 33 5777787665 22 22221111 1345677 9999998776543 3 588899988764
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCC
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDF 224 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d---~~i~iwd~~~~~~ 224 (312)
. .+. +........|+|+|+.++..+.+ ..|.++++.+...
T Consensus 368 ~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 368 R-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred E-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 3 332 22223356899999997766543 3466777765443
No 255
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.12 E-value=1.5e-09 Score=87.45 Aligned_cols=159 Identities=14% Similarity=0.262 Sum_probs=107.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec---
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN--- 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~--- 107 (312)
.+..+..+|.+ +++|.+..+....++++..... ....+..++. ....+++.|-.+.. .+++-.
T Consensus 64 a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~-----~~kl~~~~~v-------~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSG-RLVAVATSSKQRAVFDYRENPK-----GAKLLDVSCV-------PKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCc-eEEEEEeCCCceEEEEEecCCC-----cceeeeEeec-------ccCcceeeeeeccceEEEEeecCC
Confidence 34456667777 8999998888887888765431 0111111121 12233444444443 333322
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe-
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM- 186 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~- 186 (312)
...+.+|....+ ....+-||... ++.|++ +|++++++++..|..|++-.......+..+
T Consensus 131 ~~~~di~s~~~~-----------------~~~~~lGhvSm--l~dVav-S~D~~~IitaDRDEkIRvs~ypa~f~Iesfc 190 (390)
T KOG3914|consen 131 VYSFDILSADSG-----------------RCEPILGHVSM--LLDVAV-SPDDQFIITADRDEKIRVSRYPATFVIESFC 190 (390)
T ss_pred ceeeeeeccccc-----------------Ccchhhhhhhh--hheeee-cCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence 344555554433 44556688866 999999 999999999999999999887765555555
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
-||+.-|..++.-++. .|+++|.|++|++||+.+++.
T Consensus 191 lGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred cccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCc
Confidence 4799999999987764 489999999999999998763
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=2.1e-07 Score=74.55 Aligned_cols=208 Identities=14% Similarity=0.164 Sum_probs=127.0
Q ss_pred CccceEEEEEcCCCCcEEEEEeC---CCeEEEEEccC--CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
+...++-++|+|+. +.|.++.. +|.|.-|.+.. +++. +....... ..+.+.++++++|+++
T Consensus 38 ~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt-----------~ln~~~~~--g~~p~yvsvd~~g~~v 103 (346)
T COG2706 38 ELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLT-----------FLNRQTLP--GSPPCYVSVDEDGRFV 103 (346)
T ss_pred ccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEE-----------EeeccccC--CCCCeEEEECCCCCEE
Confidence 35567889999988 67777643 57888888774 4421 11111112 2333789999999988
Q ss_pred EEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC--------ceeeEEEEecCCCCEEEEecc-CceE
Q 021453 104 ISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--------QTVKGVNFFGPNDEYVMSGSD-CGHL 172 (312)
Q Consensus 104 ~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~v~~~s~~~~~l~~~~~-dg~v 172 (312)
+++ ..|.|.++-++..... . ...+.+. |... ..+....+ .|++++|++... --+|
T Consensus 104 f~AnY~~g~v~v~p~~~dG~l-~-----------~~v~~~~-h~g~~p~~rQ~~~h~H~a~~-tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 104 FVANYHSGSVSVYPLQADGSL-Q-----------PVVQVVK-HTGSGPHERQESPHVHSANF-TPDGRYLVVPDLGTDRI 169 (346)
T ss_pred EEEEccCceEEEEEcccCCcc-c-----------cceeeee-cCCCCCCccccCCccceeee-CCCCCEEEEeecCCceE
Confidence 876 4899999999653100 0 0111111 1110 11566777 999999988764 3478
Q ss_pred EEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC--CCCC------CCCCC--hhhhhhhh
Q 021453 173 FIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP--TDFP------PLPDN--AEKIMKAN 238 (312)
Q Consensus 173 ~iwd~~~~~~~~~~~---~~~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~~--~~~~------~~~~~--~~~~~~~~ 238 (312)
.+|++..|+....-. ........|+|||++++....+ .+++|-+|.... +++. +++.. ...-....
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 899998776532211 2234568899999999955444 789999998876 3322 22211 11111223
Q ss_pred ccCCCCceeEEecCC-ceEEEEEeccc
Q 021453 239 KQGREDHSRITLTPD-VIMHVLRLQRR 264 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d-~~i~i~~~~~~ 264 (312)
..++++++|.+.... ..|-++.+...
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 355678887765543 56777776654
No 257
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.11 E-value=2.3e-08 Score=91.33 Aligned_cols=197 Identities=13% Similarity=0.123 Sum_probs=117.8
Q ss_pred CeeecccCccce-eeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC-------CCC--
Q 021453 1 MWQFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-------PIS-- 70 (312)
Q Consensus 1 v~~wd~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~-------~~~-- 70 (312)
||+||++.-... ...++. ..|+.-..++.++...+.+ ..+|.++.||.|++.++....... ..+
T Consensus 1073 VKvW~~~k~~~~~~s~rS~-----ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1073 VKVWNLRKLEGEGGSARSE-----LTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred EEEeeehhhhcCcceeeee-----EEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence 689999864433 222221 1121236689999999988 899999999999999987521110 000
Q ss_pred CCCCccccc-------c----c-------c-------------cccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCC
Q 021453 71 SDTPVDTFC-------P----R-------H-------------LIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNM 118 (312)
Q Consensus 71 ~~~~~~~~~-------~----~-------~-------------~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 118 (312)
.+..+-.+. . . . ......+.|++++.+|.+..++.| +.|.+.+||++=
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 011110000 0 0 0 001124579999999999988887 699999999975
Q ss_pred CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---CCEEEEec--cCceEEEEeccCCeeEEEeecC-cc-
Q 021453 119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGS--DCGHLFIWKKKGGKLVRLMVGD-RH- 191 (312)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~-~~- 191 (312)
+ .++.... |....++..+.. .|- ....++++ ..+.|-+|++.+|.+-..+... ..
T Consensus 1227 ~----------------~~i~sw~-~P~~~~i~~v~~-~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1227 R----------------VPILSWE-HPARAPIRHVWL-CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAP 1288 (1431)
T ss_pred C----------------ceeeccc-CcccCCcceEEe-eccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCc
Confidence 4 2333322 222133666655 332 24554444 5788999999988766555432 10
Q ss_pred ------c-----------eEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 192 ------V-----------VNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 192 ------~-----------v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
+ .....+..-+..+++|+.|..||.||...
T Consensus 1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 1 11122333345788999999999999753
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.10 E-value=2.2e-08 Score=79.40 Aligned_cols=177 Identities=14% Similarity=0.221 Sum_probs=125.3
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
-+.+++++++++.. ..|+.|-.+|++.-+.+...-. ..........|...+..+-|+-..+.+++. .
T Consensus 67 mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfn-----------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~ 134 (404)
T KOG1409|consen 67 MPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFN-----------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK 134 (404)
T ss_pred CCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhh-----------hcchhhhhhhhhcceeeEEecCCceeEEEecc
Confidence 36789999999987 8999999999999888763210 001222225788888888888777766664 4
Q ss_pred CCcEEEEEcCCCcC-----------CCCC------------cCCc--ccccCCCCCceEecccCCceeeEEEEecCCCCE
Q 021453 108 DELVYLFEKNMGLG-----------PSPL------------SLSP--EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 162 (312)
Q Consensus 108 d~~i~iwd~~~~~~-----------~~~~------------~~~~--~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~ 162 (312)
|..+.---.+.+.+ +... .+.. -......++.++.+|... +.+++| .+....
T Consensus 135 dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~W-d~~~~~ 211 (404)
T KOG1409|consen 135 DKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKW-DPGQRL 211 (404)
T ss_pred ccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEE-cCCCcE
Confidence 65544333332220 0000 0000 002333556677888876 999999 999999
Q ss_pred EEEeccCceEEEEeccCCee-EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021453 163 VMSGSDCGHLFIWKKKGGKL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 163 l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
|++|..|..+.+||+--.+- ...+.+|...|..+...+.-+.+.+++.||.|.+|+..
T Consensus 212 LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999999999864432 34667899999999888888889999999999999975
No 259
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.09 E-value=1.1e-09 Score=84.68 Aligned_cols=164 Identities=13% Similarity=0.129 Sum_probs=112.4
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeE
Q 021453 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELL 103 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l 103 (312)
|.+|..++...+|+...++++.+|+.|+.+..||++. ++ ...+-...|...|.+|.-+|. +.++
T Consensus 161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--------------~i~~n~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--------------FIWHNSKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc--------------eeeecceeeecceEEEecCCCCCceE
Confidence 4568899999999998889999999999999999992 22 122212567888999988875 4589
Q ss_pred EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCe
Q 021453 104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~ 181 (312)
++|+ |..|++||.++.. +++. ++... +-|..+.+ +|.- ..++.++...-.+|-+...+.
T Consensus 227 ~TGsYDe~i~~~DtRnm~---------------kPl~--~~~v~-GGVWRi~~-~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMG---------------KPLF--KAKVG-GGVWRIKH-HPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred EEeccccceeeeehhccc---------------Cccc--cCccc-cceEEEEe-cchhhhHHHHHHHhcCceEEEecccc
Confidence 9986 9999999998642 2322 21111 23999998 6643 344445555556677665432
Q ss_pred -----eEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEE-EccCCCC
Q 021453 182 -----LVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVK-LWAPMPT 222 (312)
Q Consensus 182 -----~~~~~~~~~~~v~~v~~~p~~~~l~t~~-~d~~i~-iwd~~~~ 222 (312)
.....+.|.+-++.-.|......||||+ .|+.++ +|-.-++
T Consensus 288 ~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 288 LEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2334456777777778855556788887 677755 7754443
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=4.2e-08 Score=81.11 Aligned_cols=173 Identities=13% Similarity=0.082 Sum_probs=124.3
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC-cEEEEE
Q 021453 38 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE-LVYLFE 115 (312)
Q Consensus 38 ~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~-~i~iwd 115 (312)
|++-.+.+++..+. |...+.+...+-. +..+|...|.-..+..+++-++.+ .|| .+-|||
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-----------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd 388 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-----------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD 388 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee-----------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEe
Confidence 44433378888775 7777777654431 114566778888888888755555 576 899999
Q ss_pred cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEE
Q 021453 116 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 195 (312)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 195 (312)
..++ ..+.+...-+. |.++.. +++|++++++.....|.+.|+.++.....=+...+-|+.
T Consensus 389 ~~~~-----------------e~kr~e~~lg~--I~av~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItd 448 (668)
T COG4946 389 KDGG-----------------EVKRIEKDLGN--IEAVKV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITD 448 (668)
T ss_pred cCCc-----------------eEEEeeCCccc--eEEEEE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEE
Confidence 9986 55566666544 999998 999999999999999999999999875554555678999
Q ss_pred EEEcCCCCeEEEEeCCC----cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE
Q 021453 196 LEPHPHIPMFATCGIEK----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 196 v~~~p~~~~l~t~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
+.|||+++++|-+--+| .|+++|+.++++.........-+.. ++.+++++|.-
T Consensus 449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP-aFD~d~ryLYf 505 (668)
T COG4946 449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP-AFDPDGRYLYF 505 (668)
T ss_pred EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc-ccCCCCcEEEE
Confidence 99999999999887665 6899999998764333222111111 24556666544
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=9.1e-09 Score=81.54 Aligned_cols=228 Identities=14% Similarity=0.166 Sum_probs=134.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-----cCCCCCC-CCcccccccccccCCCccEEEEEEccCCC--
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW-----YSPISSD-TPVDTFCPRHLIGKNNIHITGLAYSNTSE-- 101 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 101 (312)
..-|.++.|...| .+||||..+|.|.++.-....- ....+.. .....+. . ..-...|..+.|.+++.
T Consensus 25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLk--S--leieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLK--S--LEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhh--h--hhhhhhhhhceecCCCCcc
Confidence 3458899999999 8999999999999997553321 0000000 0000000 0 01246788999999875
Q ss_pred -eEEEecCCcEEEEEcCCCcCCCCC-------------cCCcccccC------CCCCceEe-cccCCceeeEEEEecCCC
Q 021453 102 -LLISYNDELVYLFEKNMGLGPSPL-------------SLSPEDLQK------REEPQVYS-GHRNSQTVKGVNFFGPND 160 (312)
Q Consensus 102 -~l~s~~d~~i~iwd~~~~~~~~~~-------------~~~~~~~~~------~~~~~~~~-~~~~~~~v~~v~~~s~~~ 160 (312)
+|+++.|.+|++|-+......... +++.--+.. ..+.+.+. .|. -.|.++++ +.++
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt--yhiNSIS~-NsD~ 176 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT--YHINSISV-NSDK 176 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce--eEeeeeee-cCcc
Confidence 777789999999998654311110 000000111 01122221 233 33889998 7888
Q ss_pred CEEEEeccCceEEEEeccCCe-e--EEEeecC-----ccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCC-------C
Q 021453 161 EYVMSGSDCGHLFIWKKKGGK-L--VRLMVGD-----RHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD-------F 224 (312)
Q Consensus 161 ~~l~~~~~dg~v~iwd~~~~~-~--~~~~~~~-----~~~v~~v~~~p~~-~~l~t~~~d~~i~iwd~~~~~-------~ 224 (312)
+.++++ .|=.|.+|++.-.. . +..++.+ +.-|++..|||.. ..|+-.+.-|+|++-|++... +
T Consensus 177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 888776 57889999976322 2 2233333 3468899999975 557788889999999998432 1
Q ss_pred CCCCC--C----hhh---hhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021453 225 PPLPD--N----AEK---IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 225 ~~~~~--~----~~~---~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
...+. . -.. -+....++.+++++++- .-.++++||++....+
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dyltvk~wD~nme~~p 306 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLTVKLWDLNMEAKP 306 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-ccceeEEEeccccCCc
Confidence 11110 0 011 12344455667776653 2278999998654333
No 262
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.05 E-value=1.9e-09 Score=82.13 Aligned_cols=206 Identities=14% Similarity=0.157 Sum_probs=118.3
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec------CCcEEEEEcC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN------DELVYLFEKN 117 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------d~~i~iwd~~ 117 (312)
+.++++..||.+.+++.+..... ...+...|. .-.+.+....++++.++. -+..+.|+++
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~-------------~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLAL-------------MSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred CceEecCCCceEEEEechHHHhh-------------hhhcccccc-cccccceeecccEEecCCcceEeeccceeeeccc
Confidence 57999999999999998752100 000001111 111223333445454432 3445666664
Q ss_pred CCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCe-eEEEeecCccceEE
Q 021453 118 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQ 195 (312)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~ 195 (312)
.. +.... .+.....|++++- +|. .+.+++|+.||.+.+||.+... +...++.|+..+..
T Consensus 168 p~----------------~t~~~--~~~~~~~v~~l~~-hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~e 228 (319)
T KOG4714|consen 168 PI----------------KTLIP--SKKALDAVTALCS-HPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWE 228 (319)
T ss_pred cc----------------ccccc--cccccccchhhhC-CcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhh
Confidence 32 12111 1222223888887 565 4567888999999999998764 34556789999999
Q ss_pred EEEcCCCC-eEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccceeEeec
Q 021453 196 LEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRY 274 (312)
Q Consensus 196 v~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~ 274 (312)
+-|||... .|+++++||.+-.||..+..+. +. ....+ ...+|-.-.....+.+-.+..........+..
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas~~~l~-i~-~~~s~--------~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV 298 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDASTTFLS-IS-NQASV--------ISSWLSGDPVKSRIEITSLLPSRSLSINSFDV 298 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCCCceEE-ec-Ccccc--------ccccccCCcccceEeeeccccccceeeeeeec
Confidence 99999665 5999999999999998763322 11 11111 11122222222334444443333333334444
Q ss_pred CCCccCCCCCCCeEEEee
Q 021453 275 NAADFESDEEEGETYLLG 292 (312)
Q Consensus 275 ~~~~~~~~~~~~~v~~~~ 292 (312)
-+..+..+.+.+.||+.+
T Consensus 299 ~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 299 LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCceEEeccccceEEEec
Confidence 566677777777788764
No 263
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.04 E-value=3.1e-08 Score=83.49 Aligned_cols=186 Identities=12% Similarity=0.118 Sum_probs=116.8
Q ss_pred cEE-EEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcC
Q 021453 44 NYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLG 121 (312)
Q Consensus 44 ~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 121 (312)
+++ ++-..++.|.+.|..+.+.+ ..+ .........+.|+|+|+++..+ .|+.|.++|+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~--------------~~i-~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-- 68 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVV--------------ARI-PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG-- 68 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEE--------------EEE-E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--
T ss_pred cEEEEEecCCCEEEEEECCCCeEE--------------EEE-cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--
Confidence 455 45567899999999987632 222 2222234457899999977665 6999999999987
Q ss_pred CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCCeeEEEeecC-------ccce
Q 021453 122 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD-------RHVV 193 (312)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-------~~~v 193 (312)
+.++.++... ...++++ +++|+++++++ ..+.+.++|..+.++++.+... ..++
T Consensus 69 --------------~~v~~i~~G~---~~~~i~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv 130 (369)
T PF02239_consen 69 --------------KVVATIKVGG---NPRGIAV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV 130 (369)
T ss_dssp --------------SEEEEEE-SS---EEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E
T ss_pred --------------cEEEEEecCC---CcceEEE-cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc
Confidence 6776766433 2688998 99999998775 6899999999999999888643 2467
Q ss_pred EEEEEcCCCCeEEEEeCC-CcEEEccCCCCCCCCC-CCChhhhhhhhccCCCCceeEE-ecCCceEEEEEeccc
Q 021453 194 NQLEPHPHIPMFATCGIE-KTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRIT-LTPDVIMHVLRLQRR 264 (312)
Q Consensus 194 ~~v~~~p~~~~l~t~~~d-~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~i~~~~~~ 264 (312)
..+..+|..+.++..-.| +.|.+-|......... .......+....+.+++++++. ...+..+-++|..+.
T Consensus 131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 788889998876666554 7787778665432110 0112222333456777776544 555678888886655
No 264
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.03 E-value=1e-09 Score=60.47 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=36.9
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021453 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd 218 (312)
++++..+.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=8.1e-09 Score=83.31 Aligned_cols=161 Identities=8% Similarity=0.048 Sum_probs=104.5
Q ss_pred EEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC
Q 021453 91 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 169 (312)
Q Consensus 91 i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d 169 (312)
...+..++.++++|.+ ++....+++...... ..++...+.....+..+..+.. +......-.+++.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~------------~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK------------GAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGDV 131 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC------------cceeeeEeecccCcceeeeeec-cceEEEEeecCCc
Confidence 4455678888888887 577777777765410 1134444444444333444443 3333333445556
Q ss_pred ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-CCCCCCCC-CChhhhhhhhccCCCCcee
Q 021453 170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTDFPPLP-DNAEKIMKANKQGREDHSR 247 (312)
Q Consensus 170 g~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l 247 (312)
..+.+|....+.+ ..+.+|-..+++|+|+||+++++|+..|..||+-... ...+..+. +|..-+-... . .++..|
T Consensus 132 ~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is-l-~~~~~L 208 (390)
T KOG3914|consen 132 YSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS-L-TDNYLL 208 (390)
T ss_pred eeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee-e-ccCcee
Confidence 6677776665443 4556899999999999999999999999999996644 33444443 4555442222 2 244568
Q ss_pred EEecCCceEEEEEecccCcc
Q 021453 248 ITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 248 ~s~~~d~~i~i~~~~~~~~~ 267 (312)
++++.|+++++||+.++..+
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eecCCCCcEEEEecccCCcc
Confidence 99999999999999887554
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=1.2e-07 Score=90.19 Aligned_cols=225 Identities=10% Similarity=0.116 Sum_probs=128.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-ccCCCccEEEEEEcc-CCCeEEEe-cC
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSN-TSELLISY-ND 108 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~s~-~d 108 (312)
....+++++++..++++-..++.|+.+|+.++.+............+..... ....-.....++++| ++.++++. .+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 4578999998733444445668899999877653211110000000000000 000012345889999 45566664 68
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc----cCCceeeEEEEecCCCCEE-EEeccCceEEEEeccCCeeE
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH----RNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~ 183 (312)
+.|++||..++.... +.... ......+. ........+++ +|+++.| ++-+.++.|++||+.++...
T Consensus 705 ~~I~v~d~~~g~v~~---~~G~G-----~~~~~~g~~~~~~~~~~P~GIav-spdG~~LYVADs~n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 705 HQIWEYNISDGVTRV---FSGDG-----YERNLNGSSGTSTSFAQPSGISL-SPDLKELYIADSESSSIRALDLKTGGSR 775 (1057)
T ss_pred CeEEEEECCCCeEEE---EecCC-----ccccCCCCccccccccCccEEEE-eCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 999999987652000 00000 00000000 00012567898 8998854 55667799999999876532
Q ss_pred EEeec-------------C--------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChh----------
Q 021453 184 RLMVG-------------D--------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE---------- 232 (312)
Q Consensus 184 ~~~~~-------------~--------~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~---------- 232 (312)
....+ + -.....++++|+|..+++-..++.|++||..++.+..+.+...
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence 11100 0 1134689999999998888899999999998765433221110
Q ss_pred ---hhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021453 233 ---KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 233 ---~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
....-....++++++++-+.++.|++|++.+..
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 011222345678899999999999999987764
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.4e-07 Score=78.14 Aligned_cols=197 Identities=16% Similarity=0.229 Sum_probs=128.9
Q ss_pred CccceEEEEEcCC-CCcEEEE-----EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-
Q 021453 29 NSIRLNAIVIDPR-NPNYFAV-----GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE- 101 (312)
Q Consensus 29 h~~~v~~~~~~p~-~~~~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 101 (312)
|..+|+.+.++|. .+..+|+ ++.-..++||........ .++ ..+.++. ..-..+.|++-|.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~------~~~---a~ksFFk---adkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH------QPV---ANKSFFK---ADKVQMKWNKLGTA 231 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc------chh---hhccccc---cceeEEEeccCCce
Confidence 5678999999997 3345555 355678999988733211 011 1111212 2223678998886
Q ss_pred --eEEEec-CC---------cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE--ec
Q 021453 102 --LLISYN-DE---------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS--GS 167 (312)
Q Consensus 102 --~l~s~~-d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~--~~ 167 (312)
+|++.. |. ++++.++.+. .....+. .. ++|.++.| ++++..+++ |-
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~----------------s~~V~L~-k~--GPVhdv~W-~~s~~EF~VvyGf 291 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGE----------------SVSVPLL-KE--GPVHDVTW-SPSGREFAVVYGF 291 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCc----------------eEEEecC-CC--CCceEEEE-CCCCCEEEEEEec
Confidence 233333 54 4788887632 2222221 23 45999999 899976654 45
Q ss_pred cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCC-CCCCCChhhhhhhhccCCC
Q 021453 168 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGRE 243 (312)
Q Consensus 168 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~---d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 243 (312)
.-..+.|||++ +.++..+. .++=+++-|+|.|++++.+|. -|.|-|||..+.+. ..+. .... ....|+++
T Consensus 292 MPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-a~~t--t~~eW~Pd 365 (566)
T KOG2315|consen 292 MPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK-AANT--TVFEWSPD 365 (566)
T ss_pred ccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc-cCCc--eEEEEcCC
Confidence 67789999997 78887775 456678999999999888774 48999999988664 3332 2222 33458999
Q ss_pred CceeEEecC------CceEEEEEecc
Q 021453 244 DHSRITLTP------DVIMHVLRLQR 263 (312)
Q Consensus 244 ~~~l~s~~~------d~~i~i~~~~~ 263 (312)
+.++++++. |+.++||+...
T Consensus 366 Ge~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CcEEEEEeccccEEecCCeEEEEecC
Confidence 999887665 57889998653
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=3.2e-07 Score=78.81 Aligned_cols=176 Identities=13% Similarity=0.075 Sum_probs=106.3
Q ss_pred ceEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec
Q 021453 32 RLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~ 107 (312)
......|+|++..+++..+. +..|.++|+.+++.. .+ ....+......|+|||+.++. ..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------------~l-t~~~g~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------------KI-ASSQGMLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------------EE-ecCCCcEEeeEECCCCCEEEEEEc
Confidence 56789999999544554333 356888898877521 11 112344556789999985543 32
Q ss_pred ---CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccCCe
Q 021453 108 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGK 181 (312)
Q Consensus 108 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~ 181 (312)
+..|+++|+.++ . .+.+..+... .....| +|+|+.|+..+. .+ .|++.|+.+++
T Consensus 253 ~~g~~~Iy~~dl~~g----------------~-~~~LT~~~~~--d~~p~~-SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 253 PKGQPDIYLYDTNTK----------------T-LTQITNYPGI--DVNGNF-VEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred cCCCcEEEEEECCCC----------------c-EEEcccCCCc--cCccEE-CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 457888898765 2 3333333321 234568 999987766553 23 68888888777
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCC---------CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeE
Q 021453 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE---------KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRI 248 (312)
Q Consensus 182 ~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (312)
..+.... .. ....|+|+|+.++..+.. ..|.+.|+.++....+.... ......|++++..++
T Consensus 313 ~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 313 VEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQFPRFSSDGGSIM 383 (419)
T ss_pred eEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcCCeEECCCCCEEE
Confidence 6443321 11 134899999997766643 26788888887755554321 112233566665444
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=2.9e-07 Score=70.81 Aligned_cols=190 Identities=10% Similarity=-0.005 Sum_probs=119.2
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEEEecCCcEEEEEcCCCcC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYNDELVYLFEKNMGLG 121 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~d~~i~iwd~~~~~~ 121 (312)
-+||.|+..|...+|...+.+. ...+...|...|+-+.=.-+. .+++++.|.++++.++..+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~--------------h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~-- 148 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDG--------------HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD-- 148 (344)
T ss_pred cEEEeccccceeeeecccCccc--------------ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecC--
Confidence 4789999999999999987651 111112222222221111112 3566667888888888764
Q ss_pred CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeE-EEe-ecCccceEEEEE
Q 021453 122 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLV-RLM-VGDRHVVNQLEP 198 (312)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~-~~~-~~~~~~v~~v~~ 198 (312)
...... |.....+.++++ +++++++++.+....|..|.+... +.+ ... ...+..-.+..|
T Consensus 149 --------------s~~~~~--h~~~~~~ns~~~-snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 149 --------------SNKFAV--HNQNLTQNSLHY-SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred --------------ccccee--eccccceeeeEE-cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 222222 222123788998 999999999999999999987643 222 212 222334467889
Q ss_pred cCCCCeEEEEeCCCcEEEccCCCCCC-----CCCCCChhhhhhhhccCCC--CceeEEecCCceEEEEEecccCc
Q 021453 199 HPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGRE--DHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 199 ~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
+.....+|++..||++.|||++.... ..-..+.+..+....+++- -.+|+-.-.-+.+.+.|++....
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 99999999999999999999986532 2223345555555556542 23344444447788888876543
No 270
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.95 E-value=6.5e-07 Score=75.39 Aligned_cols=201 Identities=12% Similarity=0.117 Sum_probs=120.5
Q ss_pred ceEEEEEcCCCCcEEEEEeC----CCeEEEEEccCC--eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 32 RLNAIVIDPRNPNYFAVGGS----DEYARVYDIRKC--HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~----d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
...-++++|++ ++|++... ++.|..|.+... ++. ..............++++|++++|++
T Consensus 38 ~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~-------------~~~~~~~~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 38 NPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLT-------------LLNSVPSGGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp SECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEE-------------EEEEEEESSSCEEEEEECTTSSEEEE
T ss_pred CCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeE-------------EeeeeccCCCCcEEEEEecCCCEEEE
Confidence 35668899998 67766654 679999998763 321 11111112445668999999997777
Q ss_pred e--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc---eEe--c------ccCCceeeEEEEecCCCCEEEEec-cCce
Q 021453 106 Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ---VYS--G------HRNSQTVKGVNFFGPNDEYVMSGS-DCGH 171 (312)
Q Consensus 106 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~------~~~~~~v~~v~~~s~~~~~l~~~~-~dg~ 171 (312)
+ .+|.|.++++.... .+.. .+. + ........++.+ +|+++++++.. ....
T Consensus 104 any~~g~v~v~~l~~~g---------------~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~-~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDG---------------SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF-SPDGRFVYVPDLGADR 167 (345)
T ss_dssp EETTTTEEEEEEECTTS---------------EEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTE
T ss_pred EEccCCeEEEEEccCCc---------------ccceeeeecccCCCCCcccccccccceeEEE-CCCCCEEEEEecCCCE
Confidence 5 49999999997631 1111 111 0 011123678888 99999887754 3457
Q ss_pred EEEEeccCCe--e--EEEee-cCccceEEEEEcCCCCeEEEEe-CCCcEEEccCC--CCCC------CCCCCC-h-hhhh
Q 021453 172 LFIWKKKGGK--L--VRLMV-GDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM--PTDF------PPLPDN-A-EKIM 235 (312)
Q Consensus 172 v~iwd~~~~~--~--~~~~~-~~~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~--~~~~------~~~~~~-~-~~~~ 235 (312)
|.+|++.... . ...+. ........++|+|+++++.... .+++|.++++. .+.+ ..++.. . ....
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999987654 2 12222 2234678999999999865554 67889999887 3221 112110 0 0012
Q ss_pred hhhccCCCCceeE-EecCCceEEEEEec
Q 021453 236 KANKQGREDHSRI-TLTPDVIMHVLRLQ 262 (312)
Q Consensus 236 ~~~~~~~~~~~l~-s~~~d~~i~i~~~~ 262 (312)
.....++++++|. +-.....|.++++.
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 2334567777655 45566889999984
No 271
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=3.5e-09 Score=83.89 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=109.8
Q ss_pred eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-
Q 021453 102 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG- 180 (312)
Q Consensus 102 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~- 180 (312)
.+++|.+..+-+-|++++ ..+.|. .... |.++.| ...++++..|+..|.|..+|++.+
T Consensus 227 hfs~G~sqqv~L~nvetg-----------------~~qsf~-sksD--VfAlQf-~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETG-----------------HQQSFQ-SKSD--VFALQF-AGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred eecccccceeEEEEeecc-----------------cccccc-cchh--HHHHHh-cccCCeeEecccCCcEEEEEeeecc
Confidence 344466888888898886 445555 3333 888998 778999999999999999999864
Q ss_pred ----eeEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhh-hccCCCCceeEEe
Q 021453 181 ----KLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKA-NKQGREDHSRITL 250 (312)
Q Consensus 181 ----~~~~~~~~~~~~v~~v~~~p-~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~l~s~ 250 (312)
.+...+. |...|+++..-. ++++|++.+.+|+|++||++.-+ +.++.+|.+..... .-...+...++++
T Consensus 286 qG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 286 QGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred cCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence 3444444 888999988777 77889999999999999988543 45566776654222 2244577889999
Q ss_pred cCCceEEEEEecccCccc
Q 021453 251 TPDVIMHVLRLQRRQTLA 268 (312)
Q Consensus 251 ~~d~~i~i~~~~~~~~~~ 268 (312)
+.|...|+|.++.++.+.
T Consensus 365 GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred cCeeEEEEEecccCceee
Confidence 999999999999876553
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.90 E-value=3e-07 Score=87.53 Aligned_cols=187 Identities=10% Similarity=0.010 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCCc
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDEL 110 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~ 110 (312)
-..++|+|++..++++.+.++.|++||..++............ ...........-.....|+++|++. ++++. .++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~-~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER-NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc-cCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 3578999955477788888999999999876532110000000 0000000001123456899999998 44443 5899
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc------CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021453 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR------NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
|++||+.++...... ..+.........+-... .......+++ +++|+.+++-..++.|++||..++....
T Consensus 764 Irv~D~~tg~~~~~~---gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 764 IRALDLKTGGSRLLA---GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTT 839 (1057)
T ss_pred EEEEECCCCcEEEEE---ecccccCcccccccCCCCchhhhhccCCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 999998764200000 00000000000000000 0011457888 8999988888999999999998776543
Q ss_pred Eee-------------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 185 LMV-------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 185 ~~~-------------~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
... +.-.....++++++|+.+++.+.++.|++||+.+++.
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 321 1112467899999999988888999999999988653
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=1.7e-07 Score=80.52 Aligned_cols=157 Identities=8% Similarity=-0.001 Sum_probs=92.7
Q ss_pred cceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 107 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~- 107 (312)
+......|+|+|..++++.+.+ ..|.++++.+++.. .+ ..+........|+|||+.|+-.+
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~---------------~L-T~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT---------------QI-TNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE---------------Ec-ccCCCccCccEECCCCCEEEEEEC
Confidence 3456778999995555555544 45777787766521 11 11122223457999998555432
Q ss_pred -CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---------ceEEEE
Q 021453 108 -DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---------GHLFIW 175 (312)
Q Consensus 108 -d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---------g~v~iw 175 (312)
.+ .|++.|+.++ +..+... ... ....| +|+|++|+..... ..|.+.
T Consensus 297 r~g~~~Iy~~dl~~g----------------~~~rlt~-~g~----~~~~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 297 RLGYPNIFMKKLNSG----------------SVEQVVF-HGK----NNSSV-STYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred CCCCceEEEEECCCC----------------CeEeCcc-CCC----cCceE-CCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 23 6888888765 2222211 111 11367 9999988766543 368888
Q ss_pred eccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCC
Q 021453 176 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPL 227 (312)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~ 227 (312)
|+.+++. ..+... .......|+|+|+.++....+ ..+.+.++.......+
T Consensus 355 d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 355 STNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred ECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 9887764 344332 233458899999986665532 2466677766543333
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.90 E-value=3.7e-09 Score=99.66 Aligned_cols=151 Identities=15% Similarity=0.262 Sum_probs=116.6
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-c-
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N- 107 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~- 107 (312)
.+|+.+.|+.+| +.+..+..||.+.+|..... +..-...|........|-. ..+++ + +
T Consensus 2252 s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~pk----------------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~ 2312 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASPK----------------PYTSWQCHNKALSDFRFIG--SLLATAGRSS 2312 (2439)
T ss_pred chhhhhhhcccC-CceeeeccCCceeecccCCc----------------ceeccccCCccccceeeee--hhhhccccCC
Confidence 678999999999 89999999999999998722 2222267888888888876 44454 3 2
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
++.+.+||..-.. ..-..-..|... +++++| -|..+.|++|+.+|.|++||++..+.++.+
T Consensus 2313 d~~n~~lwDtl~~~---------------~~s~v~~~H~~g--aT~l~~-~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPP---------------MNSLVHTCHDGG--ATVLAY-APKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred CCCcccchhcccCc---------------ccceeeeecCCC--ceEEEE-cCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 7789999975431 122223678776 999999 899999999999999999999988777666
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCC
Q 021453 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP 228 (312)
Q Consensus 187 ~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~ 228 (312)
+. ++ ...+|++++..|.|+||++.... +.+++
T Consensus 2375 ~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2375 QA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 53 44 66789999999999999988754 34444
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=6.3e-08 Score=83.99 Aligned_cols=225 Identities=12% Similarity=0.180 Sum_probs=128.6
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 105 (312)
-||+..|.-+.|+.+. +.|.+...+|-|.+|-+-.+.+. ...+-......|.++.|+.+|..++.
T Consensus 68 eGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~-------------EEMiNnRnKSvV~SmsWn~dG~kIcIv 133 (1189)
T KOG2041|consen 68 EGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWC-------------EEMINNRNKSVVVSMSWNLDGTKICIV 133 (1189)
T ss_pred ccCcceEEEEEecccc-ccccccCCCceEEEEeeecccHH-------------HHHhhCcCccEEEEEEEcCCCcEEEEE
Confidence 4899999999999988 78999999999999999988753 22232455678999999999986665
Q ss_pred ecCCcEEEEEcCCCc-------CC--------CCCcCCcccccCCCCCceEec--------ccCC-c-----------ee
Q 021453 106 YNDELVYLFEKNMGL-------GP--------SPLSLSPEDLQKREEPQVYSG--------HRNS-Q-----------TV 150 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~--------~~~~-~-----------~v 150 (312)
..||.|.+=.+..+. +. .+...-...+..+ ....+.. +... . .+
T Consensus 134 YeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ang-e~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~ki 212 (1189)
T KOG2041|consen 134 YEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANG-ETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKI 212 (1189)
T ss_pred EccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCC-cEEEecccccHHHhhhhceEEeeeeeecCCCccc
Confidence 579988766555431 00 0000000000000 0000000 0000 0 01
Q ss_pred eEEEEe-------cCCCCEEEEeccCceEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---------c
Q 021453 151 KGVNFF-------GPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---------T 213 (312)
Q Consensus 151 ~~v~~~-------s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~---------~ 213 (312)
..+.|+ .|+...|+.+...|.+.+-.-.+ ..++ .+. ..-.+..+.|+++|..||.++.+. .
T Consensus 213 a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~ 290 (1189)
T KOG2041|consen 213 AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNK 290 (1189)
T ss_pred cceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EEe-cccEeecceecCCCcEEEEccCcccccCccccce
Confidence 122221 23444555555555555443221 2222 121 124577889999999999998542 5
Q ss_pred EEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcccee
Q 021453 214 VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 270 (312)
Q Consensus 214 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~ 270 (312)
|.+|.+-+....++......+.... |.. ..+.++...|+.+.+-+++..-+.-|.
T Consensus 291 v~Fysp~G~i~gtlkvpg~~It~ls-WEg-~gLriA~AvdsfiyfanIRP~ykWgy~ 345 (1189)
T KOG2041|consen 291 VHFYSPYGHIVGTLKVPGSCITGLS-WEG-TGLRIAIAVDSFIYFANIRPEYKWGYI 345 (1189)
T ss_pred EEEeccchhheEEEecCCceeeeeE-EcC-CceEEEEEecceEEEEeecccceEEEe
Confidence 7777766655555543444443333 322 345667777888888887765544443
No 276
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=1e-07 Score=74.84 Aligned_cols=184 Identities=15% Similarity=0.166 Sum_probs=117.7
Q ss_pred cceEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCC----------CCCCcc-----------------cccccc
Q 021453 31 IRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPIS----------SDTPVD-----------------TFCPRH 82 (312)
Q Consensus 31 ~~v~~~~~~p-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~-----------------~~~~~~ 82 (312)
..|..+.|.. .+..-++..+.|.+|++|.+....+....+ -..|+. ...+..
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 4578888865 344567777899999999997663221110 011111 111111
Q ss_pred -cccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC---ceeeEEEEecC
Q 021453 83 -LIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGP 158 (312)
Q Consensus 83 -~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~s~ 158 (312)
....|...|.++.|+.+.+.+.++.|-.|.+|++.... .++.+ ..++.|.-. ..|++..|+..
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D----~sFnI---------VDiKP~nmeeLteVItSaeFhp~ 232 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIID----GSFNI---------VDIKPHNMEELTEVITSAEFHPE 232 (460)
T ss_pred eccccceeEeeeeeecCchheeeeccceeeeeccccccC----CceEE---------EeccCccHHHHHHHHhhcccCHh
Confidence 22568888999999999999999999999999987542 11111 111112110 23778888333
Q ss_pred CCCEEEEeccCceEEEEeccCCeeE------EE----------eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 159 NDEYVMSGSDCGHLFIWKKKGGKLV------RL----------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~------~~----------~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
....+.-.+..|.|++-|++..... .. +.+-...|.++.|+|+|+++++-+. -+|+|||.+..
T Consensus 233 ~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 233 MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred HcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 4566777888999999999843221 11 1112346889999999999988764 68999998865
Q ss_pred C--CCCCC
Q 021453 223 D--FPPLP 228 (312)
Q Consensus 223 ~--~~~~~ 228 (312)
+ +.+++
T Consensus 312 k~pikTi~ 319 (460)
T COG5170 312 KNPIKTIP 319 (460)
T ss_pred cCCceeec
Confidence 4 45544
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.83 E-value=1.5e-06 Score=67.80 Aligned_cols=168 Identities=15% Similarity=0.222 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-------CeEEE
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-------ELLIS 105 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~s 105 (312)
=.-++|||++ .+||.+...|+|++||+....+..... . .. ....-...|..+.|-+.. ++|+.
