BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021459
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)
Query: 8 PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
P KP K TL H++AVS VKFS +G LAS+S DK + IW A GH G
Sbjct: 32 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 91
Query: 67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
ISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G CLKT
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
LIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 211 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 270
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D+T++
Sbjct: 271 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 330
Query: 307 VWVQD 311
+W D
Sbjct: 331 LWKSD 335
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)
Query: 8 PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
P KP K TL H++AVS VKFS +G LAS+S DK + IW A GH G
Sbjct: 30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89
Query: 67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
ISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G CLKT
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
LIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D+T++
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328
Query: 307 VWVQD 311
+W D
Sbjct: 329 LWKSD 333
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4 AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
++ P KP K TL H++AVS VKFS +G LAS+S DK + IW A G
Sbjct: 21 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 80
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
H GISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
CLKTLIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 319
Query: 303 RTVRVWVQD 311
+T+++W D
Sbjct: 320 KTIKLWKSD 328
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4 AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
++ P KP K TL H++AVS VKFS +G LAS+S DK + IW A G
Sbjct: 4 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
H GISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
CLKTLIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302
Query: 303 RTVRVWVQD 311
+T+++W D
Sbjct: 303 KTIKLWKSD 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 406 bits (1044), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4 AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
++ P KP K TL H++AVS VKFS +G LAS+S DK + IW A G
Sbjct: 10 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
H GISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
CLKTLIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 303 RTVRVWVQD 311
+T+++W D
Sbjct: 309 KTIKLWKSD 317
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 406 bits (1044), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4 AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
++ P KP K TL H++AVS VKFS +G LAS+S DK + IW A G
Sbjct: 4 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
H GISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
CLKTLIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302
Query: 303 RTVRVWVQD 311
+T+++W D
Sbjct: 303 KTIKLWKSD 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)
Query: 8 PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
P KP K TL H++AVS VKFS +G LAS+S DK + IW A GH G
Sbjct: 7 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 66
Query: 67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
ISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G CLKT
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
LIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 245
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D+T++
Sbjct: 246 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 305
Query: 307 VWVQD 311
+W D
Sbjct: 306 LWKSD 310
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4 AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
++ P KP K TL H++AVS VKFS +G LAS+S DK + IW A G
Sbjct: 10 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
H GISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
CLKTLIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 303 RTVRVWVQD 311
+T+++W D
Sbjct: 309 KTIKLWKSD 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4 AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
++ P KP K TL H++AVS VKFS +G LAS+S DK + IW A G
Sbjct: 5 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 64
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
H GISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
CLKTLIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D
Sbjct: 244 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 303
Query: 303 RTVRVWVQD 311
+T+++W D
Sbjct: 304 KTIKLWKSD 312
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4 AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
++ P KP K TL H++AVS VKFS +G LAS+S DK + IW A G
Sbjct: 9 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 68
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
H GISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
CLKTLIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D
Sbjct: 248 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 307
Query: 303 RTVRVWVQD 311
+T+++W D
Sbjct: 308 KTIKLWKSD 316
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 406 bits (1043), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4 AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
++ P KP K TL H++AVS VKFS +G LAS+S DK + IW A G
Sbjct: 10 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
H GISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
CLKTLIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 303 RTVRVWVQD 311
+T+++W D
Sbjct: 309 KTIKLWKSD 317
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)
Query: 8 PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
P KP K TL H++AVS VKFS +G LAS+S DK + IW A GH G
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 63
Query: 67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
ISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G CLKT
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
LIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 242
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D+T++
Sbjct: 243 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 302
Query: 307 VWVQD 311
+W D
Sbjct: 303 LWKSD 307
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/309 (63%), Positives = 236/309 (76%), Gaps = 2/309 (0%)
Query: 4 AQTPPYKP-YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
++ P KP Y TL H++AVS VKFS +G LAS+S DK + IW A G
Sbjct: 7 SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
H GISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGSFDES+RIW+VKTG C + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
CLKTLIDD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 303 RTVRVWVQD 311
+T+++W D
Sbjct: 306 KTIKLWKSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/309 (63%), Positives = 235/309 (76%), Gaps = 2/309 (0%)
Query: 4 AQTPPYKP-YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
++ P KP Y TL H++AVS VKFS +G LAS+S DK + IW A G
Sbjct: 7 SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
H GISD+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGSFDES+RIW+VKTG C + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
