Query 021455
Match_columns 312
No_of_seqs 173 out of 735
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 04:23:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 7.3E-17 2.5E-21 122.0 5.1 43 168-211 2-44 (63)
2 4gat_A Nitrogen regulatory pro 99.6 1.4E-16 4.9E-21 121.2 4.2 43 170-213 6-48 (66)
3 2vut_I AREA, nitrogen regulato 99.6 1.6E-16 5.4E-21 112.0 1.2 38 174-212 2-39 (43)
4 1gnf_A Transcription factor GA 99.6 3.7E-16 1.3E-20 111.6 1.7 38 172-210 3-40 (46)
5 2kae_A GATA-type transcription 99.5 2.2E-15 7.4E-20 116.3 3.9 45 169-213 4-48 (71)
6 4hc9_A Trans-acting T-cell-spe 99.4 9.1E-14 3.1E-18 115.0 4.3 44 169-213 55-98 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 6.1E-12 2.1E-16 104.1 5.7 36 171-207 3-38 (115)
8 3cw2_K Translation initiation 65.2 2.9 9.8E-05 35.5 2.1 31 173-204 103-133 (139)
9 2d74_B Translation initiation 62.6 2.8 9.5E-05 36.0 1.5 30 174-204 105-134 (148)
10 1nee_A EIF-2-beta, probable tr 56.6 2.9 9.8E-05 35.4 0.6 29 174-203 103-131 (138)
11 1dl6_A Transcription factor II 54.1 4 0.00014 29.5 0.9 31 172-205 10-40 (58)
12 1k81_A EIF-2-beta, probable tr 53.9 1.3 4.6E-05 29.5 -1.5 28 175-203 2-29 (36)
13 3k7a_M Transcription initiatio 50.6 5.3 0.00018 37.2 1.4 32 173-205 21-52 (345)
14 2b0o_E UPLC1; arfgap, structur 49.0 7.1 0.00024 34.6 1.9 33 173-207 42-74 (301)
15 2owa_A Arfgap-like finger doma 41.0 13 0.00044 31.4 2.2 33 173-207 36-68 (138)
16 2iqj_A Stromal membrane-associ 40.3 14 0.00049 30.8 2.3 34 173-208 27-60 (134)
17 3dwd_A ADP-ribosylation factor 39.6 19 0.00065 30.9 3.0 34 173-208 38-71 (147)
18 2crr_A Stromal membrane-associ 39.3 17 0.00059 30.6 2.7 34 173-208 29-62 (141)
19 1pft_A TFIIB, PFTFIIBN; N-term 38.4 6.4 0.00022 26.9 -0.1 30 173-205 5-34 (50)
20 2g2k_A EIF-5, eukaryotic trans 37.6 4.9 0.00017 35.3 -0.9 31 174-204 97-128 (170)
21 3cng_A Nudix hydrolase; struct 36.4 9.3 0.00032 31.5 0.6 31 172-202 2-32 (189)
22 2olm_A Nucleoporin-like protei 36.4 13 0.00044 31.3 1.4 33 173-207 25-57 (140)
23 2crw_A ARF GAP 3, ADP-ribosyla 34.3 24 0.00083 30.1 2.9 33 173-207 29-61 (149)
24 2p57_A GTPase-activating prote 34.1 17 0.00057 31.1 1.8 33 173-207 37-69 (144)
25 2e9h_A EIF-5, eukaryotic trans 33.0 7.4 0.00025 33.7 -0.6 31 174-204 104-135 (157)
26 2yrk_A Zinc finger homeobox pr 28.9 7.6 0.00026 28.7 -1.0 18 189-206 7-24 (55)
27 4bbr_M Transcription initiatio 25.5 12 0.0004 35.2 -0.6 30 174-204 22-51 (345)
28 1pqv_S STP-alpha, transcriptio 23.7 13 0.00044 34.6 -0.7 34 173-206 268-307 (309)
29 3sub_A ADP-ribosylation factor 23.4 40 0.0014 29.4 2.3 33 173-207 22-54 (163)
30 3k1f_M Transcription initiatio 21.6 18 0.00063 32.5 -0.1 32 173-205 21-52 (197)
31 3o47_A ADP-ribosylation factor 21.4 42 0.0014 30.4 2.2 34 173-208 37-70 (329)
32 3jue_A Arfgap with coiled-coil 20.1 59 0.002 30.1 2.9 33 173-207 45-77 (368)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.65 E-value=7.3e-17 Score=121.97 Aligned_cols=43 Identities=35% Similarity=0.781 Sum_probs=38.0
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCCcccchhHHHHHHHhhHH
Q 021455 168 NSNNTMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARRA 211 (312)
Q Consensus 168 ~s~~~~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk~~k~ 211 (312)
++......|.+|++++||+||+||+|+ +|||||||+|++++..