T Consensus 46 WRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I~p-~---~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi 115 (282)
T PF15492_consen 46 WRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVIPP-A---MS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVI 115 (282)
T ss_pred heEEEECCCC-cEEEEEcCCCeEEEEecccceeEEcCc-c---cc-----cCCccccceeeeEeeccccccccceeEEEE
Confidence 3579999999 899999999999999998655432211 0 00 112224567777665432 35666
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec---ccCCceeeEEEEecCCCCEEEEeccCc-----------e
Q 021453 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG---HRNSQTVKGVNFFGPNDEYVMSGSDCG-----------H 171 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~s~~~~~l~~~~~dg-----------~ 171 (312)
.-.|.++-|-+..+. .+..+....+.. +... |.++.| +|..++|+.|+... -
T Consensus 116 ~Y~G~L~Sy~vs~gt-----------~q~y~e~hsfsf~~~yp~G--i~~~vy-~p~h~LLlVgG~~~~~~~~s~a~~~G 181 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGT-----------NQGYQENHSFSFSSHYPHG--INSAVY-HPKHRLLLVGGCEQNQDGMSKASSCG 181 (282)
T ss_pred eccceeeeEEEEccc-----------CCcceeeEEEEecccCCCc--eeEEEE-cCCCCEEEEeccCCCCCccccccccC
Confidence 668877766653210 001123333332 2334 999999 89988888776411 2
Q ss_pred EEEEeccCCeeE-----------------------E---Ee---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 172 LFIWKKKGGKLV-----------------------R---LM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 172 v~iwd~~~~~~~-----------------------~---~~---~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
+..|.+-++.+- . .+ ......|..|..||+|..||+...+|.|.+|++.+-
T Consensus 182 LtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 182 LTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 555653322110 0 00 112457889999999999999999999999998876
Q ss_pred CC
Q 021453 223 DF 224 (312)
Q Consensus 223 ~~ 224 (312)
.+
T Consensus 262 ~~ 263 (282)
T PF15492_consen 262 RL 263 (282)
T ss_pred hh
Confidence 53
No 278
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.83 E-value=1.8e-06 Score=72.75 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=102.4
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-C
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D 108 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d 108 (312)
....++.|+|++..++++--....|.+|++..... .+.. ...+..........++|+|+++++.. .. +
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~--------~l~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s 213 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG--------KLTP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELS 213 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS---------TEEE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTT
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc--------eEEE--eeccccccCCCCcEEEEcCCcCEEEEecCCC
Confidence 45788999999944444444556899999976541 0000 11111233556789999999996655 44 8
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc----cCCceeeEEEEecCCCCEEEEec-cCceEEEEecc--CCe
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH----RNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKK--GGK 181 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~--~~~ 181 (312)
+.|.++++....+ ..+..+..... ........+++ +|+|++|+++. ....|.+|++. +++
T Consensus 214 ~~v~v~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 214 NTVSVFDYDPSDG------------SLTEIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp TEEEEEEEETTTT------------EEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred CcEEEEeecccCC------------ceeEEEEeeeccccccccCCceeEEE-ecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 9999999873210 00111222111 11113678888 99999987765 46789999984 333
Q ss_pred --eEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCC
Q 021453 182 --LVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM 220 (312)
Q Consensus 182 --~~~~~~~~~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~ 220 (312)
.+..+.........++++|+|++|++++ .++.|.+|++.
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3344444344578999999999988776 66789999764
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.81 E-value=7.7e-07 Score=83.37 Aligned_cols=207 Identities=10% Similarity=0.096 Sum_probs=123.6
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCC-------CCCCc-----------------------cccc
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-------SDTPV-----------------------DTFC 79 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~-----------------------~~~~ 79 (312)
..+|.+++|||++ .+|+..+.++++.+... +.+++.+.. ...++ +...
T Consensus 120 d~GI~a~~WSPD~-Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 120 DSGILAASWSPDE-ELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred cCcEEEEEECCCc-CEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 4589999999999 79999988999887753 232221110 00000 0000
Q ss_pred c----cccccCCCccEEEEEEccCCCeEEEec----C---CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc
Q 021453 80 P----RHLIGKNNIHITGLAYSNTSELLISYN----D---ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 148 (312)
Q Consensus 80 ~----~~~~~~~~~~i~~~~~~~~~~~l~s~~----d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
. ...+. ....-..|+|-.||+++|.+. . ..++||+.+. .+..+...-. +
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-----------------~L~stSE~v~--g 257 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-----------------ELQSTSEPVD--G 257 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-----------------eEEeccccCC--C
Confidence 0 00111 334566899999999888742 3 3689998763 2222222111 1
Q ss_pred eeeEEEEecCCCCEEEEecc---CceEEEEeccCCeeEEEee----cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 149 TVKGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLMV----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
--..++| .|.|++||+... ...|.+|.-+ |-.-..|. .....|..+.|++++..||..-.|. |.+|-...
T Consensus 258 Le~~l~W-rPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 258 LEGALSW-RPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred ccCCccC-CCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 1456888 999999998765 4567777743 43333332 3456899999999999999977555 99998877
Q ss_pred CCC---CCCCCChhhhhhhhccCCC-CceeEEecCCceEEEEEe
Q 021453 222 TDF---PPLPDNAEKIMKANKQGRE-DHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 222 ~~~---~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~i~~~ 261 (312)
... ..+.-..........|+++ ...|..++.++.+..+++
T Consensus 335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 652 1111111111222557764 455666666666655543
No 280
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1.3e-08 Score=80.80 Aligned_cols=134 Identities=15% Similarity=0.106 Sum_probs=97.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-c
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-N 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~ 107 (312)
++.|.++.|...+ +++..|..+|.|..+|++.+..-.. ...+. --|...|+++..-. ++++|.++ .
T Consensus 252 ksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~----------~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M 319 (425)
T KOG2695|consen 252 KSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNG----------WCAQR-LYHDSSVTSLQILQFSQQKLMASDM 319 (425)
T ss_pred chhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCC----------cceEE-EEcCcchhhhhhhccccceEeeccC
Confidence 5678888998877 7999999999999999997631100 11111 34778888887665 55666554 6
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
+|+|.+||++.-+ ..+-++.+.||.+...-.-+-. .+....+++++.|.-.+||.++.++.+.+++
T Consensus 320 ~gkikLyD~R~~K-------------~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 320 TGKIKLYDLRATK-------------CKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred cCceeEeeehhhh-------------cccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccC
Confidence 9999999998651 1123788999976533223333 6777888999999999999999999998886
Q ss_pred cC
Q 021453 188 GD 189 (312)
Q Consensus 188 ~~ 189 (312)
-.
T Consensus 386 f~ 387 (425)
T KOG2695|consen 386 FP 387 (425)
T ss_pred CC
Confidence 43
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.80 E-value=2.1e-06 Score=71.19 Aligned_cols=206 Identities=13% Similarity=0.091 Sum_probs=122.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe-C-CCeEEEEEccCCeecCCCCCCCCcccc
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-S-DEYARVYDIRKCHWYSPISSDTPVDTF 78 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~ 78 (312)
|.+||+.+.+...-+.+...+. -+ ....-..++++|+| +.+++.. . +..|.+.|+.+++.+..+..+.+...+
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~--~~--~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy 153 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPR--FL--VGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF 153 (352)
T ss_pred EEEEECccCcEEeEEccCCCch--hh--ccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence 5688888877655554432210 00 01223478999999 6666554 4 799999999999887655543322221
Q ss_pred ccc------ccccC----------CCccEEEE--------------EEcc-CCCeEEEecCCcEEEEEcCCCcCCCCCcC
Q 021453 79 CPR------HLIGK----------NNIHITGL--------------AYSN-TSELLISYNDELVYLFEKNMGLGPSPLSL 127 (312)
Q Consensus 79 ~~~------~~~~~----------~~~~i~~~--------------~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 127 (312)
... ....+ ........ .|.+ +|+++..+..|.|++.|+...... ..
T Consensus 154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~---~~ 230 (352)
T TIGR02658 154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK---FL 230 (352)
T ss_pred EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce---ec
Confidence 100 00000 00001111 2334 777666665599999997543100 00
Q ss_pred CcccccCCCCCceEecc-----cCCceeeEEEEecCCCCEEEEec----------cCceEEEEeccCCeeEEEeecCccc
Q 021453 128 SPEDLQKREEPQVYSGH-----RNSQTVKGVNFFGPNDEYVMSGS----------DCGHLFIWKKKGGKLVRLMVGDRHV 192 (312)
Q Consensus 128 ~~~~~~~~~~~~~~~~~-----~~~~~v~~v~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~ 192 (312)
.....+... -.+....-+++ +++++.++... ..+.|.++|..+++.+..+.. ...
T Consensus 231 --------~~~~~~~~~~~~~~wrP~g~q~ia~-~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~ 300 (352)
T TIGR02658 231 --------PAIEAFTEAEKADGWRPGGWQQVAY-HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHE 300 (352)
T ss_pred --------ceeeeccccccccccCCCcceeEEE-cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCc
Confidence 111111100 00111344888 89998888743 225799999999999988874 347
Q ss_pred eEEEEEcCCCC-eEEEEe-CCCcEEEccCCCCCC
Q 021453 193 VNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTDF 224 (312)
Q Consensus 193 v~~v~~~p~~~-~l~t~~-~d~~i~iwd~~~~~~ 224 (312)
+..++++|+++ .|++.+ .++.|.+.|..+++.
T Consensus 301 ~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 301 IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 88999999999 766555 688999999988864
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=1.1e-05 Score=64.89 Aligned_cols=212 Identities=8% Similarity=0.142 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCcEEEEEe-CCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--C
Q 021453 33 LNAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D 108 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d 108 (312)
-+-+++++++ ++++++. .-|.|.++-++. +.+....+....... .+ +. .-....+....+.|++++|++.. -
T Consensus 91 p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-~p-~~-rQ~~~h~H~a~~tP~~~~l~v~DLG~ 166 (346)
T COG2706 91 PCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-GP-HE-RQESPHVHSANFTPDGRYLVVPDLGT 166 (346)
T ss_pred CeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCC-CC-Cc-cccCCccceeeeCCCCCEEEEeecCC
Confidence 3778999998 6666664 568999999965 433211110000000 00 00 00122377889999999888863 6
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCC-eeEEEe
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGG-KLVRLM 186 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~-~~~~~~ 186 (312)
..|.+|++..+.. ..... ..+ ..... .+.+.| +|++++..+.++ +++|.+|..+.. ..+..+
T Consensus 167 Dri~~y~~~dg~L-----------~~~~~-~~v-~~G~G--PRHi~F-Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 167 DRIFLYDLDDGKL-----------TPADP-AEV-KPGAG--PRHIVF-HPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred ceEEEEEcccCcc-----------ccccc-ccc-CCCCC--cceEEE-cCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 7899999986510 00011 111 12222 689999 999999876654 899999998763 223333
Q ss_pred ec---------CccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC--CCCCC--CCCChhhhhhhhccCCCCceeEEecC
Q 021453 187 VG---------DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP--TDFPP--LPDNAEKIMKANKQGREDHSRITLTP 252 (312)
Q Consensus 187 ~~---------~~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~ 252 (312)
+. .......+..+|+|++|.++. ....|-+|.+.. +++.. ...........--+.+.+++|++...
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 22 123567888999999988876 344777776543 33211 11111111122224566777777666
Q ss_pred C-ceEEEEEeccc
Q 021453 253 D-VIMHVLRLQRR 264 (312)
Q Consensus 253 d-~~i~i~~~~~~ 264 (312)
+ ..+.++.+...
T Consensus 311 ~sd~i~vf~~d~~ 323 (346)
T COG2706 311 KSDNITVFERDKE 323 (346)
T ss_pred CCCcEEEEEEcCC
Confidence 5 57888876544
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=1.5e-06 Score=66.97 Aligned_cols=147 Identities=10% Similarity=-0.049 Sum_probs=101.0
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCc--cEEEEEEccCCCeEEE-ecCCcEEEEEcCCCc
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI--HITGLAYSNTSELLIS-YNDELVYLFEKNMGL 120 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~ 120 (312)
..+..++.|.++++.++..+.. .. ..|.. .+.+++++++++++++ +....|..|.+....
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~--------------~~---~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSN--------------KF---AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred cceeeccCCcceeEEEEecCcc--------------cc---eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence 3566778889999988875431 00 11222 3778999999998888 567889999886541
Q ss_pred CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE-----EEeecCccceEE
Q 021453 121 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-----RLMVGDRHVVNQ 195 (312)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~v~~ 195 (312)
. ...++...... ..-.+.+| +.....+|++..||.+.|||++..... .+-..|.+.+..
T Consensus 192 e--------------y~~~~~~a~t~-D~gF~~S~-s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 192 E--------------YIENIYEAPTS-DHGFYNSF-SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRV 255 (344)
T ss_pred c--------------eeeeeEecccC-CCceeeee-ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEE
Confidence 0 22232222221 12457778 888889999999999999999864332 223468899999
Q ss_pred EEEcCCCCe--EEEEeCCCcEEEccCCCCC
Q 021453 196 LEPHPHIPM--FATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 196 v~~~p~~~~--l~t~~~d~~i~iwd~~~~~ 223 (312)
+.|+|-|.. |+..-.-+.+.+-|+++..
T Consensus 256 c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 256 CRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 999997765 3333345789999998865
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.74 E-value=1.6e-06 Score=72.12 Aligned_cols=146 Identities=12% Similarity=0.102 Sum_probs=108.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCC-eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDE-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
-+|+.+|.-..+..++ +-++.|..|| .+-|||.+++++. .+ ...-+.|.+++.+++|++++.
T Consensus 356 v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~k---------------r~-e~~lg~I~av~vs~dGK~~vv 418 (668)
T COG4946 356 VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVK---------------RI-EKDLGNIEAVKVSPDGKKVVV 418 (668)
T ss_pred cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEE---------------Ee-eCCccceEEEEEcCCCcEEEE
Confidence 4688889888888877 6899999999 8999999988631 11 344578999999999998888
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc----eEEEEeccCC
Q 021453 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG----HLFIWKKKGG 180 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg----~v~iwd~~~~ 180 (312)
+. ...+.+.|+.++ .....-+... .-|+...| +|+++++|-+--+| .|+++|+..+
T Consensus 419 aNdr~el~vididng----------------nv~~idkS~~--~lItdf~~-~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 419 ANDRFELWVIDIDNG----------------NVRLIDKSEY--GLITDFDW-HPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EcCceEEEEEEecCC----------------CeeEeccccc--ceeEEEEE-cCCceeEEEecCcceeeeeEEEEecCCC
Confidence 75 778999999987 3322222223 34999999 99999999876655 6899999987
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021453 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~v~~~p~~~~l~t~~ 209 (312)
+....- ...+.=.+-+|.|++++|.--+
T Consensus 480 Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 480 KIYDVT-TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEec-CCcccccCcccCCCCcEEEEEe
Confidence 765432 2333335678999999865443
No 285
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.3e-06 Score=71.49 Aligned_cols=111 Identities=9% Similarity=0.057 Sum_probs=73.6
Q ss_pred eeEEEEecCCCCEEEEecc---CceEEEEeccC-C---eeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEccC
Q 021453 150 VKGVNFFGPNDEYVMSGSD---CGHLFIWKKKG-G---KLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAP 219 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~---dg~v~iwd~~~-~---~~~~~~~~~~~~v~~v~~~p~~~~l~t~~---~d~~i~iwd~ 219 (312)
|...+| .|.|..+++-+. ..++.+|.+.+ . +.+..+. ....+.+.|+|.|++++.+. ..|.+.++|.
T Consensus 448 vi~FaW-EP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 448 VIAFAW-EPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred eeeeee-ccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 667778 888887765432 45678887763 2 2233333 34568899999999977664 5789999998
Q ss_pred CCCCCCCCCCChhhhhhhhccCCCCceeEEecCC------ceEEEEEecc
Q 021453 220 MPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQR 263 (312)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~i~~~~~ 263 (312)
.-..............+...|.|.++++++++.- .-.++|+++.
T Consensus 525 ~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 525 DYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred chhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 7533322222222334566799999999998764 4567888764
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.65 E-value=2.2e-07 Score=81.02 Aligned_cols=204 Identities=12% Similarity=0.156 Sum_probs=134.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC---eEEEe
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE---LLISY 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~s~ 106 (312)
..++.++..+|.| +-++.++.-| +.+-|+...- . .+..+..-..-.+....|+|... .+++.
T Consensus 24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~--------~-----ppr~l~h~tpw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPF--------T-----PPRWLHHITPWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred cCcccceeecccc-chhhhhhhcC-eEEEeccCCC--------C-----CceeeeccCcchhcceecccCCCCceeEEec
Confidence 3468899999998 6777777655 4456765332 0 11111111234466788988763 55666
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEEE
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL 185 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~ 185 (312)
+...-.+|++.... ....-..+.+|... ++.+.|.......+++++-|..+..||+++.. ++..
T Consensus 89 s~qkaiiwnlA~ss-------------~~aIef~lhghsra--itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSS-------------SNAIEFVLHGHSRA--ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred CcchhhhhhhhcCC-------------ccceEEEEecCccc--eeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 77777889885431 00222344566644 99999944456788999999999999998754 4444
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+..-......|+|+--...+.+.+..+.|++||++.+. +..+.+|...+........-...+++.+.|++++.|+...
T Consensus 154 ~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 154 TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 44333455789998877776666778899999998765 3555556555533332222345788999999999998654
No 287
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.63 E-value=7.6e-05 Score=62.07 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=50.5
Q ss_pred EcCCCCcEEEEEe---------CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--
Q 021453 38 IDPRNPNYFAVGG---------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-- 106 (312)
Q Consensus 38 ~~p~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-- 106 (312)
++|++..++++.+ .+..|.+||..+.+....+..+..-+. . .......++++|+|++|...
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~-----~---~~~~~~~~~ls~dgk~l~V~n~ 124 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF-----L---VGTYPWMTSLTPDNKTLLFYQF 124 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh-----h---ccCccceEEECCCCCEEEEecC
Confidence 9999955555556 689999999999986544332211000 0 02233478999999977654
Q ss_pred c-CCcEEEEEcCCC
Q 021453 107 N-DELVYLFEKNMG 119 (312)
Q Consensus 107 ~-d~~i~iwd~~~~ 119 (312)
. +..|.+.|+.++
T Consensus 125 ~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 125 SPSPAVGVVDLEGK 138 (352)
T ss_pred CCCCEEEEEECCCC
Confidence 4 889999999887
No 288
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1e-06 Score=71.65 Aligned_cols=92 Identities=8% Similarity=0.131 Sum_probs=69.8
Q ss_pred eeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEE
Q 021453 13 RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT 92 (312)
Q Consensus 13 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 92 (312)
..+...+++.....|+|...|.+++|+|...-++..++.+.+|+|.|+++..++ ... ..+ ..++
T Consensus 176 ~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--------------ssy-~a~-~~~w 239 (463)
T KOG1645|consen 176 QKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--------------SSY-IAY-NQIW 239 (463)
T ss_pred EEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee--------------ehe-ecc-CCce
Confidence 334444555544447889999999999987448889999999999999987632 222 333 6789
Q ss_pred EEEEccCCC-eEEEe-cCCcEEEEEcCCCc
Q 021453 93 GLAYSNTSE-LLISY-NDELVYLFEKNMGL 120 (312)
Q Consensus 93 ~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~ 120 (312)
+++|.-+.. ++.+| ..|.|.+||++...
T Consensus 240 SC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 240 SCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 999998885 66666 59999999998764
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=2.2e-05 Score=62.90 Aligned_cols=189 Identities=11% Similarity=0.054 Sum_probs=116.8
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEc-cCCCeEEEecCCcEEE
Q 021453 35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYL 113 (312)
Q Consensus 35 ~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~d~~i~i 113 (312)
+++|.+..+.++.+-...+.|..|+..+++.. . . . ......+++. +++.++++.. +.+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~--------------~-~-~--~~~~~G~~~~~~~g~l~v~~~-~~~~~ 64 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE--------------V-I-D--LPGPNGMAFDRPDGRLYVADS-GGIAV 64 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE--------------E-E-E--SSSEEEEEEECTTSEEEEEET-TCEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE--------------E-E-e--cCCCceEEEEccCCEEEEEEc-CceEE
Confidence 67899844378888878999999999887621 1 1 1 1126677787 6665555554 45566
Q ss_pred EEcCCCcCCCCCcCCcccccCCCCCceEec--cc-CCceeeEEEEecCCCCEEEEeccC--------ceEEEEeccCCee
Q 021453 114 FEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HR-NSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKKGGKL 182 (312)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~v~~~s~~~~~l~~~~~d--------g~v~iwd~~~~~~ 182 (312)
+|..++ +....... .. .......+++ +++|++.++.... |.|..++.. ++.
T Consensus 65 ~d~~~g----------------~~~~~~~~~~~~~~~~~~ND~~v-d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 65 VDPDTG----------------KVTVLADLPDGGVPFNRPNDVAV-DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV 126 (246)
T ss_dssp EETTTT----------------EEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred EecCCC----------------cEEEEeeccCCCcccCCCceEEE-cCCCCEEEEecCCCccccccccceEEECCC-CeE
Confidence 688775 23222222 11 2234889998 9999977765543 668888877 554
Q ss_pred EEEeecCccceEEEEEcCCCCeEE-EEeCCCcEEEccCCCCCC--------CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~-t~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
..... .-...+.++|+|+++.|+ +-+..+.|..+++..... ..+.... ....-.....++++.++.-..
T Consensus 127 ~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 127 TVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EEEEEETT
T ss_pred EEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEEEEEcCC
Confidence 43333 345678999999999765 556788899988853321 1111111 112223345577888887788
Q ss_pred ceEEEEEec
Q 021453 254 VIMHVLRLQ 262 (312)
Q Consensus 254 ~~i~i~~~~ 262 (312)
+.|.+++-+
T Consensus 205 ~~I~~~~p~ 213 (246)
T PF08450_consen 205 GRIVVFDPD 213 (246)
T ss_dssp TEEEEEETT
T ss_pred CEEEEECCC
Confidence 888888755
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=1.2e-07 Score=51.99 Aligned_cols=38 Identities=24% Similarity=0.688 Sum_probs=34.9
Q ss_pred CCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021453 136 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 136 ~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
+++..+.+|... |.+++| +|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~--i~~i~~-~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSS--INSIAW-SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSS--EEEEEE-ETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCc--EEEEEE-ecccccceeeCCCCEEEEEC
Confidence 466789999977 999999 89999999999999999997
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=3.1e-06 Score=66.69 Aligned_cols=229 Identities=14% Similarity=0.205 Sum_probs=131.1
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccc----cc--cCCCccEEEEEEccCC--
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH----LI--GKNNIHITGLAYSNTS-- 100 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~i~~~~~~~~~-- 100 (312)
....|+++.|...| .++++|...|.|.+|.-.... -.... -...|.... .+ ..-...|..+.|..++
T Consensus 25 ead~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~-~ceyk---f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 25 EADKITAVEFDETG-LYLATGDKGGRVVLFEREKSY-GCEYK---FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred ccceeeEEEecccc-ceEeecCCCceEEEeeccccc-ccchh---hhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 35579999999998 899999999999999866433 00000 000010000 00 0114567888887765
Q ss_pred -CeEEEecCCcEEEEEcCCCc------------------CCC--CCcCCccc------ccCCCCCceE-ecccCCceeeE
Q 021453 101 -ELLISYNDELVYLFEKNMGL------------------GPS--PLSLSPED------LQKREEPQVY-SGHRNSQTVKG 152 (312)
Q Consensus 101 -~~l~s~~d~~i~iwd~~~~~------------------~~~--~~~~~~~~------~~~~~~~~~~-~~~~~~~~v~~ 152 (312)
++|+++.|.+|++|.+.... ++. ..++.... +....+.+.+ ..|. -.+.+
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~--yhiNS 177 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP--YHINS 177 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce--eEeee
Confidence 38888899999999986541 110 00000000 0000111222 2333 23889
Q ss_pred EEEecCCCCEEEEeccCceEEEEeccCCe---eEEEeecCc-----cceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCC
Q 021453 153 VNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDR-----HVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 153 v~~~s~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~-----~~v~~v~~~p~~~-~l~t~~~d~~i~iwd~~~~~ 223 (312)
++| +.+.+.++++ .|=.|.+|++.-.. .+..++.|. ..|++..|||... .+.-.+..|.|++-|++...
T Consensus 178 iS~-NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 178 ISF-NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eee-cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 998 7777777765 57889999876322 233344443 4688999999764 46666778999999998432
Q ss_pred C-----CC----CCCC----hhh---hhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021453 224 F-----PP----LPDN----AEK---IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 224 ~-----~~----~~~~----~~~---~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
+ .. +.+. -.. .+....++++++++++ ..-.++++||++....+
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDvnm~k~p 314 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDVNMAKNP 314 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEecccccCC
Confidence 1 11 1110 011 1233334455555543 34468999998765443
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.56 E-value=5.4e-07 Score=69.05 Aligned_cols=208 Identities=13% Similarity=0.085 Sum_probs=118.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 110 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~ 110 (312)
.|+.+.++-+ ..|+++..++.+.......+.+...++-...+..+... ..|.++-..-+.+--+.-++++ .||.
T Consensus 38 ~~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~---a~~sep~p~~~~s~~~t~V~~~~~dg~ 112 (319)
T KOG4714|consen 38 KLSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVL---AKNSEIDPNDACTMTDNRVCIGYADGS 112 (319)
T ss_pred EEEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeee---eccCCCCCcccccccCCceEecCCCce
Confidence 3667777764 57888888888887777666554333322222222111 1222222222223334455664 6999
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-----cCceEEEEeccCCeeEEE
Q 021453 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-----DCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-----~dg~v~iwd~~~~~~~~~ 185 (312)
+.+++.+.-. ............ -.+.++ -..++++.++. .-+..+.|+++..+.+..
T Consensus 113 ~~v~s~~~~~---------------~~~~~i~~~~~~--~as~~~-~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 113 LAVFSTDKDL---------------ALMSRIPSIHSG--SASRKI-CRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred EEEEechHHH---------------hhhhhccccccc--ccccce-eecccEEecCCcceEeeccceeeecccccccccc
Confidence 9999986531 111111111111 112222 12344444432 233455666664433222
Q ss_pred eecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021453 186 MVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
-+.-...|.+++-+|..+. ++.|+.||.+.+||.+... ...+..|...+....+-..++..|++.+.||.+-.||-.
T Consensus 175 ~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 175 SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 1112235899999997765 7777799999999998764 233456777776666545588999999999999999855
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.54 E-value=3.8e-05 Score=61.75 Aligned_cols=204 Identities=14% Similarity=0.153 Sum_probs=128.1
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCe-EEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEY-ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~- 107 (312)
+.+...++.+|..+..++.+-.-|+ ..+||..+++.......+ .-.++ .+| -.|+++|++|.+..
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------~gRHF-yGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------PGRHF-YGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------CCCEE-ecC------EEEcCCCCEEEEecc
Confidence 3456788999976678888877665 677999988754322111 11111 344 37999999888762
Q ss_pred -----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc--------------
Q 021453 108 -----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-------------- 168 (312)
Q Consensus 108 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-------------- 168 (312)
.|.|-|||..... +.+..+..+.-. ...+.+ .|+++.|+.+..
T Consensus 71 d~~~g~G~IgVyd~~~~~---------------~ri~E~~s~GIG--PHel~l-~pDG~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 71 DYETGRGVIGVYDAARGY---------------RRIGEFPSHGIG--PHELLL-MPDGETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred ccCCCcEEEEEEECcCCc---------------EEEeEecCCCcC--hhhEEE-cCCCCEEEEEcCCCccCcccCceecC
Confidence 4679999998321 566667666544 667777 899987777642
Q ss_pred ----CceEEEEeccCCeeEEEee----cCccceEEEEEcCCCCeEEEEeCCC-------cEEEccCCCCCCCCCCCChh-
Q 021453 169 ----CGHLFIWKKKGGKLVRLMV----GDRHVVNQLEPHPHIPMFATCGIEK-------TVKLWAPMPTDFPPLPDNAE- 232 (312)
Q Consensus 169 ----dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~~p~~~~l~t~~~d~-------~i~iwd~~~~~~~~~~~~~~- 232 (312)
+..+...|..+|+.+.+.. .|.-.|..+++.++|..++..-..| .|-+++.... +..+.....
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~ 211 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQ 211 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHH
Confidence 3456677778888877643 3667899999999988776665443 2444443331 211111111
Q ss_pred -----hhhhhhccCCCCc-eeEEecCCceEEEEEecccC
Q 021453 233 -----KIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 233 -----~~~~~~~~~~~~~-~l~s~~~d~~i~i~~~~~~~ 265 (312)
.-+.......++. ..+|....+.+.+||..+..
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 1112223445554 44666677899999877663
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=8e-07 Score=75.20 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=122.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
.|+.+|.++.|-.+. +.+++ -||.|.+||.--+++...+.. .++ .+..+.|.++. +-+..++++ +
T Consensus 782 aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~Laq~~d-------apk---~~a~~~ikcl~-nv~~~iliAgc 847 (1034)
T KOG4190|consen 782 AHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLLAQMED-------APK---EGAGGNIKCLE-NVDRHILIAGC 847 (1034)
T ss_pred hccCcccceeeeecc-ceeee--ccCcceeecccccchhHhhhc-------Ccc---cCCCceeEecc-cCcchheeeec
Confidence 389999999998876 55554 589999999877663321000 000 11223343432 112334444 4
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--cCC-ceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021453 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
+ ..+|+++|.+.. .-.-.++.. ..+ ..+.+++. .+.|++++++-..|.|.+.|.++|+.
T Consensus 848 saeSTVKl~DaRsc----------------e~~~E~kVcna~~Pna~~R~iaV-a~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 848 SAESTVKLFDARSC----------------EWTCELKVCNAPGPNALTRAIAV-ADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred cchhhheeeecccc----------------cceeeEEeccCCCCchheeEEEe-ccCcchhhHHhcCCcEEEEecCCCce
Confidence 4 899999999876 222222211 111 23888988 89999999999999999999999998
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE-ccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL-WAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~i-wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
+..++.-......++ .|..+.++....|.++.+ |..-.+.. ........+. .....-+..+++......+.++.
T Consensus 911 INswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa---hflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 911 INSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA---HFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred eccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch---hhhhccCceeEEeccCcEEEEEe
Confidence 887764433333333 466677887778889988 87555432 2211111111 11222345788888888888885
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.53 E-value=1.5e-05 Score=74.90 Aligned_cols=211 Identities=10% Similarity=0.076 Sum_probs=131.0
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEE----EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVY----DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
...|.++.|-++. ..++.+..+|.|.+. +..+..+. ++ ..-...|.+++||||+++|+.
T Consensus 75 ~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~E------------~V----G~vd~GI~a~~WSPD~Ella~ 137 (928)
T PF04762_consen 75 NDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEIE------------IV----GSVDSGILAASWSPDEELLAL 137 (928)
T ss_pred CCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCceeE------------EE----EEEcCcEEEEEECCCcCEEEE
Confidence 4679999999988 688888899999999 54443311 11 233678999999999997776
Q ss_pred e-cCCcEEEEEcCC----C-----------------cCCCCCcCCcccccCC-----CCC------ceEecccCCceeeE
Q 021453 106 Y-NDELVYLFEKNM----G-----------------LGPSPLSLSPEDLQKR-----EEP------QVYSGHRNSQTVKG 152 (312)
Q Consensus 106 ~-~d~~i~iwd~~~----~-----------------~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~v~~ 152 (312)
. .++++.+.+..= . .+....+++...-+.. .+. ..+. .... -..
T Consensus 138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~--~~~ 214 (928)
T PF04762_consen 138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG--RVR 214 (928)
T ss_pred EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC--ceE
Confidence 4 577776654320 0 0111222222111110 000 1111 2222 568
Q ss_pred EEEecCCCCEEEEecc------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCC
Q 021453 153 VNFFGPNDEYVMSGSD------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTD 223 (312)
Q Consensus 153 v~~~s~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~---d~~i~iwd~~~~~ 223 (312)
++| -.||+|+|+.+- -..++||+-. |+....-..-.+--..++|.|.|+++|+.-. ...|.+|.-++.+
T Consensus 215 ISW-RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr 292 (928)
T PF04762_consen 215 ISW-RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR 292 (928)
T ss_pred EEE-CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence 889 899999998764 2579999976 7654443322233346899999999998863 3568888866654
Q ss_pred CCCC--C-CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 224 FPPL--P-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 224 ~~~~--~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
...+ + ......+....|+.++..|+..-.|. +++|...+
T Consensus 293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 3222 1 12222335566888888888766555 99997654
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=3.5e-05 Score=71.31 Aligned_cols=213 Identities=10% Similarity=0.097 Sum_probs=125.8
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 109 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~ 109 (312)
..|.++.|..+. +.++.+...|.|.+-|..+..+. +. ..-...|.+++|+||++.++-. ..+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~e------------iv----g~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELE------------IV----GNVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEccccccee------------ee----eeccCceEEEeecCCCcEEEEEeCCc
Confidence 579999999887 78888888999999988876532 11 2336789999999999977775 455
Q ss_pred cEEEEEc----CCCc-----------------CCCCCcCCcccc--cCCCCCceEe--c-ccCCceeeEEEEecCCCCEE
Q 021453 110 LVYLFEK----NMGL-----------------GPSPLSLSPEDL--QKREEPQVYS--G-HRNSQTVKGVNFFGPNDEYV 163 (312)
Q Consensus 110 ~i~iwd~----~~~~-----------------~~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~~v~~v~~~s~~~~~l 163 (312)
++.+-+- -... +....++..... ...+.....+ + ......-++|+| --+|+++
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW-RgDg~~f 210 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW-RGDGEYF 210 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE-ccCCcEE
Confidence 5544332 1100 000001110000 0000000000 0 000011356888 8899999
Q ss_pred EE-----eccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEccCCCCCCC----CCCCCh
Q 021453 164 MS-----GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDFP----PLPDNA 231 (312)
Q Consensus 164 ~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~---~d~~i~iwd~~~~~~~----~~~~~~ 231 (312)
++ ......|+|||.. |..-..-..-.+-=.+++|-|.|..+++-. .|+.|.+|..++.+.. .++...
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 88 3334899999977 443222111122234799999999988764 5668999997765432 222222
Q ss_pred hhhhhhhccCCCCceeEE---ecCCceEEEEEecc
Q 021453 232 EKIMKANKQGREDHSRIT---LTPDVIMHVLRLQR 263 (312)
Q Consensus 232 ~~~~~~~~~~~~~~~l~s---~~~d~~i~i~~~~~ 263 (312)
.. +....|..++..|+. ......+++|-+.+
T Consensus 290 ~~-ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 290 KE-VEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cc-hheeeecCCCCceeeeecccccceEEEEEecC
Confidence 22 455667777777776 45556699997654
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.47 E-value=9.7e-05 Score=59.49 Aligned_cols=179 Identities=13% Similarity=0.175 Sum_probs=107.9
Q ss_pred eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEE-----eCCCeEEEEEcc-CCeecCCCCCCCCc
Q 021453 2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-----GSDEYARVYDIR-KCHWYSPISSDTPV 75 (312)
Q Consensus 2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~-----~~d~~i~iwd~~-~~~~~~~~~~~~~~ 75 (312)
.+||.++.+....+.. +++..+-| ...|+|+| ++|++. ...|.|-|||.. +.+ .+
T Consensus 31 ~v~D~~~g~~~~~~~a---~~gRHFyG------Hg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~~---------ri 91 (305)
T PF07433_consen 31 LVFDCRTGQLLQRLWA---PPGRHFYG------HGVFSPDG-RLLYTTENDYETGRGVIGVYDAARGYR---------RI 91 (305)
T ss_pred EEEEcCCCceeeEEcC---CCCCEEec------CEEEcCCC-CEEEEeccccCCCcEEEEEEECcCCcE---------EE
Confidence 4788877764443332 33333333 36799999 677665 345899999998 333 12
Q ss_pred ccccccccccCCCccEEEEEEccCCCeEEEecCCc-------------------EEEEEcCCCcCCCCCcCCcccccCCC
Q 021453 76 DTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL-------------------VYLFEKNMGLGPSPLSLSPEDLQKRE 136 (312)
Q Consensus 76 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~ 136 (312)
.+| ..|.-....+.+.|+|+.|+.+..|. +.+.|..++ +
T Consensus 92 ~E~------~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG----------------~ 149 (305)
T PF07433_consen 92 GEF------PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG----------------A 149 (305)
T ss_pred eEe------cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC----------------c
Confidence 222 44455566788999997666654332 222333333 4
Q ss_pred CCceEe----cccCCceeeEEEEecCCCCEEEEeccCce-------EEEEeccCCeeEEEee-------cCccceEEEEE
Q 021453 137 EPQVYS----GHRNSQTVKGVNFFGPNDEYVMSGSDCGH-------LFIWKKKGGKLVRLMV-------GDRHVVNQLEP 198 (312)
Q Consensus 137 ~~~~~~----~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-------v~iwd~~~~~~~~~~~-------~~~~~v~~v~~ 198 (312)
++.... -|... +..+++ ..+|..++..-..|. |.+++. ++.+..+. .-.+.+-+|++
T Consensus 150 ll~q~~Lp~~~~~lS--iRHLa~-~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 150 LLEQVELPPDLHQLS--IRHLAV-DGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred eeeeeecCccccccc--eeeEEe-cCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEE
Confidence 443322 23433 889998 888876665544332 333332 33233332 22357889999
Q ss_pred cCCCCeEEEEe-CCCcEEEccCCCCCCCC
Q 021453 199 HPHIPMFATCG-IEKTVKLWAPMPTDFPP 226 (312)
Q Consensus 199 ~p~~~~l~t~~-~d~~i~iwd~~~~~~~~ 226 (312)
++++..+++.+ .-+.+.+||..++.+..
T Consensus 225 ~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 225 DRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred eCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 99999865555 77899999999988643
No 298
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.46 E-value=3.2e-06 Score=72.68 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=82.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 111 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 111 (312)
....+.++|++ +.+++ ..||...||.....+ ....+.....+|.+.+++.+--....|
T Consensus 34 ~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r--------------------~k~~G~g~~~vw~~~n~yAv~~~~~~I 91 (443)
T PF04053_consen 34 YPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWR--------------------NKAFGSGLSFVWSSRNRYAVLESSSTI 91 (443)
T ss_dssp --SEEEE-TTS-SEEEE-EETTEEEEEETTTTE--------------------EEEEEE-SEEEE-TSSEEEEE-TTS-E
T ss_pred CCeeEEECCCC-CEEEE-EcCCEEEEEEccCCc--------------------ccccCceeEEEEecCccEEEEECCCeE
Confidence 46799999998 67766 567888888854333 111344557889996665544568889
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc
Q 021453 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 191 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 191 (312)
.++.--+. ...+.++... . +..+ | . |..|...+.+ .|.+||+.+++.++.+...
T Consensus 92 ~I~kn~~~----------------~~~k~i~~~~-~--~~~I-f-~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~-- 145 (443)
T PF04053_consen 92 KIYKNFKN----------------EVVKSIKLPF-S--VEKI-F-G--GNLLGVKSSD-FICFYDWETGKLIRRIDVS-- 145 (443)
T ss_dssp EEEETTEE-----------------TT-----SS----EEEE-E----SSSEEEEETT-EEEEE-TTT--EEEEESS---
T ss_pred EEEEcCcc----------------ccceEEcCCc-c--cceE-E-c--CcEEEEECCC-CEEEEEhhHcceeeEEecC--
Confidence 99743222 2323333221 1 4555 3 3 7777776544 8999999999999988733
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 192 ~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
+|..|.|++++.+++..+. ..+.|++....
T Consensus 146 ~vk~V~Ws~~g~~val~t~-~~i~il~~~~~ 175 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTK-DSIYILKYNLE 175 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred CCcEEEEECCCCEEEEEeC-CeEEEEEecch
Confidence 4899999999999988874 47777765443
No 299
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.42 E-value=6.1e-08 Score=83.02 Aligned_cols=202 Identities=13% Similarity=0.188 Sum_probs=128.8
Q ss_pred cceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEec-
Q 021453 31 IRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN- 107 (312)
Q Consensus 31 ~~v~~~~~~p~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~- 107 (312)
..+.|+++.-... .+++.|..+|.|-+-.++...- .......++...+++++|++-. ..||+|-
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagld 123 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNELDTNHLAAGLD 123 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------ccceecccccccccccccccccHHHHHhhhh
Confidence 3567777765432 5788899999999998875531 1223335677889999999854 5777762
Q ss_pred ----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec-ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-e
Q 021453 108 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-K 181 (312)
Q Consensus 108 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~ 181 (312)
|..+.|||+.+... + + +....|.+ .... ..+++| -.+.+.+++|.....++++|++.. .
T Consensus 124 khrnds~~~Iwdi~s~lt-v----P-------ke~~~fs~~~l~g--qns~cw-lrd~klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLT-V----P-------KESPLFSSSTLDG--QNSVCW-LRDTKLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred hhcccCCccceecccccC-C----C-------ccccccccccccC--cccccc-ccCcchhhcccccchhhhhhhhhhhh
Confidence 66799999987621 0 0 11112222 2222 568888 688899999999999999999832 2
Q ss_pred eEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEcc-CCCCC--CCCCCCC----hhhhhhhhccCCCCceeEEecCC
Q 021453 182 LVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWA-PMPTD--FPPLPDN----AEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 182 ~~~~~~~~~~~v~~v~~~p-~~~~l~t~~~d~~i~iwd-~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
....+ .+..+..+...| .+.++++-. ||.|.+|| .+.-+ +..+... .+.+.+.++.......+++.+.|
T Consensus 189 ~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd 265 (783)
T KOG1008|consen 189 SVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD 265 (783)
T ss_pred hhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence 22222 234566778888 777887766 99999999 33322 1111111 22355555444445555555555
Q ss_pred -ceEEEEEecc
Q 021453 254 -VIMHVLRLQR 263 (312)
Q Consensus 254 -~~i~i~~~~~ 263 (312)
++|+.+++..
T Consensus 266 S~tIrlydi~~ 276 (783)
T KOG1008|consen 266 SITIRLYDICV 276 (783)
T ss_pred cceEEEecccc
Confidence 7888888754
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.41 E-value=0.00018 Score=56.42 Aligned_cols=204 Identities=12% Similarity=0.161 Sum_probs=113.4
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEE
Q 021453 36 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLF 114 (312)
Q Consensus 36 ~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iw 114 (312)
++.+++| ++||+ -.|..|.|-..+..- ...+.. | .+.+.....-.-++|+||+.+||.+ +.|+|++|
T Consensus 3 ~~~~~~G-k~lAi-~qd~~iEiRsa~Ddf-------~si~~k-c--qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 3 LALSSDG-KLLAI-LQDQCIEIRSAKDDF-------SSIIGK-C--QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred eeecCCC-cEEEE-EeccEEEEEeccCCc-------hheeEE-E--ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence 4556777 55555 466777665544321 000111 1 1223334456789999999999987 69999999
Q ss_pred EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-----CCEEEEeccCceEEEEeccCC-----eeEE
Q 021453 115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKKGG-----KLVR 184 (312)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-----~~~l~~~~~dg~v~iwd~~~~-----~~~~ 184 (312)
|+..... -.+ .+...+.+.. ...|..+.|..+. ...|++-..+|.++=|-+..+ +...