CLKTLIDD +P VSF KFSPNGK+IL TLD+ LKLW+YS GK LK YTGH N+KYCI +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 303 RTVRVWVQD 311
+T+++W D
Sbjct: 306 KTIKLWKSD 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/303 (64%), Positives = 234/303 (77%), Gaps = 2/303 (0%)
Query: 10 KPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
KP K TL H++AVS VKFS +G LA++S DK + IW A GH GIS
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
D+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLIVSGSFD
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
ES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G CLKTLI
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248
DD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI + FSVT
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D+T+++W
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 309 VQD 311
D
Sbjct: 312 KSD 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/303 (64%), Positives = 234/303 (77%), Gaps = 2/303 (0%)
Query: 10 KPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
KP K TL H++AVS VKFS +G LAS+S DK + IW A GH GIS
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
D+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLIVSGSFD
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
ES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G CLKTLI
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248
DD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI + FSVT
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D+T++++
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Query: 309 VQD 311
D
Sbjct: 312 KSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/303 (64%), Positives = 234/303 (77%), Gaps = 2/303 (0%)
Query: 10 KPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
KP K TL H++AVS VKFS +G LAS+S DK + IW A GH GIS
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
D+AWSSDS+ + SASDD+TL+IWD + CLKTL+GHS++VFC NFNPQSNLIVSGSFD
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
ES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD G CLKTLI
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248
DD +P VSF KFSPNGK+IL TLD+TLKLW+YS GK LK YTGH N+KYCI + FSVT
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS CHPTEN IASA L+ D+T++++
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Query: 309 VQD 311
D
Sbjct: 312 KSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 165/294 (56%), Gaps = 13/294 (4%)
Query: 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
+TLT HS +V V FS DG +ASAS DKTV +W+ + L+ GHS + +A+S
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSP 149
Query: 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
D I SASDD+T+++W+ L+TL GHS V+ V F+P I S S D+++++W
Sbjct: 150 DGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
+ G+ + + HS V V F+ DG I S S D T K+W+ G L+TL +
Sbjct: 208 N-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSS 264
Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254
V+ F P+G+ I + D T+KLWN + G+ L+ TGH++ + + FS +G+ I S
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV--AFS-PDGQTIAS 320
Query: 255 GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
S+D V +W+ + +Q L GH+ SV V P IASA D+TV++W
Sbjct: 321 ASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASA--SDDKTVKLW 371
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 163/294 (55%), Gaps = 13/294 (4%)
Query: 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
+TLT HS +V V FS DG +ASAS DKTV +W+ + L+ GHS + +A+S
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSP 108
Query: 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
D I SASDD+T+++W+ L+TL GHS V+ V F+P I S S D+++++W
Sbjct: 109 DGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
+ G+ + + HS V V F+ DG I S S D T K+W+ G L+TL +
Sbjct: 167 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSS 223
Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254
V FSP+G+ I + D T+KLWN + G+ L+ TGH++ + +G+ I S
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSS---SVNGVAFRPDGQTIAS 279
Query: 255 GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
S+D V +W+ + ++Q L GH+ SV V P IASA D+TV++W
Sbjct: 280 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASA--SDDKTVKLW 330
Score = 171 bits (432), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 165/294 (56%), Gaps = 13/294 (4%)
Query: 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
+TLT HS +V V FS DG +ASAS DKTV +W+ + L+ GHS ++ +A+
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRP 272
Query: 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
D I SASDD+T+++W+ L+TL GHS V+ V F+P I S S D+++++W
Sbjct: 273 DGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
+ G+ + + HS V V F+ DG I S S D T K+W+ G L+TL +
Sbjct: 331 N-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSS 387
Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254
V FSP+G+ I + D T+KLWN + G+ L+ TGH++ + + FS + + I S
Sbjct: 388 VRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV--AFSPDD-QTIAS 443
Query: 255 GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
S+D V +W+ + ++Q L GH+ SV V P IASA D+TV++W
Sbjct: 444 ASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASA--SDDKTVKLW 494
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 161/291 (55%), Gaps = 13/291 (4%)
Query: 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH 77
L AHS +V V FS DG +ASAS DKTV +W+ + L+ GHS + +A+S D
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 78 YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK 137
I SASDD+T+++W+ L+TL GHS V V F+P I S S D+++++W +
Sbjct: 71 TIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 127
Query: 138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSF 197
G+ + + HS V V F+ DG I S S D T K+W+ G L+TL
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV 186
Query: 198 AKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE 257
A FSP+G+ I + D T+KLWN + G+ L+ TGH++ + FS +G+ I S S+
Sbjct: 187 A-FSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGV--AFS-PDGQTIASASD 241
Query: 258 DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
D V +W+ + ++Q L GH+ SV V P IASA D+TV++W
Sbjct: 242 DKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASA--SDDKTVKLW 289
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 162/294 (55%), Gaps = 13/294 (4%)
Query: 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
+TLT HS +V V FS DG +ASAS DKTV +W+ + L GHS + +A+S
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSP 354
Query: 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
D I SASDD+T+++W+ L+TL GHS V V F+P I S S D+++++W
Sbjct: 355 DGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
+ G+ + + HS V V F+ D I S S D T K+W+ G L+TL +
Sbjct: 413 N-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSS 469
Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254
V FSP+G+ I + D T+KLWN + G+ L+ TGH++ + FS +G+ I S
Sbjct: 470 VRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA--FS-PDGQTIAS 525
Query: 255 GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
S+D V +W+ + ++Q L GH+ SV V P IASA D+TV++W
Sbjct: 526 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASA--SSDKTVKLW 576
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 144/253 (56%), Gaps = 10/253 (3%)
Query: 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
+H +TLT HS +V V FS DG +ASAS DKTV +W+ + L+ GHS + +A+