T Consensus 2 ~~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~ 44 (63)
T 3dfx_A 2 AARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNIN 44 (63)
T ss_dssp CCCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSC
T ss_pred CCCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCC
Confidence 456678899999999999999999996 9999999999995543
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.63 E-value=1.4e-16 Score=121.20 Aligned_cols=43 Identities=42% Similarity=0.859 Sum_probs=37.3
Q ss_pred CCCCcccccCCCCCCCccccCCCCCcccchhHHHHHHHhhHHHH
Q 021455 170 NNTMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARRAMQ 213 (312)
Q Consensus 170 ~~~~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk~~k~~~ 213 (312)
.+..+.|++|+|++||+||+||+|. +|||||||||+++.+.++
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP 48 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRP 48 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSCCC
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCCCc
Confidence 4568999999999999999999996 999999999998544333
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.59 E-value=1.6e-16 Score=112.05 Aligned_cols=38 Identities=45% Similarity=0.964 Sum_probs=34.2
Q ss_pred cccccCCCCCCCccccCCCCCcccchhHHHHHHHhhHHH
Q 021455 174 RACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARRAM 212 (312)
Q Consensus 174 r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk~~k~~ 212 (312)
+.|++|++++||+||+||+|+ +|||||||||+++++.+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~R 39 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVR 39 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSCC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCCC
Confidence 679999999999999999996 99999999999965443
No 4
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.57 E-value=3.7e-16 Score=111.62 Aligned_cols=38 Identities=42% Similarity=0.974 Sum_probs=34.4
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhHHHHHHHhhH
Q 021455 172 TMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARR 210 (312)
Q Consensus 172 ~~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk~~k 210 (312)
..+.|++|++++||+||+||+|+ +|||||||||+++.+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ 40 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence 46789999999999999999996 999999999999543
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.54 E-value=2.2e-15 Score=116.26 Aligned_cols=45 Identities=36% Similarity=0.529 Sum_probs=34.2
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCcccchhHHHHHHHhhHHHH
Q 021455 169 SNNTMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARRAMQ 213 (312)
Q Consensus 169 s~~~~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk~~k~~~ 213 (312)
+......|+||+|++||+||+|+.+..+|||||||||+++.+.++
T Consensus 4 ~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP 48 (71)
T 2kae_A 4 MNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRP 48 (71)
T ss_dssp ----CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCC
T ss_pred CCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCCCC
Confidence 456789999999999999999543334999999999999665544
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.41 E-value=9.1e-14 Score=115.00 Aligned_cols=44 Identities=34% Similarity=0.761 Sum_probs=38.1
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCcccchhHHHHHHHhhHHHH
Q 021455 169 SNNTMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARRAMQ 213 (312)
Q Consensus 169 s~~~~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk~~k~~~ 213 (312)
.......|++|+|+.||+||+||+| ++|||||||||+++...++
T Consensus 55 ~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp 98 (115)
T 4hc9_A 55 ARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRP 98 (115)
T ss_dssp CCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCC
T ss_pred cccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCCCC
Confidence 3455789999999999999999999 8999999999999655444
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.24 E-value=6.1e-12 Score=104.05 Aligned_cols=36 Identities=44% Similarity=1.024 Sum_probs=31.7
Q ss_pred CCCcccccCCCCCCCccccCCCCCcccchhHHHHHHH
Q 021455 171 NTMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 207 (312)
Q Consensus 171 ~~~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk 207 (312)
..++.|.||+++.||+||+||+| .+|||||||||++
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl 38 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKM 38 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHH
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhh
Confidence 35789999999999999999999 7999999999987
No 8
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=65.16 E-value=2.9 Score=35.48 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=22.1
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIR 204 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~ 204 (312)
-..|..|+...|-+-+.+..= -.-|+|||-.