T Consensus 71 dl~g~~l---f~I--------~p~~~~~~d~-~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h 138 (282)
T PF15492_consen 71 DLMGSEL---FVI--------PPAMSFPGDL-SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH 138 (282)
T ss_pred eccccee---EEc--------CcccccCCcc-ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence 9975310 000 0111111111 1236677663222 235667777888887765322 2222
Q ss_pred Ee--ec-CccceEEEEEcCCCCeEEEEe-CCC----------cEEEccCCCCCCC---------------------CCC-
Q 021453 185 LM--VG-DRHVVNQLEPHPHIPMFATCG-IEK----------TVKLWAPMPTDFP---------------------PLP- 228 (312)
Q Consensus 185 ~~--~~-~~~~v~~v~~~p~~~~l~t~~-~d~----------~i~iwd~~~~~~~---------------------~~~- 228 (312)
.+ .. +...|.++.++|..++|+.|| ... -+.-|.+-.+... .+.
T Consensus 139 sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 139 SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence 22 22 356899999999999876665 221 2455654322110 000
Q ss_pred -------C-ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021453 229 -------D-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 229 -------~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
. ....+ -....++++..|++...+|.+.+|++..-
T Consensus 219 ~~~fs~~~~~~d~i-~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 219 FKFFSRQGQEQDGI-FKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred eeeeeccccCCCce-EEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 0 11222 22335678888999999999999987643
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.41 E-value=4.1e-05 Score=60.97 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=106.9
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 123 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 123 (312)
..+++++.++.|..||..+++.......+.++ ... ....++.+++...++.++.+|..++
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~------------~~~----~~~~~~~v~v~~~~~~l~~~d~~tG---- 96 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPI------------SGA----PVVDGGRVYVGTSDGSLYALDAKTG---- 96 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECSSCG------------GSG----EEEETTEEEEEETTSEEEEEETTTS----
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeeccccc------------cce----eeecccccccccceeeeEecccCCc----
Confidence 46777789999999999999854322111111 111 1223445555567889999998887
Q ss_pred CCcCCcccccCCCCCceE-ecccCC---ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc-------
Q 021453 124 PLSLSPEDLQKREEPQVY-SGHRNS---QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV------- 192 (312)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------- 192 (312)
+..... ...... .......+ .+..++.+..++.|..+|+++|+.+-........
T Consensus 97 ------------~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 97 ------------KVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp ------------CEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred ------------ceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 555552 322110 01222332 4788888888999999999999998777654322
Q ss_pred ---e-EEEEEcCCCCeEEEEeCCCc-EEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021453 193 ---V-NQLEPHPHIPMFATCGIEKT-VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 193 ---v-~~v~~~p~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
+ ..+.+. ++ .+..++.++. +.+ |+.+++.. ........... ...++..++..+.++.+..||+.+++
T Consensus 162 ~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~~--~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 162 FSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYSL--PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECEC--EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccCC--ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 1 223332 34 6666666774 666 98888632 11011111110 22355666666689999999987763
No 302
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.40 E-value=3.9e-05 Score=65.69 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=95.8
Q ss_pred CCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCce---eeEEEEecCCCCEEEEeccCceEEEEe
Q 021453 100 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 100 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
+.+++...++.|+.||..++ +.+..+........ ..+... .+..++.+..++.+..+|
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG----------------~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATG----------------ERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALD 206 (377)
T ss_pred CEEEEECCCCeEEEEEcCCC----------------ceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEE
Confidence 34444456888999998877 44444332221100 011112 124677888899999999
Q ss_pred ccCCeeEEEeecCc--c-----ceEEEEEcC--CCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCcee
Q 021453 177 KKGGKLVRLMVGDR--H-----VVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSR 247 (312)
Q Consensus 177 ~~~~~~~~~~~~~~--~-----~v~~v~~~p--~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (312)
.++|+.+-...... + ....+.-+| .+..++.++.+|.+..||..+++..-...... .......+..+
T Consensus 207 ~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~~~~~~v 282 (377)
T TIGR03300 207 LQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPAVDDNRL 282 (377)
T ss_pred ccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCceEeCCEE
Confidence 99998654432110 0 001111111 34567778889999999998876311100000 01111245677
Q ss_pred EEecCCceEEEEEecccCccceeE-e---------ecCCCccCCCCCCCeEEEeecCCCCC
Q 021453 248 ITLTPDVIMHVLRLQRRQTLAYRE-R---------RYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 248 ~s~~~d~~i~i~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
+.++.++.+..+|..++.. .|.. . ......+...+.++.+++++..+++.
T Consensus 283 yv~~~~G~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGSE-LWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEECCCCeEEEEECCCCcE-EEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence 7788899999998765532 2221 0 01122334445677788888766643
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.39 E-value=0.00025 Score=56.86 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=93.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCC--------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSD--------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 101 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 101 (312)
....+++++.|+| ++.++.... |.|..++.. ++.. .. ...-.....|+|+|+++
T Consensus 85 ~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~---------------~~-~~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 85 FNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVT---------------VV-ADGLGFPNGIAFSPDGK 146 (246)
T ss_dssp TEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEE---------------EE-EEEESSEEEEEEETTSS
T ss_pred cCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEE---------------EE-ecCcccccceEECCcch
Confidence 4578999999999 677765433 456666766 4311 11 11234567999999998
Q ss_pred eEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec-ccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021453 102 LLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 178 (312)
Q Consensus 102 ~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~ 178 (312)
.|..+ ..+.|..|++...... ....+.+.. .......-.+++ +.+|++.++....+.|.+++..
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~g~pDG~~v-D~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGE------------LSNRRVFIDFPGGPGYPDGLAV-DSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCC------------EEEEEEEEE-SSSSCEEEEEEE-BTTS-EEEEEETTTEEEEEETT
T ss_pred heeecccccceeEEEeccccccc------------eeeeeeEEEcCCCCcCCCcceE-cCCCCEEEEEcCCCEEEEECCC
Confidence 65543 4888999998643100 001122211 111123678888 8899988888889999999988
Q ss_pred CCeeEEEeecCccceEEEEE-cCCCCeEEE
Q 021453 179 GGKLVRLMVGDRHVVNQLEP-HPHIPMFAT 207 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~v~~-~p~~~~l~t 207 (312)
|+.+..+......+++++| -|+.+.|..
T Consensus 214 -G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 214 -GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp -SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred -ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 8888888766568999999 466565433
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=2e-05 Score=69.70 Aligned_cols=181 Identities=13% Similarity=0.177 Sum_probs=116.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d 108 (312)
...++|++++. ..|+-|+.+|.|++++.... +... ..|... ..+|+++++|+ |
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~----------------~~~~-~~~s~~------~~~Gey~asCS~D 92 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGN----------------PKTN-FDHSSS------ILEGEYVASCSDD 92 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCc----------------cccc-cccccc------ccCCceEEEecCC
Confidence 45677888865 68999999999999997632 1111 233332 56789999985 9
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-----CCEEEEeccCceEEEEecc---CC
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKK---GG 180 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-----~~~l~~~~~dg~v~iwd~~---~~ 180 (312)
|+|.|-.+.+. +....+.-+ .++.++++ +|+ .+.+++|+..| +.++.-+ ..
T Consensus 93 Gkv~I~sl~~~----------------~~~~~~df~---rpiksial-~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 93 GKVVIGSLFTD----------------DEITQYDFK---RPIKSIAL-HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred CcEEEeeccCC----------------ccceeEecC---CcceeEEe-ccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 99999988776 444444322 34889998 787 56789999988 7777632 22
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhh-----hhhhccCCCCceeEEecCCc
Q 021453 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI-----MKANKQGREDHSRITLTPDV 254 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~l~s~~~d~ 254 (312)
..+ .+....++|.++.| .|+++|-++ |--|++||+..++. ..++.....+ ..-..|..+.++++ +-..
T Consensus 152 ~~v-~l~~~eG~I~~i~W--~g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d 225 (846)
T KOG2066|consen 152 DSV-VLSEGEGPIHSIKW--RGNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGD 225 (846)
T ss_pred cce-eeecCccceEEEEe--cCcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCC
Confidence 222 34455689999999 677887776 55689999887763 2222111111 12222444444443 4455
Q ss_pred eEEEEEecc
Q 021453 255 IMHVLRLQR 263 (312)
Q Consensus 255 ~i~i~~~~~ 263 (312)
+|++..++.
T Consensus 226 ~v~i~~I~~ 234 (846)
T KOG2066|consen 226 SVKICSIKK 234 (846)
T ss_pred eEEEEEEec
Confidence 667777663
No 305
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.38 E-value=0.00012 Score=62.69 Aligned_cols=213 Identities=8% Similarity=-0.014 Sum_probs=119.9
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 123 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 123 (312)
..+++++.++.+..+|..+++.....+.... ... ..+. .++.+++.+.++.++.+|..++
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~------------~~~---~p~v-~~~~v~v~~~~g~l~ald~~tG---- 125 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDER------------LSG---GVGA-DGGLVFVGTEKGEVIALDAEDG---- 125 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCC------------ccc---ceEE-cCCEEEEEcCCCEEEEEECCCC----
Confidence 4788888899999999998875432211110 011 1122 1334455557999999999887
Q ss_pred CCcCCcccccCCCCCceEecccCCceeeE-EEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE-----EEE
Q 021453 124 PLSLSPEDLQKREEPQVYSGHRNSQTVKG-VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-----QLE 197 (312)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-----~v~ 197 (312)
+.+....... . +.+ ... .+..++.++.++.|+.+|.++|+.+-.+......+. ...
T Consensus 126 ------------~~~W~~~~~~-~--~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~ 187 (377)
T TIGR03300 126 ------------KELWRAKLSS-E--VLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPV 187 (377)
T ss_pred ------------cEeeeeccCc-e--eecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCE
Confidence 4443332211 1 211 111 245677788899999999999988766543322111 111
Q ss_pred EcCCCCeEEEEeCCCcEEEccCCCCCCC---CCCCC--hhhhhhh--hccCC--CCceeEEecCCceEEEEEecccCccc
Q 021453 198 PHPHIPMFATCGIEKTVKLWAPMPTDFP---PLPDN--AEKIMKA--NKQGR--EDHSRITLTPDVIMHVLRLQRRQTLA 268 (312)
Q Consensus 198 ~~p~~~~l~t~~~d~~i~iwd~~~~~~~---~~~~~--~~~~~~~--~~~~~--~~~~l~s~~~d~~i~i~~~~~~~~~~ 268 (312)
. .+..++.+..++.+..+|+++++.. .+... ....... ....+ .+..++..+.++.++.+|..++. ..
T Consensus 188 ~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-~~ 264 (377)
T TIGR03300 188 I--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-VL 264 (377)
T ss_pred E--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-EE
Confidence 1 1246677778899999998877531 11100 0000000 00111 34567778888999999987653 33
Q ss_pred eeEe-------ecCCCccCCCCCCCeEEEeecCCCC
Q 021453 269 YRER-------RYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 269 ~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
|... ......+.....++.++.+|..+++
T Consensus 265 W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 265 WKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred EeeccCCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence 3311 1122334444566778888877664
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.38 E-value=1.4e-05 Score=68.47 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=58.5
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~- 107 (312)
.+..|.|++++|+. ..|+.|+.||+|.+||...+-- .+ ....-.++.++|+|+|.++++++
T Consensus 258 L~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t-----------~~------~ka~~~P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 258 LPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVT-----------LL------AKAEFIPTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred cCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCee-----------ee------eeecccceEEEEcCCCcEEEEEcC
Confidence 57789999999998 8999999999999999876531 00 11234467899999999888875
Q ss_pred CCcEEEEEcCCC
Q 021453 108 DELVYLFEKNMG 119 (312)
Q Consensus 108 d~~i~iwd~~~~ 119 (312)
.|.+.+||+.-.
T Consensus 320 qGelQ~FD~ALs 331 (545)
T PF11768_consen 320 QGELQCFDMALS 331 (545)
T ss_pred CceEEEEEeecC
Confidence 799999998643
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=7.1e-06 Score=67.84 Aligned_cols=206 Identities=14% Similarity=0.067 Sum_probs=138.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
.|+..|+.+.-... +++.+++.||.++.|--..-.- .. -..+. ..|...|.+++.+-++.++.+ +
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isG----------vE-fVKhF-raHL~~I~sl~~S~dg~L~~Sv~ 72 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISG----------VE-FVKHF-RAHLGVILSLAVSYDGWLFRSVE 72 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccc----------ee-ehhhh-HHHHHHHHhhhccccceeEeecc
Confidence 38888888776654 6999999999999998653110 01 11222 567888999999999999998 4
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC---CEEEEeccCceEEEEeccCC--
Q 021453 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLFIWKKKGG-- 180 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~---~~l~~~~~dg~v~iwd~~~~-- 180 (312)
. |..++++|+++- ..+..++...-++.+..+ . ++.. ..-++.-.+|.+.++|-...
T Consensus 73 d~Dhs~KvfDvEn~----------------DminmiKL~~lPg~a~wv-~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~ 134 (558)
T KOG0882|consen 73 DPDHSVKVFDVENF----------------DMINMIKLVDLPGFAEWV-T-SKGDKISLIAVSLFKSGKIFVVDGFGDFC 134 (558)
T ss_pred CcccceeEEEeecc----------------chhhhcccccCCCceEEe-c-CCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence 5 899999999875 232222211111112222 1 2221 22334456889999996543
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC------CC-CCCC--------CChhhhhhhhccCCCCc
Q 021453 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT------DF-PPLP--------DNAEKIMKANKQGREDH 245 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~------~~-~~~~--------~~~~~~~~~~~~~~~~~ 245 (312)
+....-+-|..+|..+.+.|.+..+++....|.|.-|..... .+ ..+. ...+.......+++++.
T Consensus 135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~ 214 (558)
T KOG0882|consen 135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA 214 (558)
T ss_pred ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence 333444568999999999999999999999999999998741 01 0111 12233445556777888
Q ss_pred eeEEecCCceEEEEEecccC
Q 021453 246 SRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 246 ~l~s~~~d~~i~i~~~~~~~ 265 (312)
.+.+.++|..+++++++.+.
T Consensus 215 qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 215 QISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccccCcccEEEEEEeccch
Confidence 99999999999999987764
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=3.5e-07 Score=81.39 Aligned_cols=189 Identities=10% Similarity=0.122 Sum_probs=126.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 105 (312)
..|...-+|++|+-.. +.|+.|+..|.|++|++.+|.. .... .+|..+|+-+.=+.+|..+.+
T Consensus 1098 rd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~--------------e~s~-ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSM--------------EESV-NCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred hccccceeeEEeecCC-ceEEeeeccceEEEEEccCccc--------------cccc-cccccccccccccCCcceeeee
Confidence 3577889999999987 8999999999999999999973 2222 789999999999999975544
Q ss_pred ec--CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021453 106 YN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 106 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 183 (312)
++ .-...+|++..-. .....|.+ -.++.| +...++-+.|+......+||+.++.++
T Consensus 1162 ss~S~PlsaLW~~~s~~---------------~~~Hsf~e------d~~vkF-sn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTG---------------GPRHSFDE------DKAVKF-SNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ccccCchHHHhcccccc---------------Cccccccc------cceeeh-hhhHHHHHhcccccceEEEecccCcHH
Confidence 33 3367899986531 34344432 356777 666666667777778899999999887
Q ss_pred EEeec----CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021453 184 RLMVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 184 ~~~~~----~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
.++-. ..-.-+.+.|+|+..+++- || -+||.+..+ +..+.... .....-+++.+..++--+ .|
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EI 1287 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EI 1287 (1516)
T ss_pred HHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hh
Confidence 66421 1122367889999887654 33 479988654 23332111 222222455444444322 47
Q ss_pred EEecccC
Q 021453 259 LRLQRRQ 265 (312)
Q Consensus 259 ~~~~~~~ 265 (312)
||+++..
T Consensus 1288 wD~RTF~ 1294 (1516)
T KOG1832|consen 1288 WDMRTFK 1294 (1516)
T ss_pred hhhHHHH
Confidence 7777653
No 309
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.33 E-value=0.00034 Score=59.07 Aligned_cols=208 Identities=11% Similarity=0.100 Sum_probs=121.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC---------------eEEEEEccCCeecCCCCCCC------Cccccc-----------
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDE---------------YARVYDIRKCHWYSPISSDT------PVDTFC----------- 79 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~---------------~i~iwd~~~~~~~~~~~~~~------~~~~~~----------- 79 (312)
.|.-+.|+|.+ .+|.+=+..+ .+.+||+.++.++....... ++-.|.
T Consensus 73 ~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 73 DVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 48889999998 7888754333 49999999998764433211 111110
Q ss_pred ----cccc---ccC------CCccEEEEEEccCCC--eEEE-e-----cCCcEEEEEcCCCcCCCCCcCCcccccCCCCC
Q 021453 80 ----PRHL---IGK------NNIHITGLAYSNTSE--LLIS-Y-----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP 138 (312)
Q Consensus 80 ----~~~~---~~~------~~~~i~~~~~~~~~~--~l~s-~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 138 (312)
...+ +.. ....|....|+|.+. .||. . .++.+++|.+..+ ..+
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~----------------s~l 215 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN----------------SVL 215 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC----------------Cee
Confidence 0000 000 124566777777643 3332 1 2566778777644 222
Q ss_pred ceEecccCCceeeEEEEecCCCCEEEEec-----------cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEE
Q 021453 139 QVYSGHRNSQTVKGVNFFGPNDEYVMSGS-----------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT 207 (312)
Q Consensus 139 ~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-----------~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t 207 (312)
..-.-.... =..+.| .+.|++|++-- ....++++++.. .-+.....-.++|.+++|.|.++.+++
T Consensus 216 ~tk~lfk~~--~~qLkW-~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~v 291 (561)
T COG5354 216 VTKNLFKVS--GVQLKW-QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAV 291 (561)
T ss_pred eeeeeEeec--ccEEEE-ecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccCCceeE
Confidence 222211211 235666 67777765422 135678888763 333333355789999999999988665
Q ss_pred Ee--CCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC---ceEEEEEecc
Q 021453 208 CG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQR 263 (312)
Q Consensus 208 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~i~~~~~ 263 (312)
.+ .+..+.++|+++.-...++...... ..+++..++++..+.| +.+.+|+...
T Consensus 292 i~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT---~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 292 ISGYMPASVSVFDLRGNLRFYFPEQKRNT---IFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred EecccccceeecccccceEEecCCccccc---ccccCcccEEEEecCCccccceEEeccCC
Confidence 54 7889999999988544444333322 2256666777765555 6777777443
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.30 E-value=8.5e-05 Score=68.91 Aligned_cols=172 Identities=10% Similarity=0.117 Sum_probs=102.6
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCC-------CCC--ccccccccccc---------------
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-------DTP--VDTFCPRHLIG--------------- 85 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~--~~~~~~~~~~~--------------- 85 (312)
..+|.+++|+|++ ..++..+..+++.+-.- +..++..-.. ... +..-...+.+.
T Consensus 109 d~GI~aaswS~De-e~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 109 DNGISAASWSPDE-ELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred cCceEEEeecCCC-cEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence 4589999999999 78888888787766443 1211111000 000 00000000000
Q ss_pred ---C---CCccEEEEEEccCCCeEEEe-----cC-CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEE
Q 021453 86 ---K---NNIHITGLAYSNTSELLISY-----ND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 153 (312)
Q Consensus 86 ---~---~~~~i~~~~~~~~~~~l~s~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 153 (312)
+ -...=++|.|-.||+++|++ .+ ..|++||.+ + .+-.+-.... ..-.++
T Consensus 187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g----------------~Lns~se~~~--~l~~~L 247 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G----------------ALNSTSEPVE--GLQHSL 247 (1265)
T ss_pred ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c----------------hhhcccCccc--ccccce
Confidence 0 11122468999999988872 25 789999987 3 1211111111 124678
Q ss_pred EEecCCCCEEEEec---cCceEEEEecc---CCeeEEEeecCccceEEEEEcCCCCeEEE---EeCCCcEEEccCCCCC
Q 021453 154 NFFGPNDEYVMSGS---DCGHLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFAT---CGIEKTVKLWAPMPTD 223 (312)
Q Consensus 154 ~~~s~~~~~l~~~~---~dg~v~iwd~~---~~~~~~~~~~~~~~v~~v~~~p~~~~l~t---~~~d~~i~iwd~~~~~ 223 (312)
+| -|.|..+++-. .|+.|.+|..+ -++....+......|..++|+.++..||+ ......|++|-+....
T Consensus 248 sW-kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 248 SW-KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ee-cCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 88 89999988753 46678888744 23333333334445899999999999877 4445559999988765
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=4.5e-05 Score=67.47 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=108.6
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--------
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-------- 100 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------- 100 (312)
|+..-.++.|+|.| +||-|+. ..|.+-|..+.+.+.. +..|...|+.+.|.|..
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs---------------ie~h~s~V~~VrWap~~~p~~llS~ 75 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS---------------IELHQSAVTSVRWAPAPSPRDLLSP 75 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc---------------cccCccceeEEEeccCCCchhccCc
Confidence 45556789999988 7777764 6788889888774322 26678889999997631
Q ss_pred ---C-eEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe--cCCC-CEEEEeccCceE
Q 021453 101 ---E-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPND-EYVMSGSDCGHL 172 (312)
Q Consensus 101 ---~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--s~~~-~~l~~~~~dg~v 172 (312)
. +||++. .|.|.+||.... ..+-.+..+..+ +..++|. -++. ..|++-.....|
T Consensus 76 ~~~~lliAsaD~~GrIil~d~~~~----------------s~~~~l~~~~~~--~qdl~W~~~rd~Srd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 76 SSSQLLIASADISGRIILVDFVLA----------------SVINWLSHSNDS--VQDLCWVPARDDSRDVLLAIHGSSTL 137 (1062)
T ss_pred cccceeEEeccccCcEEEEEehhh----------------hhhhhhcCCCcc--hhheeeeeccCcchheeEEecCCcEE
Confidence 2 455664 899999999876 455556656644 7888873 2233 567777778899
Q ss_pred EEEeccCCeeEEEeecCccceEEEEEcCC-CCeEEEEeCCCcEEEccC
Q 021453 173 FIWKKKGGKLVRLMVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~t~~~d~~i~iwd~ 219 (312)
.+|+..+|+.+-..........++.+.|- .+.+..-+..|.+-+-+.
T Consensus 138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 99999999887666544456677888884 445655555666666553
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=4.6e-05 Score=67.61 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=93.5
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-----CCeEEEec-CCcEEEEE
Q 021453 42 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-----SELLISYN-DELVYLFE 115 (312)
Q Consensus 42 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~~-d~~i~iwd 115 (312)
| .++++++.||+|.|-.+.+.+.. +.. .-..++.+++++|+ .+.+++|+ .| +.++.
T Consensus 83 G-ey~asCS~DGkv~I~sl~~~~~~------------~~~----df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 83 G-EYVASCSDDGKVVIGSLFTDDEI------------TQY----DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred C-ceEEEecCCCcEEEeeccCCccc------------eeE----ecCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence 5 89999999999999998877621 111 12567899999998 24667764 55 77765
Q ss_pred cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccce--
Q 021453 116 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-- 193 (312)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-- 193 (312)
-+-- ........+...++|.++.| .|+++|-++.+| |++||+.+.+.+..++.....+
T Consensus 145 r~wl----------------gnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~ 204 (846)
T KOG2066|consen 145 RNWL----------------GNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP 204 (846)
T ss_pred hhhh----------------cCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc
Confidence 4321 11111233444456999999 488888877655 7899999888887765332322
Q ss_pred ----EEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 194 ----NQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 194 ----~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
..+.|.++.+.++- ..-+|+|..++.
T Consensus 205 e~fpphl~W~~~~~LVIG--W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 205 ELFPPHLHWQDEDRLVIG--WGDSVKICSIKK 234 (846)
T ss_pred ccCCCceEecCCCeEEEe--cCCeEEEEEEec
Confidence 35778777655543 346888888873
No 313
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=2.2e-05 Score=66.75 Aligned_cols=140 Identities=9% Similarity=0.110 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec---C-
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---D- 108 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---d- 108 (312)
=+-+.|||.| .+|++-..-| |.+|--.+... ++. -.|. .|.-+.|||..++|++.+ .
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r---------~~R-------F~Hp-~Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGESFDR---------IQR-------FYHP-GVQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCccHHH---------HHh-------ccCC-CceeeecCCccceEEEecCCccc
Confidence 4568999999 8999887755 77887655431 111 2343 478899999999999842 1
Q ss_pred --------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceee-EEEEecCCCCEEEEeccCceEEEEeccC
Q 021453 109 --------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 109 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~s~~~~~l~~~~~dg~v~iwd~~~ 179 (312)
..++|||+.+| ...+.|.....+..+. -..| |.+++|+|.-.. ..|.||+..+
T Consensus 274 ~~~~d~e~~~l~IWDI~tG----------------~lkrsF~~~~~~~~~WP~frW-S~DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATG----------------LLKRSFPVIKSPYLKWPIFRW-SHDDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred cCcccCCCceEEEEEcccc----------------chhcceeccCCCccccceEEe-ccCCceeEEecc-ceEEEEecCc
Confidence 46999999998 6777777643332232 3456 889999987665 5788998765
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021453 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~ 209 (312)
..++..-...-..|....|+|.+..||--.
T Consensus 336 f~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 336 FMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred eeeecccccCCccccCcccCCCcceEEEEc
Confidence 443322222345788899999988776543
No 314
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=6.7e-05 Score=66.42 Aligned_cols=201 Identities=10% Similarity=0.095 Sum_probs=128.2
Q ss_pred CCccceEEEEEcCCC-----------CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE
Q 021453 28 MNSIRLNAIVIDPRN-----------PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY 96 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~-----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 96 (312)
.|...|+.+.|.|.. .-+||++...|.|.+||...+.. ...+..|..++..++|
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~---------------~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV---------------INWLSHSNDSVQDLCW 117 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---------------hhhhcCCCcchhheee
Confidence 378899999998732 13677888899999999987752 2222667788888988
Q ss_pred ccCC----CeEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCc
Q 021453 97 SNTS----ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCG 170 (312)
Q Consensus 97 ~~~~----~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg 170 (312)
-+.. .+|++ .....+.+|+..+| .....+.... ....++.+ +| +.+.+..-+..|
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG----------------~k~Wk~~ys~--~iLs~f~~-DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDTG----------------EKFWKYDYSH--EILSCFRV-DPFDSRHFCVLGSKG 178 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccCC----------------ceeeccccCC--cceeeeee-CCCCcceEEEEccCc
Confidence 7643 24444 57899999999888 4544443333 23666777 44 556666667778
Q ss_pred eEEEEecc-------CCeeEEEeecCcc-----------------c--------eEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021453 171 HLFIWKKK-------GGKLVRLMVGDRH-----------------V--------VNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 171 ~v~iwd~~-------~~~~~~~~~~~~~-----------------~--------v~~v~~~p~~~~l~t~~~d~~i~iwd 218 (312)
.+.+-+.- .++..+.-..|.. + ...++|+|.-+.++.......+.++|
T Consensus 179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~d 258 (1062)
T KOG1912|consen 179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFD 258 (1062)
T ss_pred eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEc
Confidence 88777642 1233322222221 0 11356788877666666678999999
Q ss_pred CCCCCC-CCCCCChhhhhhhhccCC--CCceeEEecCCceEEEEEecc
Q 021453 219 PMPTDF-PPLPDNAEKIMKANKQGR--EDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 219 ~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~i~~~~~ 263 (312)
++-... ..++-... -.....+.+ ....|+.+-.||.+.+|.-+.
T Consensus 259 le~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 259 LEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred chhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 986553 22221122 112233333 466889999999999997543
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.27 E-value=2.6e-05 Score=70.04 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-----
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----- 107 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----- 107 (312)
|+-|+.+ + +.+.+|...|+|.+-|..+.+. .+.+..|++.|..+ .-.|+.|++++
T Consensus 180 v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~---------------iht~~aHs~siSDf--Dv~GNlLitCG~S~R~ 239 (1118)
T KOG1275|consen 180 VTIMRYN--N-RNLFCGDTRGTVFLRDPNSFET---------------IHTFDAHSGSISDF--DVQGNLLITCGYSMRR 239 (1118)
T ss_pred eEEEEec--C-cEEEeecccceEEeecCCcCce---------------eeeeeccccceeee--eccCCeEEEeeccccc
Confidence 5555443 3 7899999999999999998762 22238899888765 45677777742
Q ss_pred -----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEec---cC
Q 021453 108 -----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK---KG 179 (312)
Q Consensus 108 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~---~~ 179 (312)
|.-|+|||+++. +.+..+.-+..+ .-+.|++.-...+++++..|...+-|. .+
T Consensus 240 ~~l~~D~FvkVYDLRmm----------------ral~PI~~~~~P---~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 240 YNLAMDPFVKVYDLRMM----------------RALSPIQFPYGP---QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ccccccchhhhhhhhhh----------------hccCCcccccCc---hhhhhcccccceEEEEecccceeeccccccCC
Confidence 223789999876 343333333332 335553333567888888999999883 32
Q ss_pred C-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021453 180 G-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 180 ~-~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
. .-+..+......+..+.++++++.+|.+..+|.|.+|.-.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 2 1122222233458999999999999999999999999843
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.26 E-value=5.5e-06 Score=70.98 Aligned_cols=72 Identities=13% Similarity=0.260 Sum_probs=60.3
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
.+.++++ +|+...|+.|+.||.|.+||...+.. .+....-.++.++|||+|.++++|+..|.+.+||+.-..
T Consensus 261 ~v~~ca~-sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 261 QVICCAR-SPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cceEEec-CcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 3889998 99999999999999999999876532 232344567899999999999999999999999976543
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.20 E-value=2.3e-05 Score=70.45 Aligned_cols=177 Identities=10% Similarity=0.050 Sum_probs=123.3
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 122 (312)
..++-|+-...+..+|+++.+.... . .-....|+-+. .+++++.+| ..|+|.+-|.++.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~------------~---~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~--- 207 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRT------------T---NVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF--- 207 (1118)
T ss_pred cceeecchhhheeeeecccceeeee------------e---eccCCceEEEE--ecCcEEEeecccceEEeecCCcC---
Confidence 4566666666777788887752211 0 11122355544 356788887 5999999999887
Q ss_pred CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---------CceEEEEeccCCeeEEEeecCccce
Q 021453 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRHVV 193 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v 193 (312)
+.+.++..|.+. +.++ +..|+.|++++. |..|+|||++..+.+..+.-+.++
T Consensus 208 -------------~~iht~~aHs~s--iSDf---Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P- 268 (1118)
T KOG1275|consen 208 -------------ETIHTFDAHSGS--ISDF---DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP- 268 (1118)
T ss_pred -------------ceeeeeeccccc--eeee---eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-
Confidence 788999999976 7664 567999998875 667899999988877766655544
Q ss_pred EEEEEcCCCCe-EEEEeCCCcEEEccCC---CCCCCC--CCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 194 NQLEPHPHIPM-FATCGIEKTVKLWAPM---PTDFPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 194 ~~v~~~p~~~~-l~t~~~d~~i~iwd~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.-+.|+|.-.. ++.++..|...+-|.. ...... +...... +.....++++..++-+..++.|.+|.
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~-i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSG-ISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCc-ceeEEecCCCceEEEecccCcEeeec
Confidence 56889997654 7888888999999843 222211 1112222 33444677888999999999999997
No 318
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.11 E-value=0.00022 Score=56.73 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=83.6
Q ss_pred CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCccc
Q 021453 52 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED 131 (312)
Q Consensus 52 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 131 (312)
+|.|..||..+++.+.... + ..............++.+++...++.|+.||..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~------------~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG------------ 56 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD------------L-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG------------ 56 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE------------C-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS------------
T ss_pred CCEEEEEECCCCCEEEEEE------------C-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC------------
Confidence 6888999998887432211 1 10012222223333444555557999999999887
Q ss_pred ccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe-ecCc---cceEEEEEcCCCCeEEE
Q 021453 132 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDR---HVVNQLEPHPHIPMFAT 207 (312)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~---~~v~~v~~~p~~~~l~t 207 (312)
+.+..+...... ..... ..+..+++++.++.|..+|..+|+.+-.. .... ...........+..++.
T Consensus 57 ----~~~W~~~~~~~~--~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (238)
T PF13360_consen 57 ----KVLWRFDLPGPI--SGAPV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV 127 (238)
T ss_dssp ----EEEEEEECSSCG--GSGEE---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE
T ss_pred ----CEEEEeeccccc--cceee---ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEE
Confidence 566555542211 11111 23555666668889999999999988774 3221 11122233334778888
Q ss_pred EeCCCcEEEccCCCCCC
Q 021453 208 CGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 208 ~~~d~~i~iwd~~~~~~ 224 (312)
+..++.|..+|++++++
T Consensus 128 ~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKL 144 (238)
T ss_dssp EETCSEEEEEETTTTEE
T ss_pred EeccCcEEEEecCCCcE
Confidence 88899999999998864
No 319
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.08 E-value=1.8e-05 Score=42.41 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=34.7
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021453 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd 218 (312)
++++..+..|...|.++.|+|.+..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778889999999999999999999999999996
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00067 Score=61.00 Aligned_cols=159 Identities=11% Similarity=0.136 Sum_probs=97.8
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE-ecC-C----
Q 021453 37 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YND-E---- 109 (312)
Q Consensus 37 ~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d-~---- 109 (312)
+|++.+ ..++.|+.+|.|.+++-.-.- ++.| ..+...+...-+.-++ .+|++ +.| +
T Consensus 30 c~~s~~-~~vvigt~~G~V~~Ln~s~~~----------~~~f------qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ 92 (933)
T KOG2114|consen 30 CCSSST-GSVVIGTADGRVVILNSSFQL----------IRGF------QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV 92 (933)
T ss_pred EEcCCC-ceEEEeeccccEEEeccccee----------eehh------eecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence 466766 699999999999888754221 1111 3344443333344444 47776 543 3
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCC---ceEe--cccCCceeeEEEEecCCCCEEEEeccCceEEEEecc---C-C
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---G-G 180 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---~-~ 180 (312)
.+++|+++...+.. ...++ +.+. ...++.++.+++. +.+-+.+++|-.+|.|..+.-+ . +
T Consensus 93 llkiw~lek~~~n~----------sP~c~~~~ri~~~~np~~~~p~s~l~V-s~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNN----------SPQCLYEHRIFTIKNPTNPSPASSLAV-SEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EEEEecccccCCCC----------CcceeeeeeeeccCCCCCCCcceEEEE-EccccEEEEEecCcEEEEEcCcchhccc
Confidence 58999997642111 01222 2222 1222345888888 7889999999999999988521 1 2
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
....-......+|+.+++..++..++.+..-..|.+|.+.+..
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 2111222345799999999888874444445789999998665
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=8.5e-05 Score=61.70 Aligned_cols=164 Identities=12% Similarity=0.111 Sum_probs=111.3
Q ss_pred CccceEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEE
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s 105 (312)
|-..|.+++.+-++ .++++++. |..++++|+.+-.++..+.... -.+.+. +-.++... .++.
T Consensus 52 HL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-------------lPg~a~-wv~skGd~~s~IAV 116 (558)
T KOG0882|consen 52 HLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVD-------------LPGFAE-WVTSKGDKISLIAV 116 (558)
T ss_pred HHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhccccc-------------CCCceE-EecCCCCeeeeEEe
Confidence 67778888888888 78899777 9999999999877543322110 111111 11222221 4444
Q ss_pred e--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC----
Q 021453 106 Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---- 179 (312)
Q Consensus 106 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---- 179 (312)
+ .++.+.++|-..... +....-.-|..+ |..+.+ .+.+..+++....|.|.-|....
T Consensus 117 s~~~sg~i~VvD~~~d~~--------------q~~~fkklH~sP--V~~i~y-~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFC--------------QDGYFKKLHFSP--VKKIRY-NQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ecccCCCcEEECCcCCcC--------------ccceecccccCc--eEEEEe-eccccceeeccccceeEeecCCCcccC
Confidence 4 489999999876410 122222345544 999998 89999999999999999998762
Q ss_pred --CeeEEEee---------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 180 --GKLVRLMV---------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 180 --~~~~~~~~---------~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
.+....++ -......++.|+|++..+.+-+.|..|++++..++++
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 11111111 1234568899999999999999999999999988764
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00048 Score=60.54 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=83.2
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
|+..|.=-+++..+ .+++.|++-|.+++|+-..+++..... .+....+..+..+++..++|.+ .
T Consensus 32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~--------------~~~~~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKN--------------EGATGITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhhcccc--------------cCccceEEEEEecchhHhhhhhcC
Confidence 44555555566666 799999999999999988776432110 2234456667778887777776 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe---cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~ 179 (312)
.|.|.++.+.....+ .....-. .|.. .|++++| ++++..+++|...|+|..-.+.+
T Consensus 97 ~g~V~v~ql~~~~p~-------------~~~~~t~~d~~~~~--rVTal~W-s~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPR-------------DLDYVTPCDKSHKC--RVTALEW-SKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEeehhhccCCC-------------cceeeccccccCCc--eEEEEEe-cccccEEeecCCCceEEEEEech
Confidence 889999988764211 1111111 1343 4999999 99999999999999998877665
No 323
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.99 E-value=0.0004 Score=58.68 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=85.8
Q ss_pred CCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021453 87 NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 166 (312)
Q Consensus 87 ~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~ 166 (312)
..-++..+.|||.|.+|++..-..|.+|.-... ..+..+. |. .|..+.| +|.++||.+=
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~----------------~~l~~~~-~~---~V~~~~f-SP~~kYL~tw 89 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK----------------AKLVRFR-HP---DVKYLDF-SPNEKYLVTW 89 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccch----------------hheeeee-cC---Cceeccc-Ccccceeeee
Confidence 456788999999999999998888999998765 3333443 22 2888998 9999999987
Q ss_pred ccCc---------------eEEEEeccCCeeEEEeecCccc--eE-EEEEcCCCCeEEEEeCCCcEEEccC
Q 021453 167 SDCG---------------HLFIWKKKGGKLVRLMVGDRHV--VN-QLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 167 ~~dg---------------~v~iwd~~~~~~~~~~~~~~~~--v~-~v~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
+..+ .+.+||..++..+..+.....+ .. -+.|+-+.+++|-. ....+.|+++
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 6544 4999999999999988766554 44 67888888886544 3457899997
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.93 E-value=2.8e-06 Score=73.25 Aligned_cols=163 Identities=17% Similarity=0.249 Sum_probs=104.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEe----CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021453 27 PMNSIRLNAIVIDPRNPNYFAVGG----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 102 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 102 (312)
|+|..+.++++|++-..+.||+|- .|..+.|||+.++--. |.. ...+..+......+++|-.+.++
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv-------Pke---~~~fs~~~l~gqns~cwlrd~kl 168 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV-------PKE---SPLFSSSTLDGQNSVCWLRDTKL 168 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCC-------Ccc---ccccccccccCccccccccCcch
Confidence 678889999999997657888873 4678999999877310 110 01110112334458888877777
Q ss_pred EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEe-ccC
Q 021453 103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWK-KKG 179 (312)
Q Consensus 103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd-~~~ 179 (312)
+.+| ....+.++|++.. +.+...-.. +.+..+.. +| .++|+++-. ||.|.+|| .+.
T Consensus 169 vlaGm~sr~~~ifdlRqs-----------------~~~~~svnT--k~vqG~tV-dp~~~nY~cs~~-dg~iAiwD~~rn 227 (783)
T KOG1008|consen 169 VLAGMTSRSVHIFDLRQS-----------------LDSVSSVNT--KYVQGITV-DPFSPNYFCSNS-DGDIAIWDTYRN 227 (783)
T ss_pred hhcccccchhhhhhhhhh-----------------hhhhhhhhh--hhccccee-cCCCCCceeccc-cCceeeccchhh
Confidence 7777 4789999999853 111111122 23566666 66 778877655 99999999 332
Q ss_pred C-eeEEEeecCc----cceEEEEEcCCCCe-EEEEeC-CCcEEEccCC
Q 021453 180 G-KLVRLMVGDR----HVVNQLEPHPHIPM-FATCGI-EKTVKLWAPM 220 (312)
Q Consensus 180 ~-~~~~~~~~~~----~~v~~v~~~p~~~~-l~t~~~-d~~i~iwd~~ 220 (312)
- .++..+...+ ..+..++|+|...- +++... .++|+++++.
T Consensus 228 ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 228 IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 2 2233222111 24889999998754 666664 4789999976
No 325
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.91 E-value=0.0034 Score=52.50 Aligned_cols=184 Identities=10% Similarity=0.073 Sum_probs=106.2
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC---CCcEEEEEeC---------C-CeEEEEEccCCeecC
Q 021453 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR---NPNYFAVGGS---------D-EYARVYDIRKCHWYS 67 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~~l~~~~~---------d-~~i~iwd~~~~~~~~ 67 (312)
|++.|..+......+...... +...+..+.+..+ ...+|++|+. . |.|.++++.....
T Consensus 4 i~l~d~~~~~~~~~~~l~~~E-------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-- 74 (321)
T PF03178_consen 4 IRLVDPTTFEVLDSFELEPNE-------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-- 74 (321)
T ss_dssp EEEEETTTSSEEEEEEEETTE-------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred EEEEeCCCCeEEEEEECCCCc-------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc--
Confidence 466676665544344443322 2223334444432 1367887753 2 8999999987400
Q ss_pred CCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC
Q 021453 68 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 147 (312)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (312)
....+ ..... ....++|++++-- +..|+.+..+.|++|++... +.+.....+...