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAF 393
Query: 73 SSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR 132
S D I SASDD+T+++W+ L+TL GHS V+ V F+P I S S D++++
Sbjct: 394 SPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD 192
+W + G+ + + HS V V F+ DG I S S D T K+W+ G L+TL
Sbjct: 452 LWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHS 508
Query: 193 PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252
+V FSP+G+ I + D T+KLWN + G+ L+ TGH++ + + FS +G+ I
Sbjct: 509 SSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV--AFS-PDGQTI 564
Query: 253 VSGSEDNCVYVWD 265
S S D V +W+
Sbjct: 565 ASASSDKTVKLWN 577
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 138/251 (54%), Gaps = 12/251 (4%)
Query: 58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP 117
+R HS + +A+S D I SASDD+T+++W+ L+TL GHS V+ V F+P
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSP 67
Query: 118 QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
I S S D+++++W + G+ + + HS V V F+ DG I S S D T K+W+
Sbjct: 68 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK 237
G L+TL A FSP+G+ I + D T+KLWN + G+ L+ TGH++
Sbjct: 127 R-NGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSV 183
Query: 238 YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA 297
+ + FS +G+ I S S+D V +W+ + ++Q L GH+ SV V P IASA
Sbjct: 184 WGV--AFS-PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 298 GLDGDRTVRVW 308
D+TV++W
Sbjct: 240 --SDDKTVKLW 248
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 158/320 (49%), Gaps = 27/320 (8%)
Query: 8 PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGI 67
P P ++ L+ H V+ V F +++ SAS D T+ +W + GH++ +
Sbjct: 96 PRPPEKY--ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 153
Query: 68 SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF 127
D+++ + S S D T+++WD + F+C++T+ GH V V+ P + IVS S
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHGHDHNVSSVSIMPNGDHIVSASR 212
Query: 128 DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187
D++I++WEV+TG C + H V V N+DG+LI S S+D T ++W C L
Sbjct: 213 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 188 IDDKD--------PAVSFAKFSPN-----------GKFILVGTLDSTLKLWNYSAGKFLK 228
+ + P S++ S G F+L G+ D T+K+W+ S G L
Sbjct: 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 229 IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH 288
GH N + + GK+I+S ++D + VWD + K ++ L+ H V S+ H
Sbjct: 333 TLVGHDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
Query: 289 PTENKIASAGLDGDRTVRVW 308
T + + + D+TV+VW
Sbjct: 390 KTAPYVVTGSV--DQTVKVW 407
Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 132/270 (48%), Gaps = 25/270 (9%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
+TL H+ +V + F + G LLAS S D T+ +W + GH +S ++ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 76 SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
+I SAS D+T+++W+ +T + C+KT GH ++V V N LI S S D+++R+W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 136 VKTGKCTRVIRAHSMPVTSVHF--------------------NRDGSLIVSGSHDGTCKI 175
V T +C +R H V + + + G ++SGS D T K+
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN 235
WD G CL TL+ D V F GKFIL D TL++W+Y + +K H
Sbjct: 323 WDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-- 379
Query: 236 KKYCITSTFSVTNGKYIVSGSEDNCVYVWD 265
++ +TS Y+V+GS D V VW+
Sbjct: 380 -EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 145 IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG 204
+ H PVT V F+ S++VS S D T K+WD G +TL D +V F +G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSG 162
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVW 264
K + + D T+KLW++ + ++ GH + ++S + NG +IVS S D + +W
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHN---VSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309
++Q ++ GH + V V P ++ A D+TVRVWV
Sbjct: 220 EVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWV 262
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 29 KFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTL 88
K G L S S DKT+ +W S+ + VGH + + + S +I S +DD+TL
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK 137
R+WD + C+KTL H FV ++F+ + +V+GS D+++++WE +
Sbjct: 363 RVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS 76
TL H V V F + G + S + DKT+ +W + + H ++ L + +
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392
Query: 77 HYICSASDDRTLRIWDAR 94
Y+ + S D+T+++W+ R
Sbjct: 393 PYVVTGSVDQTVKVWECR 410
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 163/297 (54%), Gaps = 25/297 (8%)
Query: 16 KTLTAHS-RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
K L H ++C++F G + S S D T+ +WSA + + VGH+ G+ WSS
Sbjct: 112 KVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSS 165
Query: 75 D--SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR 132
+ I S S DRTL++W+A T +C+ TL GH+ V C++ + + +VSGS D ++R
Sbjct: 166 QMRDNIIISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLR 222
Query: 133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD 192
+W+++TG+C V+ H V V + DG +VSG++D K+WD CL TL +
Sbjct: 223 VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 280
Query: 193 PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252
S +F +G ++ G+LD+++++W+ G + TGH + +TS + + +
Sbjct: 281 RVYSL-QF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS----LTSGMELKD-NIL 332
Query: 253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC-HPTENKIASAGLDGDRTVRVW 308
VSG+ D+ V +WD++ +Q L G +VTC +N + ++ DG TV++W
Sbjct: 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG--TVKLW 387
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 113/214 (52%), Gaps = 13/214 (6%)
Query: 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS 76
TL H+ V C+ + S S D T+ +W + +H +GH + + + D
Sbjct: 194 TLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249
Query: 77 HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV 136
+ S + D +++WD T CL TL+GH++ V+ + F+ +VSGS D SIR+W+V
Sbjct: 250 RRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDV 306
Query: 137 KTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI--DDKDPA 194
+TG C + H + + + ++VSG+ D T KIWD G CL+TL + A
Sbjct: 307 ETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228
V+ +F+ N F++ + D T+KLW+ G+F++
Sbjct: 365 VTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIR 396
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 21/234 (8%)
Query: 76 SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVF-CVNFNPQSNLIVSGSFDESIRIW 134
S YI D R + ++P K L+GH D V C+ F N IVSGS D ++++W
Sbjct: 91 SAYIRQHRIDTNWRRGELKSP----KVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVW 144
Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
TGKC R + H+ V S RD ++I+SGS D T K+W+A G C+ TL
Sbjct: 145 SAVTGKCLRTLVGHTGGVWSSQM-RD-NIIISGSTDRTLKVWNAETGECIHTLYGHTS-- 200
Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254
+ + K ++ G+ D+TL++W+ G+ L + GH C+ +G+ +VS
Sbjct: 201 -TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-----DGRRVVS 254
Query: 255 GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
G+ D V VWD + +T + L GHT+ V S+ + S L D ++RVW
Sbjct: 255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSL--DTSIRVW 304
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 12/177 (6%)
Query: 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
L H AV CV++ DG + S + D V +W + +H GH+ + L +