T Consensus 103 yVlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp CSSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred eeECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 367999999999999875433 5789999964
No 9
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=62.57 E-value=2.8 Score=35.97 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=24.2
Q ss_pred cccccCCCCCCCccccCCCCCcccchhHHHH
Q 021455 174 RACSDCNTTTTPLWRSGPRGPKSLCNACGIR 204 (312)
Q Consensus 174 r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~ 204 (312)
..|..|+...|-+-+.+..- -.-|+|||-.
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCCC
Confidence 57999999999999865433 5789999853
No 10
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=56.65 E-value=2.9 Score=35.44 Aligned_cols=29 Identities=34% Similarity=0.729 Sum_probs=23.6
Q ss_pred cccccCCCCCCCccccCCCCCcccchhHHH
Q 021455 174 RACSDCNTTTTPLWRSGPRGPKSLCNACGI 203 (312)
Q Consensus 174 r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL 203 (312)
..|..|+...|-+-+.+..= -.-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCC
Confidence 57999999999999865333 478999984
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=54.06 E-value=4 Score=29.51 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=21.2
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhHHHHH
Q 021455 172 TMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 205 (312)
Q Consensus 172 ~~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~ 205 (312)
....|.+|+.+. +-.....| ..+|..||+-+
T Consensus 10 ~~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl 40 (58)
T 1dl6_A 10 PRVTCPNHPDAI--LVEDYRAG-DMICPECGLVV 40 (58)
T ss_dssp SCCSBTTBSSSC--CEECSSSC-CEECTTTCCEE
T ss_pred ccccCcCCCCCc--eeEeCCCC-eEEeCCCCCEE
Confidence 345799998654 44455556 58899998754
No 12
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=53.93 E-value=1.3 Score=29.48 Aligned_cols=28 Identities=29% Similarity=0.668 Sum_probs=21.5
Q ss_pred ccccCCCCCCCccccCCCCCcccchhHHH
Q 021455 175 ACSDCNTTTTPLWRSGPRGPKSLCNACGI 203 (312)
Q Consensus 175 ~CsnC~Tt~TP~WRrGP~G~~~LCNACGL 203 (312)
.|..|+..+|-+=+++..- -.-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 5999999999998865322 356999984
No 13
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=50.59 E-value=5.3 Score=37.24 Aligned_cols=32 Identities=19% Similarity=0.582 Sum_probs=20.5
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 205 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~ 205 (312)
...|.+|+...+-+-.+-..| ..+|..||+-+
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEc
Confidence 446888887643333344566 58888888843
No 14
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=49.03 E-value=7.1 Score=34.63 Aligned_cols=33 Identities=30% Similarity=0.663 Sum_probs=26.8
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 207 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk 207 (312)
...|.+|+... |.|-.-.-| ..+|-.|--.-|.
T Consensus 42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~ 74 (301)
T 2b0o_E 42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRE 74 (301)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHh
Confidence 45699999965 999999999 6999999654443
No 15
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=40.96 E-value=13 Score=31.37 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=28.0
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 207 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk 207 (312)
.+.|.+|+... |.|-.-.-| -.+|-.|.-..|.
T Consensus 36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~ 68 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRK 68 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHT
T ss_pred CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhC
Confidence 45699999875 999999999 6999999877765
No 16
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=40.31 E-value=14 Score=30.83 Aligned_cols=34 Identities=29% Similarity=0.644 Sum_probs=28.5
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHHh
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 208 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk~ 208 (312)
.+.|.+|+... |.|-.-.-| -.+|-.|.-..|..
