BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021454
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 125 GVYIVSYDRAGYGESD--PNPNRTVKSDAL--DIEELADQLGVGSKFYVIGYSMGGHPIW 180
G +V +D+ G G S P R DAL D LA+ LGV +F ++ + G
Sbjct: 52 GFRVVYFDQRGSGRSLELPQDPRLFTVDALVEDTLLLAEALGV-ERFGLLAHGFGAVVAL 110
Query: 181 GCLKYIPHRLAGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWAVRVA 230
L+ P GA LLAP VN+ W A L++ A LP + ++ A
Sbjct: 111 EVLRRFPQA-EGAILLAPWVNFPW--LAARLAEAAGLAPLPDPEENLKEA 157
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 25/156 (16%)
Query: 76 RDGRHLAYKEHGVPKDNAKYKIFFVHGFDSCRHDSAVANFLSPEVIEDLGVYIVSYDRAG 135
+DG + +K+ G K + F HG+ D+ + + E + G +++DR G
Sbjct: 6 KDGTQIYFKDWGSGK-----PVLFSHGW---LLDADMWEY-QMEYLSSRGYRTIAFDRRG 56
Query: 136 YGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGHPIWGCLKYIPH----RL 190
+G SD P + A DI +L + L + + ++G+SMGG + +YI R+
Sbjct: 57 FGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDV---ARYIARHGSARV 112
Query: 191 AGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWA 226
AG LL V P K Y Q +P D +A
Sbjct: 113 AGLVLLGAVT-------PLFGQKPDYPQGVPLDVFA 141
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 25/156 (16%)
Query: 76 RDGRHLAYKEHGVPKDNAKYKIFFVHGFDSCRHDSAVANFLSPEVIEDLGVYIVSYDRAG 135
+DG + +K+ G K + F HG+ D+ + + E + G +++DR G
Sbjct: 6 KDGTQIYFKDWGSGK-----PVLFSHGW---LLDADMWEY-QMEYLSSRGYRTIAFDRRG 56
Query: 136 YGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGHPIWGCLKYIPH----RL 190
+G SD P + A DI +L + L + + ++G+SMGG + +YI R+
Sbjct: 57 FGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDV---ARYIARHGSARV 112
Query: 191 AGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWA 226
AG LL V P K Y Q +P D +A
Sbjct: 113 AGLVLLGAVT-------PLFGQKPDYPQGVPLDVFA 141
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 20/134 (14%)
Query: 73 IKLRDGRHLAYKEHGVPKDNAKYKIFFVHG--FDSCRHDSAVANFLSPEVIEDLGVYIVS 130
+ DG ++ YK+ G P+D + F HG + D+ + FLS G +++
Sbjct: 3 VTTSDGTNIFYKDWG-PRDG--LPVVFHHGWPLSADDWDNQMLFFLSH------GYRVIA 53
Query: 131 YDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGHPIWGCLKYI--- 186
+DR G+G SD P+ + + A D+ L + L + + IG+S GG + +Y+
Sbjct: 54 HDRRGHGRSDQPSTGHDMDTYAADVAALTEALDLRGAVH-IGHSTGGGEV---ARYVARA 109
Query: 187 -PHRLAGAGLLAPV 199
P R+A A L++ V
Sbjct: 110 EPGRVAKAVLVSAV 123
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 119 EVIEDLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGH 177
E + G +++DR G+G SD P + A DI +L + L + + ++G+SMGG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 178 PIWGCLKYIPH----RLAGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWA 226
+ +YI R+AG LL V P K Y Q +P D +A
Sbjct: 99 DV---ARYIARHGSARVAGLVLLGAVT-------PLFGQKPDYPQGVPLDVFA 141
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 119 EVIEDLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGH 177
E + G +++DR G+G SD P + A DI +L + L + + ++G+SMGG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 178 PIWGCLKYIPH----RLAGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWA 226
+ +YI R+AG LL V P K Y Q +P D +A
Sbjct: 99 DV---ARYIARHGSARVAGLVLLGAVT-------PIFGQKPDYPQGVPLDVFA 141