Sbjct: 232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-- 287
Query: 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
D ++ S S D ++R+WD T +C+ TL GH + + N++VSG+ D +++IW
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIW 344
Query: 135 EVKTGKCTRVIRA---HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
++KTG+C + ++ H VT + FN++ +++ S DGT K+WD G ++ L+
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLV 399
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 156/330 (47%), Gaps = 49/330 (14%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG-------------- 66
H+ V CVKFSNDG LA+ +KT ++ S +LV R S
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 67 ----ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
I + +S D ++ + ++DR +RIWD + L+GH ++ +++ P + +
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
VSGS D ++RIW+++TG+C+ + T DG I +GS D ++WD+ G
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 183 CLKTLIDDKDP------AVSFAKFSPNGKFILVGTLDSTLKLWNY------------SAG 224
++ L + + +V F+ +G+ ++ G+LD ++KLWN ++G
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVIS 284
Y GH K + S + N +YI+SGS+D V WD + + L GH +SVIS
Sbjct: 301 TCEVTYIGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 357
Query: 285 V------TCHPTENKIASAGLDGDRTVRVW 308
V + P N A+ GD R+W
Sbjct: 358 VAVANGSSLGPEYNVFATGS--GDCKARIW 385
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 95/228 (41%), Gaps = 25/228 (10%)
Query: 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWS-SDS 76
L H + + + + G L S S D+TV IW + + +G++ +A S D
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLSIEDGVTTVAVSPGDG 219
Query: 77 HYICSASDDRTLRIWDARTPFDCLK------TLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
YI + S DR +R+WD+ T F + + GH D V+ V F +VSGS D S
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 131 IRIWEVK------------TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
+++W ++ +G C H V SV ++ I+SGS D WD
Sbjct: 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
Query: 179 GEGACLKTLIDDKDPAVSFA-----KFSPNGKFILVGTLDSTLKLWNY 221
G L L ++ +S A P G+ D ++W Y
Sbjct: 340 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 24/184 (13%)
Query: 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF-------VGHSEGISD 69
TL+ + DG +A+ SLD+ V +W + + LV R GH + +
Sbjct: 202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 261
Query: 70 LAWSSDSHYICSASDDRTLRIW---------DARTPFD--CLKTLRGHSDFVFCVNFNPQ 118
+ ++ D + S S DR++++W D++TP C T GH DFV V
Sbjct: 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 321
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL------IVSGSHDGT 172
I+SGS D + W+ K+G +++ H V SV SL +GS D
Sbjct: 322 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 381
Query: 173 CKIW 176
+IW
Sbjct: 382 ARIW 385
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIW------------SASSLALVHRFVGHSEG 66
T H +V V F+ DG + S SLD++V +W + +S ++GH +
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV------NFNPQSN 120
+ +A + + YI S S DR + WD ++ + L L+GH + V V + P+ N
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYN 371
Query: 121 LIVSGSFDESIRIWEVK 137
+ +GS D RIW+ K
Sbjct: 372 VFATGSGDCKARIWKYK 388
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 138/262 (52%), Gaps = 13/262 (4%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
+ L HS VS V SN+G SAS D ++ +W+ + ++F+GH++ + +A+S D
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 76 SHYICSASDDRTLRIWDARTPFDCLKTL-RG-HSDFVFCVNFNPQ--SNLIVSGSFDESI 131
+ I S D LR+W+ + +C+ TL RG H+D+V CV F+P + +IVSG +D +
Sbjct: 121 NRQIVSGGRDNALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK 191
++W++ TG+ ++ H+ VTSV + DGSL S DG ++WD +G L +
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA--A 236
Query: 192 DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL-KIYTGHTNKKYCITSTFSV---T 247
++ FSPN ++ + + +++++ + ++ H K + S+
Sbjct: 237 GAPINQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSA 295
Query: 248 NGKYIVSGSEDNCVYVWDLQQK 269
+G + SG DN + VW + +
Sbjct: 296 DGSTLYSGYTDNVIRVWGVSEN 317
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 132/275 (48%), Gaps = 26/275 (9%)
Query: 18 LTAHS---RAVSCVKFSNDGTLLASASLDKTVIIW--------SASSLALV-HRFVGHSE 65
LT H +++C + T + S S DKT++ W S S L R GHS
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 66 GISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSG 125
+SD+A S++ ++ SAS D +LR+W+ + C GH+ V V F+P + IVSG
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQN-GQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 126 SFDESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNR--DGSLIVSGSHDGTCKIWDAGEG 181
D ++R+W VK G+C + AH+ V+ V F+ D +IVSG D K+WD G
Sbjct: 128 GRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG 186
Query: 182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL-KIYTGHTNKKYCI 240
L T + V+ SP+G D +LW+ + G+ L ++ G + C
Sbjct: 187 R-LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICF 245
Query: 241 TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL 275
+ +Y + + + + ++DL+ K +I +L
Sbjct: 246 SPN------RYWMCAATEKGIRIFDLENKDIIVEL 274
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 18/237 (7%)
Query: 53 SLALVHRFVGHSEGISDLAWSSDSH---YICSASDDRTLRIWDA---RTPFDCL-----K 101
++A + GH ++ LA + S S D+TL W R +C +
Sbjct: 2 AVAYEGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDR 61
Query: 102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG 161
L GHS FV V + N VS S+D S+R+W ++ G+C H+ V SV F+ D
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 162 SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA-VSFAKFSP--NGKFILVGTLDSTLKL 218
IVSG D ++W+ +G C+ TL VS +FSP + I+ G D+ +K+
Sbjct: 122 RQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 219 WNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL 275
W+ + G+ + GHTN +TS +G S +D +WDL + + ++
Sbjct: 181 WDLATGRLVTDLKGHTNY---VTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 17/219 (7%)
Query: 103 LRGHSDFV---FCVNFNPQSNLIVSGSFDESIRIW---------EVKTGKCTRVIRAHSM 150
L GH +V C + +VS S D+++ W E G R + HS
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG 210
V+ V + +G+ VS S D + ++W+ G C + +S A FSP+ + I+ G
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVA-FSPDNRQIVSG 127
Query: 211 TLDSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK 269
D+ L++WN + G HT+ C+ + S+ + IVSG DN V VWDL
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSL-DAPVIVSGGWDNLVKVWDLATG 186
Query: 270 TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
++ L GHT+ V SVT P + AS+ D D R+W
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSLCASS--DKDGVARLW 223
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 136/274 (49%), Gaps = 29/274 (10%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
+ LT HS V V S+DG S S D + +W ++ RFVGH++ + +A+S D
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 76 SHYICSASDDRTLRIWDARTPFDCLKTL----RGHSDFVFCVNFNPQS--NLIVSGSFDE 129
+ I SAS DRT+++W+ T +C T+ GH D+V CV F+P + IVS S+D+
Sbjct: 484 NRQIVSASRDRTIKLWN--TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
++++W + K + H+ V++V + DGSL SG DG +WD EG L +L
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-- 599
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF---LKIYTGHTNKK--------- 237
+ + + FSPN ++ L + +K+W+ + LK+ +K
Sbjct: 600 EANSVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658
Query: 238 -----YCITSTFSVTNGKYIVSGSEDNCVYVWDL 266