T Consensus 75 ---~~~~l---~~i~~-~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~----------------~~l~~~~~~~~~ 129 (321)
T PF03178_consen 75 ---NNFKL---KLIHS-TEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNS----------------KTLLKKAFYDSP 129 (321)
T ss_dssp ------EE---EEEEE-EEESS-EEEEEEE--TTEEEEEETTEEEEEEEETT----------------SSEEEEEEE-BS
T ss_pred ---cceEE---EEEEE-EeecCcceEhhhh--CCEEEEeecCEEEEEEccCc----------------ccchhhheecce
Confidence 00001 11111 2336778888766 33477777899999999876 312222222222
Q ss_pred ceeeEEEEecCCCCEEEEeccCceEEEEeccC-CeeEEEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~--~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
..+.++.. .+++++.|.....+.++..+. ++.+..+. .....++++.|-++++.++.+..+|.|.++....
T Consensus 130 ~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 130 FYITSLSV---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEec---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 24677765 367999999888888875543 33333332 2345688899987777899999999999998763
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.91 E-value=0.0047 Score=48.19 Aligned_cols=147 Identities=10% Similarity=0.026 Sum_probs=93.0
Q ss_pred CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCC
Q 021453 40 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNM 118 (312)
Q Consensus 40 p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~ 118 (312)
++...+++.|+..+.+..-|..++++..+... ...|.+-+.- -|.+++. +-.|.+++.+..+
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~il----------------g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t 82 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL----------------GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT 82 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhh----------------CceeeeeeEE-ECCEEEEEEccCcEEEEEecc
Confidence 44447888999999999999999886432110 1222222221 3455555 4699999999998
Q ss_pred CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE
Q 021453 119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 198 (312)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~ 198 (312)
+ .+...+.....- .+... . ++++..+..|+.|+..+..|.++..++...+-..+...+-+.
T Consensus 83 G----------------s~~w~f~~~~~v-k~~a~-~-d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i 143 (354)
T KOG4649|consen 83 G----------------SQIWNFVILETV-KVRAQ-C-DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVI 143 (354)
T ss_pred h----------------hheeeeeehhhh-ccceE-E-cCCCceEEEecCCCcEEEecccccceEEecccCCceecccee
Confidence 8 566666543321 12222 2 789999999999999999999998888877644444444556
Q ss_pred cCCCCeEEEEeCCCcEEEccCCCC
Q 021453 199 HPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 199 ~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
.|-...|..+...|.+---+.+..
T Consensus 144 ~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 144 APGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cCCCceEEEEeccceEEEEccCCC
Confidence 663333444444455544444443
No 327
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00081 Score=57.91 Aligned_cols=157 Identities=10% Similarity=0.016 Sum_probs=92.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
...+..-+|+|++..+....-.. ..+.++++.+++-. .+.. ....-...+|+|+|+.|+-+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------~i~~---------~~g~~~~P~fspDG~~l~f~ 255 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------VILN---------FNGNNGAPAFSPDGSKLAFS 255 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------eeec---------cCCccCCccCCCCCCEEEEE
Confidence 34567788999985444443222 35888999887621 1111 12233456899999866653
Q ss_pred --cCCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccC
Q 021453 107 --NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKG 179 (312)
Q Consensus 107 --~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~ 179 (312)
.|+. |+++|+.++ .. ..+...... -..-.| +|+|++++-.+. .| .|.+.++..
T Consensus 256 ~~rdg~~~iy~~dl~~~----------------~~-~~Lt~~~gi--~~~Ps~-spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 256 SSRDGSPDIYLMDLDGK----------------NL-PRLTNGFGI--NTSPSW-SPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred ECCCCCccEEEEcCCCC----------------cc-eecccCCcc--ccCccC-CCCCCEEEEEeCCCCCcceEEECCCC
Confidence 3654 677787765 22 223322221 224556 999999876554 44 466677775
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeC-CCc--EEEccCCCCC
Q 021453 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKT--VKLWAPMPTD 223 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~-d~~--i~iwd~~~~~ 223 (312)
++. ..+......-..-.|+|+|++++..+. +|. |.+.++.++.
T Consensus 316 ~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 316 SQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred Cce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 554 333323222236789999999877764 344 6666665544
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.84 E-value=0.0057 Score=48.58 Aligned_cols=167 Identities=13% Similarity=0.142 Sum_probs=93.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
...+..++|+|+...++++....+.|..++.. ++++..+ .+ .+ ....-.|++..++.++++. .+
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i------------~l-~g-~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI------------PL-DG-FGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE------------E--SS--SSEEEEEE-STTEEEEEETTT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE------------eC-CC-CCCceeEEEECCCEEEEEEcCC
Confidence 44699999999875788888899999888875 5532111 11 22 3456788888888887777 49
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe--cc-cCCceeeEEEEecCCCCEEEEeccCceEEEEeccC---Cee
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKL 182 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---~~~ 182 (312)
+.+.++++...... ++. ...+.+. .. ....-+-.++| ++.++.|+.+-+..-..+|.++. ...
T Consensus 86 ~~L~~~~~~~~~~~----~~~------~~~~~~~l~~~~~~N~G~EGla~-D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 86 QRLYIFTIDDDTTS----LDR------ADVQKISLGFPNKGNKGFEGLAY-DPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TEEEEEEE----TT------E------EEEEEEE---S---SS--EEEEE-ETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CcEEEEEEeccccc----cch------hhceEEecccccCCCcceEEEEE-cCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 99999998543100 000 0111121 11 11123889999 88888888887776677776653 222
Q ss_pred EEEe--e------cCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCC
Q 021453 183 VRLM--V------GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 183 ~~~~--~------~~~~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~ 222 (312)
+... . .....+.+++++|.... ++.......|-.+|..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~ 203 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR 203 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence 2111 1 12345788999997655 566667788888985554
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00041 Score=59.72 Aligned_cols=140 Identities=13% Similarity=0.128 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEE--EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--cC
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEYARVY--DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--ND 108 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d 108 (312)
-..-+|+|+|..++++...||...|| |+.+++.. . + ..-.+.-..-.|+|+|+.++-. ..
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~--------------~-L-t~~~gi~~~Ps~spdG~~ivf~Sdr~ 303 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP--------------R-L-TNGFGINTSPSWSPDGSKIVFTSDRG 303 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce--------------e-c-ccCCccccCccCCCCCCEEEEEeCCC
Confidence 34678999997777777788775555 55555411 1 1 1112222256899999966653 24
Q ss_pred C--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cce--EEEEeccCCeeE
Q 021453 109 E--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGH--LFIWKKKGGKLV 183 (312)
Q Consensus 109 ~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~--v~iwd~~~~~~~ 183 (312)
| .|++++.+.. .. ..+...... -..-.| +|+|++|+..+. +|. |.+.|+.++..+
T Consensus 304 G~p~I~~~~~~g~----------------~~-~riT~~~~~--~~~p~~-SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~ 363 (425)
T COG0823 304 GRPQIYLYDLEGS----------------QV-TRLTFSGGG--NSNPVW-SPDGDKIVFESSSGGQWDIDKNDLASGGKI 363 (425)
T ss_pred CCcceEEECCCCC----------------ce-eEeeccCCC--CcCccC-CCCCCEEEEEeccCCceeeEEeccCCCCcE
Confidence 4 4666677665 22 333333222 114556 999999887664 344 667777665544
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEe
Q 021453 184 RLMVGDRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 184 ~~~~~~~~~v~~v~~~p~~~~l~t~~ 209 (312)
+.+. +........|.|+++.+...+
T Consensus 364 ~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 364 RILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEcc-ccccCCCCCcCCCCceEEEec
Confidence 4433 333444567888888765554
No 330
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.77 E-value=0.0024 Score=43.17 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=64.5
Q ss_pred eEEEEEc---CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021453 33 LNAIVID---PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 33 v~~~~~~---p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
|++|++. -+|.+.|++|+.|..||+|+-..-- .. ......|++++-...+++..+..+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~----------------~E--i~e~~~v~~L~~~~~~~F~Y~l~NG 63 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV----------------AE--ITETDKVTSLCSLGGGRFAYALANG 63 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE----------------EE--EecccceEEEEEcCCCEEEEEecCC
Confidence 4555554 4566899999999999999865321 11 1124667888777765555555899
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC---CEEEEeccCceEE
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLF 173 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~---~~l~~~~~dg~v~ 173 (312)
+|-+|+-.. .+...+... .+.++++++.++ ..|++|-.+|.|-
T Consensus 64 TVGvY~~~~------------------RlWRiKSK~---~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 64 TVGVYDRSQ------------------RLWRIKSKN---QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEeCcc------------------eeeeeccCC---CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999998643 222222222 166666645543 3578888888764
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.77 E-value=0.0017 Score=55.39 Aligned_cols=213 Identities=12% Similarity=0.186 Sum_probs=111.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC------CCC----------------------CCCCccccccccc
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS------PIS----------------------SDTPVDTFCPRHL 83 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~----------------------~~~~~~~~~~~~~ 83 (312)
.|+.+.|.++. .-|++|...|.|.+|.....+-.. ..+ .+.....|.+..+
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58999999987 689999999999999886543221 000 0011123445555
Q ss_pred ccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE------ecccCCceeeEEEEe
Q 021453 84 IGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY------SGHRNSQTVKGVNFF 156 (312)
Q Consensus 84 ~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~~~ 156 (312)
+....++|++++.|.-| ++|. ..+|.+.|.|++.. ..+..- ..+.....++++.|.
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGP----------------avI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGP----------------AVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTT----------------EEEEEEEGGG--T-SS----EEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCC----------------eEEeeccccccccccccccCeeEEEEE
Confidence 56668999999997555 5555 47999999999765 222111 111122347777772
Q ss_pred ----cCCC---CEEEEeccCceEEEEeccC---Cee----EEEeecCccceEEEE-EcCC-C------------------
Q 021453 157 ----GPND---EYVMSGSDCGHLFIWKKKG---GKL----VRLMVGDRHVVNQLE-PHPH-I------------------ 202 (312)
Q Consensus 157 ----s~~~---~~l~~~~~dg~v~iwd~~~---~~~----~~~~~~~~~~v~~v~-~~p~-~------------------ 202 (312)
..++ -.|++|+..|.+.+|.+.. +.. ......+.++|..+. ++.+ |
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 2222 4788999999999998642 211 111123445555544 3211 1
Q ss_pred -CeEEEEeCCCcEEEccCCCCCC--CCCCCChhhhhhhhcc-----CCCCceeEEecCCceEEEEEeccc
Q 021453 203 -PMFATCGIEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQ-----GREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 203 -~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+.++....+..+|++.+.+.+. +.+. ... ......+ ...+..|+....+|.++++.+..-
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~-~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFD-DPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-S-S-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeec-ccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 2244444588999999887653 2221 111 1111111 224567889999999999987654
No 332
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.76 E-value=0.0025 Score=54.91 Aligned_cols=211 Identities=7% Similarity=-0.016 Sum_probs=113.3
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 123 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 123 (312)
..++.++.++.+..+|..+++.....+...++ ...+ .. .++.+++...++.++-+|..++
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----------~ssP----~v-~~~~v~v~~~~g~l~ald~~tG---- 180 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-----------LSRP----VV-SDGLVLVHTSNGMLQALNESDG---- 180 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCce-----------ecCC----EE-ECCEEEEECCCCEEEEEEccCC----
Confidence 36677788999999999999854332211100 0111 11 1445555557899999999887
Q ss_pred CCcCCcccccCCCCCceEecccCCce---eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc-------ce
Q 021453 124 PLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-------VV 193 (312)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~v 193 (312)
+.+..+........ ..+... .+..++.++.+|.+..+|..+|+.+-....... ..
T Consensus 181 ------------~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 181 ------------AVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred ------------CEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 44444432211000 001111 123566778889999999998876544321100 01
Q ss_pred EEEEEcC--CCCeEEEEeCCCcEEEccCCCCCCC---CCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccc
Q 021453 194 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFP---PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 268 (312)
Q Consensus 194 ~~v~~~p--~~~~l~t~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~ 268 (312)
..+.-+| .+..++.++.++.+..+|+.+++.. .+. ... . ....+..++.++.++.+..++..++. ..
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~---~---~~~~~~~vy~~~~~g~l~ald~~tG~-~~ 317 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG-SVN---D---FAVDGGRIYLVDQNDRVYALDTRGGV-EL 317 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC-Ccc---C---cEEECCEEEEEcCCCeEEEEECCCCc-EE
Confidence 1111222 2455666777899999998887631 111 000 0 11234566677778888888776542 22
Q ss_pred eeEee----------cCCCccCCCCCCCeEEEeecCCCC
Q 021453 269 YRERR----------YNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 269 ~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
|.... .....+...+.+|.++++|..+|.
T Consensus 318 W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 318 WSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred EcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 32110 012233334566777888776664
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00028 Score=61.98 Aligned_cols=117 Identities=14% Similarity=0.052 Sum_probs=83.9
Q ss_pred CCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021453 87 NNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 87 ~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
+...+.--++...+++++.| +-|.+++|+...+. .......+.. ..+..++. +++..++|.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~---------------~~~~~~~~~~--~~~~~~~v-s~~e~lvAa 93 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE---------------MRKLKNEGAT--GITCVRSV-SSVEYLVAA 93 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchh---------------hhcccccCcc--ceEEEEEe-cchhHhhhh
Confidence 44556666777788888887 69999999988761 1222222222 22344444 888999999
Q ss_pred eccCceEEEEeccCCeeE-----EEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 166 GSDCGHLFIWKKKGGKLV-----RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 166 ~~~dg~v~iwd~~~~~~~-----~~~-~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
|+..|.|.++-+....+- ... +.|...|++++|++++..+.+|...|+|.+-.+..
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 999999999987754331 111 24678999999999999999999999998876654
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.72 E-value=0.0075 Score=52.00 Aligned_cols=225 Identities=12% Similarity=0.095 Sum_probs=118.3
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCC-CccEE-EEEEccCCCeEEEecCCcEEEEEcCCCcC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHIT-GLAYSNTSELLISYNDELVYLFEKNMGLG 121 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~-~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 121 (312)
..+++++.++.+..+|..+++.+...+.......+ ... ...+. .+.. .++++++.+.++.++-+|..++
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~------~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG-- 140 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWF------SKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDG-- 140 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCccccc------ccccccccccccEE-ECCEEEEEcCCCEEEEEECCCC--
Confidence 47777788899999999988855332211100000 000 00000 1111 1345555567899999999888
Q ss_pred CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE-EEEEcC
Q 021453 122 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHP 200 (312)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~v~~~p 200 (312)
+.+......... ...... .+..++.++.++.|..+|..+|+.+-.......... ...-+|
T Consensus 141 --------------~~~W~~~~~~~~--~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP 201 (394)
T PRK11138 141 --------------EVAWQTKVAGEA--LSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP 201 (394)
T ss_pred --------------CCcccccCCCce--ecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC
Confidence 555544322211 111112 245677788899999999999998766543211100 000112
Q ss_pred --CCCeEEEEeCCCcEEEccCCCCCCC-C--CCCCh--hhh--hhhhccCC--CCceeEEecCCceEEEEEecccCccce
Q 021453 201 --HIPMFATCGIEKTVKLWAPMPTDFP-P--LPDNA--EKI--MKANKQGR--EDHSRITLTPDVIMHVLRLQRRQTLAY 269 (312)
Q Consensus 201 --~~~~l~t~~~d~~i~iwd~~~~~~~-~--~~~~~--~~~--~~~~~~~~--~~~~l~s~~~d~~i~i~~~~~~~~~~~ 269 (312)
.+..++.++.++.+...|..+++.. . +.... ... +......+ .+..++.++.++.+..+|..++. ..|
T Consensus 202 ~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~-~~W 280 (394)
T PRK11138 202 ATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ-IVW 280 (394)
T ss_pred EEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC-EEE
Confidence 1234666677888988888877531 1 10000 000 00000111 24566677788888888877663 333
Q ss_pred eEe-e------cCCCccCCCCCCCeEEEeecCCCC
Q 021453 270 RER-R------YNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 270 ~~~-~------~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
... . .....+.....++.++.+|..+|.
T Consensus 281 ~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 281 KREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred eecCCCccCcEEECCEEEEEcCCCeEEEEECCCCc
Confidence 311 1 111222333456778888887764
No 335
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.00013 Score=55.41 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=48.5
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCeEEEE--eCCCcEEEccCCCC
Q 021453 159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATC--GIEKTVKLWAPMPT 222 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~v~~~p~~~~l~t~--~~d~~i~iwd~~~~ 222 (312)
++.+..+++.+|.|+.|++...+.+.....|. .++.....+-.++.++.+ |.|..++.|++...
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 45588899999999999999988887777777 566666666666666666 77777777776654
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0042 Score=56.16 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=88.2
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe-EEEec
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISYN 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~ 107 (312)
.+.++.+++.+.+- ..+|+|-.+|.|..+.=+-.+-. . ..........++|+.+++..+++. +..+.
T Consensus 124 ~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDr-------g----sr~~~~~~~~~pITgL~~~~d~~s~lFv~T 191 (933)
T KOG2114|consen 124 NPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDR-------G----SRQDYSHRGKEPITGLALRSDGKSVLFVAT 191 (933)
T ss_pred CCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcc-------c----cceeeeccCCCCceeeEEecCCceeEEEEe
Confidence 46789999999987 89999999999998863311100 0 011111334689999999999974 55556
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCC-CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
-..|.+|.+.+. . ..+.+..+... +.|..+ ++....+++++ ...|.+|+....++...+
T Consensus 192 t~~V~~y~l~gr----------------~p~~~~ld~~G~~--lnCss~-~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 192 TEQVMLYSLSGR----------------TPSLKVLDNNGIS--LNCSSF-SDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred cceeEEEEecCC----------------CcceeeeccCCcc--ceeeec-CCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 778999998854 2 23445555544 888888 55444344433 457999998877777777
Q ss_pred e-cCccc
Q 021453 187 V-GDRHV 192 (312)
Q Consensus 187 ~-~~~~~ 192 (312)
. +|...
T Consensus 252 ~~g~kk~ 258 (933)
T KOG2114|consen 252 EVGEKKE 258 (933)
T ss_pred cCCCeEE
Confidence 6 66543
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00025 Score=61.45 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=65.5
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE-EEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
+..+.| +|.-..+|.+..+|.|.+..++ .+.+-++..|...++ +++|.|+|+.+|.|-.||+|++-|..++.
T Consensus 23 i~~~ew-nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 23 IKRIEW-NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred eEEEEE-cCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 778888 9999999999999999999988 777888887777777 99999999999999999999999998875
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.63 E-value=0.0093 Score=53.07 Aligned_cols=109 Identities=8% Similarity=0.013 Sum_probs=73.3
Q ss_pred EccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEE
Q 021453 96 YSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFI 174 (312)
Q Consensus 96 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~i 174 (312)
+.++|++... .++.|.+.|..+.... ..+.+..+.... ....+++ +|+|+++++++ .+.+|.|
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~-----------~~~v~~yIPVGK---sPHGV~v-SPDGkylyVanklS~tVSV 347 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANA-----------GSALTRYVPVPK---NPHGVNT-SPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccC-----------CcceEEEEECCC---CccceEE-CCCCCEEEEeCCCCCcEEE
Confidence 3456764443 4678999998761000 003333343322 2688998 99999987665 5899999
Q ss_pred EeccCCee------------EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 175 WKKKGGKL------------VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 175 wd~~~~~~------------~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
.|+.+.+. +.+.....++ ...+|.++|....|...|..|..||+..
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99887542 3333333333 4678999998888888999999999875
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00028 Score=57.91 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=67.8
Q ss_pred CCCceEecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCc
Q 021453 136 EEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKT 213 (312)
Q Consensus 136 ~~~~~~~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~t~~~d~~ 213 (312)
+..+.+.++. ..|.+++| +|..+ ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-+... +..|-..|.
T Consensus 184 kssq~lp~~g--~~Irdlaf-Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 184 KSSQILPGEG--SFIRDLAF-SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred chhhcccccc--hhhhhhcc-CccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 4444455555 44999999 78776 7889999999999999999888888877 68999999987765 666778999
Q ss_pred EEEccCCCC
Q 021453 214 VKLWAPMPT 222 (312)
Q Consensus 214 i~iwd~~~~ 222 (312)
|.|||++..
T Consensus 260 VlvyD~R~~ 268 (463)
T KOG1645|consen 260 VLVYDMRQP 268 (463)
T ss_pred EEEEEccCC
Confidence 999998854
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00018 Score=64.51 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=83.5
Q ss_pred EEEEEccCCCeEEEe-----cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021453 92 TGLAYSNTSELLISY-----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 166 (312)
Q Consensus 92 ~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~ 166 (312)
+-..|+|...+++.+ ..|.|.||-- ++ ++.+... .+ -.+++++| +|..-.|+.|
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tG----------------EPqr~Vt-~P--~hatSLCW-Hpe~~vLa~g 77 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TG----------------EPQRDVT-YP--VHATSLCW-HPEEFVLAQG 77 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CC----------------CCCcccc-cc--eehhhhcc-ChHHHHHhhc
Confidence 345789988766653 2788888843 23 2222222 11 22678999 8988889999
Q ss_pred ccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021453 167 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 167 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
-..|.+.+|...+.+.-.....|..+|..+.|||+|..++|+..-|.|.+|...
T Consensus 78 we~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999999988877766667899999999999999999999999999999865
No 341
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00072 Score=58.78 Aligned_cols=93 Identities=10% Similarity=0.115 Sum_probs=73.4
Q ss_pred CccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceee-EEEEecCCCCEEEE
Q 021453 88 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMS 165 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~s~~~~~l~~ 165 (312)
...+.-+.|+|.-.++|.. .+|.|.+..+. . +.+.++..+... ++ +++| .|+|+.|+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~----------------qRlwtip~p~~~--v~~sL~W-~~DGkllaV 79 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-W----------------QRLWTIPIPGEN--VTASLCW-RPDGKLLAV 79 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-c----------------ceeEeccCCCCc--cceeeee-cCCCCEEEE
Confidence 4568889999999999997 59999988886 3 466666655533 55 9999 999999999
Q ss_pred eccCceEEEEeccCCeeEEEee-cCccceEEEEEcC
Q 021453 166 GSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHP 200 (312)
Q Consensus 166 ~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~~p 200 (312)
|-.||+|++.|..++..+.... .-...|.++.|.|
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999988776632 2345778888864
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.43 E-value=0.0093 Score=54.91 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=56.8
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
....+|++-+.+| .||+|+.+|.||+||-- +. ..++.+.+-..+|..|..+.||+++++..+.
T Consensus 577 ~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~--------------~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 577 KNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK--------------RAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred CCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch--------------hhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 4457788888877 89999999999999943 32 2334445668999999999999998888888
Q ss_pred cEEEEEcC
Q 021453 110 LVYLFEKN 117 (312)
Q Consensus 110 ~i~iwd~~ 117 (312)
.|.+++..
T Consensus 640 yLlLi~t~ 647 (794)
T PF08553_consen 640 YLLLIDTL 647 (794)
T ss_pred eEEEEEEe
Confidence 89888874
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.42 E-value=0.0044 Score=56.94 Aligned_cols=143 Identities=8% Similarity=0.132 Sum_probs=88.7
Q ss_pred cEEEEE-eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--------CCeEEEecCCcEEEE
Q 021453 44 NYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--------SELLISYNDELVYLF 114 (312)
Q Consensus 44 ~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~l~s~~d~~i~iw 114 (312)
++|+.. .....|+-.|+..|+++..+..... .+|..+ .|+ ...+++-++..++.|
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~--------------~~v~~~--~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDD--------------IPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCC--------------cceeEe--cccccccccCCCceEEEECCCceEEe
Confidence 444443 4567888899999986654432221 113332 232 234555589999999
Q ss_pred EcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccce
Q 021453 115 EKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 193 (312)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v 193 (312)
|.+-.. .+++. ............|++- ....+||+|+.+|.|++||--..+....+.+-..+|
T Consensus 558 DpR~~~--------------~k~v~~~~k~Y~~~~~Fs~~aT--t~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 558 DPRLSG--------------NKLVDSQSKQYSSKNNFSCFAT--TEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred ccCCCC--------------CceeeccccccccCCCceEEEe--cCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 998531 01111 0111111122667764 445578999999999999954333344566777899
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEccC
Q 021453 194 NQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 194 ~~v~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
..|..+.+|+++++.+ +..|-|++.
T Consensus 622 ~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEee-cceEEEEEE
Confidence 9999999999966555 567777774
No 344
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.38 E-value=0.00053 Score=36.31 Aligned_cols=37 Identities=32% Similarity=0.665 Sum_probs=30.9
Q ss_pred CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021453 137 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 137 ~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
....+..|... +.++.| .+.++++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGP--VTSVAF-SPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCc--eeEEEE-CCCCCEEEEecCCCeEEEcC
Confidence 44556667655 999999 88889999999999999996
No 345
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.00027 Score=63.87 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=88.7
Q ss_pred cCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC
Q 021453 133 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK 212 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~ 212 (312)
..++..+.|..+... .++++| +...+.|+.|+..|.|++|+..+|........|..+|+.+.-+.+|..+++.+.-.
T Consensus 1089 SRFr~w~~frd~~~~--fTc~af-s~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETAL--FTCIAF-SGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred hhcccchhhhccccc--eeeEEe-ecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc
Confidence 334556677777765 899999 89999999999999999999999999999999999999999999999866665332
Q ss_pred --cEEEccCCCC--CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021453 213 --TVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 213 --~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
-..+|++..- ..+++.+ -..+.++......+.++......++|+++.+.+
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred CchHHHhccccccCccccccc-----cceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 5788997652 1223321 122223332233334444455667777665443
No 346
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.32 E-value=0.00095 Score=37.71 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=29.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 64 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 64 (312)
+.+|.+++|+|.. .+||.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCc
Confidence 4579999999999 79999999999999999 443
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.32 E-value=0.036 Score=47.92 Aligned_cols=62 Identities=6% Similarity=-0.010 Sum_probs=40.5
Q ss_pred cCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
+.+....+....++.+.+.+....+. +. ..+++..++.||+++++|.-..+|.+.+.+..-.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 34444444445555666444332211 22 2368999999999999999999999988875443
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.29 E-value=0.025 Score=38.39 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=61.3
Q ss_pred EEEEEE---ccCCC--eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021453 91 ITGLAY---SNTSE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 91 i~~~~~---~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
|+++++ ..+|+ +|+.+.|..|++|+-. ..+..+.... .|++++- ..+..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~------------------e~~~Ei~e~~---~v~~L~~--~~~~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD------------------EIVAEITETD---KVTSLCS--LGGGRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC------------------cEEEEEeccc---ceEEEEE--cCCCEEEE
Confidence 445554 34553 5555679999999864 2444444332 2788875 34477899
Q ss_pred eccCceEEEEeccCCeeEEEeecCccceEEEEEcC-CC---CeEEEEeCCCcEEE
Q 021453 166 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HI---PMFATCGIEKTVKL 216 (312)
Q Consensus 166 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p-~~---~~l~t~~~d~~i~i 216 (312)
+-.+|+|-+|+-. +.+-..+.. ..+.++.+.. ++ +.|++|-.+|.|-+
T Consensus 59 ~l~NGTVGvY~~~--~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 59 ALANGTVGVYDRS--QRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EecCCEEEEEeCc--ceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 9999999999863 222333322 3355665543 32 24888888887743
No 349
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.29 E-value=0.024 Score=50.55 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=59.2
Q ss_pred CceEEEEeccC-----CeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCC-------------CCCCC
Q 021453 169 CGHLFIWKKKG-----GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDF-------------PPLPD 229 (312)
Q Consensus 169 dg~v~iwd~~~-----~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~~~~~-------------~~~~~ 229 (312)
++.|.+.|..+ .+.+..+.. ......+.++|+|++++.++ .+.+|.|.|+.+.+. ....-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35688888776 344444443 34567899999999965555 789999999887541 01100
Q ss_pred ChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
...++ -..+..++....|.--|+.+-.|++..
T Consensus 374 GlGPL--HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPL--HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcc--eEEECCCCCEEEeEeecceeEEEehHH
Confidence 01111 112344567788888899999999875
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.046 Score=45.06 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=67.7
Q ss_pred CCCccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021453 86 KNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 163 (312)
Q Consensus 86 ~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l 163 (312)
.+-.....|+|||+++.|..+ ..+.|+-|++......... +....+... .....-.++. +.+|.+.
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~----------~~~~~~~~~-~~G~PDG~~v-DadG~lw 227 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG----------RRGFVDFDE-EPGLPDGMAV-DADGNLW 227 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC----------cceEEEccC-CCCCCCceEE-eCCCCEE
Confidence 334455689999999866555 3688888887531111000 111111111 1122445666 7788887
Q ss_pred EEeccCc-eEEEEeccCCeeEEEeecCccceEEEEE-cCCCCeEEEEe
Q 021453 164 MSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEP-HPHIPMFATCG 209 (312)
Q Consensus 164 ~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~v~~-~p~~~~l~t~~ 209 (312)
+++...| .|.+|+.. ++++..+......+++++| .|+.+.|...+
T Consensus 228 ~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 6555554 99999998 9999888877677888888 45555544333
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.1 Score=44.71 Aligned_cols=157 Identities=11% Similarity=0.115 Sum_probs=103.0
Q ss_pred ceEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--c
Q 021453 32 RLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--N 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~ 107 (312)
....++++|++..+.++-. .++++.+.|..+.++... ...+. .+ ..+++.|+|+.+... .
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--------------~~vG~-~P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT--------------IPVGN-TP-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE--------------EecCC-Cc-ceEEECCCCCeEEEEecC
Confidence 3467899999854444444 368888888887764211 11221 22 789999999855554 4
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCc-----eEecccCCceeeEEEEecCCCCEEEEeccC---ceEEEEeccC
Q 021453 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-----VYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKG 179 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g~v~iwd~~~ 179 (312)
++.|.+.|.... ...+ ...... ....+.+ +++++++...... +.+...|..+
T Consensus 181 ~~~v~vi~~~~~----------------~v~~~~~~~~~~~~~---~P~~i~v-~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 181 DNTVSVIDTSGN----------------SVVRGSVGSLVGVGT---GPAGIAV-DPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred CCeEEEEeCCCc----------------ceeccccccccccCC---CCceEEE-CCCCCEEEEEeccCCCceEEEEeCCC
Confidence 999999997654 2221 111111 1456777 8999977665544 5999999998
Q ss_pred CeeEEE-eecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCC
Q 021453 180 GKLVRL-MVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDF 224 (312)
Q Consensus 180 ~~~~~~-~~~~~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~~~~~ 224 (312)
+..... +.........+..+|+|..+.... ..+.+.+-|..+..+
T Consensus 241 ~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 241 GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 876654 221111456788999999977664 458899998877654
No 352
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.21 E-value=0.0015 Score=36.92 Aligned_cols=35 Identities=11% Similarity=0.031 Sum_probs=30.7
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 190 ~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
...|..++|+|...++|.++.+|.|.++.+..+++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 35799999999999999999999999999866543
No 353
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.0056 Score=52.50 Aligned_cols=142 Identities=11% Similarity=0.162 Sum_probs=90.5
Q ss_pred EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--------eEEEecCCcEEEEEc
Q 021453 45 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--------LLISYNDELVYLFEK 116 (312)
Q Consensus 45 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~l~s~~d~~i~iwd~ 116 (312)
+|.++.....++-.|++.|+++.++... .. |.-+.+.|+.+ -|+.-++..|+-||.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~---------------~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFE---------------DD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeecc---------------CC-cceeeccCCcchhcccccccEEeecCCceEEecc
Confidence 4555666778888999999866544322 22 55556666543 344557899999998
Q ss_pred CCCcCCCCCcCCcccccCCCCCceEeccc--CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE
Q 021453 117 NMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 194 (312)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 194 (312)
+-... ..+..-++|. ......|.+ .....++++|+.+|.|++||.-..+....+++...+|.
T Consensus 412 Rv~~~--------------~kl~~~q~kqy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 412 RVQGK--------------NKLAVVQSKQYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK 475 (644)
T ss_pred cccCc--------------ceeeeeeccccccccccceee--ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence 74310 1111222221 111144554 34566899999999999999733333455677888999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEccC
Q 021453 195 QLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 195 ~v~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
.|..+.+|++++..+ +.++.+-++
T Consensus 476 hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 476 HVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eEEeeccCcEEEEec-ccEEEEEEE
Confidence 999999999966555 556666654
No 354
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.17 E-value=0.058 Score=48.84 Aligned_cols=66 Identities=9% Similarity=0.150 Sum_probs=41.0
Q ss_pred eeEEEEecCCCCEEEEeccCceEEE---EeccCCee-E---EEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021453 150 VKGVNFFGPNDEYVMSGSDCGHLFI---WKKKGGKL-V---RLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~i---wd~~~~~~-~---~~~~-~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd 218 (312)
|..+.| +|+|..++... +|.|++ -....|+. + ..+. .-...+.++.|.+++.++ .+..++.-.+|.
T Consensus 450 Issl~w-SpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 450 ISELQL-SRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred cCeEEE-CCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence 999999 99999988765 477777 44444541 1 1122 222346889999998864 444344344444
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.17 E-value=0.0074 Score=52.33 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=89.0
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEE-EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSDEYARVY-DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
+.-..++|.+.+ .+|+-...++|.|+ ++.... ...+.. ...+..|-. |.+|...+++
T Consensus 69 G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~---------------~k~i~~--~~~~~~If~---G~LL~~~~~~ 126 (443)
T PF04053_consen 69 GSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV---------------VKSIKL--PFSVEKIFG---GNLLGVKSSD 126 (443)
T ss_dssp EE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T---------------T-------SS-EEEEE----SSSEEEEETT
T ss_pred CceeEEEEecCc--cEEEEECCCeEEEEEcCcccc---------------ceEEcC--CcccceEEc---CcEEEEECCC
Confidence 345567888854 67777778889996 332211 001101 112333322 8888887777
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC---------
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--------- 180 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--------- 180 (312)
.|.+||..++ +.++.+... .|..+.| ++++++++..+.+ .+.+++.+..
T Consensus 127 ~i~~yDw~~~----------------~~i~~i~v~----~vk~V~W-s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g 184 (443)
T PF04053_consen 127 FICFYDWETG----------------KLIRRIDVS----AVKYVIW-SDDGELVALVTKD-SIYILKYNLEAVAAIPEEG 184 (443)
T ss_dssp EEEEE-TTT------------------EEEEESS-----E-EEEEE--TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB
T ss_pred CEEEEEhhHc----------------ceeeEEecC----CCcEEEE-ECCCCEEEEEeCC-eEEEEEecchhcccccccC
Confidence 9999999887 566666532 2788998 9999999888755 6667664422
Q ss_pred --eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021453 181 --KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 181 --~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
.....+..-...|.+.+|.-+ .|+-.+.. .|+. +-+++...+. +....+......+....+.....++.+..
T Consensus 185 ~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~-~ld~~~yllgy~~~~~~ly~~Dr~~~v~~ 258 (443)
T PF04053_consen 185 VEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA-HLDKPLYLLGYLPKENRLYLIDRDGNVIS 258 (443)
T ss_dssp -GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE-E-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred chhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE-EcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence 023333332568889999765 54444444 6666 3334322221 22222333333334456666667777766
Q ss_pred EEec
Q 021453 259 LRLQ 262 (312)
Q Consensus 259 ~~~~ 262 (312)
+.+.
T Consensus 259 ~~ld 262 (443)
T PF04053_consen 259 YELD 262 (443)
T ss_dssp EE--
T ss_pred EEEC
Confidence 6554
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.13 Score=44.13 Aligned_cols=194 Identities=11% Similarity=0.102 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c---C
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N---D 108 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~---d 108 (312)
-..++.++.+.+.+++...+..|.+.|..+..... ....+ .....++++|+++.+..+ . +
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~--------------~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~ 139 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG--------------SIPVG--LGPVGLAVDPDGKYVYVANAGNGN 139 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceee--------------Eeeec--cCCceEEECCCCCEEEEEecccCC
Confidence 34677888885577777777999999977665321 11122 245688999999744443 2 6
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCCeeEE---
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVR--- 184 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~--- 184 (312)
+.+.+.|..+. +.......-. . -..+++ +|+++.++.+. .++.|.+.|........
T Consensus 140 ~~vsvid~~t~----------------~~~~~~~vG~--~-P~~~a~-~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~ 199 (381)
T COG3391 140 NTVSVIDAATN----------------KVTATIPVGN--T-PTGVAV-DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSV 199 (381)
T ss_pred ceEEEEeCCCC----------------eEEEEEecCC--C-cceEEE-CCCCCeEEEEecCCCeEEEEeCCCcceecccc
Confidence 78888888776 4444432222 1 277888 99999766555 78999999977665543
Q ss_pred --EeecCccceEEEEEcCCCCeEEEEe-CC--CcEEEccCCCCCCCCC--CCChhhhhhhhccCCCCceeEEe-cCCceE
Q 021453 185 --LMVGDRHVVNQLEPHPHIPMFATCG-IE--KTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITL-TPDVIM 256 (312)
Q Consensus 185 --~~~~~~~~v~~v~~~p~~~~l~t~~-~d--~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i 256 (312)
....+ .....+.++|++..+.... .+ +.+...|..++..... ..... ........+++...... ...+.+
T Consensus 200 ~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V 277 (381)
T COG3391 200 GSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTV 277 (381)
T ss_pred ccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeE
Confidence 12222 2345788999999754443 33 5888888887764222 21111 11122244554444443 444677
Q ss_pred EEEEeccc
Q 021453 257 HVLRLQRR 264 (312)
Q Consensus 257 ~i~~~~~~ 264 (312)
.+.|....
T Consensus 278 ~vid~~~~ 285 (381)
T COG3391 278 SVIDGATD 285 (381)
T ss_pred EEEeCCCC
Confidence 77765443
No 357
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.002 Score=59.61 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021453 100 SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 178 (312)
Q Consensus 100 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~ 178 (312)
+..++.+ +.|.+-..|.... ......+.....+|++++| +.+|..++.|-.+|.|.+||+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-----------------L~~~~~ne~v~~~Vtsvaf-n~dg~~l~~G~~~G~V~v~D~~ 160 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-----------------LGPLHQNERVQGPVTSVAF-NQDGSLLLAGLGDGHVTVWDMH 160 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-----------------cchhhcCCccCCcceeeEe-cCCCceeccccCCCcEEEEEcc
Confidence 3345555 5788888887653 2212233333356999999 9999999999999999999999
Q ss_pred CCeeEEEeecCccceEEEE---EcCCCCeEEEEeCCCcEEEcc
Q 021453 179 GGKLVRLMVGDRHVVNQLE---PHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~v~---~~p~~~~l~t~~~d~~i~iwd 218 (312)
.++.++.+..|..+.+.+- +..++..++++..-|. +|.
T Consensus 161 ~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 161 RAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 9999998887776655544 4445566777776675 554
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.14 E-value=0.062 Score=43.78 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=88.8
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 123 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 123 (312)
+.|+.|+.+| +.+++..... .... ..+...|..+...++-+.|+.-.|+.++++++..-....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~--------------~~~~--i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPS--------------KPTR--ILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVS 70 (275)
T ss_pred CEEEEEECCC-EEEEEecCCc--------------ccee--EeecceEEEEEEecccCEEEEEcCCccEEEEchhhcccc
Confidence 6889999888 8999983221 1111 112334899999998888888778999999997642111
Q ss_pred CCcCCcccccCC-CCCceEecccCCceeeEEE-EecCCCCEEEEeccCceEEEEeccCC-----eeEEEeecCccceEEE
Q 021453 124 PLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVN-FFGPNDEYVMSGSDCGHLFIWKKKGG-----KLVRLMVGDRHVVNQL 196 (312)
Q Consensus 124 ~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~-~~s~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~v 196 (312)
... +.. ..+. .....+. .. +.+...+ -....+...++.....+|.+|..... +..+.+.. ...+..+
T Consensus 71 ~~~-~~~-~~~~~~~~~~~~-~~--~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i 144 (275)
T PF00780_consen 71 TSA-PLA-FPKSRSLPTKLP-ET--KGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSI 144 (275)
T ss_pred ccc-ccc-cccccccccccc-cc--CCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEE
Confidence 000 000 0000 0000111 11 1133333 10234444445555668998887653 34455543 3678899
Q ss_pred EEcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021453 197 EPHPHIPMFATCGIEKTVKLWAPMPTDFPPL 227 (312)
Q Consensus 197 ~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~ 227 (312)
+|. ++.++.+. .+...+.|+.++....+
T Consensus 145 ~~~--~~~i~v~~-~~~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 145 AFL--GNKICVGT-SKGFYLIDLNTGSPSEL 172 (275)
T ss_pred EEe--CCEEEEEe-CCceEEEecCCCCceEE
Confidence 997 55666665 45688888887654433
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.14 E-value=0.14 Score=43.97 Aligned_cols=173 Identities=11% Similarity=0.044 Sum_probs=87.5
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-----CCC---
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSE--- 101 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~--- 101 (312)
.++|++++.|.-| ++|.|..+|.+.|.|++...++.... +.. ..........++++.|+. |+.