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 119 EVIEDLGVYIVSYDRAGYGESD-PNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGH 177
E + G +++DR G+G SD P + A DI +L + L + + ++G+SMGG
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGG 98
Query: 178 PIWGCLKYIPH----RLAGAGLLAPVVNYWWPGFPANLSKEAYYQQLPQDQWA 226
+ +YI R+AG LL V P K Y Q +P D +A
Sbjct: 99 DV---ARYIARHGSARVAGLVLLGAVT-------PLFGQKPDYPQGVPLDVFA 141
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 125 GVYIVSYDRAGYGESDPNPNRTVKSD--ALDIEELADQLGVGSKFYVIGYSMGGH 177
G ++ D G+G+SD N +SD A ++ + DQL + +K +++G SMGGH
Sbjct: 66 GYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDI-AKIHLLGNSMGGH 119
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 22/172 (12%)
Query: 81 LAYKEHG--VPKDNAKYKIFFVHGFDSCRH--DSAVANFLSPEVIEDLGVYIVSYDRAGY 136
L Y++HG VP + +HGF H + A L D G +++YDR G+
Sbjct: 16 LYYEDHGTGVP-------VVLIHGFPLSGHSWERQSAALL------DAGYRVITYDRRGF 62
Query: 137 GE-SDPNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMG-GHPIWGCLKYIPHRLAGAG 194
G+ S P + A D+ + + L + ++G+SMG G Y R+A
Sbjct: 63 GQSSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAAVA 121
Query: 195 LLAPVVNYWWP--GFPANLSKEAYYQQLPQDQWAVRVAHYIPWLTYWWNTQK 244
LA + + P + + ++ + A R A Y + ++N +
Sbjct: 122 FLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDE 173
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 81 LAYKEHGVPKDNAKYKIFFVHGFDSCRH--DSAVANFLSPEVIEDLGVYIVSYDRAGYGE 138
L Y++HG A + +HGF H + A L D G +++YDR G+G+
Sbjct: 15 LYYEDHG-----AGQPVVLIHGFPLSGHSWERQSAALL------DAGYRVITYDRRGFGQ 63
Query: 139 -SDPNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMG-GHPIWGCLKYIPHRLAGAGLL 196
S P + A D+ + + L + ++G+SMG G Y R+A L
Sbjct: 64 SSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAKVAFL 122
Query: 197 APV 199
A +
Sbjct: 123 ASL 125
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 81 LAYKEHGVPKDNAKYKIFFVHGFDSCRH--DSAVANFLSPEVIEDLGVYIVSYDRAGYGE 138
L Y++HG + + +HGF H + A L D G +++YDR G+G+
Sbjct: 15 LYYEDHGTGQ-----PVVLIHGFPLSGHSWERQSAALL------DAGYRVITYDRRGFGQ 63
Query: 139 -SDPNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMG-GHPIWGCLKYIPHRLAGAGLL 196
S P + A D+ + + L + ++G+SMG G Y R+A L
Sbjct: 64 SSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAKVAFL 122
Query: 197 APVVNYWW--PGFPANLSKEAYYQQLPQDQWAVRVAHYIPWLTYWWNTQK 244
A + + P + + ++ + A R A Y + ++N +
Sbjct: 123 ASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDE 172
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 125 GVYIVSYDRAGYGESDPNPNRTVKSDALDIEELA---DQLGVGSKFYVIGYSMGGHPIWG 181
G +++ D GYGES P + +E+ D+LG+ + IG+ GG +W
Sbjct: 66 GYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLVWY 124
Query: 182 CLKYIPHRL-AGAGLLAPVV 200
+ P R+ A A L P +
Sbjct: 125 MALFYPERVRAVASLNTPFI 144
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 125 GVYIVSYDRAGYGESDPNPNRTVKSDALDIEELA---DQLGVGSKFYVIGYSMGGHPIWG 181
G +++ D GYGES P + +E+ D+LG+ + IG+ GG +W
Sbjct: 81 GYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLVWY 139
Query: 182 CLKYIPHRL-AGAGLLAPVV 200
+ P R+ A A L P +
Sbjct: 140 MALFYPERVRAVASLNTPFI 159
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 125 GVYIVSYDRAGYGESDPNPNRTVKSDALDIEELA---DQLGVGSKFYVIGYSMGGHPIWG 181
G +++ D GYGES P + +E+ D+LG+ + IG+ GG +W