YC + +S +G + SG D + VW +
Sbjct: 659 KRKVIYCTSLNWS-ADGSTLFSGYTDGVIRVWGI 691
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 126/272 (46%), Gaps = 22/272 (8%)
Query: 17 TLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVH-----RFVGHSEGISDL 70
T+ AH+ V+ + D ++ SAS DK++I+W + + R GHS + D+
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
SSD + S S D LR+WD + GH+ V V F+ + IVS S D +
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVST-RRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 131 IRIWEVKTGKCTRVI----RAHSMPVTSVHF--NRDGSLIVSGSHDGTCKIWDAGEGAC- 183
I++W G+C I H V+ V F N IVS S D T K+W+ C
Sbjct: 496 IKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN--CK 552
Query: 184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST 243
L++ + VS SP+G G D + LW+ + GK K+Y+ N +
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLEAN---SVIHA 607
Query: 244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL 275
+ +Y + + ++ + +WDL+ K++++ L
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDL 639
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 100/216 (46%), Gaps = 13/216 (6%)
Query: 102 TLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIWEVKT-----GKCTRVIRAHSMPVTS 154
T+R H+D V + P N +IVS S D+SI +W++ G R + HS V
Sbjct: 377 TMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 155 VHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS 214
V + DG +SGS DG ++WD G + + +S A FS + + I+ + D
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVA-FSLDNRQIVSASRDR 494
Query: 215 TLKLWN-YSAGKFLKIYTGHTNKKYCITSTFSV-TNGKYIVSGSEDNCVYVWDLQQKTMI 272
T+KLWN K+ G ++ + FS T IVS S D V VW+L +
Sbjct: 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554
Query: 273 QKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
L GHT V +V P + AS G DG V +W
Sbjct: 555 STLAGHTGYVSTVAVSPDGSLCASGGKDG--VVLLW 588
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 26/182 (14%)
Query: 20 AHSRAVSCVKFSNDGTL---LASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS 76
H VSCV+FS + TL + SAS DKTV +W+ S+ L GH+ +S +A S D
Sbjct: 515 GHRDWVSCVRFSPN-TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 77 HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV 136
S D + +WD L +L +S + + F+P + + + + I+IW++
Sbjct: 574 SLCASGGKDGVVLLWDL-AEGKKLYSLEANS-VIHALCFSPNRYWLCAAT-EHGIKIWDL 630
Query: 137 KTGKCTRVIRA----------HSMPV---------TSVHFNRDGSLIVSGSHDGTCKIWD 177
++ ++ +S P TS++++ DGS + SG DG ++W
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690
Query: 178 AG 179
G
Sbjct: 691 IG 692
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 134/262 (51%), Gaps = 17/262 (6%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
+ L HS VS V S+DG S S D T+ +W ++ RFVGH++ + +A+SSD
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 76 SHYICSASDDRTLRIWDARTPFDCLKTLR--GHSDFVFCVNFNPQSN--LIVSGSFDESI 131
+ I S S D+T+++W+ T C T++ HS++V CV F+P S+ +IVS +D+ +
Sbjct: 140 NRQIVSGSRDKTIKLWN--TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK 191
++W + K H+ + +V + DGSL SG DG +WD EG L TL D
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DG 255
Query: 192 DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL-------KIYTGHTNKKYCITSTF 244
++ FSPN ++ L ++K+W+ GK + I T + TS
Sbjct: 256 GDIINALCFSPN-RYWLCAATGPSIKIWDLE-GKIIVDELKQEVISTSSKAEPPQCTSLA 313
Query: 245 SVTNGKYIVSGSEDNCVYVWDL 266
+G+ + +G DN V VW +
Sbjct: 314 WSADGQTLFAGYTDNLVRVWQV 335
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 117/242 (48%), Gaps = 14/242 (5%)
Query: 54 LALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIW----DARTPFDCLKTLRGHSD 108
+ L GH+ ++ +A + I SAS D+T+ +W D + LRGHS
Sbjct: 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87
Query: 109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS 168
FV V + +SGS+D ++R+W++ TG TR H+ V SV F+ D IVSGS
Sbjct: 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147
Query: 169 HDGTCKIWDAGEGACLKTLIDDKDPA-VSFAKFSPN--GKFILVGTLDSTLKLWNYSAGK 225
D T K+W+ G C T+ D+ VS +FSPN I+ D +K+WN + K
Sbjct: 148 RDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206
Query: 226 FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISV 285
+ GHT Y T T S +G SG +D +WDL + + LDG +I+
Sbjct: 207 LKTNHIGHTG--YLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINA 261
Query: 286 TC 287
C
Sbjct: 262 LC 263
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 26/290 (8%)
Query: 36 LLASASLDKTVIIWS----ASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRI 90
++ SAS DKT+I+W ++ + R + GHS +SD+ SSD + S S D TLR+
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AH 148
WD T + GH+ V V F+ + IVSGS D++I++W G C ++ +H
Sbjct: 113 WDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESH 170
Query: 149 SMPVTSVHF--NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF 206
S V+ V F N +IVS D K+W+ LKT ++ SP+G
Sbjct: 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 207 ILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266
G D LW+ + GK L G I + + +Y + + + +WDL
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINALCFSPNRYWLCAATGPSIKIWDL 284
Query: 267 QQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG--------DRTVRVW 308
+ K ++ +L S S P +A + DG D VRVW
Sbjct: 285 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVW 333
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 9/207 (4%)
Query: 102 TLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIW-----EVKTGKCTRVIRAHSMPVTSV 155
TL+GH+ +V + PQ ++I+S S D++I +W E G R +R HS V+ V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST 215
+ DG +SGS DGT ++WD G + + +S A FS + + I+ G+ D T
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA-FSSDNRQIVSGSRDKT 151
Query: 216 LKLWN-YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK 274
+KLWN K+ H+ C+ + + +N IVS D V VW+L +
Sbjct: 152 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN-PIIVSCGWDKLVKVWNLANCKLKTN 210
Query: 275 LDGHTDSVISVTCHPTENKIASAGLDG 301
GHT + +VT P + AS G DG
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASGGKDG 237
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 20 AHSRAVSCVKFSNDGT--LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH 77
+HS VSCV+FS + + ++ S DK V +W+ ++ L +GH+ ++ + S D
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228
Query: 78 YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW--- 134
S D +WD L TL G D + + F+P + + + SI+IW
Sbjct: 229 LCASGGKDGQAMLWDLNEG-KHLYTLDG-GDIINALCFSPNRYWLCAAT-GPSIKIWDLE 285
Query: 135 ------EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181
E+K + +A TS+ ++ DG + +G D ++W G
Sbjct: 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 134/262 (51%), Gaps = 17/262 (6%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
+ L HS VS V S+DG S S D T+ +W ++ RFVGH++ + +A+SSD
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 76 SHYICSASDDRTLRIWDARTPFDCLKTLR--GHSDFVFCVNFNPQSN--LIVSGSFDESI 131
+ I S S D+T+++W+ T C T++ HS++V CV F+P S+ +IVS +D+ +
Sbjct: 117 NRQIVSGSRDKTIKLWN--TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK 191
++W + K H+ + +V + DGSL SG DG +WD EG L TL D
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DG 232
Query: 192 DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL-------KIYTGHTNKKYCITSTF 244
++ FSPN ++ L ++K+W+ GK + I T + TS
Sbjct: 233 GDIINALCFSPN-RYWLCAATGPSIKIWDLE-GKIIVDELKQEVISTSSKAEPPQCTSLA 290
Query: 245 SVTNGKYIVSGSEDNCVYVWDL 266
+G+ + +G DN V VW +