T Consensus 86 ~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~----i~~---~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 86 QGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNEN----IRE---SFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEE----GGG-----T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred CCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecc----ccc---cccccccccCeeEEEEEEEecCCCcccce
Confidence 6789999999777 99999999999999998776542210 000 001123456688888863 331
Q ss_pred eEEE-ecCCcEEEEEcCC-CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-C------------------
Q 021453 102 LLIS-YNDELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-D------------------ 160 (312)
Q Consensus 102 ~l~s-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~------------------ 160 (312)
.+.. .+.|.+.+|.+.- ..+. +.. +.......+.. .+..+...+.+ |
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~----f~v------~~~~~~~~~~~--~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGR----FSV------QFAGATTNHDS--PILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-----EEE------EEEEEE--SS------EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEEEEeCCCCEEEEEEecCCCCc----eEE------EEeeccccCCC--ceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 4444 4689999998752 1000 000 00000111221 23333321111 1
Q ss_pred -CEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEc-----CCCCeEEEEeCCCcEEEccCCCCC
Q 021453 161 -EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-----PHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 161 -~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~-----p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
+-++....+..++++...+.+..............+.+- ..+..|+.-..+|.|+++.+-.-+
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 123334447789999988777665544222233344442 244558888899999999987754
No 360
>PHA02713 hypothetical protein; Provisional
Probab=97.09 E-value=0.047 Score=49.34 Aligned_cols=90 Identities=2% Similarity=0.054 Sum_probs=46.2
Q ss_pred eEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC------CcEEEccCCC-CCCCCCCCChhhhhhhhccC
Q 021453 171 HLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMP-TDFPPLPDNAEKIMKANKQG 241 (312)
Q Consensus 171 ~v~iwd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~l~t~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 241 (312)
.+..||..+.+... .+.........+ .-++++.+.|+.+ ..+..||+.+ .+...+..............
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVV--SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEE--EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 47778887765432 221111111112 2256777777654 2467899998 56543332222222222233
Q ss_pred CCCceeEEecCCc--eEEEEEec
Q 021453 242 REDHSRITLTPDV--IMHVLRLQ 262 (312)
Q Consensus 242 ~~~~~l~s~~~d~--~i~i~~~~ 262 (312)
.++.+.+.|+.++ .+..+|..
T Consensus 511 ~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred ECCEEEEEeeecceeehhhcCcc
Confidence 3667778888777 44445543
No 361
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.00066 Score=61.13 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=82.3
Q ss_pred EEEecCCCCEEEEec----cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCC
Q 021453 153 VNFFGPNDEYVMSGS----DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP 228 (312)
Q Consensus 153 v~~~s~~~~~l~~~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 228 (312)
.+| +|...++++++ ..|.|.||- .+|++-+... -.-.+++++|||..-.|+.|=.-|.+.+|...+.+..++.
T Consensus 21 ~SW-HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 21 SSW-HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccc-CCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 446 88888888775 467888874 4666544332 1234577999999888999989999999999988876666
Q ss_pred CChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021453 229 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
......+....|++++..++++..-|.+.+|+..
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5444455677799999999999999999999875
No 362
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0062 Score=56.55 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=70.4
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 122 (312)
-.++.|++.|.+...|+...- ++...-..-..+|++++|+.+|.+++.| .+|.|.+||...+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL--------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--- 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL--------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--- 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc--------------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---
Confidence 468888888999888876421 2111113346789999999999988887 7999999999887
Q ss_pred CCCcCCcccccCCCCCceEecccCCc-eeeEEEEecCCCCEEEEeccCceEEEEe
Q 021453 123 SPLSLSPEDLQKREEPQVYSGHRNSQ-TVKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
+..+.+..+..+. .|..+.+ ...+..++++...|. +|.
T Consensus 163 -------------k~l~~i~e~~ap~t~vi~v~~-t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 163 -------------KILKVITEHGAPVTGVIFVGR-TSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred -------------cceeeeeecCCccceEEEEEE-eCCCcEEEEccCCCc--eEE
Confidence 6777776555431 2444555 445557888888776 444
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.90 E-value=0.13 Score=43.05 Aligned_cols=153 Identities=15% Similarity=0.201 Sum_probs=83.9
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-ecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.+++|++++-- .+ . |+++. .+.|.+|++...+ +. .... ......+.++... +.+++.+
T Consensus 87 ~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~~~l~-------------~~~~-~~~~~~i~sl~~~--~~~I~vgD 146 (321)
T PF03178_consen 87 VKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNSKTLL-------------KKAF-YDSPFYITSLSVF--KNYILVGD 146 (321)
T ss_dssp ESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETTSSEE-------------EEEE-E-BSSSEEEEEEE--TTEEEEEE
T ss_pred ecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCcccch-------------hhhe-ecceEEEEEEecc--ccEEEEEE
Confidence 36788888866 34 4 44433 4899999998775 32 1111 1112356666554 4466666
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC-------
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG------- 179 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~------- 179 (312)
....+.++...... ..+..+.....+..++++.|. ++++.++.+..+|.+.++....
T Consensus 147 ~~~sv~~~~~~~~~---------------~~l~~va~d~~~~~v~~~~~l-~d~~~~i~~D~~gnl~~l~~~~~~~~~~~ 210 (321)
T PF03178_consen 147 AMKSVSLLRYDEEN---------------NKLILVARDYQPRWVTAAEFL-VDEDTIIVGDKDGNLFVLRYNPEIPNSRD 210 (321)
T ss_dssp SSSSEEEEEEETTT---------------E-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTT
T ss_pred cccCEEEEEEEccC---------------CEEEEEEecCCCccEEEEEEe-cCCcEEEEEcCCCeEEEEEECCCCccccc
Confidence 46667666443210 223333333334558888884 3446899999999999998652
Q ss_pred C--ee--EEEeecCccceEEE---EEcCC--CC------eEEEEeCCCcEEEcc
Q 021453 180 G--KL--VRLMVGDRHVVNQL---EPHPH--IP------MFATCGIEKTVKLWA 218 (312)
Q Consensus 180 ~--~~--~~~~~~~~~~v~~v---~~~p~--~~------~l~t~~~d~~i~iwd 218 (312)
+ +. +..+. ....|+++ ++.|. +. .++.++.+|.|...-
T Consensus 211 ~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 211 GDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp TTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred ccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 2 22 22232 23567777 55552 22 377888899988443
No 364
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.90 E-value=0.12 Score=40.01 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=67.2
Q ss_pred EEEEEEccCCCeEEE--ecCCcEEEEE--cCCCcCCCCCcCCcccccCCCCCceEeccc--CCceeeEEEEecCCCCEEE
Q 021453 91 ITGLAYSNTSELLIS--YNDELVYLFE--KNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 91 i~~~~~~~~~~~l~s--~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~s~~~~~l~ 164 (312)
-..++|+.+.+.+.. +.+-.|.-|| ..++...+ .+.+..++... .....-.++. +.+|++.+
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-----------r~~i~dlrk~~~~e~~~PDGm~I-D~eG~L~V 227 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-----------RKVIFDLRKSQPFESLEPDGMTI-DTEGNLYV 227 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccC-----------cceeEEeccCCCcCCCCCCcceE-ccCCcEEE
Confidence 347889988774444 3477786677 55542111 11211111100 0001234555 67899999
Q ss_pred EeccCceEEEEeccCCeeEEEeecCccceEEEEEc-CCCCeEEE
Q 021453 165 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-PHIPMFAT 207 (312)
Q Consensus 165 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~-p~~~~l~t 207 (312)
+.-..++|...|..+|+.+.+++-....|++++|- |+-..|.+
T Consensus 228 a~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 228 ATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred EEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 99999999999999999999999888999999994 33344433
No 365
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.81 E-value=0.23 Score=41.12 Aligned_cols=159 Identities=9% Similarity=-0.034 Sum_probs=89.2
Q ss_pred EEEEEcCCCCcEEEEE----------eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021453 34 NAIVIDPRNPNYFAVG----------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
-.+..+|++ +.++++ -..-.|.+||..+.....++..+..-+ .... .....++++.+++++
T Consensus 39 ~~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R------~~~~--~~~~~~~ls~dgk~~ 109 (342)
T PF06433_consen 39 GNVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR------AQVV--PYKNMFALSADGKFL 109 (342)
T ss_dssp EEEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--------BS----GGGEEE-TTSSEE
T ss_pred CceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch------heec--ccccceEEccCCcEE
Confidence 346788998 566553 234569999999887543322111100 0000 112245788899866
Q ss_pred EEe--c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc-C
Q 021453 104 ISY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-G 179 (312)
Q Consensus 104 ~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-~ 179 (312)
... . ...|.|.|+..+ +.+..+.... +...| +...+-+.+-+.||.+.-..+. .
T Consensus 110 ~V~N~TPa~SVtVVDl~~~----------------kvv~ei~~PG-----C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 110 YVQNFTPATSVTVVDLAAK----------------KVVGEIDTPG-----CWLIY-PSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp EEEEESSSEEEEEEETTTT----------------EEEEEEEGTS-----EEEEE-EEETTEEEEEETTSCEEEEEETST
T ss_pred EEEccCCCCeEEEEECCCC----------------ceeeeecCCC-----EEEEE-ecCCCceEEEecCCceEEEEECCC
Confidence 664 3 778999999876 5555444222 22334 3334557788889999888887 5
Q ss_pred CeeEEEee----cCccc-eEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 180 GKLVRLMV----GDRHV-VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 180 ~~~~~~~~----~~~~~-v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
|+...... ....+ +..-++...+..++-.+.+|.|+--|+....
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 65542221 11122 2233444455556667888999988887765
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.61 E-value=0.42 Score=41.60 Aligned_cols=159 Identities=12% Similarity=0.201 Sum_probs=82.1
Q ss_pred ceEEEEEcCCCCcEEEEE-eCCC----eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021453 32 RLNAIVIDPRNPNYFAVG-GSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 105 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~-~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 105 (312)
.+..++++|++ +++|.+ +..| .++++|+.+++.+ ...+ .. .....+.|.++++.|+.
T Consensus 125 ~~~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l-------------~d~i-~~--~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFL-------------PDGI-EN--PKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEE-------------EEEE-EE--EESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCc-------------CCcc-cc--cccceEEEeCCCCEEEEE
Confidence 44478899999 555543 4444 4999999998732 1111 11 11223999999885444
Q ss_pred ec-C----------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---C-c
Q 021453 106 YN-D----------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---C-G 170 (312)
Q Consensus 106 ~~-d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---d-g 170 (312)
.. + ..|+.|.+.+... .-...+...........+.. ++++++|+.... + .
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~--------------~d~lvfe~~~~~~~~~~~~~-s~d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQS--------------EDELVFEEPDEPFWFVSVSR-SKDGRYLFISSSSGTSES 252 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GG--------------G-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEE
T ss_pred EeCcccccccCCCCcEEEEEECCCChH--------------hCeeEEeecCCCcEEEEEEe-cCcccEEEEEEEccccCC
Confidence 32 2 1378888876510 11234444433211456776 899999775432 3 4
Q ss_pred eEEEEeccCC----eeEEEeecCc-cceEEEEEcCCCCeEEEEe---CCCcEEEccCCCCC
Q 021453 171 HLFIWKKKGG----KLVRLMVGDR-HVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD 223 (312)
Q Consensus 171 ~v~iwd~~~~----~~~~~~~~~~-~~v~~v~~~p~~~~l~t~~---~d~~i~iwd~~~~~ 223 (312)
.+++.++..+ .....+.... +....+... .+.+++... ..+.|.-.++....
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence 5788888764 2233333233 333334333 444443332 23455555555443
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.59 E-value=0.44 Score=43.25 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcEEEEEeCC------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 33 LNAIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-.+++... + .++++|+.| .++..||..+.++....+ ... ..+.-.+..+ +|.+.|.|
T Consensus 325 ~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~----------M~~-~R~~~~v~~l----~g~iYavG 387 (571)
T KOG4441|consen 325 RVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP----------MNT-KRSDFGVAVL----DGKLYAVG 387 (571)
T ss_pred cccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceeccCC----------ccC-ccccceeEEE----CCEEEEEe
Confidence 44555554 3 689999988 457788888777542210 000 1112222222 56655554
Q ss_pred -cCCc-----EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc------eEEE
Q 021453 107 -NDEL-----VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG------HLFI 174 (312)
Q Consensus 107 -~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg------~v~i 174 (312)
.||. +-.||..+.. +.....+...... ...+ .-+|...++|+.++ .+..
T Consensus 388 G~dg~~~l~svE~YDp~~~~--------------W~~va~m~~~r~~--~gv~---~~~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 388 GFDGEKSLNSVECYDPVTNK--------------WTPVAPMLTRRSG--HGVA---VLGGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred ccccccccccEEEecCCCCc--------------ccccCCCCcceee--eEEE---EECCEEEEEcCcCCCccccceEEE
Confidence 4654 6677776541 1222212211111 2222 23677778888544 5778
Q ss_pred EeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCCC-----cEEEccCCCCCCCCCCCChhhhhhhhccCCCCcee
Q 021453 175 WKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSR 247 (312)
Q Consensus 175 wd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~l~t~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (312)
||..+++... .+..-..... ++ .-++.+.+.||.|+ +|..||+.+.....+...............++.+.
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly 526 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLY 526 (571)
T ss_pred EcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEE
Confidence 8887765432 2221111111 21 22667788888776 37789998887654432222221111122355667
Q ss_pred EEecCCce
Q 021453 248 ITLTPDVI 255 (312)
Q Consensus 248 ~s~~~d~~ 255 (312)
+.|+.|+.
T Consensus 527 ~vGG~~~~ 534 (571)
T KOG4441|consen 527 AVGGFDGN 534 (571)
T ss_pred EEecccCc
Confidence 77776643
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.48 E-value=0.2 Score=45.32 Aligned_cols=218 Identities=13% Similarity=0.095 Sum_probs=108.6
Q ss_pred cEEEEEeCC------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ecC------Cc
Q 021453 44 NYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND------EL 110 (312)
Q Consensus 44 ~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d------~~ 110 (312)
.+++.|+.+ ..+..||..++++...... . ....-.+++.. ++.+.++ |.+ ..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-------------~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ 350 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-------------P-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSS 350 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCC-------------C-cccccccEEEE-CCEEEEEccccCCCcccce
Confidence 688888877 4688899888764322111 0 11112233433 3455555 446 24
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce-----EEEEeccCCeeE--
Q 021453 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-----LFIWKKKGGKLV-- 183 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-----v~iwd~~~~~~~-- 183 (312)
+..||...+ ++.....+...+.. ..++ .-+|...++|+.||. +-.||..+.+.-
T Consensus 351 ve~YD~~~~--------------~W~~~a~M~~~R~~---~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 351 VERYDPRTN--------------QWTPVAPMNTKRSD---FGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred EEEecCCCC--------------ceeccCCccCcccc---ceeE--EECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 678887664 11222222222221 2222 246888889998874 667887765432
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCC------CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCce--
Q 021453 184 RLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI-- 255 (312)
Q Consensus 184 ~~~~~~~~~v~~v~~~p~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-- 255 (312)
..+.........+.+ +|.+.+.||.+ .++..||+.+......+.-...-........++.+.+.|+.++.
T Consensus 412 a~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSA 489 (571)
T ss_pred CCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCc
Confidence 222211122222223 77788888755 35788999988764443222211111112235667777777752
Q ss_pred ---EEEEEecccCccceeE-eecCCCccCCCCCCCeEEEeecCCCCC
Q 021453 256 ---MHVLRLQRRQTLAYRE-RRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 256 ---i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
+..+|..+. ...... -...........-++.+|+++..++..
T Consensus 490 ~~~VE~ydp~~~-~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 490 LSSVERYDPETN-QWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred cceEEEEcCCCC-ceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 444553332 211111 111111111123455689998766543
No 369
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.48 E-value=0.026 Score=47.90 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=61.6
Q ss_pred cCCCCEEEEec---------cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021453 157 GPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL 227 (312)
Q Consensus 157 s~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~ 227 (312)
||++++++... ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+++..++....+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 46777766632 356799999998765443332 56788999999999988886 68999999876543222
Q ss_pred C--C-------Chh-----h---hhhhhccCCCCceeEEecCC-ceEEEEE
Q 021453 228 P--D-------NAE-----K---IMKANKQGREDHSRITLTPD-VIMHVLR 260 (312)
Q Consensus 228 ~--~-------~~~-----~---~~~~~~~~~~~~~l~s~~~d-~~i~i~~ 260 (312)
. + ... . .....+|++++..++....| ..++.+.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 1 1 111 1 12345677877777665544 3444443
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.43 E-value=0.12 Score=46.94 Aligned_cols=102 Identities=17% Similarity=0.068 Sum_probs=60.9
Q ss_pred ccEEEEEEccCCCeEEEec-------CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021453 89 IHITGLAYSNTSELLISYN-------DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~-------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+.+.+.+|+|+.++... |. .|.+++... .......+. ..+.-.| +|+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-----------------~~~~lt~g~----~~t~PsW-spD 407 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-----------------VAVQVLEGH----SLTRPSW-SLD 407 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-----------------cceeeecCC----CCCCceE-CCC
Confidence 4577889999998665532 33 455555422 222222222 1677788 899
Q ss_pred CCEEEEeccC------------ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021453 160 DEYVMSGSDC------------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 160 ~~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~i 216 (312)
|..|++.... +.+.+.++..++... ...+.|..+.|||+|..++... ++.|.+
T Consensus 408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 8877766533 233333333332222 2245799999999999877665 577777
No 371
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.43 E-value=0.36 Score=38.69 Aligned_cols=156 Identities=12% Similarity=0.170 Sum_probs=87.5
Q ss_pred EEEcCCCCcEEEEEeC-----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCc
Q 021453 36 IVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL 110 (312)
Q Consensus 36 ~~~~p~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~ 110 (312)
-.|||+| .+|+..-. -|.|=|||.+.+- ..+.+| ..|.-....+.|.+||+.++..+.|.
T Consensus 119 Gvfs~dG-~~LYATEndfd~~rGViGvYd~r~~f--------qrvgE~------~t~GiGpHev~lm~DGrtlvvanGGI 183 (366)
T COG3490 119 GVFSPDG-RLLYATENDFDPNRGVIGVYDAREGF--------QRVGEF------STHGIGPHEVTLMADGRTLVVANGGI 183 (366)
T ss_pred cccCCCC-cEEEeecCCCCCCCceEEEEeccccc--------ceeccc------ccCCcCcceeEEecCCcEEEEeCCce
Confidence 4689999 67666533 3789999998543 122222 55666677899999999877754331
Q ss_pred -------------------EEEEEcCCCcCCCCCcCCcccccCCCCCce--Ee--cccCCceeeEEEEecCCCCEEEEec
Q 021453 111 -------------------VYLFEKNMGLGPSPLSLSPEDLQKREEPQV--YS--GHRNSQTVKGVNFFGPNDEYVMSGS 167 (312)
Q Consensus 111 -------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~~v~~~s~~~~~l~~~~ 167 (312)
+.+.|..++ .++.. +. .+. ..+..++. .++|..++.+-
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG----------------~liekh~Lp~~l~~--lSiRHld~-g~dgtvwfgcQ 244 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATG----------------NLIEKHTLPASLRQ--LSIRHLDI-GRDGTVWFGCQ 244 (366)
T ss_pred ecccccCccccchhhcCccEEEEecccc----------------chhhhccCchhhhh--cceeeeee-CCCCcEEEEEE
Confidence 122221121 22211 11 122 22777776 77777665554
Q ss_pred cCce-----EEEEeccCCeeEEEeec-------CccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCCC
Q 021453 168 DCGH-----LFIWKKKGGKLVRLMVG-------DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFP 225 (312)
Q Consensus 168 ~dg~-----v~iwd~~~~~~~~~~~~-------~~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~ 225 (312)
..|. -.+=....++++..+.. ....|-+++.+.+...++..+ ..+..-+||..++.+.
T Consensus 245 y~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 245 YRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred eeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 3221 11222233444443332 123466788877666655555 5566788999999763
No 372
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.34 E-value=0.2 Score=41.18 Aligned_cols=155 Identities=15% Similarity=0.198 Sum_probs=78.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
...+..+.-++++ ++++++..-....-|+...... .+.. ......|..+.|.|++.+.+.+..|
T Consensus 144 ~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w-------------~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg 207 (302)
T PF14870_consen 144 SGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTW-------------QPHN--RNSSRRIQSMGFSPDGNLWMLARGG 207 (302)
T ss_dssp ---EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--------------EEEE----SSS-EEEEEE-TTS-EEEEETTT
T ss_pred cceeEeEEECCCC-cEEEEECcccEEEEecCCCccc-------------eEEc--cCccceehhceecCCCCEEEEeCCc
Confidence 4568888888988 7777776655555677553221 1111 2235789999999999887777888
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee--
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-- 187 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-- 187 (312)
.|+.=+..... .+... .........-.+..++| .+++...++|+. |.+ +...+.|+.-...+
T Consensus 208 ~~~~s~~~~~~------------~~w~~-~~~~~~~~~~~~ld~a~-~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 208 QIQFSDDPDDG------------ETWSE-PIIPIKTNGYGILDLAY-RPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVG 271 (302)
T ss_dssp EEEEEE-TTEE------------EEE----B-TTSS--S-EEEEEE-SSSS-EEEEEST-T-E-EEESSTTSS-EE-GGG
T ss_pred EEEEccCCCCc------------ccccc-ccCCcccCceeeEEEEe-cCCCCEEEEeCC-ccE-EEeCCCCccceECccc
Confidence 88887722110 00000 00111111112889999 777777666654 444 45556666544433
Q ss_pred -cCccceEEEEEcCCCCeEEEEeCCCcEEEc
Q 021453 188 -GDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217 (312)
Q Consensus 188 -~~~~~v~~v~~~p~~~~l~t~~~d~~i~iw 217 (312)
.-...++.+.|.+..+-++.| .+|.|-=|
T Consensus 272 ~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred cCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 223467889887665666655 57776544
No 373
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.34 E-value=0.22 Score=45.04 Aligned_cols=110 Identities=6% Similarity=0.131 Sum_probs=70.8
Q ss_pred EEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE-ecCCCCEEEEecc
Q 021453 91 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSD 168 (312)
Q Consensus 91 i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~s~~~~~l~~~~~ 168 (312)
+.-+.-+.-++..+.. +...+.|||...+ ..... ........|.++.| +.|+++.+++.+.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~----------------~lE~~-~~f~~~~~I~dLDWtst~d~qsiLaVGf 94 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSG----------------VLEYE-ESFSEDDPIRDLDWTSTPDGQSILAVGF 94 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCc----------------EEEEe-eeecCCCceeeceeeecCCCCEEEEEEc
Confidence 3444445555544444 4668999999876 21111 11112244899998 4678999999999
Q ss_pred CceEEEEecc---------CCeeEEEe--ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021453 169 CGHLFIWKKK---------GGKLVRLM--VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 169 dg~v~iwd~~---------~~~~~~~~--~~~~-~~v~~v~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
.+.|.++.-. +..++..+ ..|+ .+|.+..|.++|..++.++ ..+.|++-
T Consensus 95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 9999998631 11233333 3444 6899999999998876665 67788774
No 374
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.30 E-value=0.02 Score=48.58 Aligned_cols=92 Identities=13% Similarity=0.192 Sum_probs=56.2
Q ss_pred ccCCCeEEE----------ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021453 97 SNTSELLIS----------YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 166 (312)
Q Consensus 97 ~~~~~~l~s----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~ 166 (312)
|||+++++. +..+.+.+||+.++ ....+..... .+....| +|+|++++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~-----------------~~~~l~~~~~--~~~~~~~-sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG-----------------EITPLTPPPP--KLQDAKW-SPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT-----------------EEEESS-EET--TBSEEEE--SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC-----------------ceEECcCCcc--cccccee-ecCCCeeEEE
Confidence 577775544 22456899999875 2222222232 3778888 9999999877
Q ss_pred ccCceEEEEeccCCeeEEEe-ecC----------------ccceEEEEEcCCCCeEEEEe
Q 021453 167 SDCGHLFIWKKKGGKLVRLM-VGD----------------RHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 167 ~~dg~v~iwd~~~~~~~~~~-~~~----------------~~~v~~v~~~p~~~~l~t~~ 209 (312)
. ++.|++.+..+++..+.- .+. -+.-..+-|||++++||..-
T Consensus 61 ~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp E-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred e-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 5 689999998877543211 110 01224578999999987765
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.28 E-value=0.0056 Score=46.84 Aligned_cols=106 Identities=7% Similarity=0.049 Sum_probs=59.8
Q ss_pred CCCCEEEEeccCceEEEEeccC-CeeEEEeecCccceEEE-EEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChh-hh
Q 021453 158 PNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQL-EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE-KI 234 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~v-~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~ 234 (312)
..+..+++|+.+|.|.+|.... +.....+......|.++ .--.++.+..+++.|+.||.|++...+..-..++.. .-
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 3467789999999999998762 22111111122233332 223345578888999999999998877543333332 11
Q ss_pred hhhhccCCCCceeEEe--cCCceEEEEEecc
Q 021453 235 MKANKQGREDHSRITL--TPDVIMHVLRLQR 263 (312)
Q Consensus 235 ~~~~~~~~~~~~l~s~--~~d~~i~i~~~~~ 263 (312)
.........++.+... +.|..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 1111122233444444 5666666676543
No 376
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.20 E-value=0.31 Score=38.47 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=52.1
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
-|.+++.|+..|.+++.+.++|..+..+..-..-=......+++..+..++.|++.+.-|+++..
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 47889999999999999999998777665433221234567899999999999999999998765
No 377
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.14 E-value=0.91 Score=40.49 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=43.0
Q ss_pred cCCCCEEEEeccCc------------------eEEEEeccCCeeEEEeecCccce------EEEEEc----CCCC---eE
Q 021453 157 GPNDEYVMSGSDCG------------------HLFIWKKKGGKLVRLMVGDRHVV------NQLEPH----PHIP---MF 205 (312)
Q Consensus 157 s~~~~~l~~~~~dg------------------~v~iwd~~~~~~~~~~~~~~~~v------~~v~~~----p~~~---~l 205 (312)
++.+..++.++.++ .|.-+|..+|+.+-.++.-.... ....+. -++. .+
T Consensus 225 d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V 304 (488)
T cd00216 225 DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAI 304 (488)
T ss_pred eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEE
Confidence 45566777776654 79999999998876654211111 001111 1232 57
Q ss_pred EEEeCCCcEEEccCCCCCC
Q 021453 206 ATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 206 ~t~~~d~~i~iwd~~~~~~ 224 (312)
+.++.+|.+...|.++++.
T Consensus 305 ~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 305 VHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred EEECCCceEEEEECCCCcE
Confidence 7788899999999988863
No 378
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.10 E-value=0.34 Score=41.37 Aligned_cols=157 Identities=14% Similarity=0.183 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCCcEEEEEe-----------CCC-eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC
Q 021453 32 RLNAIVIDPRNPNYFAVGG-----------SDE-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT 99 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~-----------~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 99 (312)
....|+|.++| +++++-. ..+ .|.+++-..+. ... .....+.........+++.++
T Consensus 15 ~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd--------G~~---d~~~vfa~~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 15 NPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGD--------GKY---DKSNVFAEELSMVTGLAVAVG 82 (367)
T ss_pred CCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC--------CCc---ceeEEeecCCCCccceeEecC
Confidence 35689999998 6666642 223 67666543221 000 011111222334578899998
Q ss_pred CCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc--CCceeeEEEEecCCCCEEEEecc---------
Q 021453 100 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSD--------- 168 (312)
Q Consensus 100 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~s~~~~~l~~~~~--------- 168 (312)
| ++++......++.+..... ..+.. .. .....+.... .......+.| .|+|.+.++-+.
T Consensus 83 G-lyV~~~~~i~~~~d~~gdg-~ad~~--~~-----~l~~~~~~~~~~~~~~~~~l~~-gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 83 G-VYVATPPDILFLRDKDGDD-KADGE--RE-----VLLSGFGGQINNHHHSLNSLAW-GPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred C-EEEeCCCeEEEEeCCCCCC-CCCCc--cE-----EEEEccCCCCCcccccccCceE-CCCCCEEEecccCCCceeccC
Confidence 8 6665444333343543221 00000 00 0111111110 0012677888 899886665442
Q ss_pred ----------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC
Q 021453 169 ----------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE 211 (312)
Q Consensus 169 ----------dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d 211 (312)
.|.|.-++..+++.. .+...-.....++|+|+|.++++-..+
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCccCcccccCceEEEEecCCCeEE-EEecCcCCCccceECCCCCEEEEccCC
Confidence 145666666655432 332222345689999999887765533
No 379
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.08 E-value=0.73 Score=40.00 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=27.2
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021453 89 IHITGLAYSNTSELLISYNDELVYLFEKNMG 119 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 119 (312)
+.+..+.|+.+.++++...||.+++||+...
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 7899999999878888889999999998754
No 380
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.03 E-value=0.88 Score=39.32 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=92.4
Q ss_pred cCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-----CCCeEEEecCCcEEE
Q 021453 39 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSELLISYNDELVYL 113 (312)
Q Consensus 39 ~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~s~~d~~i~i 113 (312)
++++...+++|+..|.++||+....... +-..+.. ..-..+|..++.-+ +...||.-.-..+.+
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~-------~~~lllE----~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v 101 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQ-------PEDLLLE----TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV 101 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCC-------CccEEEE----EecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence 3455579999999999999999544310 0000111 12246777776543 223666667888999
Q ss_pred EEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE---ecCC-CCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021453 114 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF---FGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
|.+....+..... .. -.+..+..|.-......+++ -... ..++.+=+.||.+.+|+-+.-.....+..
T Consensus 102 Y~v~~~~g~~~~g------~~-~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 102 YSVSLVDGTVEHG------NQ-YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred EEEEecCCCcccC------cE-EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 9884331110000 00 01122222322222233332 1122 36788889999999999775443344433
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021453 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 190 ~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
.--.--+.+.|.-..|++++.+..|.-|..
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 112234778888889999998888888875
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.55 Score=37.70 Aligned_cols=102 Identities=11% Similarity=0.150 Sum_probs=68.1
Q ss_pred EEEEEEccCCC-eEEEe-cCC-cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021453 91 ITGLAYSNTSE-LLISY-NDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 167 (312)
Q Consensus 91 i~~~~~~~~~~-~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~ 167 (312)
...|+++|... -++.+ .-| ...++|.... +...++....+.-.--.=.| +++|.+|+..-
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~----------------~~pv~~~s~~~RHfyGHGvf-s~dG~~LYATE 132 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGA----------------QEPVTLVSQEGRHFYGHGVF-SPDGRLLYATE 132 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCC----------------cCcEEEecccCceeeccccc-CCCCcEEEeec
Confidence 34678888765 33334 444 4678888776 44444443333211223346 99999998764
Q ss_pred c-----CceEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021453 168 D-----CGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 168 ~-----dg~v~iwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~l~t~~ 209 (312)
. -|.|-|||.+.+ +.+.++..|.-....+.|.+||+.++.+.
T Consensus 133 ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 133 NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 3 467999998753 45677778877778899999999987764
No 382
>PHA02713 hypothetical protein; Provisional
Probab=96.00 E-value=0.53 Score=42.71 Aligned_cols=136 Identities=9% Similarity=0.039 Sum_probs=65.3
Q ss_pred CCCEEEEeccCc-----eEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC--------------------
Q 021453 159 NDEYVMSGSDCG-----HLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE-------------------- 211 (312)
Q Consensus 159 ~~~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~l~t~~~d-------------------- 211 (312)
+++..+.|+.++ .+..||..+.+... .+.........++. ++.+.+.||.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 577777787654 47889988664432 22111111112222 67777777754
Q ss_pred ---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC------ceEEEEEecccCccceeEeecCC-CccCC
Q 021453 212 ---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRRQTLAYRERRYNA-ADFES 281 (312)
Q Consensus 212 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~i~~~~~~~~~~~~~~~~~~-~~~~~ 281 (312)
..+..||+.+.....+...............++.+.+.|+.+ ..+..+|..+.+.......-+.. .....
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 247789988876543332211111111122345566666543 23455654431122222111111 11111
Q ss_pred CCCCCeEEEeecCCC
Q 021453 282 DEEEGETYLLGFSDS 296 (312)
Q Consensus 282 ~~~~~~v~~~~~~~~ 296 (312)
..-++.+|+++--++
T Consensus 509 ~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 509 ILHDNTIMMLHCYES 523 (557)
T ss_pred EEECCEEEEEeeecc
Confidence 233556999986555
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.99 E-value=0.62 Score=37.24 Aligned_cols=156 Identities=10% Similarity=0.105 Sum_probs=88.8
Q ss_pred cceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 108 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d 108 (312)
.-...+.|..++ .++-+.+.-| .|+.+|+.+++...... + ....---.++...+.-+..+-.+
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~------------l--~~~~FgEGit~~~d~l~qLTWk~ 109 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVP------------L--PPRYFGEGITILGDKLYQLTWKE 109 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE---------------TTT--EEEEEEETTEEEEEESSS
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEE------------C--CccccceeEEEECCEEEEEEecC
Confidence 345578886666 6777766655 79999999987432111 0 00111223444433334455579
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
+...+||..+- +.+..+.-... =..++. +++.|+.......|+++|..+.+....+..
T Consensus 110 ~~~f~yd~~tl----------------~~~~~~~y~~E---GWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 110 GTGFVYDPNTL----------------KKIGTFPYPGE---GWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp SEEEEEETTTT----------------EEEEEEE-SSS-----EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred CeEEEEccccc----------------eEEEEEecCCc---ceEEEc---CCCEEEEECCccceEEECCcccceEEEEEE
Confidence 99999999876 56666654432 466664 567777777788999999988777666542
Q ss_pred C--c---cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 189 D--R---HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 189 ~--~---~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
. . ..++.+.|. +|...|=.=....|..-|+.++.+
T Consensus 168 ~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 168 TDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BE
T ss_pred EECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeE
Confidence 2 1 234556665 444444444555666667766653
No 384
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.98 E-value=0.46 Score=42.05 Aligned_cols=155 Identities=7% Similarity=0.035 Sum_probs=89.9
Q ss_pred cceEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-----CeE
Q 021453 31 IRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-----ELL 103 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l 103 (312)
.++..++|.- |.+.++|.- .+|.+++=|-.. .+.-+.|..+.|.|-+ .+|
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~v----------------------iGqFEhV~GlsW~P~~~~~~paLL 76 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSKV----------------------IGQFEHVHGLSWAPPCTADTPALL 76 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCccE----------------------eeccceeeeeeecCcccCCCCceE
Confidence 3688899975 536666653 344444332221 2334678999999964 267
Q ss_pred EEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC-Cce--eeEEEEecCCCCEEEEeccCceEEEEecc--
Q 021453 104 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQT--VKGVNFFGPNDEYVMSGSDCGHLFIWKKK-- 178 (312)
Q Consensus 104 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-- 178 (312)
|.-..+.|.+|.+.... ..+.+.+.....+.. +-+ -..+.| +|....|+.-.....=.+++..
T Consensus 77 AVQHkkhVtVWqL~~s~-----------~e~~K~l~sQtcEi~e~~pvLpQGCVW-HPk~~iL~VLT~~dvSV~~sV~~d 144 (671)
T PF15390_consen 77 AVQHKKHVTVWQLCPST-----------TERNKLLMSQTCEIREPFPVLPQGCVW-HPKKAILTVLTARDVSVLPSVHCD 144 (671)
T ss_pred EEeccceEEEEEeccCc-----------cccccceeeeeeeccCCcccCCCcccc-cCCCceEEEEecCceeEeeeeeeC
Confidence 77779999999986321 001122222221111 011 234567 8988888766554443455544
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCC
Q 021453 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMP 221 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~-~~d~~i~iwd~~~ 221 (312)
+.+....++ ..+.|.|.+|.+||+.|+.+ +..=.-++||-..
T Consensus 145 ~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 145 SSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 233334443 45789999999999875444 4445678898443
No 385
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.93 E-value=1.2 Score=39.84 Aligned_cols=193 Identities=10% Similarity=0.090 Sum_probs=101.7
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccE--EEEEEccCCCeEEEecCCcEEEEEcCCCcC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI--TGLAYSNTSELLISYNDELVYLFEKNMGLG 121 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 121 (312)
..++.++.++.+.-.|..+++.....+...... . ....+ ..++...++.+++...++.|+-+|..++
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--------~-~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG-- 130 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPAD--------R-GCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETG-- 130 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCcc--------c-cccccccCCcEEccCCeEEEecCCCeEEEEECCCC--
Confidence 356777788999999999988543322111100 0 00000 0111111245555567999999999887
Q ss_pred CCCCcCCcccccCCCCCceEecccC--Cc--eeeEEEEecCCCCEEEEec---------cCceEEEEeccCCeeEEEeec
Q 021453 122 PSPLSLSPEDLQKREEPQVYSGHRN--SQ--TVKGVNFFGPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~v~~v~~~s~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~ 188 (312)
+.+..+..... .. ......+ . +..++.++ .++.|..+|..+|+.+-.+..
T Consensus 131 --------------~~~W~~~~~~~~~~~~~i~ssP~v-~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 131 --------------KQVWKFGNNDQVPPGYTMTGAPTI-V--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred --------------CEeeeecCCCCcCcceEecCCCEE-E--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 45444432211 00 0111122 1 23444443 468899999999987766543
Q ss_pred Ccc--------------------ce-EEEEEcCCCCeEEEEeCCC------------------cEEEccCCCCCC---CC
Q 021453 189 DRH--------------------VV-NQLEPHPHIPMFATCGIEK------------------TVKLWAPMPTDF---PP 226 (312)
Q Consensus 189 ~~~--------------------~v-~~v~~~p~~~~l~t~~~d~------------------~i~iwd~~~~~~---~~ 226 (312)
... .| ...++.+.+..++.++.++ .|.-.|+.+++. ..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 211 01 1234445556666666554 688888887763 11
Q ss_pred CCCCh--------hhhhhhhccCCCC---ceeEEecCCceEEEEEecccC
Q 021453 227 LPDNA--------EKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 227 ~~~~~--------~~~~~~~~~~~~~---~~l~s~~~d~~i~i~~~~~~~ 265 (312)
...+. ..++... ...++ ..++.++.++.+..+|..+++
T Consensus 274 ~~~~~~~~~~~~s~p~~~~~-~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 274 TTPHDLWDYDGPNQPSLADI-KPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred CCCCCCcccccCCCCeEEec-cccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 11111 1111100 00112 257778889999999887763
No 386
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.90 E-value=0.17 Score=39.29 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=66.5
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEE--ccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021453 34 NAIVIDPRNPNYFAVGGSDEYARVYD--IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 110 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~ 110 (312)
+.++|+.+...+.++-+.+-+|.-|| ..++.+.+.- .+ |..+..........-.++...+|.+.+++ +.++
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~----~i--~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRK----VI--FDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcc----ee--EEeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence 46888887756667778888997787 6676643210 00 00100000001111234445677766665 7999
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021453 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
|..+|..++ +.++.+.-.... +++++|--++-..+++
T Consensus 235 V~~~dp~tG----------------K~L~eiklPt~q--itsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 235 VQKVDPTTG----------------KILLEIKLPTPQ--ITSCCFGGKNLDILYV 271 (310)
T ss_pred EEEECCCCC----------------cEEEEEEcCCCc--eEEEEecCCCccEEEE
Confidence 999999998 788888877755 9999994444444443
No 387
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.81 E-value=0.047 Score=29.90 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCC--cEEEEEeCCCeEEEEEccC
Q 021453 32 RLNAIVIDPRNP--NYFAVGGSDEYARVYDIRK 62 (312)
Q Consensus 32 ~v~~~~~~p~~~--~~l~~~~~d~~i~iwd~~~ 62 (312)
.|.+++|+|... .+|+.+-.-+.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999998664 6888888889999999995
No 388
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.78 E-value=0.11 Score=40.71 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=52.0
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcC
Q 021453 38 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKN 117 (312)
Q Consensus 38 ~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~ 117 (312)
+...+ .++++-+.+|.+++||+.+++.......-.|+-.... ..-......|..+..+.+|.-+++-++|..+.|+..
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 34455 6788889999999999999886433211011100000 000035677899999999988888778889999875
Q ss_pred C
Q 021453 118 M 118 (312)
Q Consensus 118 ~ 118 (312)
.
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 4
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.74 E-value=0.65 Score=39.80 Aligned_cols=155 Identities=10% Similarity=0.070 Sum_probs=71.5
Q ss_pred cCCCCcEEEEE--eC----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-----
Q 021453 39 DPRNPNYFAVG--GS----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----- 107 (312)
Q Consensus 39 ~p~~~~~l~~~--~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----- 107 (312)
-|+| ++++++ .. -|-+.++|-++.++....+.+.. ...--..+-|.|..+.++|++
T Consensus 138 lp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~------------~~~~gYDfw~qpr~nvMiSSeWg~P~ 204 (461)
T PF05694_consen 138 LPDG-RIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG------------PQPFGYDFWYQPRHNVMISSEWGAPS 204 (461)
T ss_dssp -SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T------------T------EEEETTTTEEEE-B---HH
T ss_pred cCCc-cEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC------------CCCCCCCeEEcCCCCEEEEeccCChh
Confidence 3667 677664 22 24577778776654433221111 122234556666555555543
Q ss_pred ----------------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE-ecCCCCEEEE-eccC
Q 021453 108 ----------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMS-GSDC 169 (312)
Q Consensus 108 ----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~s~~~~~l~~-~~~d 169 (312)
...+.+||+.+. +.++++.--........|.| +.|+..+=++ +...
T Consensus 205 ~~~~Gf~~~d~~~~~yG~~l~vWD~~~r----------------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLs 268 (461)
T PF05694_consen 205 MFEKGFNPEDLEAGKYGHSLHVWDWSTR----------------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALS 268 (461)
T ss_dssp HHTT---TTTHHHH-S--EEEEEETTTT----------------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--
T ss_pred hcccCCChhHhhcccccCeEEEEECCCC----------------cEeeEEecCCCCCceEEEEecCCCCccceEEEEecc
Confidence 234888888876 77777764433233556666 3555555333 3345
Q ss_pred ceEEEEec-cCCe----eEEEeecC-----------------ccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCC
Q 021453 170 GHLFIWKK-KGGK----LVRLMVGD-----------------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPT 222 (312)
Q Consensus 170 g~v~iwd~-~~~~----~~~~~~~~-----------------~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~~~ 222 (312)
.+|..|-- ..++ .+..+... ..-|+++..|.+.++|..++ .+|.||.||+...
