Query 021456
Match_columns 312
No_of_seqs 186 out of 421
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 04:24:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021456.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021456hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uowa_ b.7.1.2 (A:) Synaptoga 13.5 30 0.0022 26.1 1.3 20 70-89 123-144 (157)
2 d1dqva2 b.7.1.2 (A:425-569) Sy 10.9 37 0.0027 25.0 1.0 22 68-89 117-140 (145)
3 d1w15a_ b.7.1.2 (A:) Synaptota 10.0 47 0.0034 24.2 1.3 20 70-89 113-134 (138)
4 d2gmqa1 b.122.1.11 (A:12-113) 9.0 28 0.002 25.4 -0.4 10 297-306 91-100 (102)
5 d1u19a_ f.13.1.2 (A:) Rhodopsi 7.6 1.2E+02 0.0084 24.2 3.0 23 260-282 247-269 (348)
6 d1ppjc1 f.32.1.1 (C:261-379) M 7.3 35 0.0026 25.7 -0.6 22 262-283 27-48 (119)
7 d1t07a_ d.279.1.1 (A:) Hypothe 6.9 57 0.0042 23.2 0.5 8 100-107 18-25 (81)
8 d3cx5h1 f.23.13.1 (H:2-94) Ubi 6.5 1.2E+02 0.0085 22.0 2.1 18 234-251 51-68 (93)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 6.1 2.2E+02 0.016 16.8 2.8 18 45-62 12-32 (34)
10 d1wmhb_ d.15.2.2 (B:) Partitio 5.8 1.4E+02 0.01 21.1 2.1 29 67-96 24-55 (82)
No 1
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.55 E-value=30 Score=26.08 Aligned_cols=20 Identities=30% Similarity=0.818 Sum_probs=16.0
Q ss_pred hhhhHHHHHhccC--Ccccccc
Q 021456 70 EAQRHWMEITLNL--PVLEWYR 89 (312)
Q Consensus 70 EaqRhWmeiT~~L--Pi~~WY~ 89 (312)
+-.+||.++..+. |+.+||.
T Consensus 123 ~~~~hW~~~~~~~~~~v~~Wh~ 144 (157)
T d1uowa_ 123 AELRHWSDMLANPRRPIAQWHT 144 (157)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEE
T ss_pred hhHHHHHHHHhCCCCceeEeEe
Confidence 4579999987664 8899994
No 2
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.88 E-value=37 Score=25.02 Aligned_cols=22 Identities=36% Similarity=0.777 Sum_probs=16.4
Q ss_pred chhhhhHHHHHhcc--CCcccccc
Q 021456 68 DYEAQRHWMEITLN--LPVLEWYR 89 (312)
Q Consensus 68 DfEaqRhWmeiT~~--LPi~~WY~ 89 (312)
+-+..+||.++..+ .|+.+||.
T Consensus 117 ~~~~~~~W~~l~~~p~~~i~~Wh~ 140 (145)
T d1dqva2 117 DPHGREHWAEMLANPRKPVEHWHQ 140 (145)
T ss_dssp CHHHHHHHHTSSSSSSSCSCSCCC
T ss_pred CchhhHHHHHHHhCCCCeeeEeEE
Confidence 45557899998544 38999995
No 3
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.99 E-value=47 Score=24.21 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=15.2
Q ss_pred hhhhHHHHHhcc--CCcccccc
Q 021456 70 EAQRHWMEITLN--LPVLEWYR 89 (312)
Q Consensus 70 EaqRhWmeiT~~--LPi~~WY~ 89 (312)
+..+||.++..+ .|+.+||.
T Consensus 113 ~~~~hW~~ll~~~~k~i~~Wh~ 134 (138)
T d1w15a_ 113 SGGGHWKEICDFPRRQIAKWHM 134 (138)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEE
T ss_pred chHHHHHHHHhCCCCeeeECeE
Confidence 456899987654 59999995
No 4
>d2gmqa1 b.122.1.11 (A:12-113) Uncharacterized protein PrgU {Enterococcus faecalis [TaxId: 1351]}
Probab=9.02 E-value=28 Score=25.43 Aligned_cols=10 Identities=40% Similarity=1.152 Sum_probs=5.8
Q ss_pred CCCCCchhhh
Q 021456 297 PFERGIYEDY 306 (312)
Q Consensus 297 Pf~RGL~ed~ 306 (312)
|.+||.||||
T Consensus 91 ~I~R~~~~~~ 100 (102)
T d2gmqa1 91 PINRGVFEEI 100 (102)
T ss_dssp CCBHHHHHHH
T ss_pred ccchhhhHhh
Confidence 5556666655
No 5
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.62 E-value=1.2e+02 Score=24.22 Aligned_cols=23 Identities=22% Similarity=0.602 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhh
Q 021456 260 IHGVAKLGLTVLGTFTVVWWPYL 282 (312)
Q Consensus 260 ~~rl~~lg~~Vi~tf~l~f~PFl 282 (312)
-+|..+..++++++|.++|.|+.