Sbjct: 291 WSADGQTLFAGYTDNLVRVWQV 312
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 117/242 (48%), Gaps = 14/242 (5%)
Query: 54 LALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIW----DARTPFDCLKTLRGHSD 108
+ L GH+ ++ +A + I SAS D+T+ +W D + LRGHS
Sbjct: 5 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 64
Query: 109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS 168
FV V + +SGS+D ++R+W++ TG TR H+ V SV F+ D IVSGS
Sbjct: 65 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 124
Query: 169 HDGTCKIWDAGEGACLKTLIDDKDPA-VSFAKFSPN--GKFILVGTLDSTLKLWNYSAGK 225
D T K+W+ G C T+ D+ VS +FSPN I+ D +K+WN + K
Sbjct: 125 RDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 183
Query: 226 FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISV 285
+ GHT Y T T S +G SG +D +WDL + + LDG +I+
Sbjct: 184 LKTNHIGHTG--YLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINA 238
Query: 286 TC 287
C
Sbjct: 239 LC 240
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 26/290 (8%)
Query: 36 LLASASLDKTVIIWS----ASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRI 90
++ SAS DKT+I+W ++ + R + GHS +SD+ SSD + S S D TLR+
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AH 148
WD T + GH+ V V F+ + IVSGS D++I++W G C ++ +H
Sbjct: 90 WDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESH 147
Query: 149 SMPVTSVHF--NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF 206
S V+ V F N +IVS D K+W+ LKT ++ SP+G
Sbjct: 148 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 207 ILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266
G D LW+ + GK L G I + + +Y + + + +WDL
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINALCFSPNRYWLCAATGPSIKIWDL 261
Query: 267 QQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG--------DRTVRVW 308
+ K ++ +L S S P +A + DG D VRVW
Sbjct: 262 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVW 310
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 9/207 (4%)
Query: 102 TLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIW-----EVKTGKCTRVIRAHSMPVTSV 155
TL+GH+ +V + PQ ++I+S S D++I +W E G R +R HS V+ V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST 215
+ DG +SGS DGT ++WD G + + +S A FS + + I+ G+ D T
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA-FSSDNRQIVSGSRDKT 128
Query: 216 LKLWN-YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK 274
+KLWN K+ H+ C+ + + +N IVS D V VW+L +
Sbjct: 129 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN-PIIVSCGWDKLVKVWNLANCKLKTN 187
Query: 275 LDGHTDSVISVTCHPTENKIASAGLDG 301
GHT + +VT P + AS G DG
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDG 214
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 20 AHSRAVSCVKFSNDGT--LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH 77
+HS VSCV+FS + + ++ S DK V +W+ ++ L +GH+ ++ + S D
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 205
Query: 78 YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW--- 134
S D +WD L TL G D + + F+P + + + SI+IW
Sbjct: 206 LCASGGKDGQAMLWDLNEG-KHLYTLDG-GDIINALCFSPNRYWLCAAT-GPSIKIWDLE 262
Query: 135 ------EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181
E+K + +A TS+ ++ DG + +G D ++W G
Sbjct: 263 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 147/303 (48%), Gaps = 22/303 (7%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
H+ AV FS DG +AS DKT+ ++ A + + H + + A+SSD YI
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 81 SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIWEVKT 138
+ S D+ ++IWD+ T + T HS+ V C +F +SN L+ +GS D +++W++
Sbjct: 681 TCSADKKVKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 739
Query: 139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL------IDDKD 192
+C + H+ V F+ D L+ S S DGT ++WD K++ + +D
Sbjct: 740 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 799
Query: 193 PA------VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFS 245
P V +S +G I+V + L +++G +I+TG H+ +YC FS
Sbjct: 800 PPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC---DFS 856
Query: 246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTV 305
+ +++ S+ CV +W++ + + GH V V P + +A D+T+
Sbjct: 857 PYDHLAVIALSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS--DDQTI 913
Query: 306 RVW 308
RVW
Sbjct: 914 RVW 916
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
V+R H+ V F++DG I S D T +++ A G L + +D + A FS +
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA-FSSD 675
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYV 263
+I + D +K+W+ + GK + Y H+ + C T + +N + +GS D + +
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKL 734
Query: 264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
WDL QK + GHT+SV P + +AS DG T+R+W
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG--TLRLW 777
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 135/341 (39%), Gaps = 57/341 (16%)
Query: 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL-----VHRFVGHSEGISD-- 69
T+ H+ +V+ +FS D LLAS S D T+ +W S V RF SE +
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 70 ------LAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV 123
+WS+D I A+ ++ L ++D T + GH + +F+P +L V
Sbjct: 805 EVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 863
Query: 124 SGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE--- 180
+ +W + + R H V V F+ DGS ++ S D T ++W+ +
Sbjct: 864 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 923
Query: 181 --GACLKTLID-----------------------------DKDPA--VSFAKFSPNGKFI 207
LK ID D P VS SP+ +++
Sbjct: 924 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 983
Query: 208 LVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267
G D +K+ + GH I T +GK ++S SED+ + VW+ Q
Sbjct: 984 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT---ADGKTLISSSEDSVIQVWNWQ 1040
Query: 268 QKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+ L H ++V ++++ S DG TV+VW
Sbjct: 1041 TGDYV-FLQAHQETVKDFRL-LQDSRLLSWSFDG--TVKVW 1077
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 4/203 (1%)
Query: 25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD 84
VSC S +A D + I + + VGH + + + +++D + S+S+
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1030
Query: 85 DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV 144
D +++W+ +T L+ H + V S L+ S SFD ++++W V TG+ R
Sbjct: 1031 DSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERD 1087
Query: 145 IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG 204
H V S + D + S S D T KIW + L L + V + FS +G
Sbjct: 1088 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-KGHNGCVRCSAFSLDG 1146
Query: 205 KFILVGTLDSTLKLWNYSAGKFL 227
+ G + +++WN S G+ L
Sbjct: 1147 ILLATGDDNGEIRIWNVSDGQLL 1169
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 24/239 (10%)
Query: 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
R F + H +AV ++F+ DG L S+S D + +W+ + V H E + D
Sbjct: 1001 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRL 1059
Query: 73 SSDSHYICSASDDRTLRIWDART-----PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF 127
DS + S S D T+++W+ T F C H V + + S S
Sbjct: 1060 LQDSRLL-SWSFDGTVKVWNVITGRIERDFTC------HQGTVLSCAISSDATKFSSTSA 1112
Query: 128 DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG----AC 183
D++ +IW ++ H+ V F+ DG L+ +G +G +IW+ +G +C
Sbjct: 1113 DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 184 LKTLIDDKDPA----VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK-IYTGHTNKK 237