T Consensus 269 s~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 269 SSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 56665543 3332 22222110 23578999999999976666 8999999998764
No 390
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.73 E-value=0.98 Score=37.54 Aligned_cols=165 Identities=10% Similarity=0.076 Sum_probs=87.8
Q ss_pred CCCCcEEEEEeCCCeEEEEEcc-CCeecCCCCCCCCcccccccccccCCCccEE-EEEEccCC-CeEEEecCCcEEEEEc
Q 021453 40 PRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHIT-GLAYSNTS-ELLISYNDELVYLFEK 116 (312)
Q Consensus 40 p~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~-~~l~s~~d~~i~iwd~ 116 (312)
|.+++-|.+-+.||++.-..+. .++.. + ....++....+++. .-++...+ .++..+-+|.|+-.|+
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---------~--~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEA---------Q--KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEE---------E--EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEe---------E--eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 4444678888999999999987 44421 0 01111122222222 22344433 4666677888888888
Q ss_pred CCCcCCCCCcCCcccccCCCC-CceEecccCCceeeEEEEecCCCCEEEEecc----------CceEEEEeccCCeeEEE
Q 021453 117 NMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----------CGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~ 185 (312)
...... -...|.+.+-.. .... ..+. -.-+++ ++..+.|++.-. ...|.++|+.+++.+..
T Consensus 213 sg~~~~---~~~~~~~~t~~e~~~~W--rPGG--~Q~~A~-~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R 284 (342)
T PF06433_consen 213 SGDSAK---FGKPWSLLTDAEKADGW--RPGG--WQLIAY-HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR 284 (342)
T ss_dssp TTSSEE---EEEEEESS-HHHHHTTE--EE-S--SS-EEE-ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE
T ss_pred cCCccc---ccCcccccCccccccCc--CCcc--eeeeee-ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE
Confidence 664100 000111000000 0000 0011 233566 444444443222 12488899999999998
Q ss_pred eecCccceEEEEEcCCCC-eEEEEe-CCCcEEEccCCCCCC
Q 021453 186 MVGDRHVVNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTDF 224 (312)
Q Consensus 186 ~~~~~~~v~~v~~~p~~~-~l~t~~-~d~~i~iwd~~~~~~ 224 (312)
+.. ..++.++..+.+.+ .|++.+ .++.|.+||..++++
T Consensus 285 i~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 285 IPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 874 24677899988765 565544 689999999999864
No 391
>PHA03098 kelch-like protein; Provisional
Probab=95.64 E-value=0.81 Score=41.36 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=36.3
Q ss_pred CCCEEEEeccC------ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC--------CcEEEccCCCC
Q 021453 159 NDEYVMSGSDC------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPT 222 (312)
Q Consensus 159 ~~~~l~~~~~d------g~v~iwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~l~t~~~d--------~~i~iwd~~~~ 222 (312)
+++..+.|+.+ ..+..||+.+.+.... +....... ++ ..-++..++.||.+ ..+.+||+.+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 56666777632 4588899877654321 11111111 12 22255666666642 23888999887
Q ss_pred CCCCC
Q 021453 223 DFPPL 227 (312)
Q Consensus 223 ~~~~~ 227 (312)
+...+
T Consensus 467 ~W~~~ 471 (534)
T PHA03098 467 KWTEL 471 (534)
T ss_pred ceeeC
Confidence 75444
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=0.96 Score=36.54 Aligned_cols=170 Identities=12% Similarity=0.084 Sum_probs=98.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
...|.++.|+|+. +.|.+......-.++=...|+++..+... + -...-.|++..++++.++- .+
T Consensus 85 ~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~-------------g-~~DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 85 TANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLT-------------G-FSDPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred cccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEeccc-------------c-cCChhHeEEecCCEEEEEehhc
Confidence 4459999999998 55555555566666666667765443211 1 1223467777788888886 49
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-e--EEE
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-L--VRL 185 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~--~~~ 185 (312)
..++++.+.....-. ..... + -.+....... .-.-.++| ++..+.|+.+-+..-+.||....+. . +..
T Consensus 150 ~~l~~~~vd~~t~~~----~~~~~-~-i~L~~~~k~N--~GfEGlA~-d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~ 220 (316)
T COG3204 150 RALYLFTVDADTTVI----SAKVQ-K-IPLGTTNKKN--KGFEGLAW-DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA 220 (316)
T ss_pred ceEEEEEEcCCccEE----eccce-E-EeccccCCCC--cCceeeec-CCCCceEEEEEccCCcEEEEEecCCccccccc
Confidence 999998876541000 00000 0 0011111112 22788999 8999888888888877777765332 1 111
Q ss_pred eecCc-------cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC
Q 021453 186 MVGDR-------HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 186 ~~~~~-------~~v~~v~~~p~~~~-l~t~~~d~~i~iwd~~~~~ 223 (312)
...+. ..|+++.|++.... ++-+.+++.+.-.|.....
T Consensus 221 ~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 221 SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred ccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 11111 24677888875544 5555677777777766553
No 393
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.7 Score=40.32 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 111 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 111 (312)
.-.|++-..+| .+++|+.+|.||+||- .+. ..+..+.+-..+|..+..+.+|+.|++..+..+
T Consensus 432 nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~--------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyL 494 (644)
T KOG2395|consen 432 NFSCFATTESG--YIVVGSLKGDIRLYDR-IGR--------------RAKTALPGLGDAIKHVDVTADGKWILATCKTYL 494 (644)
T ss_pred ccceeeecCCc--eEEEeecCCcEEeehh-hhh--------------hhhhcccccCCceeeEEeeccCcEEEEecccEE
Confidence 34566666665 8999999999999997 443 334444667889999999999998888878888
Q ss_pred EEEEcCC
Q 021453 112 YLFEKNM 118 (312)
Q Consensus 112 ~iwd~~~ 118 (312)
.+-++.-
T Consensus 495 lLi~t~~ 501 (644)
T KOG2395|consen 495 LLIDTLI 501 (644)
T ss_pred EEEEEec
Confidence 8877643
No 394
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.45 E-value=1.2 Score=36.82 Aligned_cols=191 Identities=13% Similarity=0.068 Sum_probs=100.4
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEE
Q 021453 35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 114 (312)
Q Consensus 35 ~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iw 114 (312)
+-.|.++...++.+--..+.|.-|+..+++.. . ..+...+.++..-..+..|+++..+ ++++
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~----------~-------~~~p~~~~~~~~~d~~g~Lv~~~~g-~~~~ 90 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR----------V-------FPSPGGFSSGALIDAGGRLIACEHG-VRLL 90 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE----------E-------EECCCCcccceeecCCCeEEEEccc-cEEE
Confidence 34577777557777778888999998866411 1 1112233444443344455554332 3444
Q ss_pred EcCCCcCCCCCcCCcccccCCCCCceE----ecccCCceeeEEEEecCCCCEEEEecc-----------CceEEEEeccC
Q 021453 115 EKNMGLGPSPLSLSPEDLQKREEPQVY----SGHRNSQTVKGVNFFGPNDEYVMSGSD-----------CGHLFIWKKKG 179 (312)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~~s~~~~~l~~~~~-----------dg~v~iwd~~~ 179 (312)
+...+ .....+ .+... ...+.+.. .|+|.+.++... -|.|+-+|. .
T Consensus 91 ~~~~~----------------~~~t~~~~~~~~~~~-~r~ND~~v-~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~ 151 (307)
T COG3386 91 DPDTG----------------GKITLLAEPEDGLPL-NRPNDGVV-DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D 151 (307)
T ss_pred eccCC----------------ceeEEeccccCCCCc-CCCCceeE-cCCCCEEEeCCCccccCccccCCcceEEEEcC-C
Confidence 54433 111111 11111 12456666 788877665443 233555554 4
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC--CCCCC-----CCCChhhhhhhhccCCCCceeEEec
Q 021453 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP--TDFPP-----LPDNAEKIMKANKQGREDHSRITLT 251 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~l~s~~ 251 (312)
+..++.+..+-..-+.++|||+++.|..+. ..+.|.-|++.. ..+.. ..........-.....++.+.++.-
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~ 231 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV 231 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc
Confidence 666666665555668899999998876665 457888887653 21110 0111111212222334555654444
Q ss_pred CC-ceEEEEEec
Q 021453 252 PD-VIMHVLRLQ 262 (312)
Q Consensus 252 ~d-~~i~i~~~~ 262 (312)
.+ +.|.+|+-+
T Consensus 232 ~~g~~v~~~~pd 243 (307)
T COG3386 232 WGGGRVVRFNPD 243 (307)
T ss_pred cCCceEEEECCC
Confidence 44 377888755
No 395
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=1.1 Score=38.61 Aligned_cols=121 Identities=11% Similarity=0.088 Sum_probs=71.6
Q ss_pred cCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021453 85 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 163 (312)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l 163 (312)
....++|.++.|++|.+.||.- .+..|.+++..... . +.....+.......|....| +.+ .-+
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~------------~--~l~~~~~ck~k~~~IlGF~W-~~s-~e~ 126 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN------------S--QLEYTQECKTKNANILGFCW-TSS-TEI 126 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc------------h--hhHHHHHhccCcceeEEEEE-ecC-eeE
Confidence 3446799999999999999995 69999999984320 0 11111121222233888888 444 444
Q ss_pred EEeccCceEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEE-EEe-CCCcEEEccCCCC
Q 021453 164 MSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFA-TCG-IEKTVKLWAPMPT 222 (312)
Q Consensus 164 ~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~-t~~-~d~~i~iwd~~~~ 222 (312)
+.-+..| +-+|-... ...++..+.|+..|+-..|.|+.+.++ +.+ ..+++.=+-++++
T Consensus 127 A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 4444333 34444332 334555667888888889999988733 333 3444444444443
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.39 E-value=0.48 Score=44.02 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=50.3
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccC---------Cee---EEEee--------cCccceEEEEEcCCC---CeE
Q 021453 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---------GKL---VRLMV--------GDRHVVNQLEPHPHI---PMF 205 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---------~~~---~~~~~--------~~~~~v~~v~~~p~~---~~l 205 (312)
.|..+.. +++|.+|+..+..|.+.+.=.+. |+. .+.+. .+...|..+.|||.+ .+|
T Consensus 86 ~v~~i~~-n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISL-NPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEE-CCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3888988 99999999888866554432221 111 12221 233578899999974 678
Q ss_pred EEEeCCCcEEEccCCC
Q 021453 206 ATCGIEKTVKLWAPMP 221 (312)
Q Consensus 206 ~t~~~d~~i~iwd~~~ 221 (312)
+.-..|+++|+||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 8888999999999864
No 397
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.18 E-value=0.61 Score=40.21 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=58.9
Q ss_pred cCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC---
Q 021453 85 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND--- 160 (312)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~--- 160 (312)
......+.+++.+|.+++.|.+ +-|.|.++|+.++ ..++.++|.++.. +.-+.......
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----------------~vvrmWKGYRdAq-c~wi~~~~~~~~~~ 366 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG----------------IVVRMWKGYRDAQ-CGWIEVPEEGDRDR 366 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----------------hhhhhhccCccce-EEEEEeeccccccc
Confidence 4455678899999999888887 4899999999987 6777777776531 11111101111
Q ss_pred -------------C-EEEEeccCceEEEEeccCCeeEEEeec
Q 021453 161 -------------E-YVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 161 -------------~-~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
. +++-+-.-|.|-||.+++|..+..+..
T Consensus 367 ~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 367 SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1 233456688899999998888776653
No 398
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.10 E-value=1.8 Score=36.70 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCcEEEEEeCCCe--EEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 109 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~ 109 (312)
-+.=+|.++|.++|..+..||. +.+.|+.+++..+.. .+.........++|+.+.++-- ...
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT---------------dg~g~~~~g~~~s~~~~~~~Yv~~~~ 102 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT---------------DGPGDNTFGGFLSPDDRALYYVKNGR 102 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------------------SS-B-TTT-EE-TTSSEEEEEETTT
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc---------------cCCCCCccceEEecCCCeEEEEECCC
Confidence 3345677888666666665654 566677777633211 1111112234567887766554 567
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe-cCCCCEEEEec---------------------
Q 021453 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGS--------------------- 167 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-s~~~~~l~~~~--------------------- 167 (312)
.|+-.|+.+. +....+...... +-...|. +.++..++-.-
T Consensus 103 ~l~~vdL~T~----------------e~~~vy~~p~~~--~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 103 SLRRVDLDTL----------------EERVVYEVPDDW--KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp EEEEEETTT------------------EEEEEE--TTE--EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred eEEEEECCcC----------------cEEEEEECCccc--ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 8888899886 444445444432 3333442 34455443221
Q ss_pred -cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC-----cEEEccCCC
Q 021453 168 -DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMP 221 (312)
Q Consensus 168 -~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~-----~i~iwd~~~ 221 (312)
-...|.-.|+.+|+....+. -...+..+.|+|....+++=+.+| .-|||-+++
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 13356667788887655554 345678899999887755554333 136676543
No 399
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.91 E-value=0.03 Score=51.40 Aligned_cols=158 Identities=12% Similarity=0.097 Sum_probs=84.1
Q ss_pred ceEEEEEcC---CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEE-----------Ec
Q 021453 32 RLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA-----------YS 97 (312)
Q Consensus 32 ~v~~~~~~p---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~ 97 (312)
.+.-+.|.| +. .++..+-.++.+++.+..... ..++.+|...+..++ .+
T Consensus 182 ~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~----------------~~l~rsHs~~~~d~a~~~~g~~~l~~lS 244 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRAL----------------RSLFRSHSQRVTDMAFFAEGVLKLASLS 244 (1283)
T ss_pred Ccceeeeccccccc-ceeeeccCCCceeEeeechHH----------------HHHHHhcCCCcccHHHHhhchhhheeeC
Confidence 345566665 44 577778888999988776432 112233544444332 68
Q ss_pred cCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC--------CCCEEEEec-
Q 021453 98 NTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--------NDEYVMSGS- 167 (312)
Q Consensus 98 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~--------~~~~l~~~~- 167 (312)
|||+.++.. .||.++.|.+.-....+. .++...+.|.....|+.+ |+.. .-.++++++
T Consensus 245 pDGtv~a~a~~dG~v~f~Qiyi~g~~~~-----------rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 245 PDGTVFAWAISDGSVGFYQIYITGKIVH-----------RCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred CCCcEEEEeecCCccceeeeeeeccccH-----------hhhhccCCCCCCCceeee-eccccccCCccceeEEEEeccc
Confidence 899888875 688888877632211111 333444444422223333 2111 112344444
Q ss_pred cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe------------EEEEeCCCcEEEccCCC
Q 021453 168 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM------------FATCGIEKTVKLWAPMP 221 (312)
Q Consensus 168 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~------------l~t~~~d~~i~iwd~~~ 221 (312)
....+++|.....+|+..+ -...|..|. -+++.. +++-+.+++|.+|.-+.
T Consensus 313 ~nre~k~w~~a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred CCcceeEeeccchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 4567899988777776211 123344443 222321 33456788999997443
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.83 E-value=0.024 Score=51.96 Aligned_cols=163 Identities=10% Similarity=0.030 Sum_probs=90.1
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC--CeecCCCCCCCCcccccccccccCCCccEEEEEEcc---CCCe
Q 021453 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TSEL 102 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~ 102 (312)
|.++.|-.+.|-......++ -.-|.+.+|++.- |++... ...+........+.-+.|.| +.-+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~----------l~v~~~~p~gs~~~~V~wcp~~~~~~~ 197 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQ----------LEVTPITPYGSDPQLVSWCPIAVNKVY 197 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccc----------eEEeecCcCCCCcceeeecccccccce
Confidence 44667777777432212222 3447788999863 321110 11111122233445566666 3335
Q ss_pred EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE----------ecCCCCEEEEeccCce
Q 021453 103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF----------FGPNDEYVMSGSDCGH 171 (312)
Q Consensus 103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~----------~s~~~~~l~~~~~dg~ 171 (312)
+..+ .++.+++.+.... ....+.+|... +..++| .+|||..++.++.||.
T Consensus 198 ic~~~~~~~i~lL~~~ra-----------------~~~l~rsHs~~--~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 198 ICYGLKGGEIRLLNINRA-----------------LRSLFRSHSQR--VTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred eeeccCCCceeEeeechH-----------------HHHHHHhcCCC--cccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 5555 4888888776543 33445555433 333332 2899999999999999
Q ss_pred EEEEecc-----CCeeEEEeecCcc-ceEEEEEcCCC---------CeEEEEe-CCCcEEEccCCC
Q 021453 172 LFIWKKK-----GGKLVRLMVGDRH-VVNQLEPHPHI---------PMFATCG-IEKTVKLWAPMP 221 (312)
Q Consensus 172 v~iwd~~-----~~~~~~~~~~~~~-~v~~v~~~p~~---------~~l~t~~-~d~~i~iwd~~~ 221 (312)
+++|.+. .-.++..++.|.+ +-.|.-++.+. .++++++ ....+++|....
T Consensus 259 v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 259 VGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred cceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 9888753 2345667777763 33333333322 1344444 556799998543
No 401
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.68 E-value=1.3 Score=38.47 Aligned_cols=112 Identities=8% Similarity=0.003 Sum_probs=66.6
Q ss_pred cEEEEEEccCCCeEEEe-c-CC----cEEEEEcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCE
Q 021453 90 HITGLAYSNTSELLISY-N-DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEY 162 (312)
Q Consensus 90 ~i~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~ 162 (312)
.+....++|+|++++.+ + .| .++++|+.++ +.+. .+.... ...+.| .++++.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg----------------~~l~d~i~~~~----~~~~~W-~~d~~~ 183 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG----------------KFLPDGIENPK----FSSVSW-SDDGKG 183 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT----------------EEEEEEEEEEE----SEEEEE-CTTSSE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC----------------cCcCCcccccc----cceEEE-eCCCCE
Confidence 34467899999977754 3 44 4999999887 3332 222111 233888 888777
Q ss_pred EEEecc-----------CceEEEEeccCCee--EEEeecCccc--eEEEEEcCCCCeEEEE-eC--C-CcEEEccCCCC
Q 021453 163 VMSGSD-----------CGHLFIWKKKGGKL--VRLMVGDRHV--VNQLEPHPHIPMFATC-GI--E-KTVKLWAPMPT 222 (312)
Q Consensus 163 l~~~~~-----------dg~v~iwd~~~~~~--~~~~~~~~~~--v~~v~~~p~~~~l~t~-~~--d-~~i~iwd~~~~ 222 (312)
|+.... ...|+.|.+.+... ...+...... ...+..++++++++.. .. + ..+.+.++...
T Consensus 184 ~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 184 FFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 654432 23477888776543 2344433322 5678899999995543 32 2 34777777764
No 402
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.67 E-value=1.8 Score=34.59 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 110 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~ 110 (312)
-.-.+++..++ .++++.-.++.+.++++........ ...+..+.. .+...++..+-.++|.|.++.|... ...-
T Consensus 66 D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~---~~~~~~~~l-~~~~~~N~G~EGla~D~~~~~L~v~kE~~P 140 (248)
T PF06977_consen 66 DYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLD---RADVQKISL-GFPNKGNKGFEGLAYDPKTNRLFVAKERKP 140 (248)
T ss_dssp SEEEEEE-STT-EEEEEETTTTEEEEEEE----TT-----EEEEEEEE----S---SS--EEEEEETTTTEEEEEEESSS
T ss_pred CceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccc---hhhceEEec-ccccCCCcceEEEEEcCCCCEEEEEeCCCC
Confidence 35567776655 5555555688999988853320000 000011111 1112355668999999987754444 4555
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc
Q 021453 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 190 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 190 (312)
..+|.+...... ..+...... ......... ..+.+++++...+++++.......|..+| .+|+++..+.-..
T Consensus 141 ~~l~~~~~~~~~--~~~~~~~~~---~~~~~~~~~--~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~ 212 (248)
T PF06977_consen 141 KRLYEVNGFPGG--FDLFVSDDQ---DLDDDKLFV--RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR 212 (248)
T ss_dssp EEEEEEESTT-S--S--EEEE-H---HHH-HT--S--S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST
T ss_pred hhhEEEccccCc--cceeecccc---cccccccee--ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC
Confidence 556655431000 000000000 000000111 22788888666778888889999999999 5688776654222
Q ss_pred ---------cceEEEEEcCCCCeEEEEeCCCcEEE
Q 021453 191 ---------HVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 191 ---------~~v~~v~~~p~~~~l~t~~~d~~i~i 216 (312)
...-.|+|.++|++.+++ +-+..++
T Consensus 213 g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 213 GFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp TGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred cccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 246789999998776554 4444443
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.64 E-value=0.26 Score=38.64 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=53.4
Q ss_pred cCCCCEEEEeccCceEEEEeccCCeeEEEe-------e-------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------V-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------~-------~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
...+++|++-+.+|.+++||+.+++.+..- . .....|..+..+.+|.-+++-+ +|....|+..-+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 457889999999999999999988764321 1 2446788888998888777765 588999998877
Q ss_pred CCCCC
Q 021453 223 DFPPL 227 (312)
Q Consensus 223 ~~~~~ 227 (312)
....+
T Consensus 98 ~W~~v 102 (219)
T PF07569_consen 98 CWIRV 102 (219)
T ss_pred eeEEe
Confidence 65443
No 404
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=0.57 Score=44.67 Aligned_cols=122 Identities=11% Similarity=-0.098 Sum_probs=75.0
Q ss_pred ccEEEEEEccCCCeEEE--e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc----cCCceeeEEEEecCCC-
Q 021453 89 IHITGLAYSNTSELLIS--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH----RNSQTVKGVNFFGPND- 160 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~s~~~- 160 (312)
-.+..+...+|+...+. . .+-.|+.||++.-...... ..+.+..+ .......++.| .|.-
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~-----------~~~pl~~s~ts~ek~vf~~~~~w-nP~vp 168 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE-----------TTVPLKNSATSFEKPVFQLKNVW-NPLVP 168 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-----------hccccccccchhccccccccccc-cCCcc
Confidence 45566667778764443 3 3557899999764211100 01111111 11122566777 5543
Q ss_pred CEEEEeccCceEEEEeccCCe-eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 161 EYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 161 ~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
-..+.+..|+.|++..+.... .+..+. ....+++++|+|.|+.++.|-..|++.-|....+.
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei 231 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI 231 (1405)
T ss_pred chhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccce
Confidence 335667778999888765332 233332 34578999999999999999999999999877664
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.52 E-value=2 Score=34.51 Aligned_cols=160 Identities=11% Similarity=0.017 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 110 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~ 110 (312)
.+.+.++++++..+.+....++.-.+|-...+. ....... ...+....|++++.+.+.. .+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--------------~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~ 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--------------PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG 88 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--------------cceeecc--CCccccccccCCCCEEEEEcCCCc
Confidence 688999999994344444233334444443332 1111111 2367778999998866665 4555
Q ss_pred EEEEE-cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec---cCceEEEEecc---CC---
Q 021453 111 VYLFE-KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK---GG--- 180 (312)
Q Consensus 111 i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~---~dg~v~iwd~~---~~--- 180 (312)
.+++. ...+. ..............|..+.+ +|+|..++... .++.|.+--+. .+
T Consensus 89 ~~~~~~~~~g~---------------~~~~~v~~~~~~~~I~~l~v-SpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~ 152 (253)
T PF10647_consen 89 VRVVRDSASGT---------------GEPVEVDWPGLRGRITALRV-SPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR 152 (253)
T ss_pred eEEEEecCCCc---------------ceeEEecccccCCceEEEEE-CCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence 55553 22220 11111111111014999999 99999887655 35777776532 22
Q ss_pred ---eeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEE-ccCCCCC
Q 021453 181 ---KLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKL-WAPMPTD 223 (312)
Q Consensus 181 ---~~~~~~~~~~~~v~~v~~~p~~~~l~t~~-~d~~i~i-wd~~~~~ 223 (312)
.+..........+.++.|.+++.+++.+. .++.+.. .......
T Consensus 153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~ 200 (253)
T PF10647_consen 153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGP 200 (253)
T ss_pred eeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCc
Confidence 11122222346789999999998866555 4443444 4444433
No 406
>PHA02790 Kelch-like protein; Provisional
Probab=94.36 E-value=3.3 Score=36.93 Aligned_cols=64 Identities=6% Similarity=-0.058 Sum_probs=35.1
Q ss_pred CCCEEEEeccCc---eEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021453 159 NDEYVMSGSDCG---HLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL 227 (312)
Q Consensus 159 ~~~~l~~~~~dg---~v~iwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~ 227 (312)
+++..+.|+.++ .+..||..+.+.... +.........+ .-++++.+.|+ .+.+||+.+.+...+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLI 430 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCCCcEeEc
Confidence 577777777543 467888876654321 11111111112 23566666663 577899988775443
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.33 E-value=1.2 Score=38.86 Aligned_cols=141 Identities=11% Similarity=0.137 Sum_probs=84.9
Q ss_pred EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--------CeEEEecCCcEEEEEc
Q 021453 45 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--------ELLISYNDELVYLFEK 116 (312)
Q Consensus 45 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~s~~d~~i~iwd~ 116 (312)
++..|....+++-.|++.|+++..+. -|.. + -+.|.|.. +-|+.-++..|.-.|.
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~---------------~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDP 544 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWD---------------LKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDP 544 (776)
T ss_pred EEecCCCcccceeeecccceeeeEee---------------cCCc-c-eeecCCchhHHhcCccceEEeecccceEEecc
Confidence 44456667778888888887553332 2222 2 45666643 2455556777766666
Q ss_pred CCCcCCCCCcCCcccccCCCCCce--EecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE
Q 021453 117 NMGLGPSPLSLSPEDLQKREEPQV--YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 194 (312)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 194 (312)
+-.. ..+.. ++.........+.. .....++++|+..|.|++||.-.......+++....|.
T Consensus 545 R~~g---------------NKi~v~esKdY~tKn~Fss~~--tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk 607 (776)
T COG5167 545 RARG---------------NKIKVVESKDYKTKNKFSSGM--TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIK 607 (776)
T ss_pred cccC---------------Cceeeeeehhccccccccccc--cccCceEEEecCCCceeeehhhcchhhhcCccccccee
Confidence 5421 11111 11111111123332 34567999999999999999654444555677778899
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEccCC
Q 021453 195 QLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 195 ~v~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
.+..+.+|+++++.+ ..++.+-|+.
T Consensus 608 ~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 608 HIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred eeEeecCCcEEEEee-cceEEEEecc
Confidence 999999999865555 3567676654
No 408
>PHA03098 kelch-like protein; Provisional
Probab=94.30 E-value=2 Score=38.92 Aligned_cols=67 Identities=7% Similarity=0.073 Sum_probs=36.8
Q ss_pred CCCEEEEeccC--------ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCC
Q 021453 159 NDEYVMSGSDC--------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD 223 (312)
Q Consensus 159 ~~~~l~~~~~d--------g~v~iwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~l~t~~~d-----~~i~iwd~~~~~ 223 (312)
++...+.|+.. ..+.+||..+.+.... +.........+.+ ++++++.|+.+ ..|.+||+.+..
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 45666666642 2388899887654322 1111111112222 66677777643 468888888776
Q ss_pred CCCC
Q 021453 224 FPPL 227 (312)
Q Consensus 224 ~~~~ 227 (312)
...+
T Consensus 515 W~~~ 518 (534)
T PHA03098 515 WTLF 518 (534)
T ss_pred EEec
Confidence 5443
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.20 E-value=3.3 Score=35.71 Aligned_cols=205 Identities=11% Similarity=0.104 Sum_probs=87.4
Q ss_pred cEEEE-EeCCCeEEEEEccCCeecCCCCCCCCccccccccccc-CCCccEEEEEEccCCCeEEEe-c--C----CcEEEE
Q 021453 44 NYFAV-GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISY-N--D----ELVYLF 114 (312)
Q Consensus 44 ~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~-~--d----~~i~iw 114 (312)
++|+. |-..+.|+|.|+.+.-- .+.-.....+..+.. ..-.....+..-|+|.+++++ + + |-+.++
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr-----~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPR-----KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TT-----S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred CcEEeeeeccCcEEEEECCCCCC-----CCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 44444 55789999999874320 000011111111111 111223334445788877774 2 3 237777
Q ss_pred EcCCCcCCCCCcCCcccccCCCCCceEecccC-CceeeEEEEecCCCCEEEEec--------------------cCceEE
Q 021453 115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGS--------------------DCGHLF 173 (312)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~s~~~~~l~~~~--------------------~dg~v~ 173 (312)
|-++. +.......... ...-...-| .|..+.+++.. ...++.
T Consensus 163 D~~tf----------------~v~g~We~~~~~~~~gYDfw~-qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~ 225 (461)
T PF05694_consen 163 DGETF----------------EVKGRWEKDRGPQPFGYDFWY-QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLH 225 (461)
T ss_dssp -TTT------------------EEEE--SB-TT------EEE-ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEE
T ss_pred cCccc----------------cccceeccCCCCCCCCCCeEE-cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEE
Confidence 76653 23222222111 112334444 66667666653 256899
Q ss_pred EEeccCCeeEEEeecCc--cceEEEEE--cCCCCe-EEEEeCCCcEEEccC-CCCC-----CCCCCCC------------
Q 021453 174 IWKKKGGKLVRLMVGDR--HVVNQLEP--HPHIPM-FATCGIEKTVKLWAP-MPTD-----FPPLPDN------------ 230 (312)
Q Consensus 174 iwd~~~~~~~~~~~~~~--~~v~~v~~--~p~~~~-l~t~~~d~~i~iwd~-~~~~-----~~~~~~~------------ 230 (312)
+||+.+.+.++++.... ..+..+.| .|+..+ ++.+-...+|-.|-- ..++ +..++..
T Consensus 226 vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~ 305 (461)
T PF05694_consen 226 VWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLK 305 (461)
T ss_dssp EEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGG
T ss_pred EEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccc
Confidence 99999999999887443 23556666 466666 555545555554432 3322 1111110
Q ss_pred ----hhhhhhhhccCCCCcee-EEecCCceEEEEEecccCcccee
Q 021453 231 ----AEKIMKANKQGREDHSR-ITLTPDVIMHVLRLQRRQTLAYR 270 (312)
Q Consensus 231 ----~~~~~~~~~~~~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~ 270 (312)
..++++....+.++++| ++.=-.|.++.+|+.....+...
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 12344555566666665 45667899999999876554443
No 410
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.03 E-value=0.22 Score=27.35 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=25.3
Q ss_pred cceEEEEEcCCCC---eEEEEeCCCcEEEccCCC
Q 021453 191 HVVNQLEPHPHIP---MFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 191 ~~v~~v~~~p~~~---~l~t~~~d~~i~iwd~~~ 221 (312)
+.|.++.|+|... +|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998654 677777789999999985
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=93.99 E-value=3.3 Score=34.90 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=84.1
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEE-EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVY-DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d 108 (312)
...+.++.+.|++ .+++++ ..|.+..- +-....+ .. ....-...++++.+.+++..++.+..
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g-~~G~i~~s~~~gg~tW-------------~~--~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVS-SRGNFYSTWEPGQTAW-------------TP--HQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred cceEEEEEECCCC-eEEEEe-CCceEEEEcCCCCCeE-------------EE--eeCCCcccceeeeEcCCCCEEEEecC
Confidence 4568889999976 455554 45655431 2111111 11 11223467889999999998888877
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee-
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV- 187 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~- 187 (312)
|.+++=....+. +.+... .........+..+.+ .+++..+++ +.+|.+. .....++.-....
T Consensus 235 G~~~~~s~d~G~-------------sW~~~~-~~~~~~~~~l~~v~~-~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~ 297 (334)
T PRK13684 235 GQIRFNDPDDLE-------------SWSKPI-IPEITNGYGYLDLAY-RTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPV 297 (334)
T ss_pred CEEEEccCCCCC-------------cccccc-CCccccccceeeEEE-cCCCCEEEE-cCCCeEE-EeCCCCCCCeECCc
Confidence 776532233220 001111 110001122778888 777775554 4567664 3445454433332
Q ss_pred --cCccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021453 188 --GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 188 --~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
.-....+.+.|..+++.+++| ..|.|--|+-
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 298 GEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred CCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 122357788888777776655 5788877764
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.98 E-value=4.4 Score=37.94 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=53.0
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe------cccCCceeeEEEEecCC---
Q 021453 89 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS------GHRNSQTVKGVNFFGPN--- 159 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~v~~~s~~--- 159 (312)
-.|..|..+|+|++++-.+...|.|..+....+.... + .+....-..+.+. .......|..+.| +|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~-~--~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~W-hP~s~~ 160 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGE-F--EDGKKEINCRTVPVDERFFTSNSSLEIKQVRW-HPWSES 160 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCcccc-c--cCCCcceeEEEEEechhhccCCCCceEEEEEE-cCCCCC
Confidence 4688999999999888877677777776543211100 0 0000000111111 1111234899999 665
Q ss_pred CCEEEEeccCceEEEEeccC
Q 021453 160 DEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~ 179 (312)
+..|+.-+.|+++++||+..
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCeEEEEecCCEEEEEecCC
Confidence 58899999999999999864
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.94 E-value=0.75 Score=43.96 Aligned_cols=152 Identities=7% Similarity=-0.005 Sum_probs=88.4
Q ss_pred cceEEEEEcCCCCcEEEE--EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEEe
Q 021453 31 IRLNAIVIDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISY 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~ 106 (312)
.++..+...+++ ...++ .+.+..|..||+++-....... . ..++.............++.|+|.-. .++..
T Consensus 101 ~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~---~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 101 IPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYET-T---VPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred ccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhh-c---cccccccchhccccccccccccCCccchhhhhc
Confidence 355566666665 33333 3444578889998654211100 1 11111111122234456788988764 33344
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|+.|++..+.... .....+. -. ..+++++| +|.|++++.|-..|++.-|-.. .+....+
T Consensus 176 ~dlsl~V~~~~~~~---------------~~v~s~p-~t--~~~Tav~W-SprGKQl~iG~nnGt~vQy~P~-leik~~i 235 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLA---------------QNVTSFP-VT--NSQTAVLW-SPRGKQLFIGRNNGTEVQYEPS-LEIKSEI 235 (1405)
T ss_pred cccchhhhhhhhhh---------------hhhcccC-cc--cceeeEEe-ccccceeeEecCCCeEEEeecc-cceeecc
Confidence 79999988775320 1222222 12 23899999 9999999999999999888754 4444444
Q ss_pred ecC----ccceEEEEEcCCCCeEEE
Q 021453 187 VGD----RHVVNQLEPHPHIPMFAT 207 (312)
Q Consensus 187 ~~~----~~~v~~v~~~p~~~~l~t 207 (312)
... ...|.+|+|-....+++.
T Consensus 236 p~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 236 PEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cCCCcCCCcceeEEEEecceeEEEE
Confidence 321 367899999777666443
No 414
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.82 E-value=3.7 Score=34.91 Aligned_cols=155 Identities=12% Similarity=0.160 Sum_probs=71.0
Q ss_pred ceEEEEEcCCCCcEEEEEeC---CC-eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021453 32 RLNAIVIDPRNPNYFAVGGS---DE-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~---d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
-+.-+-|+|..+.+|+-+.+ +. .-|||-+.+..- ... .... ......+.---|.|+|..+.- +
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--------~~~--~v~~--~~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--------NVK--KVHR--RMEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------E--ESS-----TTEEEEEEEE-TTSS-EEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--------cce--eeec--CCCCcccccccccCCCCEEEEEe
Confidence 36778999988777777543 33 236776654320 000 0000 111344555568999973332 2
Q ss_pred --c---CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC------------
Q 021453 107 --N---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC------------ 169 (312)
Q Consensus 107 --~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d------------ 169 (312)
. +..|.-+|+.++ +....... .. -....- ++++++++-=+.|
T Consensus 257 ~~~~~~~~~i~~~d~~t~----------------~~~~~~~~--p~--~~H~~s-s~Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 257 YTPGGQDFWIAGYDPDTG----------------ERRRLMEM--PW--CSHFMS-SPDGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp EETTT--EEEEEE-TTT------------------EEEEEEE---S--EEEEEE--TTSSEEEEEE--------------
T ss_pred ecCCCCceEEEeeCCCCC----------------CceEEEeC--Cc--eeeeEE-cCCCCEEEecCCCCCccccccccce
Confidence 1 334666677665 22221111 11 223333 7888877643332
Q ss_pred ----ceEEEEeccCCeeEEEe---------ecCcc-ceEEEEEcCCCCe-EEEEeCCCcEEEccC
Q 021453 170 ----GHLFIWKKKGGKLVRLM---------VGDRH-VVNQLEPHPHIPM-FATCGIEKTVKLWAP 219 (312)
Q Consensus 170 ----g~v~iwd~~~~~~~~~~---------~~~~~-~v~~v~~~p~~~~-l~t~~~d~~i~iwd~ 219 (312)
..|+++++..++..... .++.. .=-.+.|+||+++ |.++...|...||-+
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 25667787766543211 11111 1135789999998 555567887777643
No 415
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=1.1 Score=39.32 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=49.2
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEe---------ccCCeeEE---Eee------cC--ccceEEEEEcCCC---CeEE
Q 021453 150 VKGVNFFGPNDEYVMSGSDCGHLFIWK---------KKGGKLVR---LMV------GD--RHVVNQLEPHPHI---PMFA 206 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd---------~~~~~~~~---~~~------~~--~~~v~~v~~~p~~---~~l~ 206 (312)
|..+.. ++.|..++..+.+|.+.++= +..|+... ++. .. .-.+..++|||+. ..|.
T Consensus 106 V~~vl~-s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 106 VYQVLL-SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEe-cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 667776 89999999999999877654 22343321 111 01 1135678999986 4577
Q ss_pred EEeCCCcEEEccCCCC
Q 021453 207 TCGIEKTVKLWAPMPT 222 (312)
Q Consensus 207 t~~~d~~i~iwd~~~~ 222 (312)
.-+.|.+||+||+...
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 7788999999998754
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.28 E-value=4.1 Score=33.69 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=58.1
Q ss_pred CCccEEEEEEccCCCeEEEecCCcEE-EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021453 87 NNIHITGLAYSNTSELLISYNDELVY-LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 87 ~~~~i~~~~~~~~~~~l~s~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
-...+..+.-+++|++++.+..|.++ -|+.... .-+... ......|..+.| .+++.+.+.
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-----------------~w~~~~-r~~~~riq~~gf-~~~~~lw~~ 203 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-----------------TWQPHN-RNSSRRIQSMGF-SPDGNLWML 203 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-----------------S-EEEE---SSS-EEEEEE--TTS-EEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCc-----------------cceEEc-cCccceehhcee-cCCCCEEEE
Confidence 34678888899999999998877665 6665321 111111 122245999999 899887665
Q ss_pred eccCceEEEEe-ccCCeeEEE----eecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021453 166 GSDCGHLFIWK-KKGGKLVRL----MVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 166 ~~~dg~v~iwd-~~~~~~~~~----~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~i 216 (312)
+ ..|.|++=+ ....+.... +....-.+.+++|.+++...|+|+ .|++..
T Consensus 204 ~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV 257 (302)
T ss_dssp E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE
T ss_pred e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE
Confidence 5 888888877 222222111 111223478999999988888776 444433
No 417
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.96 E-value=3.3 Score=34.83 Aligned_cols=110 Identities=15% Similarity=0.307 Sum_probs=56.3
Q ss_pred cEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---CCEEEEe
Q 021453 90 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSG 166 (312)
Q Consensus 90 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---~~~l~~~ 166 (312)
..++|+|.|+|+++++-..|.|++++....... . +.. ......... .-+..+++ +|+ ..+|...
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~-----~---v~~--~~~v~~~~~--~gllgia~-~p~f~~n~~lYv~ 69 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKT-----P---VAD--LPEVFADGE--RGLLGIAF-HPDFASNGYLYVY 69 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECE-----E---EEE---TTTBTSTT--BSEEEEEE--TTCCCC-EEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcc-----e---ecc--ccccccccc--CCccccee-ccccCCCCEEEEE
Confidence 457899999999999878999999993322000 0 000 001111122 23789998 673 3444333
Q ss_pred cc-C--------ceEEEEeccCC-------eeE-EEeec---CccceEEEEEcCCCCeEEEEeCCC
Q 021453 167 SD-C--------GHLFIWKKKGG-------KLV-RLMVG---DRHVVNQLEPHPHIPMFATCGIEK 212 (312)
Q Consensus 167 ~~-d--------g~v~iwd~~~~-------~~~-~~~~~---~~~~v~~v~~~p~~~~l~t~~~d~ 212 (312)
.. . ..|.-|....+ +.+ ..+.. ....-..|.|.|+|.+.++.+..+
T Consensus 70 ~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 70 YTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred EEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 32 1 23444444333 111 22222 223456799999998766666443
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.93 E-value=2.1 Score=38.99 Aligned_cols=108 Identities=11% Similarity=0.139 Sum_probs=66.3
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEc--CCCCeEEEEeCCCcEEEccCCC-----
Q 021453 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPH--PHIPMFATCGIEKTVKLWAPMP----- 221 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~~--p~~~~l~t~~~d~~i~iwd~~~----- 221 (312)
..-+.- +.-++..++-+....+.|||.+.+.....-. ...+.|.++.|. |+++.+++.|....|.++.-..