T Consensus 27 N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~l 60 (134)
T 2iqj_A 27 NKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNL 60 (134)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcC
Confidence 46799999874 999999999 69999998777663
No 17
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=39.64 E-value=19 Score=30.91 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=28.5
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHHh
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 208 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk~ 208 (312)
.+.|.+|+... |.|-.-.-| -.+|-.|.-..|..
T Consensus 38 N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~L 71 (147)
T 3dwd_A 38 NNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGL 71 (147)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcC
Confidence 45799999875 999999999 69999998776653
No 18
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.30 E-value=17 Score=30.55 Aligned_cols=34 Identities=29% Similarity=0.639 Sum_probs=27.9
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHHh
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 208 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk~ 208 (312)
.+.|++|+.. -|.|-.-..| -.+|-.|.-..|..
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 62 (141)
T 2crr_A 29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNL 62 (141)
T ss_dssp GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHH
T ss_pred CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcC
Confidence 3569999986 5999999999 69999998766653
No 19
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=38.43 E-value=6.4 Score=26.92 Aligned_cols=30 Identities=27% Similarity=0.700 Sum_probs=17.9
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 205 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~ 205 (312)
...|-+|+.+ ++-.....| ...|..||+-|
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcc
Confidence 3458888663 343333445 57888888754
No 20
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=37.63 E-value=4.9 Score=35.26 Aligned_cols=31 Identities=29% Similarity=0.670 Sum_probs=23.4
Q ss_pred cccccCCCCCCCccccCCCCC-cccchhHHHH
Q 021455 174 RACSDCNTTTTPLWRSGPRGP-KSLCNACGIR 204 (312)
Q Consensus 174 r~CsnC~Tt~TP~WRrGP~G~-~~LCNACGL~ 204 (312)
..|..|+...|-+-+....+- -.-|+|||-.
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 569999999999998422221 3679999965
No 21
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=36.43 E-value=9.3 Score=31.51 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=25.7
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchhHH
Q 021455 172 TMRACSDCNTTTTPLWRSGPRGPKSLCNACG 202 (312)
Q Consensus 172 ~~r~CsnC~Tt~TP~WRrGP~G~~~LCNACG 202 (312)
..+-|..|++..+.....|..+....|-.||
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred CcccCchhCCccccccccCCCCcceECCCCC
Confidence 3578999999998877778777778999999
No 22
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=36.37 E-value=13 Score=31.34 Aligned_cols=33 Identities=27% Similarity=0.605 Sum_probs=27.6
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 207 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk 207 (312)
.+.|.+|+.. -|.|-.-.-| -.+|-.|.-..|.
T Consensus 25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred CCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 4569999986 6999999999 6999999876655
No 23
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.33 E-value=24 Score=30.12 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=27.9
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 207 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk 207 (312)
.+.|.+|+.. -|.|-.-..| -.+|-.|.-..|.
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (149)
T 2crw_A 29 NKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRS 61 (149)
T ss_dssp TSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHH
T ss_pred CCcCCCCcCC-CCCcEEeccC-EEEchhcchhhcc
Confidence 4579999975 6999999999 6999999877766
No 24
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=34.07 E-value=17 Score=31.10 Aligned_cols=33 Identities=36% Similarity=0.711 Sum_probs=27.9
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 207 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk 207 (312)
.+.|.+|+.. -|.|-.-..| -.+|-.|.-..|.
T Consensus 37 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 69 (144)
T 2p57_A 37 NKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRS 69 (144)
T ss_dssp GGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcC
Confidence 4579999986 5999999999 6999999887766
No 25
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.00 E-value=7.4 Score=33.70 Aligned_cols=31 Identities=29% Similarity=0.641 Sum_probs=22.7
Q ss_pred cccccCCCCCCCccccCCCC-CcccchhHHHH
Q 021455 174 RACSDCNTTTTPLWRSGPRG-PKSLCNACGIR 204 (312)
Q Consensus 174 r~CsnC~Tt~TP~WRrGP~G-~~~LCNACGL~ 204 (312)
..|..|+...|-+-+....+ --.-|+|||-.