+++ V+ FSP+ K ++ + LK WN + G + YT TN K
Sbjct: 1173 APISVEEGTATHGGWVTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQTFYTNGTNLK 1229
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG 161
+R H+D V+ F+ I S D+++++++ +TG+ I+AH V F+ D
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 162 SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV--GTLDSTLKLW 219
S I + S D KIWD+ G + T D+ V+ F+ +L+ G+ D LKLW
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 220 NYSAGKFLKIYTGHTNK-KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267
+ + + GHTN +C S + + + S S D + +WD++
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFS----PDDELLASCSADGTLRLWDVR 780
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 12/174 (6%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
+ T H V S+D T +S S DKT IWS L+ +H GH+ + A+S D
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 76 SHYICSASDDRTLRIWDAR--------TPFDCLKTLRGHSDFVFCVNFNPQSNLIVS-GS 126
+ + D+ +RIW+ P + H +V V F+P S +VS G
Sbjct: 1146 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1205
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180
+ ++ W V TG ++ + + +H + D V+ + G I E
Sbjct: 1206 Y---LKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE 1256
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 147/303 (48%), Gaps = 22/303 (7%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
H+ AV FS DG +AS DKT+ ++ A + + H + + A+SSD YI
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 81 SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIWEVKT 138
+ S D+ ++IWD+ T + T HS+ V C +F +SN L+ +GS D +++W++
Sbjct: 674 TCSADKKVKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732
Query: 139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL------IDDKD 192
+C + H+ V F+ D L+ S S DGT ++WD K++ + +D
Sbjct: 733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 792
Query: 193 PA------VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFS 245
P V +S +G I+V + L +++G +I+TG H+ +YC FS
Sbjct: 793 PPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC---DFS 849
Query: 246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTV 305
+ +++ S+ CV +W++ + + GH V V P + +A D+T+
Sbjct: 850 PYDHLAVIALSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS--DDQTI 906
Query: 306 RVW 308
RVW
Sbjct: 907 RVW 909
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
V+R H+ V F++DG I S D T +++ A G L + +D + A FS +
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA-FSSD 668
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYV 263
+I + D +K+W+ + GK + Y H+ + C T + +N + +GS D + +
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKL 727
Query: 264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
WDL QK + GHT+SV P + +AS DG T+R+W
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG--TLRLW 770
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 135/341 (39%), Gaps = 57/341 (16%)
Query: 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL-----VHRFVGHSEG----- 66
T+ H+ +V+ +FS D LLAS S D T+ +W S V RF SE
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 67 ---ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV 123
+ +WS+D I A+ ++ L ++D T + GH + +F+P +L V
Sbjct: 798 EVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 856
Query: 124 SGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE--- 180
+ +W + + R H V V F+ DGS ++ S D T ++W+ +
Sbjct: 857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916
Query: 181 --GACLKTLID-----------------------------DKDPA--VSFAKFSPNGKFI 207
LK ID D P VS SP+ +++
Sbjct: 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976
Query: 208 LVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267
G D +K+ + GH I T +GK ++S SED+ + VW+ Q
Sbjct: 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT---ADGKTLISSSEDSVIQVWNWQ 1033
Query: 268 QKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+ L H ++V ++++ S DG TV+VW
Sbjct: 1034 TGDYV-FLQAHQETVKDFRL-LQDSRLLSWSFDG--TVKVW 1070
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 4/203 (1%)
Query: 25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD 84
VSC S +A D + I + + VGH + + + +++D + S+S+
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023
Query: 85 DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV 144
D +++W+ +T L+ H + V S L+ S SFD ++++W V TG+ R
Sbjct: 1024 DSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERD 1080
Query: 145 IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG 204
H V S + D + S S D T KIW + L L + V + FS +G
Sbjct: 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-KGHNGCVRCSAFSLDG 1139
Query: 205 KFILVGTLDSTLKLWNYSAGKFL 227
+ G + +++WN S G+ L
Sbjct: 1140 ILLATGDDNGEIRIWNVSDGQLL 1162
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 24/239 (10%)
Query: 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
R F + H +AV ++F+ DG L S+S D + +W+ + V H E + D
Sbjct: 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRL 1052
Query: 73 SSDSHYICSASDDRTLRIWDART-----PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF 127
DS + S S D T+++W+ T F C H V + + S S
Sbjct: 1053 LQDSRLL-SWSFDGTVKVWNVITGRIERDFTC------HQGTVLSCAISSDATKFSSTSA 1105
Query: 128 DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG----AC 183
D++ +IW ++ H+ V F+ DG L+ +G +G +IW+ +G +C
Sbjct: 1106 DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 184 LKTLIDDKDPA----VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK-IYTGHTNKK 237
+++ V+ FSP+ K ++ + LK WN + G + YT TN K
Sbjct: 1166 APISVEEGTATHGGWVTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQTFYTNGTNLK 1222
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG 161
+R H+D V+ F+ I S D+++++++ +TG+ I+AH V F+ D
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 162 SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV--GTLDSTLKLW 219
S I + S D KIWD+ G + T D+ V+ F+ +L+ G+ D LKLW
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 220 NYSAGKFLKIYTGHTNK-KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267
+ + + GHTN +C S + + + S S D + +WD++
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFS----PDDELLASCSADGTLRLWDVR 773
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 12/174 (6%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
+ T H V S+D T +S S DKT IWS L+ +H GH+ + A+S D
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 76 SHYICSASDDRTLRIWDAR--------TPFDCLKTLRGHSDFVFCVNFNPQSNLIVS-GS 126
+ + D+ +RIW+ P + H +V V F+P S +VS G
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1198
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180
+ ++ W V TG ++ + + +H + D V+ + G I E
Sbjct: 1199 Y---LKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE 1249
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 131/259 (50%), Gaps = 22/259 (8%)
Query: 53 SLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFC 112
SL +H S+G+ L + D I S D T++IWD T +C + L GH+ V C
Sbjct: 122 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLC 178
Query: 113 VNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT 172
+ ++ + +I++GS D ++R+W+V TG+ + H V + FN ++V+ S D +
Sbjct: 179 LQYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRS 234
Query: 173 CKIWDAGEGA--CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY 230
+WD L+ ++ AV+ F + K+I+ + D T+K+WN S +F++
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL 292