T Consensus 32 ~~li~g-ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISG-SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEee-cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 444444 4456666666667789999999887543322 345789999985 7888888999999999986321
Q ss_pred C--C---C--CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021453 222 T--D---F--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 222 ~--~---~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
. . + ..+..++...+....|..++.++++. ++.+.+++
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 1 1 1 11223443334455566666666554 44455554
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.91 E-value=3.3 Score=35.46 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=55.5
Q ss_pred ccEEEEEEccCCCeEEEec------------CC-cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021453 89 IHITGLAYSNTSELLISYN------------DE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 155 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~------------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 155 (312)
.....|+|.++|+++++.. .+ .|.+++-.++.+.. .....+..... ....+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~------------d~~~vfa~~l~--~p~Gi~~ 79 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY------------DKSNVFAEELS--MVTGLAV 79 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc------------ceeEEeecCCC--CccceeE
Confidence 3456889999999877742 22 67776544321100 12233332222 2678888
Q ss_pred ecCCCCEEEEeccCceEEEEeccC-----Cee--E-EEeec----CccceEEEEEcCCCCeEEEEe
Q 021453 156 FGPNDEYVMSGSDCGHLFIWKKKG-----GKL--V-RLMVG----DRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 156 ~s~~~~~l~~~~~dg~v~iwd~~~-----~~~--~-~~~~~----~~~~v~~v~~~p~~~~l~t~~ 209 (312)
.+++ |+++......++.|... ++. + ..+.. +......++|.|+|.+.++.+
T Consensus 80 -~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 80 -AVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -ecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 6777 44444444333445431 121 1 22222 124477899999998865544
No 420
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.53 E-value=10 Score=36.44 Aligned_cols=106 Identities=8% Similarity=0.022 Sum_probs=64.1
Q ss_pred EEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEE
Q 021453 94 LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 173 (312)
Q Consensus 94 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~ 173 (312)
.+..|...++.++-...+++|++... ++++......-+..|+.+.+ .+..++.|...-.|.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K----------------~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~ 999 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKK----------------KLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVH 999 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChH----------------HHHhhhhhccCceEEEEEee---cceEEEEeeccceEE
Confidence 35567777888888889999999876 55555443333345888876 466777777655555
Q ss_pred EE--eccCCeeEEEeecCc--cceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021453 174 IW--KKKGGKLVRLMVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 174 iw--d~~~~~~~~~~~~~~--~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
++ +....+. ..+.... ..|+++.+ -+...+|.+..=|.+.+-.+.
T Consensus 1000 ~~~y~~~~n~l-~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1000 FVRYRREDNQL-IVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEEecCCCeE-EEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECC
Confidence 54 4443443 3443221 24554443 355566776666666665543
No 421
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.50 E-value=1.2 Score=33.50 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=25.5
Q ss_pred cceEEEEEcCCC------CeEEEEeCCCcEEEccCCC
Q 021453 191 HVVNQLEPHPHI------PMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 191 ~~v~~v~~~p~~------~~l~t~~~d~~i~iwd~~~ 221 (312)
..|..++|||.| -+|++...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478899999965 2488888999999998764
No 422
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.44 E-value=5.8 Score=33.31 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=89.5
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCe------EEEEEccCCeecCCCCCCCCcccccccccccC-------CCccEEEEEE
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEY------ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-------NNIHITGLAY 96 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~ 96 (312)
-+.+..+.+.|.+ ..+++.+.+|. +..+++....- ....+.......+... ..-..-+|++
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~ 92 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQG-----GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV 92 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCC-----CccceEeccceeccCCCCCcCCcCCCChhHeEE
Confidence 4678999999766 46666677777 65555553110 0000100000011000 0113447788
Q ss_pred ccCCCeEEEec-C------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-
Q 021453 97 SNTSELLISYN-D------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD- 168 (312)
Q Consensus 97 ~~~~~~l~s~~-d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~- 168 (312)
.++|.++++.. + ..|+.++.... ......++..-....... .+.....-.-++++ +|+|+.|+++.+
T Consensus 93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~G~-~~~~~~vP~~~~~~~~~~---~~~~~N~G~E~la~-~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 93 PPDGSFWISSEGGRTGGIPPRIRRFDLDGR-VIRRFPVPAAFLPDANGT---SGRRNNRGFEGLAV-SPDGRTLFAAMES 167 (326)
T ss_pred ecCCCEEEEeCCccCCCCCCEEEEECCCCc-ccceEccccccccccCcc---ccccCCCCeEEEEE-CCCCCEEEEEECc
Confidence 78888888874 6 77888887622 100000110000000000 11112233889998 999997666543
Q ss_pred ----Cc--e-------EEE--EeccC-CeeEEEe----ec-----CccceEEEEEcCCCCeEEEE-----eCCCcEEEcc
Q 021453 169 ----CG--H-------LFI--WKKKG-GKLVRLM----VG-----DRHVVNQLEPHPHIPMFATC-----GIEKTVKLWA 218 (312)
Q Consensus 169 ----dg--~-------v~i--wd~~~-~~~~~~~----~~-----~~~~v~~v~~~p~~~~l~t~-----~~d~~i~iwd 218 (312)
|+ . +++ ||..+ ++....+ .. ....|+.+.+-+++++++.= .....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 1 444 45544 3232222 21 34578899999999865432 1234555555
Q ss_pred CC
Q 021453 219 PM 220 (312)
Q Consensus 219 ~~ 220 (312)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 43
No 423
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.19 E-value=5.2 Score=32.16 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=80.1
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 122 (312)
.++...-.++...+||..+.+.+ ..| . . ...=..++ .+++.|+.+ ....++.+|..+.
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~---------~~~---~--y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f--- 159 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKI---------GTF---P--Y--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF--- 159 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEE---------EEE---E-----SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT----
T ss_pred EEEEEEecCCeEEEEccccceEE---------EEE---e--c--CCcceEEE--cCCCEEEEECCccceEEECCccc---
Confidence 56677778899999999887632 111 1 1 12234555 566655555 5889999998765
Q ss_pred CCCcCCcccccCCCCCceEecccCCc---eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec-----------
Q 021453 123 SPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG----------- 188 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----------- 188 (312)
+..+.+....... .+.-+.|. +|...|=.-....|...|..+|+.+..+..
T Consensus 160 -------------~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~ 224 (264)
T PF05096_consen 160 -------------KEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDK 224 (264)
T ss_dssp -------------SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTT
T ss_pred -------------ceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccc
Confidence 4444444333222 25667773 677667666778889999999998876631
Q ss_pred -C---ccceEEEEEcCCCCeEEEEe
Q 021453 189 -D---RHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 189 -~---~~~v~~v~~~p~~~~l~t~~ 209 (312)
+ ..-.+.+++.|..+.|...+
T Consensus 225 ~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 225 SRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccCCeeEeEeEeCCCCEEEEEe
Confidence 0 23468999999877755444
No 424
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.54 E-value=1.3 Score=23.86 Aligned_cols=40 Identities=5% Similarity=0.035 Sum_probs=27.2
Q ss_pred CCCCEEEEec-cCceEEEEeccCCeeEEEeecCccceEEEEE
Q 021453 158 PNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 198 (312)
Q Consensus 158 ~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~ 198 (312)
|++++|+++. .++.|.++|..+++.+..+.... ....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-CCceEEe
Confidence 4566665544 58899999999998888776532 2334544
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.53 E-value=3.7 Score=35.52 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=71.0
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 108 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d 108 (312)
-+++|.++.|++++ +.+|+--.+.+|.+++....+.... ..+..+..+..|....|+.+.. +|--.+
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~-----------~~~~ck~k~~~IlGF~W~~s~e-~A~i~~ 131 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLE-----------YTQECKTKNANILGFCWTSSTE-IAFITD 131 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhH-----------HHHHhccCcceeEEEEEecCee-EEEEec
Confidence 35699999999999 8999999999999999854431100 0000023345688999988754 333334
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec--cCceEEEEeccCC
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGG 180 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~--~dg~v~iwd~~~~ 180 (312)
.-+-+|...... ..++..+.+... |.--.| .++.+.++.++ ..+.+.-+.++++
T Consensus 132 ~G~e~y~v~pek---------------rslRlVks~~~n--vnWy~y-c~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 132 QGIEFYQVLPEK---------------RSLRLVKSHNLN--VNWYMY-CPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred CCeEEEEEchhh---------------hhhhhhhhcccC--ccEEEE-ccccceEeeeccccccccccEEEeec
Confidence 445555543321 244445555544 666777 66666544333 3444444444433
No 426
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.39 E-value=0.031 Score=47.81 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-cCCc
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDEL 110 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~ 110 (312)
.....|-|.+. -++.++.+..+..||-.... +.. ...+.....++|..++..++. + ..+.
T Consensus 37 pi~~~w~~e~~-nlavaca~tiv~~YD~agq~-~le----------------~n~tg~aldm~wDkegdvlavlAek~~p 98 (615)
T KOG2247|consen 37 PIIHRWRPEGH-NLAVACANTIVIYYDKAGQV-ILE----------------LNPTGKALDMAWDKEGDVLAVLAEKTGP 98 (615)
T ss_pred cceeeEecCCC-ceehhhhhhHHHhhhhhcce-ecc----------------cCCchhHhhhhhccccchhhhhhhcCCC
Confidence 34567788874 47788888889999965332 111 122445567888888875554 4 5899
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021453 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
+++||+.+. ..+.+. +.... -.-+.| ++....++.+...|.+.|++..+.+.+-..-.|
T Consensus 99 iylwd~n~e-----------------ytqqLE~gg~~s--~sll~w-sKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh 158 (615)
T KOG2247|consen 99 IYLWDVNSE-----------------YTQQLESGGTSS--KSLLAW-SKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH 158 (615)
T ss_pred eeechhhhh-----------------hHHHHhccCcch--HHHHhh-ccCCccccccccccceEEEeccchhhhhhhccc
Confidence 999999875 222222 11111 122566 888999999999999999998887766555448
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021453 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 190 ~~~v~~v~~~p~~~~l~t~~~d~~i~iwd 218 (312)
..+++++++.+.+.. +.++.|..+.+-.
T Consensus 159 ~RRgtq~av~lEd~v-il~dcd~~L~v~~ 186 (615)
T KOG2247|consen 159 QRRGTQIAVTLEDYV-ILCDCDNTLSVTT 186 (615)
T ss_pred ccceeEEEeccccee-eecCcHHHHHHhh
Confidence 889999999988644 4444455444433
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.37 E-value=2.8 Score=37.39 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=43.6
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--cCCcE
Q 021453 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELV 111 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i 111 (312)
..+.|||.. .+|++-.....-.+++++.... .++.- ....+-|.+.+|.+||+.|+.+ +.=.-
T Consensus 116 QGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~s-------------rVkaD-i~~~G~IhCACWT~DG~RLVVAvGSsLHS 180 (671)
T PF15390_consen 116 QGCVWHPKK-AILTVLTARDVSVLPSVHCDSS-------------RVKAD-IKTSGLIHCACWTKDGQRLVVAVGSSLHS 180 (671)
T ss_pred CcccccCCC-ceEEEEecCceeEeeeeeeCCc-------------eEEEe-ccCCceEEEEEecCcCCEEEEEeCCeEEE
Confidence 467899987 5665544433334566654321 11111 2336779999999999866664 45567
Q ss_pred EEEEcCCC
Q 021453 112 YLFEKNMG 119 (312)
Q Consensus 112 ~iwd~~~~ 119 (312)
++||-...
T Consensus 181 yiWd~~qK 188 (671)
T PF15390_consen 181 YIWDSAQK 188 (671)
T ss_pred EEecCchh
Confidence 89986543
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.21 E-value=5.8 Score=30.73 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=32.0
Q ss_pred EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021453 45 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 45 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.|..+...+.|.+|++....+ .+... -..-+.|..+.++..|.+|++-
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~-------~~~~~-------F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEEC-------PLLCT-------FSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCC-------ceeEE-------EcchhheeEEEeccccceEEEE
Confidence 443436668899999984331 11111 1224678999999999999995
No 429
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.16 E-value=7.2 Score=31.75 Aligned_cols=117 Identities=9% Similarity=0.117 Sum_probs=75.5
Q ss_pred CCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021453 87 NNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 87 ~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
-...+.+++|+|+.+.|.+. ....-.++=...+ +.++++.-..- ...-.+.| -.++++.++
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----------------dlirtiPL~g~-~DpE~Iey-ig~n~fvi~ 145 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----------------DLIRTIPLTGF-SDPETIEY-IGGNQFVIV 145 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCC----------------ceEEEeccccc-CChhHeEE-ecCCEEEEE
Confidence 34459999999999866664 5444444433334 46555542211 11456777 677888888
Q ss_pred eccCceEEEEeccCCeeEE-------Eee--cC-ccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 166 GSDCGHLFIWKKKGGKLVR-------LMV--GD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 166 ~~~dg~v~iwd~~~~~~~~-------~~~--~~-~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
--.++.+.++.+.....+. .+. .+ +...-.++|.|..+.|..+=+-.=++||....
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 8889999988766442211 111 12 45667899999999888887777777776553
No 430
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.99 E-value=6.1 Score=30.60 Aligned_cols=104 Identities=10% Similarity=0.076 Sum_probs=62.7
Q ss_pred CCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---c---eEE
Q 021453 100 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---G---HLF 173 (312)
Q Consensus 100 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g---~v~ 173 (312)
+.++++.....|.+|++.... .++...|..- +.|..+.+ +..|+||++--.+ . .++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~--------------~~~~~~F~Tv---~~V~~l~y-~~~GDYlvTlE~k~~~~~~~fvR 90 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE--------------CPLLCTFSTV---GRVLQLVY-SEAGDYLVTLEEKNKRSPVDFVR 90 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC--------------CceeEEEcch---hheeEEEe-ccccceEEEEEeecCCccceEEE
Confidence 335555678889999998431 1344445433 33889998 8999999986432 2 566
Q ss_pred EE-eccC----CeeEE-EeecC---------------------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 174 IW-KKKG----GKLVR-LMVGD---------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 174 iw-d~~~----~~~~~-~~~~~---------------------~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
+| +++. .+++. .+.+| ..++.+++..|...-|+.|+ ++++.+|.+..+
T Consensus 91 ~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 91 AYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 65 2221 12222 11121 23567788888655555555 578999987654
No 431
>PRK13684 Ycf48-like protein; Provisional
Probab=90.91 E-value=8.9 Score=32.35 Aligned_cols=107 Identities=11% Similarity=0.000 Sum_probs=60.1
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEE-EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021453 89 IHITGLAYSNTSELLISYNDELVYLF-EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 167 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~ 167 (312)
..+..+.+.|++.+++++..|.++.- +-. + +.-...... ....+..+.+ .++++.++++
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~g-g----------------~tW~~~~~~-~~~~l~~i~~-~~~g~~~~vg- 232 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEPG-Q----------------TAWTPHQRN-SSRRLQSMGF-QPDGNLWMLA- 232 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEEcCCC-C----------------CeEEEeeCC-CcccceeeeE-cCCCCEEEEe-
Confidence 45777888888877777777765532 211 1 111111111 1134888888 7888877665
Q ss_pred cCceEEEEeccCCeeEEEeecC----ccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021453 168 DCGHLFIWKKKGGKLVRLMVGD----RHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 168 ~dg~v~iwd~~~~~~~~~~~~~----~~~v~~v~~~p~~~~l~t~~~d~~i~i 216 (312)
..|.+++=..+.+..-.....+ ...+..+.+.|++..++++ .+|.|..
T Consensus 233 ~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~ 284 (334)
T PRK13684 233 RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV 284 (334)
T ss_pred cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE
Confidence 4576653234444332222211 2357788999987765544 5676654
No 432
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.69 E-value=5.8 Score=38.94 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=86.6
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEE--------EccCCC-eEE
Q 021453 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA--------YSNTSE-LLI 104 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~-~l~ 104 (312)
..|-+-|.-++.-+ +.|..+.+|+..++...... .+-...|..+. |.|.=+ +|+
T Consensus 82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~---------------d~~shtIl~V~LvkPkpgvFv~~IqhlLv 144 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEY---------------DGLSHTILKVGLVKPKPGVFVPEIQHLLV 144 (1311)
T ss_pred eeeccchhhcceEE--EeCCeEEEEEcCCCCccccc---------------cchhhhheeeeeecCCCCcchhhhheeEE
Confidence 34444453323333 35789999999985421111 22223333332 223223 444
Q ss_pred EecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEec--cC---
Q 021453 105 SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK--KG--- 179 (312)
Q Consensus 105 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~--~~--- 179 (312)
.+.--.|.++-+.-...+.... .....++-...+..|.++.+ ..+|+.+++|- ||.|+-.-. ..
T Consensus 145 vaT~~ei~ilgV~~~~~~~~~~---------~f~~~~~i~~dg~~V~~I~~-t~nGRIF~~G~-dg~lyEl~Yq~~~gWf 213 (1311)
T KOG1900|consen 145 VATPVEIVILGVSFDEFTGELS---------IFNTSFKISVDGVSVNCITY-TENGRIFFAGR-DGNLYELVYQAEDGWF 213 (1311)
T ss_pred ecccceEEEEEEEeccccCccc---------ccccceeeecCCceEEEEEe-ccCCcEEEeec-CCCEEEEEEeccCchh
Confidence 4556666666654321110000 01111222233345899997 88888877765 454432211 11
Q ss_pred Ce-e----------------EEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 180 GK-L----------------VRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 180 ~~-~----------------~~~~~-~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
++ + +..+. .+..+|..+.....-..+.+-+..++|++|++..
T Consensus 214 ~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 214 GSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11 1 11223 4567899999988888899999999999999876
No 433
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.67 E-value=16 Score=34.87 Aligned_cols=128 Identities=11% Similarity=0.116 Sum_probs=74.5
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-cc-CCCccEEEEEEccCCCeEEEecC
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IG-KNNIHITGLAYSNTSELLISYND 108 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~l~s~~d 108 (312)
.+..+++|+|.....||+....|...||++.......... -......+ ..+ .. .....-..+.|.++-..|+.++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~-~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSN-LRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcc-eeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 4677899999877899999999999999992221100000 00000000 001 00 11234557889988888888888
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccC
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~ 179 (312)
..+.++|+.+. .....+........|.++.- ++. ...++..+ ..|.+.+..+
T Consensus 224 ~~l~~~d~~~~----------------~~~~~l~~~~~~~~IlDv~~-~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESN----------------WQTEYLVTAKTWSWILDVKR-SPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCC----------------CccchhccCCChhheeeEEe-cCCccceEEEEec--CeEEEEEccC
Confidence 99999999876 22111222222234777776 554 23332222 5676777665
No 434
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.65 E-value=8 Score=31.38 Aligned_cols=205 Identities=11% Similarity=0.049 Sum_probs=101.6
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCC-CCCcccccccccccCCCccEEEEE--EccCC-CeEEEe
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-DTPVDTFCPRHLIGKNNIHITGLA--YSNTS-ELLISY 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~-~~l~s~ 106 (312)
..|..+...|+- +.+++- .|+.++++++........... ..+... ..... ......+...+ -...+ ..|+.+
T Consensus 36 ~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~f~~~~~~~~~~~L~va 111 (275)
T PF00780_consen 36 SSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSR-SLPTK-LPETKGVSFFAVNGGHEGSRRLCVA 111 (275)
T ss_pred ceEEEEEEeccc-CEEEEE-cCCccEEEEchhhccccccccccccccc-ccccc-ccccCCeeEEeeccccccceEEEEE
Confidence 358899998876 444443 359999999986653221100 000000 00000 11123344443 11222 466777
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCC-CCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021453 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
....|.+|...... ... +..+.+.-. ..+..++| . ++.++.|..+ ...+.|+.++.....
T Consensus 112 ~kk~i~i~~~~~~~------------~~f~~~~ke~~lp---~~~~~i~~-~--~~~i~v~~~~-~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 112 VKKKILIYEWNDPR------------NSFSKLLKEISLP---DPPSSIAF-L--GNKICVGTSK-GFYLIDLNTGSPSEL 172 (275)
T ss_pred ECCEEEEEEEECCc------------ccccceeEEEEcC---CCcEEEEE-e--CCEEEEEeCC-ceEEEecCCCCceEE
Confidence 77788888876531 001 122333322 34889998 3 6677777644 477889887765443
Q ss_pred eecC------------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC--CCCCChhhhhhhhccCCCCceeEEec
Q 021453 186 MVGD------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLT 251 (312)
Q Consensus 186 ~~~~------------~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~ 251 (312)
+... ..++..+.. +++.+|+.- |..-.+-|..+.... .+. -......... ...++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~~~p~~~~~---~~pyli~~~ 245 (275)
T PF00780_consen 173 LDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQ-WSSAPQSVAY---SSPYLIAFS 245 (275)
T ss_pred eCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEE-cCCchhEEEE---ECCEEEEEC
Confidence 3211 122333333 344444432 334444454443222 111 0111111121 234888888
Q ss_pred CCceEEEEEecccCc
Q 021453 252 PDVIMHVLRLQRRQT 266 (312)
Q Consensus 252 ~d~~i~i~~~~~~~~ 266 (312)
.++ +.++++.+++.
T Consensus 246 ~~~-iEV~~~~~~~l 259 (275)
T PF00780_consen 246 SNS-IEVRSLETGEL 259 (275)
T ss_pred CCE-EEEEECcCCcE
Confidence 866 99999887743
No 435
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.42 E-value=20 Score=34.13 Aligned_cols=67 Identities=12% Similarity=-0.000 Sum_probs=49.4
Q ss_pred ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe----e-----------c----CccceEEEEEcCCCCeEEEE
Q 021453 148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM----V-----------G----DRHVVNQLEPHPHIPMFATC 208 (312)
Q Consensus 148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~-----------~----~~~~v~~v~~~p~~~~l~t~ 208 (312)
+.|.++.. ..-+.+++.+..||+|.++|..+.+.+... . + +-.++..++|||++-.++.-
T Consensus 260 ~~V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 34788876 667889999999999999998776544333 1 0 01133458899999999999
Q ss_pred eCCCcEE
Q 021453 209 GIEKTVK 215 (312)
Q Consensus 209 ~~d~~i~ 215 (312)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999865
No 436
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.37 E-value=4.6 Score=36.72 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=27.9
Q ss_pred eeEEEEecC----CCCEEEEeccCceEEEEeccCCeeEEEe
Q 021453 150 VKGVNFFGP----NDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 150 v~~v~~~s~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
+..++. +. +..+|++.+.|+++++||+.+++++...
T Consensus 217 ~~~~~~-~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAV-SSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE------ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEE-ecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 444554 44 6789999999999999999999996655
No 437
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.35 E-value=16 Score=33.04 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=46.2
Q ss_pred EEEEecCCCCEEEEeccC-----c-----------eEEEEeccCCeeEEEeecCccce---------EEEEEcCCCC---
Q 021453 152 GVNFFGPNDEYVMSGSDC-----G-----------HLFIWKKKGGKLVRLMVGDRHVV---------NQLEPHPHIP--- 203 (312)
Q Consensus 152 ~v~~~s~~~~~l~~~~~d-----g-----------~v~iwd~~~~~~~~~~~~~~~~v---------~~v~~~p~~~--- 203 (312)
..++ ++...+++.+... + .|.-.|+++|+..-.++.....+ .-+....+|+
T Consensus 238 ~~s~-D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~ 316 (527)
T TIGR03075 238 TGSY-DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRK 316 (527)
T ss_pred ceeE-cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEE
Confidence 3455 6666666655421 2 67788899999876665322211 1122334665
Q ss_pred eEEEEeCCCcEEEccCCCCCC
Q 021453 204 MFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 204 ~l~t~~~d~~i~iwd~~~~~~ 224 (312)
.++.+..+|.+.+.|..++++
T Consensus 317 ~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 317 LLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeCCCceEEEEECCCCce
Confidence 578889999999999988764
No 438
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.32 E-value=10 Score=30.56 Aligned_cols=108 Identities=14% Similarity=0.045 Sum_probs=65.3
Q ss_pred cEEEEEEccCCCeEEEec--CCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021453 90 HITGLAYSNTSELLISYN--DEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 90 ~i~~~~~~~~~~~l~s~~--d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
.+.+.++++++..++.-. ++. ++++..... ....+.+. .+..-.| ++++...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----------------~~~~~~g~----~l~~PS~-d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----------------VRPVLTGG----SLTRPSW-DPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----------------ceeeccCC----ccccccc-cCCCCEEEE
Confidence 678899999998666532 444 555544322 22222222 2778888 888877777
Q ss_pred eccCceEEEEe-ccCCeeE-EEeec--CccceEEEEEcCCCCeEEEEe---CCCcEEEccC
Q 021453 166 GSDCGHLFIWK-KKGGKLV-RLMVG--DRHVVNQLEPHPHIPMFATCG---IEKTVKLWAP 219 (312)
Q Consensus 166 ~~~dg~v~iwd-~~~~~~~-~~~~~--~~~~v~~v~~~p~~~~l~t~~---~d~~i~iwd~ 219 (312)
...+....++. ..+++.. ..+.. -...|..+.+||+|..+|... .++.|.+=-+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 66666666663 3333221 12221 112899999999998866554 3567777643
No 439
>PRK10115 protease 2; Provisional
Probab=89.00 E-value=20 Score=33.67 Aligned_cols=196 Identities=12% Similarity=0.148 Sum_probs=92.2
Q ss_pred cceEEEEEcCCCCcEEEEE-e----CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE-E
Q 021453 31 IRLNAIVIDPRNPNYFAVG-G----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-I 104 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~-~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~ 104 (312)
-.+..+.|+|++ ++|+.+ . ....|++.|+.++..+ +..+ .. .-..++|.++++.| .
T Consensus 127 ~~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l-------------~~~i-~~---~~~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWY-------------PELL-DN---VEPSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCC-------------Cccc-cC---cceEEEEeeCCCEEEE
Confidence 457788999999 566554 2 2345788888776521 1111 11 11468999999744 4
Q ss_pred Eec-C-----CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---CceEEEE
Q 021453 105 SYN-D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIW 175 (312)
Q Consensus 105 s~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---dg~v~iw 175 (312)
+.. + ..|+.+++.++.. +....+...... ..-..+.+.++++++..+. ++.+.++
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~--------------~d~lv~~e~~~~--~~~~~~~s~d~~~l~i~~~~~~~~~~~l~ 252 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPAS--------------QDELVYEEKDDT--FYVSLHKTTSKHYVVIHLASATTSEVLLL 252 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChh--------------HCeEEEeeCCCC--EEEEEEEcCCCCEEEEEEECCccccEEEE
Confidence 433 2 3577788876510 112234432222 2212222557777664433 4578888
Q ss_pred ec--cCCeeEEEeecCccceEEEEEcCCCCeEEEEeC-CCcEEE--ccCC-CCCCCCCCCC-hhhhhhhhccCCCCceeE
Q 021453 176 KK--KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKL--WAPM-PTDFPPLPDN-AEKIMKANKQGREDHSRI 248 (312)
Q Consensus 176 d~--~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~-d~~i~i--wd~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 248 (312)
+. .+++....+....+....+. +..+.+++.... ...-+| .++. ..+...+..+ ....+....+. .+.+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~ 330 (686)
T PRK10115 253 DAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVV 330 (686)
T ss_pred ECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEE
Confidence 84 23443222322222223332 333333333322 223333 3443 2222223223 22222222222 345666
Q ss_pred EecCCceEEEEEec
Q 021453 249 TLTPDVIMHVLRLQ 262 (312)
Q Consensus 249 s~~~d~~i~i~~~~ 262 (312)
+...++.-+++-+.
T Consensus 331 ~~~~~g~~~l~~~~ 344 (686)
T PRK10115 331 EERQRGLTSLRQIN 344 (686)
T ss_pred EEEeCCEEEEEEEc
Confidence 66667666655443
No 440
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.84 E-value=23 Score=34.05 Aligned_cols=168 Identities=11% Similarity=0.133 Sum_probs=94.8
Q ss_pred eeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe----------CCCeEEEEEccCCeecCCCCCCCCcccccccc
Q 021453 13 RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRH 82 (312)
Q Consensus 13 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
.++..+.+...+. ...|.++.|..+...++++|+ ..|.|.+|.+...+- ++....
T Consensus 761 ~vl~~hef~~~E~----~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~---------L~~v~e-- 825 (1096)
T KOG1897|consen 761 EVLSSHEFERNET----ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS---------LELVAE-- 825 (1096)
T ss_pred eEEeeccccccce----eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc---------eeeeee--
Confidence 3555554443221 234555668877447777775 247788887776220 000000
Q ss_pred cccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE
Q 021453 83 LIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 162 (312)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~ 162 (312)
..-.+.+.++.-- +|+ ++++-...|++|+..+. +.++.-..+... +..+.. ...+..
T Consensus 826 --~~v~Gav~aL~~f-ngk-llA~In~~vrLye~t~~----------------~eLr~e~~~~~~--~~aL~l-~v~gde 882 (1096)
T KOG1897|consen 826 --TVVKGAVYALVEF-NGK-LLAGINQSVRLYEWTTE----------------RELRIECNISNP--IIALDL-QVKGDE 882 (1096)
T ss_pred --eeeccceeehhhh-CCe-EEEecCcEEEEEEcccc----------------ceehhhhcccCC--eEEEEE-EecCcE
Confidence 0012333333211 344 44555678999998776 455555556655 666666 678999
Q ss_pred EEEeccCceEEEEeccC--CeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021453 163 VMSGSDCGHLFIWKKKG--GKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 163 l~~~~~dg~v~iwd~~~--~~~~~~~~-~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
+++|..-+.+.+...+. |.....-+ -+....+.+.+-.+..+ +.+..+|.+.+-..
T Consensus 883 I~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~y-lgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 883 IAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTY-LGAENSGNLFTVRK 941 (1096)
T ss_pred EEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceE-EeecccccEEEEEe
Confidence 99999988887765543 33333222 35566777776655444 44455677766543
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.75 E-value=1.8 Score=39.22 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=41.3
Q ss_pred CCCCEEEEeccCceEEEEeccC----CeeEEE-eec---------------------CccceEEEEEcC----CCCeEEE
Q 021453 158 PNDEYVMSGSDCGHLFIWKKKG----GKLVRL-MVG---------------------DRHVVNQLEPHP----HIPMFAT 207 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~----~~~~~~-~~~---------------------~~~~v~~v~~~p----~~~~l~t 207 (312)
++...++.+..||.+....... +..... ... ....+..++.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677788888899888887653 221111 110 012455666666 6678999
Q ss_pred EeCCCcEEEccCCCCCC
Q 021453 208 CGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 208 ~~~d~~i~iwd~~~~~~ 224 (312)
.+.|+++|+||+.++..
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999998875
No 442
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.60 E-value=6.9 Score=27.77 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=68.5
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc---CC--CeEEEecC
Q 021453 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TS--ELLISYND 108 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~--~~l~s~~d 108 (312)
..-.|....| .|+.++.-|+|.|++.......... ...+++.+ .-...|++|+-.+ +. ..|+.++.
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~L-------Nin~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-QDSDISFL-------NINQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCcccccccc-ccCceeEE-------ECCCceEEEEEEecCCCCCcCEEEEecc
Confidence 3456777774 7888888899999998754321110 11122111 1245677776544 22 48888999
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe--cCCCCEEEEeccCceEEEEeccCCee
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
..+..||+.... - .-++.-.+. |.++.+- .....-|+..+....|.-||..-.+.
T Consensus 73 t~llaYDV~~N~----------------d-~Fyke~~DG--vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 73 TSLLAYDVENNS----------------D-LFYKEVPDG--VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred ceEEEEEcccCc----------------h-hhhhhCccc--eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 999999998761 1 122222333 6666551 22223344444456777777654443
No 443
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.55 E-value=4.6 Score=35.01 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=50.9
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc-eEEEEE-cCCC---------------C-e-EEEEe
Q 021453 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-VNQLEP-HPHI---------------P-M-FATCG 209 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~v~~-~p~~---------------~-~-l~t~~ 209 (312)
.+.+++. +|.+++.++...-|+|.++|+.++..++.+++-.+. +.-+.. .+.. . + ++-+-
T Consensus 309 ~~~~i~~-sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 309 EGESICL-SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred eEEEEEE-CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 3788887 999999999999999999999999888888765431 111110 1111 1 1 33445
Q ss_pred CCCcEEEccCCCCC
Q 021453 210 IEKTVKLWAPMPTD 223 (312)
Q Consensus 210 ~d~~i~iwd~~~~~ 223 (312)
.-|.|.||.++.+.
T Consensus 388 rRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 388 RRGILEVWSMRQGP 401 (415)
T ss_pred cCCeEEEEecCCCC
Confidence 67889999987764
No 444
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.51 E-value=7 Score=36.41 Aligned_cols=102 Identities=10% Similarity=0.083 Sum_probs=52.5
Q ss_pred eEEEEecCCCCEEEEeccCc-----eEEEEecc---CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021453 151 KGVNFFGPNDEYVMSGSDCG-----HLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 151 ~~v~~~s~~~~~l~~~~~dg-----~v~iwd~~---~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
..++| -|.|..+++-..|| .|.++..+ .|+.-... +....+..++|.-....++.+ ....|++|-....
T Consensus 250 ~~LSW-kpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy 326 (1243)
T COG5290 250 HQLSW-KPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY 326 (1243)
T ss_pred hcccc-ccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence 45788 89999999877554 35455422 23221111 223445667776555444433 4578999987765
Q ss_pred CCCCCCCChhhhhhhhccCCCCceeEEecCCce
Q 021453 223 DFPPLPDNAEKIMKANKQGREDHSRITLTPDVI 255 (312)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 255 (312)
...--....-+-+....|+++...-+-++..+.
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~ 359 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEEKNTLLFRDGER 359 (1243)
T ss_pred EEEEEEeecCCCcceeeeccccCcEEEEecCCe
Confidence 431100111112344557775443333333333
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.47 E-value=9.8 Score=36.05 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=40.8
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccce-------------EEEEEcC--CCCeEEEEeC----------CCcE
Q 021453 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-------------NQLEPHP--HIPMFATCGI----------EKTV 214 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-------------~~v~~~p--~~~~l~t~~~----------d~~i 214 (312)
+..++.++.|+.|.-.|.++|+.+-.+.. .+.| ..+.-.| .+..++.++. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788899999999999999998866532 1111 0111122 1334555532 5889
Q ss_pred EEccCCCCC
Q 021453 215 KLWAPMPTD 223 (312)
Q Consensus 215 ~iwd~~~~~ 223 (312)
+-+|.++++
T Consensus 339 ~A~Da~TGk 347 (764)
T TIGR03074 339 RAFDVNTGA 347 (764)
T ss_pred EEEECCCCc
Confidence 999998876
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.44 E-value=13 Score=30.63 Aligned_cols=182 Identities=14% Similarity=0.106 Sum_probs=92.1
Q ss_pred cceEEEEEcCCC-----------CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccE-EEEEEcc
Q 021453 31 IRLNAIVIDPRN-----------PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI-TGLAYSN 98 (312)
Q Consensus 31 ~~v~~~~~~p~~-----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 98 (312)
...+.+.|+... ...++.+++||+|.-|...-... .++..+.. +-......| ..+++..
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t-------~~~~~~~~--~d~s~~gavYkGLAi~~ 147 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTT-------RMTRAEIV--VDASQQGNVYKGLAVGP 147 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcc-------cccccEEE--EccCCCcceeeeeEEee
Confidence 456777777432 13467788999999998643220 00000000 001111222 3455543
Q ss_pred C--CCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEE
Q 021453 99 T--SELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 174 (312)
Q Consensus 99 ~--~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~i 174 (312)
. +.+|..+ ..++|-+||-.=........+..-.+...-...-+..-....+|+-..- .++.+.=+.|..-|.|-+
T Consensus 148 ~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~q-d~~~~d~v~G~G~G~Vdv 226 (336)
T TIGR03118 148 TGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQ-DADRNDEVAGAGLGYVNV 226 (336)
T ss_pred cCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEec-CCcccccccCCCcceEEE
Confidence 3 4555555 4899999986432111111110000000000000011111112332222 444444455666789999
Q ss_pred EeccCCeeEEEeec--CccceEEEEEcC------CCCeEEEEeCCCcEEEccCCCCC
Q 021453 175 WKKKGGKLVRLMVG--DRHVVNQLEPHP------HIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 175 wd~~~~~~~~~~~~--~~~~v~~v~~~p------~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
||+. ++.++.+.. .-.....|+..| .+.+|+---.||+|..||..++.
T Consensus 227 Fd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 227 FTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred EcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 9986 888887742 223456677765 45566666689999999998765
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.34 E-value=22 Score=33.22 Aligned_cols=123 Identities=9% Similarity=-0.013 Sum_probs=69.3
Q ss_pred cEEEEEEccCC--CeEEEe-cCCcEEEEEcCCCc-----C--CCCCcCCcccccCCCCCceEecccCCceeeEEEEec--
Q 021453 90 HITGLAYSNTS--ELLISY-NDELVYLFEKNMGL-----G--PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG-- 157 (312)
Q Consensus 90 ~i~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s-- 157 (312)
.|.-|....-| ++|+.+ .||.|.+|.++.-. . ..... ..-...++-..+... ..++++++ .
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~---~~r~~i~P~f~~~v~---~SaWGLdI-h~~ 174 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG---FSRLKIKPFFHLRVG---ASAWGLDI-HDY 174 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc---cccccCCCCeEeecC---CceeEEEE-Eec
Confidence 35555544433 355555 79999999874311 0 00000 000011122222212 23788888 5
Q ss_pred CCCCEEEEeccCceEEEEeccCC--eeE-EEeecCccceEEEEEcCCC-----C-eEEEEeCCCcEEEccC
Q 021453 158 PNDEYVMSGSDCGHLFIWKKKGG--KLV-RLMVGDRHVVNQLEPHPHI-----P-MFATCGIEKTVKLWAP 219 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~~--~~~-~~~~~~~~~v~~v~~~p~~-----~-~l~t~~~d~~i~iwd~ 219 (312)
...++||+++....|.||-+... +.. ..-..|...|-+|+|-++. . .+++++-.|.+-+|++
T Consensus 175 ~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 175 KKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66788888888888888764431 111 1111255678888887654 2 6888889999888777
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=88.00 E-value=19 Score=32.16 Aligned_cols=61 Identities=7% Similarity=0.072 Sum_probs=33.0
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCC
Q 021453 159 NDEYVMSGSDCGHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDF 224 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~ 224 (312)
+++..+.|+ .+.+||..+.+... .+.........+. -++++.+.||.+ .++..||+.+.+.
T Consensus 407 ~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 407 GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 456556663 56788887765432 2221112222222 266777777754 3566777776654
No 449
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=11 Score=29.20 Aligned_cols=129 Identities=11% Similarity=0.105 Sum_probs=68.4
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 122 (312)
.+..-.-.+|.-..+|.++.++... . .-.+.=.. ...+++-|..+ ....++.-|..+-
T Consensus 102 ~~y~LTw~egvaf~~d~~t~~~lg~--------------~--~y~GeGWg--Lt~d~~~LimsdGsatL~frdP~tf--- 160 (262)
T COG3823 102 YFYQLTWKEGVAFKYDADTLEELGR--------------F--SYEGEGWG--LTSDDKNLIMSDGSATLQFRDPKTF--- 160 (262)
T ss_pred eEEEEEeccceeEEEChHHhhhhcc--------------c--ccCCccee--eecCCcceEeeCCceEEEecCHHHh---
Confidence 3444456778888888887663211 1 00122223 33455545554 4556666665543
Q ss_pred CCCcCCcccccCCCCCceEecccCCc---eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee------------
Q 021453 123 SPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV------------ 187 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------------ 187 (312)
....+........ .+..+.| -+|...+-.-.+..|...+..+|+.+..+.
T Consensus 161 -------------a~~~~v~VT~~g~pv~~LNELE~--VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~ 225 (262)
T COG3823 161 -------------AELDTVQVTDDGVPVSKLNELEW--VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDK 225 (262)
T ss_pred -------------hhcceEEEEECCeecccccceee--eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccc
Confidence 2222222111111 1445555 356665555556667777777777665442
Q ss_pred cCccceEEEEEcCCCCe-EEEE
Q 021453 188 GDRHVVNQLEPHPHIPM-FATC 208 (312)
Q Consensus 188 ~~~~~v~~v~~~p~~~~-l~t~ 208 (312)
.|..-.+.+++.|++.. ++||
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccceeecCcCCeEEEec
Confidence 23345678999998854 5555
No 450
>PRK10115 protease 2; Provisional
Probab=87.82 E-value=24 Score=33.16 Aligned_cols=109 Identities=6% Similarity=-0.057 Sum_probs=63.3
Q ss_pred ccEEEEEEccCCCeEEEec--CC----cEEEEEcCCCcCCCCCcCCcccccCCCCC-ceEecccCCceeeEEEEecCCCC
Q 021453 89 IHITGLAYSNTSELLISYN--DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDE 161 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~--d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~~s~~~~ 161 (312)
-.+..+.++|+|++|+.+. +| .|++.|+.++ ..+ ..+.+- -..++| .++++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg----------------~~l~~~i~~~-----~~~~~w-~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG----------------NWYPELLDNV-----EPSFVW-ANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC----------------CCCCccccCc-----ceEEEE-eeCCC
Confidence 4467789999999777652 33 3888888765 221 222211 135888 78887
Q ss_pred EEEEeccC------ceEEEEeccCC--eeEEEeecCccceE-EEEEcCCCCeEEEEe---CCCcEEEccC
Q 021453 162 YVMSGSDC------GHLFIWKKKGG--KLVRLMVGDRHVVN-QLEPHPHIPMFATCG---IEKTVKLWAP 219 (312)
Q Consensus 162 ~l~~~~~d------g~v~iwd~~~~--~~~~~~~~~~~~v~-~v~~~p~~~~l~t~~---~d~~i~iwd~ 219 (312)
.|+....+ ..|+.+++.++ +-...+........ .+..+.++++++..+ .++.+.+++.