Sbjct: 285 GYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLVWY 343
Query: 182 CLKYIPHRL-AGAGLLAPVV 200
+ P R+ A A L P +
Sbjct: 344 MALFYPERVRAVASLNTPFI 363
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 97 IFFVHGFDSCRHDSAVANFLSPEVIEDLGVYIVSY-DRAGYGESDP-NPNRTVKSDALDI 154
I F+HG + + + F P + ++G Y Y D G G SDP +P+ + I
Sbjct: 24 IIFLHGLSLDKQSTCL--FFEP--LSNVGQYQRIYLDLPGXGNSDPISPSTSDNVLETLI 79
Query: 155 EELADQLGVGSKFYVIGYSMGGHPIWGCLKYIPHRLAGAGLLAPVV 200
E + + +G +F + G+S GG+ ++ + G L PV+
Sbjct: 80 EAIEEIIG-ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 81 LAYKEHGVPKDNAKYKIFFVHGFDSCRH--DSAVANFLSPEVIEDLGVYIVSYDRAGYGE 138
L Y++HG + + +HGF H + A L D G +++YDR G+G+
Sbjct: 15 LYYEDHGTGQ-----PVVLIHGFPLSGHSWERQSAALL------DAGYRVITYDRRGFGQ 63
Query: 139 -SDPNPNRTVKSDALDIEELADQLGVGSKFYVIGYSMG-GHPIWGCLKYIPHRLAGAGLL 196
S P + A D+ + + L + ++G+S G G Y R+A L
Sbjct: 64 SSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSTGTGEVARYVSSYGTARIAKVAFL 122
Query: 197 APV 199
A +
Sbjct: 123 ASL 125
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 97 IFFVHGFDSCRHDSAVANFLSPEVIEDLGVYIVSY-DRAGYGESDP-NPNRTVKSDALDI 154
I F+HG + + + F P + ++G Y Y D G G SDP +P+ + I
Sbjct: 24 IIFLHGLSLDKQSTXL--FFEP--LSNVGQYQRIYLDLPGXGNSDPISPSTSDNVLETLI 79
Query: 155 EELADQLGVGSKFYVIGYSMGGHPIWGCLKYIPHRLAGAGLLAPVV 200
E + + +G +F + G+S GG+ ++ + G L PV+
Sbjct: 80 EAIEEIIG-ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 73 IKLRDGRHLAYKEHGVPKDNAKYKIFFVHG--FDSCRHDSAVANFLSPEVIEDLGVYIVS 130
+ +DG + YK+ G P+D I F HG + D+ + FL+ G +V+
Sbjct: 4 VTTKDGVQIFYKDWG-PRDAPV--IHFHHGWPLSADDWDAQLLFFLA------HGYRVVA 54
Query: 131 YDRAGYGESDPN-PNRTVKSDALDIEELADQLGVGSKFYVIGYSMGGHPIWGCLKYIPH- 188
+DR G+G S + A D+ + LG+ +V G+S GG + + P
Sbjct: 55 HDRRGHGRSSQVWDGHDMDHYADDVAAVVAHLGIQGAVHV-GHSTGGGEVVRYMARHPED 113
Query: 189 RLAGAGLLA--PVVNYWWPGFPANLSKEAY 216
++A A L+A P + PG P L K +
Sbjct: 114 KVAKAVLIAAVPPLMVQTPGNPGGLPKSVF 143
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 64 GGPAVTAPRIKLRDGRHLAYKE-HGVPKDNAKYKIFFVHGFDSCRHDSAVANFLSPEVIE 122
GGPA P + + D + H + KDNAKY F++ + +A +
Sbjct: 295 GGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHV------ 348
Query: 123 DLGVYIVSYDRAGYGESDPNPNRT 146
+ +Y + D+ G E PN T
Sbjct: 349 -IDIYACALDQTGLLEMKCCPNLT 371
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 64 GGPAVTAPRIKLRDGRHLAYKE-HGVPKDNAKYKIFFVHGFDSCRHDSAVANFLSPEVIE 122
GGPA P + + D + H + KDNAKY F++ + +A +
Sbjct: 291 GGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHV------ 344
Query: 123 DLGVYIVSYDRAGYGESDPNPNRT 146
+ +Y + D+ G E PN T
Sbjct: 345 -IDIYACALDQTGLLEMKCCPNLT 367
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 64 GGPAVTAPRIKLRDGRHLAYKE-HGVPKDNAKYKIFFVHGFDSCRHDSAVANFLSPEVIE 122
GGPA P + + D + H + KDNAKY F++ + +A +
Sbjct: 291 GGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHV------ 344
Query: 123 DLGVYIVSYDRAGYGESDPNPNRT 146
+ +Y + D+ G E PN T
Sbjct: 345 -IDIYACALDQTGLLEMKCCPNLT 367
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 97 IFFVHGFDSCRHDSAVANFLSPEVIEDLGVYIVSYDRAGYGESDPNPNRTVKSDALDIEE 156
I VHG + V L+ +++ D I+ D +G S P + A D+ +
Sbjct: 19 IVLVHGLFGSLDNLGV---LARDLVNDHN--IIQVDVRNHGLSPREPVMNYPAMAQDLVD 73