T Consensus 247 ~~~~~~~~~~i~~~f~~~~~P~~ 269 (348)
T d1u19a_ 247 EKEVTRMVIIMVIAFLICWLPYA 269 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhheEEEeehHHHHHhhHHH
Confidence 36788999999999999999975
No 6
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.28 E-value=35 Score=25.71 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhh
Q 021456 262 GVAKLGLTVLGTFTVVWWPYLH 283 (312)
Q Consensus 262 rl~~lg~~Vi~tf~l~f~PFl~ 283 (312)
|+..+-+.+.+...+.++|+++
T Consensus 27 K~gGvl~m~~si~il~~lP~l~ 48 (119)
T d1ppjc1 27 KLGGVLALAFSILILALIPLLH 48 (119)
T ss_dssp HHHHHHHHHHHHHGGGTHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555556666778873
No 7
>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.86 E-value=57 Score=23.16 Aligned_cols=8 Identities=63% Similarity=1.198 Sum_probs=6.6
Q ss_pred ccCCCchH
Q 021456 100 GLDYPPLT 107 (312)
Q Consensus 100 gLDYPPl~ 107 (312)
|||+||+-
T Consensus 18 gLd~pP~P 25 (81)
T d1t07a_ 18 GLDRPPYP 25 (81)
T ss_dssp BCSSCSSS
T ss_pred CCCCCCCC
Confidence 78999974
No 8
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.45 E-value=1.2e+02 Score=21.96 Aligned_cols=18 Identities=11% Similarity=-0.214 Sum_probs=14.8
Q ss_pred chhhhHHHHHHHHHHHHh
Q 021456 234 HKQMSVYYAPAFFSHLLG 251 (312)
Q Consensus 234 fKqm~LY~AP~~F~yLL~ 251 (312)
+|+..||.+|+|.+..+-
T Consensus 51 ~r~q~lyv~PPfi~~Y~i 68 (93)
T d3cx5h1 51 FKSQFLYVLIPAGIYWYW 68 (93)
T ss_dssp HHTTHHHHHHHHHHHHHH
T ss_pred hhhhceEEcchHHHHHHH
Confidence 688999999998877654
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.06 E-value=2.2e+02 Score=16.78 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=11.1
Q ss_pred HHHHHHHHhc---CCCCCCCC
Q 021456 45 ALLVRVAVSL---HPYSGAGS 62 (312)
Q Consensus 45 ~~llR~~v~l---~~ySG~~~ 62 (312)
++..=..+|+ |+|||-|.
T Consensus 12 G~~vi~~vG~FfYGsYsGlGS 32 (34)
T d2axtj1 12 GMGVIVIVGLFFYGAYAGLGS 32 (34)
T ss_dssp HHHHHHHHHHHHHHTTTSTTS
T ss_pred hhhhHhheeeeeeeeeccccc
Confidence 3444444554 99999764
No 10
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.76 E-value=1.4e+02 Score=21.08 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=23.6
Q ss_pred cchhhhhHHHHHhccC---CcccccccccccCC
Q 021456 67 GDYEAQRHWMEITLNL---PVLEWYRNSTSNDL 96 (312)
Q Consensus 67 gDfEaqRhWmeiT~~L---Pi~~WY~~~ts~dl 96 (312)
|-||-.++-+|-.+++ |+.=||.| ++.||
T Consensus 24 ~~fe~F~~Lle~~H~l~~~~f~i~Y~D-~hgDL 55 (82)
T d1wmhb_ 24 SGFQEFSRLLRAVHQIPGLDVLLGYTD-AHGDL 55 (82)
T ss_dssp CCHHHHHHHHHHHTTCTTCCCEEEEEC-TTSCE
T ss_pred cCHHHHHHHHHHHcCCCCCcEEEEEec-CCCCc
Confidence 5699999999999998 66678888 46665
Done!