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 66554332 36778888877 33334443333333 333344777744433 3457888884
No 451
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.36 E-value=3 Score=22.10 Aligned_cols=29 Identities=3% Similarity=-0.099 Sum_probs=19.1
Q ss_pred CccceEEEEEcCCCCeEEEEe-CC--CcEEEc
Q 021453 189 DRHVVNQLEPHPHIPMFATCG-IE--KTVKLW 217 (312)
Q Consensus 189 ~~~~v~~v~~~p~~~~l~t~~-~d--~~i~iw 217 (312)
....-....|+|+|+.|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999999966655 44 555555
No 452
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.30 E-value=19 Score=31.27 Aligned_cols=71 Identities=7% Similarity=-0.074 Sum_probs=43.8
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccCCe-----eEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-----LVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~--~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
.+..+.+ .+++..++++ ..|.+ ++....++ ....... ....++++.|.+++..+++| ..|.+....-..
T Consensus 282 ~l~~v~~-~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G 357 (398)
T PLN00033 282 RIQNMGW-RADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGG 357 (398)
T ss_pred ceeeeeE-cCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCC
Confidence 3888988 7888887766 45665 34444443 2222221 12358899999887766555 578777776444
Q ss_pred CC
Q 021453 222 TD 223 (312)
Q Consensus 222 ~~ 223 (312)
..
T Consensus 358 ~t 359 (398)
T PLN00033 358 KS 359 (398)
T ss_pred cc
Confidence 44
No 453
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.56 E-value=16 Score=29.65 Aligned_cols=196 Identities=8% Similarity=-0.009 Sum_probs=110.3
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 111 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 111 (312)
.-..++-.|+| ..-.++...+.|=-.|..+++.. ....+.......|..-|+|..-++-...-|
T Consensus 63 ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~---------------~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI 126 (353)
T COG4257 63 APFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVE---------------TYPLGSGASPHGIVVGPDGSAWITDTGLAI 126 (353)
T ss_pred CccccccCCCC-ceEEecCccccceecCCCCCceE---------------EEecCCCCCCceEEECCCCCeeEecCccee
Confidence 44567777777 56677766666766677777521 111233444556777788765555322244
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEe--cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021453 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
.-+|-++. ....|. ............| ++.|++.+++.. |.---.|.. ...+..+...
T Consensus 127 ~R~dpkt~-----------------evt~f~lp~~~a~~nlet~vf-D~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaP 186 (353)
T COG4257 127 GRLDPKTL-----------------EVTRFPLPLEHADANLETAVF-DPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAP 186 (353)
T ss_pred EEecCccc-----------------ceEEeecccccCCCcccceee-CCCccEEEeecc-ccceecCcc-cCceeeeccC
Confidence 44454432 122222 1122233777888 999999888863 111111222 1223444332
Q ss_pred -ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCCh--hhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 190 -RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 190 -~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
....+.|+..|+|..-++.-.+..|-.-|...+....+.... ..-....+..+-++..++....+.+..+|-..
T Consensus 187 qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 187 QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred CCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 234578899999998777667788888888776543333211 22223444455566777766667777776433
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.52 E-value=28 Score=32.54 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=72.0
Q ss_pred CccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCe-ecCCC--CCCC-C-cccccccccccCCCccEEEEEEc--cCC
Q 021453 29 NSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCH-WYSPI--SSDT-P-VDTFCPRHLIGKNNIHITGLAYS--NTS 100 (312)
Q Consensus 29 h~~~v~~~~~~p~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~~-~-~~~~~~~~~~~~~~~~i~~~~~~--~~~ 100 (312)
.+..|+-|....- +...|+.+..||.|.+|.+++-- .+... ..+. . .....+... ..-...+++++++ ...
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKS 177 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcc
Confidence 3456776666542 22688899999999999874211 00000 0000 0 000011111 2234578999998 666
Q ss_pred CeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC----CC-EEEEeccCceEEE
Q 021453 101 ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN----DE-YVMSGSDCGHLFI 174 (312)
Q Consensus 101 ~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~----~~-~l~~~~~dg~v~i 174 (312)
++||.++ ...|.||-....... .....-..+... |.+|+|.+.+ |. ++++++-.|.+.+
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r-------------~~~~~s~~~~hN--IP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDER-------------FYHVPSHQHSHN--IPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred eEEEEecCCceEEEEEEeccccc-------------cccccccccccC--CCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 7888874 566666644321000 000000113333 8889884222 32 7888899999999
Q ss_pred Eec
Q 021453 175 WKK 177 (312)
Q Consensus 175 wd~ 177 (312)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 887
No 455
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.80 E-value=30 Score=32.22 Aligned_cols=53 Identities=19% Similarity=0.363 Sum_probs=37.8
Q ss_pred CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021453 51 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 119 (312)
Q Consensus 51 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 119 (312)
.--.|+||+.. |++ ...+.-.|. .+..+.|+.+..+|+...+|++++|++...
T Consensus 62 a~~~I~If~~s-G~l--------------L~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 62 ARPYIRIFNIS-GQL--------------LGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred cceeEEEEecc-ccc--------------hHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchh
Confidence 34568888875 431 222223343 678999999988999999999999998754
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.46 E-value=24 Score=30.67 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=64.6
Q ss_pred CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec---ccCCceeeEEEEecCCCCEEE
Q 021453 88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG---HRNSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~s~~~~~l~ 164 (312)
...+..+.+.+++.+++++..|.+..=+-... + .....+.. ......+..+.| .+++..++
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~--------------~-~~~~~f~~~~~~~~~~~l~~v~~-~~d~~~~a 343 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYVSKGTGL--------------T-EEDFDFEEADIKSRGFGILDVGY-RSKKEAWA 343 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEEecCCCC--------------c-ccccceeecccCCCCcceEEEEE-cCCCcEEE
Confidence 45688999999999888888777655332211 0 00001111 111123888988 66666555
Q ss_pred EeccCceEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEc
Q 021453 165 SGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217 (312)
Q Consensus 165 ~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~v~~~p~~~~l~t~~~d~~i~iw 217 (312)
+ +..|.+.... ..|+.-...+ .-....+.+.|.++++.+++|. +|.|--|
T Consensus 344 ~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 344 A-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred E-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence 5 4567665553 4454433332 2235688999988877777764 6776544
No 457
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.45 E-value=19 Score=29.62 Aligned_cols=195 Identities=17% Similarity=0.210 Sum_probs=91.9
Q ss_pred eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCC-----cEEEEEeCCCeEEEEEccCCeecCCCCCC---C
Q 021453 2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP-----NYFAVGGSDEYARVYDIRKCHWYSPISSD---T 73 (312)
Q Consensus 2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~ 73 (312)
-+||+++++..+.+.....-. .....+..+.+....+ ..+++=+..+-|.++|+.+++........ .
T Consensus 37 v~~Dl~t~~li~~~~~p~~~~-----~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~ 111 (287)
T PF03022_consen 37 VAFDLKTNQLIRRYPFPPDIA-----PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPD 111 (287)
T ss_dssp EEEETTTTCEEEEEE--CCCS------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS
T ss_pred EEEECCCCcEEEEEECChHHc-----ccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCccee
Confidence 468888887555554432211 1356788888877432 23444455578999999987743222110 0
Q ss_pred C-cccccccccccCCCccEEEEEEcc---CCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC
Q 021453 74 P-VDTFCPRHLIGKNNIHITGLAYSN---TSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 147 (312)
Q Consensus 74 ~-~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (312)
| ...+............+..++.+| +++.|.-. +...++--...--..+ ...... .-....+.+ +.+.
T Consensus 112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~---~~~~~~-~~~~~v~~l-G~k~- 185 (287)
T PF03022_consen 112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDP---SLSDAQ-ALASQVQDL-GDKG- 185 (287)
T ss_dssp -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCST---T--HHH--HHHT-EEE-EE---
T ss_pred ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCc---cccccc-cccccceec-cccC-
Confidence 0 001100000011123477777766 55544443 2333333332110000 000000 000111122 2221
Q ss_pred ceeeEEEEecCCCCEEEEeccCceEEEEeccCC---eeEEEee-cC--ccceEEEEEcC--CCCeEEEE
Q 021453 148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---KLVRLMV-GD--RHVVNQLEPHP--HIPMFATC 208 (312)
Q Consensus 148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~-~~--~~~v~~v~~~p--~~~~l~t~ 208 (312)
.....+++ +++|.++++--..+.|..|+..+. +....+. .. -..+.++++.+ +|.+.+.+
T Consensus 186 ~~s~g~~~-D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 186 SQSDGMAI-DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp -SECEEEE-ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCceEEE-CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 12456777 789999999999999999998751 1122222 11 24678888888 66664444
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.07 E-value=4.6 Score=21.32 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=19.6
Q ss_pred cceEEEEEcCCCCcEEEEEeCC--CeEEEE
Q 021453 31 IRLNAIVIDPRNPNYFAVGGSD--EYARVY 58 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d--~~i~iw 58 (312)
..-...+|+|+|..++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4567889999996666666666 766666
No 459
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.97 E-value=10 Score=28.43 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCC------eEEEe-cCCcEEEEEcCC
Q 021453 89 IHITGLAYSNTSE------LLISY-NDELVYLFEKNM 118 (312)
Q Consensus 89 ~~i~~~~~~~~~~------~l~s~-~d~~i~iwd~~~ 118 (312)
..+..++|||.|- +|++. .++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3789999999662 67764 699999998654
No 460
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=83.32 E-value=12 Score=32.47 Aligned_cols=163 Identities=13% Similarity=0.074 Sum_probs=88.2
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC----ccEE-EEEEccCCC-eE
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN----IHIT-GLAYSNTSE-LL 103 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~-~~~~~~~~~-~l 103 (312)
...|..+-..|++ +.++.-+. ..+.++++.+..+... .+..... ..|+ .+..-..|. ++
T Consensus 220 ~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~r-------------kl~~dspg~~~~~Vte~l~lL~Gg~SLL 284 (733)
T COG4590 220 FSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIR-------------KLVDDSPGDSRHQVTEQLYLLSGGFSLL 284 (733)
T ss_pred ccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchh-------------hhhhcCCCchHHHHHHHHHHHhCceeEE
Confidence 4567788899999 56655544 6788888876543210 0001000 1111 111122333 55
Q ss_pred EEecCCcEEEE-EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021453 104 ISYNDELVYLF-EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 104 ~s~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
+...||.|.-| |.+....+ ....++.++-.... +..+.- ..+.+-+++-+..|++..+..-..+.
T Consensus 285 v~~~dG~vsQWFdvr~~~~p-----------~l~h~R~f~l~pa~--~~~l~p-e~~rkgF~~l~~~G~L~~f~st~~~~ 350 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQP-----------HLNHIRNFKLAPAE--VQFLLP-ETNRKGFYSLYRNGTLQSFYSTSEKL 350 (733)
T ss_pred EEcCCCceeeeeeeecCCCC-----------cceeeeccccCccc--ceeecc-ccccceEEEEcCCCceeeeecccCcc
Confidence 55678888766 66554211 11222222222222 333322 22344567777888888776543333
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 183 ~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
+. +..--..+.-+++||.+.++++-. .|.|+++.+++..
T Consensus 351 lL-~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 351 LL-FERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred ee-hhhhhcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 32 222223556789999999987754 6889999887754
No 461
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=83.17 E-value=28 Score=29.63 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=33.8
Q ss_pred EeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEcc
Q 021453 165 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWA 218 (312)
Q Consensus 165 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~--~d~~i~iwd 218 (312)
.+..+|++.-||..+... +.+...-.-.+.++.||++.+++.+- .-..-|.|=
T Consensus 194 ~g~~~GRl~~YD~~tK~~-~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi 248 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVT-KVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWI 248 (376)
T ss_pred cCCCccceEEecCcccch-hhhhhcccccccccCCCCCCEEEEEeeccceeeeeEe
Confidence 444678888888876543 33332334457899999999977764 223445663
No 462
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.12 E-value=40 Score=31.47 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=45.2
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
+..+.. ||+.++|+.=...|.|.+-+.+..+....+. .|. +...++|.-+. -++.+.+..+.+....+..
T Consensus 219 ~~ki~V-S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~ 290 (829)
T KOG2280|consen 219 VVKISV-SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND--AVVLSWEVNLMLVGPPGDS 290 (829)
T ss_pred EEEEEE-cCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC--ceEEEEeeeEEEEcCCCCc
Confidence 566666 8899999999999999999888777766665 232 33467775444 2233334455555544443
No 463
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=83.03 E-value=36 Score=30.88 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=60.1
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 123 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 123 (312)
..++.++.++.|+-.|..+++.+-......+...... ......-..+++. ++++++...++.|.-+|..++
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~----~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TG---- 140 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPV----MCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTG---- 140 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccc----cccccccccceEE-CCEEEEEcCCCEEEEEECCCC----
Confidence 3667777788999999999885543221111000000 0000000112222 345555567999999999887
Q ss_pred CCcCCcccccCCCCCceEecc--cCCceeeE-EEEecCCCCEEEEec------cCceEEEEeccCCeeEEEe
Q 021453 124 PLSLSPEDLQKREEPQVYSGH--RNSQTVKG-VNFFGPNDEYVMSGS------DCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~-v~~~s~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~ 186 (312)
+.+...... .....+.+ -.. .++ .++.+. .+|.|..+|..+|+.+-.+
T Consensus 141 ------------k~~W~~~~~~~~~~~~~tssP~v--~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 141 ------------KVVWSKKNGDYKAGYTITAAPLV--VKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ------------CEEeecccccccccccccCCcEE--ECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 444333211 10000111 111 023 344443 2689999999999876544
No 464
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.74 E-value=23 Score=31.57 Aligned_cols=89 Identities=10% Similarity=0.135 Sum_probs=51.6
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcc---ccccc--ccccCCCccEEEEEEccCC----
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD---TFCPR--HLIGKNNIHITGLAYSNTS---- 100 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~i~~~~~~~~~---- 100 (312)
.-.|..+..++.| ..++..+.+|.+.++=.+.......++.+.++- ++... .+.....-.+...+|+|+.
T Consensus 103 ~feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 3467888899999 677777888877665433222111222222221 11111 1111222345678899976
Q ss_pred CeEEEecCCcEEEEEcCCC
Q 021453 101 ELLISYNDELVYLFEKNMG 119 (312)
Q Consensus 101 ~~l~s~~d~~i~iwd~~~~ 119 (312)
.+++-.+|..+++||+...
T Consensus 182 hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eEEEEecCcEEEEEecCCc
Confidence 3555578999999999764
No 465
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.30 E-value=47 Score=31.70 Aligned_cols=55 Identities=7% Similarity=-0.009 Sum_probs=35.9
Q ss_pred CceEEEEeccCCeeEEEeecCccc---------eEEEEEcC-CCC---eEEEEeCCCcEEEccCCCCC
Q 021453 169 CGHLFIWKKKGGKLVRLMVGDRHV---------VNQLEPHP-HIP---MFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 169 dg~v~iwd~~~~~~~~~~~~~~~~---------v~~v~~~p-~~~---~l~t~~~d~~i~iwd~~~~~ 223 (312)
.+.|.-.|.++|+..-.++..... ..-+.+.. +|+ .++.++.+|.+.+.|.++++
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 456777888899877666531111 11122222 553 68888999999999998876
No 466
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=81.69 E-value=4.6 Score=19.66 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 021453 32 RLNAIVIDPRNPNYFAVGGSDEYARVYD 59 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd 59 (312)
.|.+++..+ .+++.+.+-+.+|+|.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 477888766 5888888889999974
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.33 E-value=0.49 Score=40.91 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=65.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
++....++|..+++..++.+-..+.+.+|++.+..- ..+-.+-...-.-+.|++.+..++.+ ..
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt---------------qqLE~gg~~s~sll~wsKg~~el~ig~~~ 138 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---------------QQLESGGTSSKSLLAWSKGTPELVIGNNA 138 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH---------------HHHhccCcchHHHHhhccCCccccccccc
Confidence 445668899998877777788899999999975431 11111111222237888888877776 58
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021453 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~ 164 (312)
+.+.+++..+. +.....-.|... ++++++ .+.+..+.
T Consensus 139 gn~viynhgts----------------R~iiv~Gkh~RR--gtq~av-~lEd~vil 175 (615)
T KOG2247|consen 139 GNIVIYNHGTS----------------RRIIVMGKHQRR--GTQIAV-TLEDYVIL 175 (615)
T ss_pred cceEEEeccch----------------hhhhhhcccccc--eeEEEe-cccceeee
Confidence 99999998765 232222225544 888888 66655443
No 468
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.14 E-value=5.7 Score=19.88 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=20.1
Q ss_pred CEEEEeccCceEEEEeccCCeeEEE
Q 021453 161 EYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 161 ~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
..++.++.+|.+..+|..+|+.+-.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3577888899999999998886543
No 469
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.40 E-value=9.2 Score=31.30 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=45.7
Q ss_pred CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe------CCCcEEEccCCCCCCCCCCC
Q 021453 169 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG------IEKTVKLWAPMPTDFPPLPD 229 (312)
Q Consensus 169 dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~------~d~~i~iwd~~~~~~~~~~~ 229 (312)
...|++||..+.+....-.+-.+.|+++.|..+.+.++.|. ....+..||+.++....+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 55799999988776655555668899999987767777765 34578889999887655554
No 470
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.52 E-value=17 Score=31.65 Aligned_cols=163 Identities=10% Similarity=0.057 Sum_probs=83.3
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceee-EEEEecCCCCEEEEec
Q 021453 89 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMSGS 167 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~s~~~~~l~~~~ 167 (312)
..+..+-..|+|+.+..-+..++.++++.+.. ++.. +....-.+.. ...|+ .+.. -..|.-+++++
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~------l~~r-----kl~~dspg~~-~~~Vte~l~l-L~Gg~SLLv~~ 287 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRS------LQIR-----KLVDDSPGDS-RHQVTEQLYL-LSGGFSLLVVH 287 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecccc------cchh-----hhhhcCCCch-HHHHHHHHHH-HhCceeEEEEc
Confidence 44566778899997776555788888886641 0000 1111111100 00122 1111 23456688889
Q ss_pred cCceEEEE-eccC-Cee----EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccC
Q 021453 168 DCGHLFIW-KKKG-GKL----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQG 241 (312)
Q Consensus 168 ~dg~v~iw-d~~~-~~~----~~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 241 (312)
.||-|.-| |.+. +++ ++.++-....+..+.-..+.+.+++-+..|++.++.-...+..-+. ..-........+
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~~~~~~~~~~S 366 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RAYQAPQLVAMS 366 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hhhcCcceeeeC
Confidence 99998877 4442 222 2222222233333322223345888888888888775544422111 111122334455
Q ss_pred CCCceeEEecCCceEEEEEecccCc
Q 021453 242 REDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 242 ~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
+...++++- ..+.++++.+.+.+.
T Consensus 367 p~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 367 PNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred cccchheee-cCCceEEEEecCCCC
Confidence 555555543 346788888776643
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.05 E-value=54 Score=28.72 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=36.6
Q ss_pred EEEEeccCceEEEEeccCCeeEEEeecCccce--EEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 162 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV--NQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 162 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
.++.++.++++.||.=. +.+-.-+....+| .-..|......+++-+.+|.+.+-=+.+..
T Consensus 302 ~llV~t~t~~LlVy~d~--~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDT--TLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEEEEecCCeEEEEeCC--eEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 58889999999998633 2222222122232 222333344568888899999998766653
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.01 E-value=53 Score=32.82 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=69.8
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-------CCEEEEeccCceEEEEecc
Q 021453 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-------DEYVMSGSDCGHLFIWKKK 178 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-------~~~l~~~~~dg~v~iwd~~ 178 (312)
+.|+.+.+|+.+++ .....+.+.... |..|...-|. =++++.-+.--.|.++-+.
T Consensus 96 TiDn~L~lWny~~~----------------~e~~~~d~~sht--Il~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESD----------------NELAEYDGLSHT--ILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred EeCCeEEEEEcCCC----------------Cccccccchhhh--heeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 45999999999885 344444443332 4444432222 2333333333445554322
Q ss_pred ----CCee---E--EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC----C----CCC-----------------
Q 021453 179 ----GGKL---V--RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM----P----TDF----------------- 224 (312)
Q Consensus 179 ----~~~~---~--~~~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~----~----~~~----------------- 224 (312)
++.. . ..+......|+++....+|+.|++|- || .+|.+. . .+.
T Consensus 158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred eccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 1111 0 12222345788999888898887775 55 444421 1 100
Q ss_pred CCCC-CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021453 225 PPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
..++ .+..++ .-.........+.+-+..+.+++|++..
T Consensus 235 ~~~~~~~~dpI-~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 LSVPGSSKDPI-RQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcCCCCCCCcc-eeeEeccccceeeeeccCceEEEEEccC
Confidence 0111 111122 1122333455677888889999999876
No 473
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=75.89 E-value=33 Score=28.35 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=50.5
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEecc------CC-eeEEEeec-----CccceEEEEEcCCCC------------eE
Q 021453 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKK------GG-KLVRLMVG-----DRHVVNQLEPHPHIP------------MF 205 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~------~~-~~~~~~~~-----~~~~v~~v~~~p~~~------------~l 205 (312)
-..+++ +|.+.+.++....+...+||.. .. .++..+.. .....+.+.|+.... .+
T Consensus 25 ~WGia~-~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSY-RPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEe-cCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 678998 8999999999999999999986 12 22333332 123567777764332 26
Q ss_pred EEEeCCCcEEEccCCC
Q 021453 206 ATCGIEKTVKLWAPMP 221 (312)
Q Consensus 206 ~t~~~d~~i~iwd~~~ 221 (312)
+.+++||+|.-|...-
T Consensus 104 if~tEdGTisaW~p~v 119 (336)
T TIGR03118 104 LFVTEDGTLSGWAPAL 119 (336)
T ss_pred EEEeCCceEEeecCcC
Confidence 7889999999999643
No 474
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=75.42 E-value=13 Score=32.96 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=46.6
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021453 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 119 (312)
Q Consensus 44 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 119 (312)
-++|+|+..|.|++||.-..+ .+..+.+-...|..+..+.+|+.+.+.....+.+-|+.-.
T Consensus 574 GyIa~as~kGDirLyDRig~r---------------AKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik 634 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKR---------------AKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIK 634 (776)
T ss_pred ceEEEecCCCceeeehhhcch---------------hhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccc
Confidence 389999999999999965432 2333355678899999999999777766778888887644
No 475
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.02 E-value=21 Score=23.43 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=29.2
Q ss_pred eccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021453 166 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 166 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~ 209 (312)
+..+|.+.-||..+++....+.+ -.-.+.|+.+|++..++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 44578999999998876544443 23568999999999866653
No 476
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=74.59 E-value=97 Score=30.96 Aligned_cols=156 Identities=12% Similarity=0.130 Sum_probs=85.4
Q ss_pred cEEEEEe---------CCCeEEEEEccCCeecCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCeEEEecCCcEEE
Q 021453 44 NYFAVGG---------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYNDELVYL 113 (312)
Q Consensus 44 ~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~d~~i~i 113 (312)
.+|++|. ..|.+.|||+-.-- .+.+.|...+..+.+. ...+++|..++= -+| +|+++...+|.+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVV----PepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~GqKI~v 1120 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVV----PEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQGQKIIV 1120 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEec----CCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEccCcEEEE
Confidence 3677763 24889999975311 1112233333333322 233556665542 233 677777889999
Q ss_pred EEcCCCcCCCCCcCCcccccCCCCC-ceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEEEeec--C
Q 021453 114 FEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVG--D 189 (312)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~--~ 189 (312)
|++.... ..+ ..|-.. +.++.++ ..-.++|+.|.--..|.+.-.... ..+..+.. .
T Consensus 1121 ~~l~r~~---------------~ligVaFiD~--~~yv~s~---~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~ 1180 (1366)
T KOG1896|consen 1121 RKLDRDS---------------ELIGVAFIDL--PLYVHSM---KVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFE 1180 (1366)
T ss_pred EEeccCC---------------cceeeEEecc--ceeEEeh---hhhhhheehhhhhhceEEEEEccCceEEEEeecCCc
Confidence 9994431 121 112111 1223333 234677888877777777665432 22222221 1
Q ss_pred ccceEEEEEcCCCCe--EEEEeCCCcEEEccCCCCCCC
Q 021453 190 RHVVNQLEPHPHIPM--FATCGIEKTVKLWAPMPTDFP 225 (312)
Q Consensus 190 ~~~v~~v~~~p~~~~--l~t~~~d~~i~iwd~~~~~~~ 225 (312)
.-.++++.|--+|.. ++.+..|+.|++|-.....+.
T Consensus 1181 ~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~e 1218 (1366)
T KOG1896|consen 1181 PLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIE 1218 (1366)
T ss_pred hhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCcc
Confidence 235778888777754 888889999999876554433
No 477
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.90 E-value=64 Score=28.60 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCeEEEec-CCcEEEEEcCCC
Q 021453 89 IHITGLAYSNTSELLISYN-DELVYLFEKNMG 119 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~ 119 (312)
...+.|+|.|+|++|++-. .|.|++++..+.
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 4567999999999999986 699999986543
No 478
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=73.17 E-value=12 Score=19.74 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=22.2
Q ss_pred EEEEeccCceEEEEeccCCeeEEEeec
Q 021453 162 YVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 162 ~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
.++.++.+|.|+-.|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 356669999999999999998877653
No 479
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=72.99 E-value=52 Score=27.13 Aligned_cols=165 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc
Q 021453 113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 192 (312)
Q Consensus 113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 192 (312)
+|+.... .....+..-..+.-+..+.+ .+++...+..+.-++|.|+.+...-..+..-.-.
T Consensus 68 itn~~~~----------------t~~~l~~~i~~~~l~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~ 128 (370)
T COG5276 68 ITNVSLQ----------------THDVLLSVINARDLFADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD 128 (370)
T ss_pred ccCcccc----------------cCcceEEEEehhhhhheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccCC
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEecccCccceeE
Q 021453 193 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLAYRE 271 (312)
Q Consensus 193 v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~~~~~~~ 271 (312)
=..-.|.-.|++...+..|.-+-+.|+.....-.+.+.-...-...+--. .+++......|+-+.+.|+.....+.+..
T Consensus 129 gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~ 208 (370)
T COG5276 129 GYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIG 208 (370)
T ss_pred ceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEE
Q ss_pred eecCC-CccCCCCCCCeEEEeecCCC
Q 021453 272 RRYNA-ADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 272 ~~~~~-~~~~~~~~~~~v~~~~~~~~ 296 (312)
+...+ ..-..--.+.+.|+++...+
T Consensus 209 ~~n~g~g~~sv~vsdnr~y~vvy~eg 234 (370)
T COG5276 209 SYNTGPGTYSVSVSDNRAYLVVYDEG 234 (370)
T ss_pred EEecCCceEEEEecCCeeEEEEcccc
No 480
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=72.48 E-value=24 Score=33.67 Aligned_cols=82 Identities=15% Similarity=-0.004 Sum_probs=53.2
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCC----CCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021453 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI----SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
...|.++.....+ ..++..-.||+|.++|..+.+.+... .....+.......+...+...+.-++|||.+..++.
T Consensus 259 ~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 4568888887777 68999999999999999988765544 212212221111111122235667899999987777
Q ss_pred e-cCCcEE
Q 021453 106 Y-NDELVY 112 (312)
Q Consensus 106 ~-~d~~i~ 112 (312)
- .++.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 4 677755
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.56 E-value=34 Score=24.41 Aligned_cols=67 Identities=7% Similarity=0.103 Sum_probs=44.0
Q ss_pred EEecCCCCEEEEeccCceEEEEeccCC--------eeEEEeecCccceEEEEEcC---CC--CeEEEEeCCCcEEEccCC
Q 021453 154 NFFGPNDEYVMSGSDCGHLFIWKKKGG--------KLVRLMVGDRHVVNQLEPHP---HI--PMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 154 ~~~s~~~~~l~~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~v~~~p---~~--~~l~t~~~d~~i~iwd~~ 220 (312)
.| +.....|++++..|+|.|++.... ..+..+. -...|++++-.| +. ..|+.| ....|-.||+.
T Consensus 5 kf-DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~ 81 (136)
T PF14781_consen 5 KF-DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVE 81 (136)
T ss_pred Ee-CCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcc
Confidence 45 666778999999999999986532 2334443 345677765433 33 335554 47789999988
Q ss_pred CCC
Q 021453 221 PTD 223 (312)
Q Consensus 221 ~~~ 223 (312)
...
T Consensus 82 ~N~ 84 (136)
T PF14781_consen 82 NNS 84 (136)
T ss_pred cCc
Confidence 765
No 482
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=70.09 E-value=60 Score=26.67 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=36.8
Q ss_pred CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec---CC----cEEEEEcCCC
Q 021453 52 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---DE----LVYLFEKNMG 119 (312)
Q Consensus 52 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---d~----~i~iwd~~~~ 119 (312)
-..|.+||..+.++.... .+-.+.|+.+.|..+.++++++. ++ .+..||..+.
T Consensus 15 C~~lC~yd~~~~qW~~~g---------------~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPG---------------NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CCEEEEEECCCCEeecCC---------------CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 356899999988754221 22367899999997777777753 33 4778888764
No 483
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=69.87 E-value=33 Score=27.62 Aligned_cols=74 Identities=9% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCccceEEEEE------cCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEc-cCC
Q 021453 28 MNSIRLNAIVI------DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTS 100 (312)
Q Consensus 28 ~h~~~v~~~~~------~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 100 (312)
.+...|+||+- .++....|+.|+++|.|.|.|....... ....+......-...-.|. -+.
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il------------~~~~lpsvPv~i~~~G~~devdy 241 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTIL------------KQVQLPSVPVFISVSGQYDEVDY 241 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeE------------EEEecCCCceEEEEEeeeeccce
Q ss_pred CeEEEecCCcEEE
Q 021453 101 ELLISYNDELVYL 113 (312)
Q Consensus 101 ~~l~s~~d~~i~i 113 (312)
++++++.||.|++
T Consensus 242 RI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 242 RIVVACRDGKIYT 254 (257)
T ss_pred EEEEEeCCCEEEE
No 484
>PLN02153 epithiospecifier protein
Probab=69.55 E-value=68 Score=27.07 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=15.9
Q ss_pred cEEEEEeCC-----CeEEEEEccCCeec
Q 021453 44 NYFAVGGSD-----EYARVYDIRKCHWY 66 (312)
Q Consensus 44 ~~l~~~~~d-----~~i~iwd~~~~~~~ 66 (312)
.+++.|+.+ ..+.+||+.+.++.
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 677787753 35778888877653
No 485
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=68.60 E-value=50 Score=31.30 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=44.8
Q ss_pred ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021453 148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
.++.+.+| . +-++.++.+|.|.++...+......+.. |...|+++...-++-+++.++.| .+++++.+
T Consensus 627 lPvrsla~-~---ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhte 697 (925)
T KOG3522|consen 627 LPVRSLAF-Q---EDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTE 697 (925)
T ss_pred ccccchhh-h---hceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccc
Confidence 34778776 2 2345677899999999877655554443 45678999888887776666543 44444433
No 486
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.14 E-value=46 Score=32.88 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=28.8
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe
Q 021453 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 64 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 64 (312)
-+.....++|+|.- .++|.|+..|.|++|-...-+
T Consensus 34 ~~~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQ-GLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCCCcceeecccc-ceEEEEEecccEEEecccceE
Confidence 34566789999987 799999999999999876444
No 487
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=67.73 E-value=31 Score=22.44 Aligned_cols=50 Identities=8% Similarity=0.228 Sum_probs=30.9
Q ss_pred CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC
Q 021453 169 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP 221 (312)
Q Consensus 169 dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t~~-~d~~i~iwd~~~ 221 (312)
-+.|..||.... +.....-...+.+.++|++++|..++ ..+.|++|..+.
T Consensus 35 ~~~Vvyyd~~~~---~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 35 WGNVVYYDGKEV---KVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEEeCCEe---EEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 345555664322 22222223457899999999865554 778999997653
No 488
>PLN02193 nitrile-specifier protein
Probab=67.69 E-value=92 Score=27.84 Aligned_cols=64 Identities=5% Similarity=-0.105 Sum_probs=34.7
Q ss_pred CCCEEEEeccC----ceEEEEeccCCeeEEEeec---Cc--cceEEEEEcCCCCeEEEEeCC--------------CcEE
Q 021453 159 NDEYVMSGSDC----GHLFIWKKKGGKLVRLMVG---DR--HVVNQLEPHPHIPMFATCGIE--------------KTVK 215 (312)
Q Consensus 159 ~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~---~~--~~v~~v~~~p~~~~l~t~~~d--------------~~i~ 215 (312)
+++.++.++.+ ..+.+||+.+.+....-.. .. .....+. -++++++.|+.. ..+.
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEE
Confidence 46666666654 4688999887765332110 11 1111222 255667777743 1367
Q ss_pred EccCCCCCC
Q 021453 216 LWAPMPTDF 224 (312)
Q Consensus 216 iwd~~~~~~ 224 (312)
+||+.+...
T Consensus 406 ~~D~~t~~W 414 (470)
T PLN02193 406 ALDTETLQW 414 (470)
T ss_pred EEEcCcCEE
Confidence 777776654
No 489
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=65.28 E-value=83 Score=26.93 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc--CCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021453 99 TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 99 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
+++.++...+|.|.-+|..++ ..+....... .. +..-.+ -.+|+ ++.++.++.++.+|
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g----------------~~~W~~~~~~~~~~--~~~~~~-~~~G~-i~~g~~~g~~y~ld 127 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTG----------------LVKWSYPLLGAVAQ--LSGPIL-GSDGK-IYVGSWDGKLYALD 127 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCC----------------cEEecccCcCccee--ccCceE-EeCCe-EEEecccceEEEEE
Q ss_pred ccCCeeEEEeecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 177 KKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 177 ~~~~~~~~~~~~~~-~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
.++|+.+-...... ..+.....-.++..++.. .++.+.-.+..++.
T Consensus 128 ~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~ 174 (370)
T COG1520 128 ASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGT 174 (370)
T ss_pred CCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCc
No 490
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=65.12 E-value=14 Score=19.61 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=16.0
Q ss_pred CCCEEEEeccCceEEEEeccC
Q 021453 159 NDEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~ 179 (312)
.+..++.++.||.|+.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 366788899999999999764
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=64.19 E-value=16 Score=17.74 Aligned_cols=25 Identities=12% Similarity=0.416 Sum_probs=17.3
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEE
Q 021453 33 LNAIVIDPRNPNYFAVGGSDEYARVY 58 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d~~i~iw 58 (312)
...++.+++| +++++=+....|++|
T Consensus 4 P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 4577777777 677776777777664
No 492
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=62.40 E-value=1.1e+02 Score=26.84 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021453 192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 192 ~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
.|..++..+..+.+++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388899999889999999999999999975
No 493
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=61.98 E-value=1.5e+02 Score=28.46 Aligned_cols=132 Identities=12% Similarity=0.103 Sum_probs=77.1
Q ss_pred CCCccEEEEEEc---cC----CCeEEEecCCcEEEEEcCCCcC-----CCCCcCCcccccCCCCCceEecc-cCCceeeE
Q 021453 86 KNNIHITGLAYS---NT----SELLISYNDELVYLFEKNMGLG-----PSPLSLSPEDLQKREEPQVYSGH-RNSQTVKG 152 (312)
Q Consensus 86 ~~~~~i~~~~~~---~~----~~~l~s~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 152 (312)
....+|..|+|. .. ..+|+.-....+.|+...-... .....+.. .++..+..+ .+..+..+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~------~~l~~i~~~~tgg~~~aD 150 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDP------NPLLTISSSDTGGFPHAD 150 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCcccccc------ceeEEechhhcCCCccce
Confidence 456789999998 31 1366666778888887332211 00001111 223333321 22234778
Q ss_pred EEEecCCCCEEEEeccCceEEEEeccCCe-----eEEEeecCccc----------eEEEEEcCCCCeEEEEeCCCcEEEc
Q 021453 153 VNFFGPNDEYVMSGSDCGHLFIWKKKGGK-----LVRLMVGDRHV----------VNQLEPHPHIPMFATCGIEKTVKLW 217 (312)
Q Consensus 153 v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~----------v~~v~~~p~~~~l~t~~~d~~i~iw 217 (312)
++|.+.+.+.||.....|.-.||++...+ .+.....+.+. -..+.|.++.+.|+.++ ...+.++
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~ 229 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLI 229 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEE
Confidence 99933456789999999999999992111 11111111122 23688988888887776 4678888
Q ss_pred cCCCCCC
Q 021453 218 APMPTDF 224 (312)
Q Consensus 218 d~~~~~~ 224 (312)
|+.+...
T Consensus 230 d~~~~~~ 236 (765)
T PF10214_consen 230 DFESNWQ 236 (765)
T ss_pred ECCCCCc
Confidence 8887654
No 494
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=60.54 E-value=98 Score=25.72 Aligned_cols=72 Identities=19% Similarity=0.387 Sum_probs=43.9
Q ss_pred ccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc-e--eeEEEEecCCCCEEE
Q 021453 89 IHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ-T--VKGVNFFGPNDEYVM 164 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--v~~v~~~s~~~~~l~ 164 (312)
-.+.++...++|.+|+++. -..|.+.+..++ +.+..+.+..... . -...+| -.+-+++-
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG----------------~I~W~lgG~~~~df~~~~~~f~~-QHdar~~~ 206 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTG----------------KIIWRLGGKRNSDFTLPATNFSW-QHDARFLN 206 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCC----------------cEEEEeCCCCCCcccccCCcEee-ccCCEEec
Confidence 3477888889999999985 788999998877 4555554441110 0 111223 23344444
Q ss_pred EeccCceEEEEec
Q 021453 165 SGSDCGHLFIWKK 177 (312)
Q Consensus 165 ~~~~dg~v~iwd~ 177 (312)
.+..++.|.++|-
T Consensus 207 ~~~~~~~IslFDN 219 (299)
T PF14269_consen 207 ESNDDGTISLFDN 219 (299)
T ss_pred cCCCCCEEEEEcC
Confidence 4456677777775
No 495
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=60.39 E-value=15 Score=34.16 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=28.4
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021453 191 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 191 ~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
..++++.-+|.+..++.++.||.|++|+....+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 456788889999999999999999999976554
No 496
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=59.04 E-value=1.1e+02 Score=25.82 Aligned_cols=66 Identities=9% Similarity=0.150 Sum_probs=43.8
Q ss_pred eeEEEEec------CCCCEEEEeccCceEEEEeccCCeeEEE----eecCccceEEEEEcCCCCeEEEEeCCCcEE
Q 021453 150 VKGVNFFG------PNDEYVMSGSDCGHLFIWKKKGGKLVRL----MVGDRHVVNQLEPHPHIPMFATCGIEKTVK 215 (312)
Q Consensus 150 v~~v~~~s------~~~~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v~~v~~~p~~~~l~t~~~d~~i~ 215 (312)
+..+.|.. -.+.++++.-..+.|....+..+..+.. +.....++.++++.|+|.++++...+|.|.
T Consensus 255 p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 255 PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 66777631 1456777777778888888875543322 223444899999999999988888888774
No 497
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=56.69 E-value=1.2e+02 Score=25.58 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=15.9
Q ss_pred cEEEEEeCC-----------CeEEEEEccCCeec
Q 021453 44 NYFAVGGSD-----------EYARVYDIRKCHWY 66 (312)
Q Consensus 44 ~~l~~~~~d-----------~~i~iwd~~~~~~~ 66 (312)
.+++.|+.+ ..+..||..+.++.
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 678888753 24777888877654
No 498
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=56.22 E-value=1.1e+02 Score=25.05 Aligned_cols=117 Identities=8% Similarity=0.031 Sum_probs=73.1
Q ss_pred CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021453 88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 167 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~ 167 (312)
........|.+.|++-+++..|.---.|... ..++++..... .....++- .|+|...++.-
T Consensus 147 ~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-----------------~~i~vfpaPqG-~gpyGi~a-tpdGsvwyasl 207 (353)
T COG4257 147 DANLETAVFDPWGNLWFTGQIGAYGRLDPAR-----------------NVISVFPAPQG-GGPYGICA-TPDGSVWYASL 207 (353)
T ss_pred CCcccceeeCCCccEEEeeccccceecCccc-----------------CceeeeccCCC-CCCcceEE-CCCCcEEEEec
Confidence 4556778899999877776533322222222 23444443322 22566776 89999888877
Q ss_pred cCceEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 168 DCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 168 ~dg~v~iwd~~~~~~~~~~~---~~~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
.+.-|...|..++... .+. .....-..+--+|.++.-+|....+.+..+|......
T Consensus 208 agnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 208 AGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred cccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccc
Confidence 7777877887766322 222 1122334455578899888888889999999887654
No 499
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=54.97 E-value=2.3e+02 Score=28.16 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=30.0
Q ss_pred CceEEEEec-cCCeeEEEeecC--ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021453 169 CGHLFIWKK-KGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 169 dg~v~iwd~-~~~~~~~~~~~~--~~~v~~v~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
+|.++.|++ +.++.+..+... .++| .+.+|-..++++| ....+++|++...++
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~l 966 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKL 966 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHH
Confidence 455777764 345533333211 1233 4567776654443 468999999877653
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=54.37 E-value=1.1e+02 Score=24.49 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=23.2
Q ss_pred EecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021453 155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
|.-|+|+.++.+..+. .|||..+.+.++.+..
T Consensus 176 ~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 176 HLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPD 207 (243)
T ss_pred EEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence 3479999999888654 3568887777676653
Done!