Query: 157 LADQLGVGSKFYVIGYSMGGHPIWGCLKYIPHRL 190
D L + K IG+SMGG + P R+
Sbjct: 74 TLDALQI-DKATFIGHSMGGKAVMALTALAPDRI 106
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 98 FFVHGF-DSCRHD---SAVANFLSPEVIEDLGVYIVSYDRAGYGESDPNPNRTVKSDALD 153
F +HGF D D + N E + + V R GY ++ N A
Sbjct: 73 FIIHGFIDKGEEDWLSNICKNLFKVESVNCICVDWKGGSRTGYTQASQNIRIVGAEVAYF 132
Query: 154 IEELADQLGVG-SKFYVIGYSMGGH 177
+E L LG S +VIG+S+G H
Sbjct: 133 VEVLKSSLGYSPSNVHVIGHSLGSH 157
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 88 VPKDNAKY--KIFFVHGF---DSCRHDSAVANFLSPEVIEDLGVYIVSYDRAGYGESDPN 142
+PK+N + +HGF RH AV E + ++GV + D G+G+SD
Sbjct: 19 MPKNNPEKCPLCIIIHGFTGHSEERHIVAVQ-----ETLNEIGVATLRADMYGHGKSDGK 73
Query: 143 -PNRTV---KSDALDIEELADQLGVGSKFYVIGYSMGG 176
+ T+ ++ L + + A +L + Y+ G+S GG
Sbjct: 74 FEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGG 111
>pdb|1L3X|A Chain A, Solution Structure Of Novel Disintegrin Salmosin
Length = 73
Score = 28.5 bits (62), Expect = 4.5, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 60 CGSPGGPAVTAPRIKLRDGRHLA 82
CGSPG P A KLR G A
Sbjct: 8 CGSPGNPCCDAATCKLRQGAQCA 30
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|B Chain B, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|C Chain C, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|D Chain D, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|E Chain E, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|F Chain F, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
Length = 256
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 150 DALDIEELADQLGVGSKFYVIGYSMGGHPIW-GCLKY---IPHRLA-GAGLLAPVVN 201
D + I +LA+Q+ SK Y++ +GG IW G + + LA G++A ++N
Sbjct: 45 DFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIIN 101
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 156 ELADQLGVGSKFYVIGYSMGGHPIWGCLKYIPHRLAGAGLLAPVVNY 202
++ D LG+ K + IG S+GG L P R+ A +L+P +
Sbjct: 126 DVFDNLGI-EKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPAETF 171
>pdb|2VAT|A Chain A, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|B Chain B, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|C Chain C, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|D Chain D, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|E Chain E, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|F Chain F, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|G Chain G, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|H Chain H, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|I Chain I, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|J Chain J, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|K Chain K, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|L Chain L, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
Length = 444
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 143 PNRTVKSDALDIEELADQLGVGSKFYVIGYSMGG 176
P T++ D ++ D+LGV V+G SMGG
Sbjct: 178 PRTTIRDDVRIHRQVLDRLGVRQIAAVVGASMGG 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,480,084
Number of Sequences: 62578
Number of extensions: 479153
Number of successful extensions: 936
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 38
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)