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCC
Confidence 56999999999998732222 14679999853
No 26
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=28.89 E-value=7.6 Score=28.68 Aligned_cols=18 Identities=33% Similarity=0.872 Sum_probs=14.6
Q ss_pred cCCCCCcccchhHHHHHH
Q 021455 189 SGPRGPKSLCNACGIRQR 206 (312)
Q Consensus 189 rGP~G~~~LCNACGL~~r 206 (312)
.+|+||++-|.-||..|-
T Consensus 7 ~~~~~P~~eC~lC~vkYs 24 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYS 24 (55)
T ss_dssp CCCCCCCSCCTTTTCCCC
T ss_pred CCCCCCCccccccCcccc
Confidence 578888889999998764
No 27
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=25.49 E-value=12 Score=35.19 Aligned_cols=30 Identities=20% Similarity=0.620 Sum_probs=18.5
Q ss_pred cccccCCCCCCCccccCCCCCcccchhHHHH
Q 021455 174 RACSDCNTTTTPLWRSGPRGPKSLCNACGIR 204 (312)
Q Consensus 174 r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~ 204 (312)
..|.+|+...+-+--+-..| .++|..||+-
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlV 51 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEG-DVVCALCGLV 51 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGT-EEEETTTCBE
T ss_pred CcCCCCCCCCCceeEECCCC-cEEeCCCCCC
Confidence 35888876434343344556 5788888874
No 28
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=23.65 E-value=13 Score=34.61 Aligned_cols=34 Identities=26% Similarity=0.574 Sum_probs=25.5
Q ss_pred CcccccCCCCCCCcc----ccCCCCC--cccchhHHHHHH
Q 021455 173 MRACSDCNTTTTPLW----RSGPRGP--KSLCNACGIRQR 206 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~W----RrGP~G~--~~LCNACGL~~r 206 (312)
...|..|+-...-.| |...+|- -+.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 457999998887665 5565553 369999999885
No 29
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=23.38 E-value=40 Score=29.41 Aligned_cols=33 Identities=33% Similarity=0.650 Sum_probs=27.5
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 207 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk 207 (312)
.+.|++|+.. -|.|-.-.-| -.+|-.|.-..|.
T Consensus 22 N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~ 54 (163)
T 3sub_A 22 NNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRS 54 (163)
T ss_dssp GGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred CCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcC
Confidence 4569999986 6999999999 6999999766654
No 30
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=21.60 E-value=18 Score=32.48 Aligned_cols=32 Identities=19% Similarity=0.582 Sum_probs=22.9
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 205 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~ 205 (312)
...|..|+...+-+--.-..| ..+|..||+-+
T Consensus 21 ~~~CPECGs~~t~IV~D~erG-E~VCsdCGLVL 52 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGT-EEEETTTCBBC
T ss_pred CeECcCCCCcCCeEEEeCCCC-EEEEcCCCCCc
Confidence 447999998654444444456 69999999965
No 31
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=21.36 E-value=42 Score=30.37 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=27.6
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHHh
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 208 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk~ 208 (312)
.+.|++|+.. -|.|-.-.-| -.+|-.|.-..|..
T Consensus 37 n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 37 NNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRGL 70 (329)
T ss_dssp TTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHH
T ss_pred CCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhccc
Confidence 4569999985 6799999999 69999998766653
No 32
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=20.12 E-value=59 Score=30.12 Aligned_cols=33 Identities=33% Similarity=0.693 Sum_probs=27.4
Q ss_pred CcccccCCCCCCCccccCCCCCcccchhHHHHHHH
Q 021455 173 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 207 (312)
Q Consensus 173 ~r~CsnC~Tt~TP~WRrGP~G~~~LCNACGL~~rk 207 (312)
.+.|.+|+.. -|.|-.-.-| -.+|-.|.-..|.
T Consensus 45 n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~ 77 (368)
T 3jue_A 45 NAQCCDCREP-APEWASINLG-VTLCIQCSGIHRS 77 (368)
T ss_dssp TTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred cCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHhc
Confidence 5679999985 6999999999 6999999765554
Done!