Query: 231 TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPT 290
GH C+ + +VSGS DN + +WD++ ++ L+GH + V C
Sbjct: 293 NGHKRGIACLQ-----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRCIRF 344
Query: 291 ENK-IASAGLDGDRTVRVW 308
+NK I S DG ++VW
Sbjct: 345 DNKRIVSGAYDG--KIKVW 361
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 28/221 (12%)
Query: 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS---LALVHRFVGHSEGISDLA 71
TL H AV ++F+N ++ + S D+++ +W +S + L VGH ++ +
Sbjct: 206 LNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263
Query: 72 WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI 131
+ D YI SAS DRT+++W+ T + ++TL GH + C+ + + L+VSGS D +I
Sbjct: 264 F--DDKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI 318
Query: 132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD--------AGEGA- 182
R+W+++ G C RV+ H V + F D IVSG++DG K+WD A G
Sbjct: 319 RLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 376
Query: 183 CLKTLIDDKDPA--VSFAKFSPNGKFILVGTLDSTLKLWNY 221
CL+TL++ + F +F I+ + D T+ +W++
Sbjct: 377 CLRTLVEHSGRVFRLQFDEFQ-----IVSSSHDDTILIWDF 412
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 129/257 (50%), Gaps = 17/257 (6%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
+ LT H+ +V C+++ D ++ + S D TV +W ++ +++ + H E + L +++
Sbjct: 167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 224
Query: 76 SHYICSASDDRTLRIWDARTPFDCL--KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRI 133
CS DR++ +WD +P D + L GH V V+F+ + IVS S D +I++
Sbjct: 225 MMVTCSK--DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKV 280
Query: 134 WEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP 193
W T + R + H + + + RD L+VSGS D T ++WD GACL+ L + +
Sbjct: 281 WNTSTCEFVRTLNGHKRGIACLQY-RD-RLVVSGSSDNTIRLWDIECGACLRVL-EGHEE 337
Query: 194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY-- 251
V +F + K I+ G D +K+W+ A + G + + + V ++
Sbjct: 338 LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE 395
Query: 252 --IVSGSEDNCVYVWDL 266
IVS S D+ + +WD
Sbjct: 396 FQIVSSSHDDTILIWDF 412
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 20/248 (8%)
Query: 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICS 81
S+ V C+++ D + S D T+ IW ++L GH+ + L D I +
Sbjct: 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIIT 188
Query: 82 ASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK- 140
S D T+R+WD T + L TL H + V + FN + ++V+ S D SI +W++ +
Sbjct: 189 GSSDSTVRVWDVNTG-EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD 245
Query: 141 --CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFA 198
RV+ H V V F D IVS S D T K+W+ ++TL K A
Sbjct: 246 ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR---GIA 300
Query: 199 KFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED 258
+ ++ G+ D+T++LW+ G L++ GH CI + K IVSG+ D
Sbjct: 301 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-----FDNKRIVSGAYD 355
Query: 259 NCVYVWDL 266
+ VWDL
Sbjct: 356 GKIKVWDL 363
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 148/303 (48%), Gaps = 22/303 (7%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
H+ AV FS DG +AS DKT+ ++ A + + H + + A+S+D +I
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 81 SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIWEVKT 138
+ S D+ ++IW++ T + + T HS+ V C +F S+ L+ +GS D +++W++
Sbjct: 680 TCSVDKKVKIWNSMTG-ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ 738
Query: 139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL------IDDKD 192
+C + H+ V F+ D L+ S S DGT K+WDA K++ ++ +D
Sbjct: 739 KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLED 798
Query: 193 PA------VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFS 245
P V +S +G I+V + +++G +I+TG H+ +YC FS
Sbjct: 799 PQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYC---DFS 855
Query: 246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTV 305
N +V+ S+ CV +W+ ++ + GH V V P + ++ D+T+
Sbjct: 856 PQNHLAVVALSQ-YCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSS--DDQTI 912
Query: 306 RVW 308
R+W
Sbjct: 913 RLW 915
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
V+R H+ V F+ DG I S D T +++ A G L + +D + A FS +
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCA-FSTD 674
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYV 263
+FI ++D +K+WN G+ + Y H+ + C T S ++ + +GS D + +
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNS-SHHLLLATGSSDCFLKL 733
Query: 264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
WDL QK + GHT+SV P + +AS DG T+++W
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADG--TLKLW 776
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 127/314 (40%), Gaps = 33/314 (10%)
Query: 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS------SLALVHRFVGHSEGISDL 70
T+ H+ +V+ +FS D LLAS S D T+ +W A+ S+ + F+ + D+
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM 803
Query: 71 -------AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV 123
+WS+D I A+ ++ ++D T + GH + +F+PQ++L V
Sbjct: 804 EVIVKCCSWSADGARIMVAAKNKIF-LFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAV 862
Query: 124 SGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC 183
+ +W + R H V V F+ DGS ++ S D T ++W+ + C
Sbjct: 863 VALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET-KKVC 921
Query: 184 LKTLIDDKDPAVSFAK-----FSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
K+ AV + F N +L L+L N G+ Y
Sbjct: 922 -------KNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQI--DYLTEAQVSC 972
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298
C S + +YI G E+ + + +L + Q H +V + E + S+
Sbjct: 973 CCLS----PHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSS 1028
Query: 299 LDGDRTVRVWVQDR 312
D + V W D+
Sbjct: 1029 DDAEIQVWNWQLDK 1042
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 8/167 (4%)
Query: 102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG 161
+R H+D V+ F+ I S D+++++++ +TG+ I+AH V F+ D
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 162 SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV--GTLDSTLKLW 219
I + S D KIW++ G + T D+ V+ F+ + +L+ G+ D LKLW
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHT-YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 220 NYSAGKFLKIYTGHTNK-KYCITSTFSVTNGKYIVSGSEDNCVYVWD 265
+ + + GHTN +C S + K + S S D + +WD
Sbjct: 735 DLNQKECRNTMFGHTNSVNHCRFS----PDDKLLASCSADGTLKLWD 777
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 4/205 (1%)
Query: 25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD 84
VSC S +A + + I + + H + + + +++D + S+SD
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 85 DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV 144
D +++W+ + D LRGH + V S L+ S SFD ++++W + TG +
Sbjct: 1030 DAEIQVWNWQ--LDKCIFLRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKD 1086
Query: 145 IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG 204
H V S + D + S S D T KIW L L + V + FS +
Sbjct: 1087 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHEL-RGHNGCVRCSAFSVDS 1145
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKI 229
+ G + +++WN S G+ L +
Sbjct: 1146 TLLATGDDNGEIRIWNVSNGELLHL 1170
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 16/180 (8%)
Query: 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH 77
L H V + + LL S S D TV +W+ + FV H + S D+
Sbjct: 1046 LRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 78 YICSASDDRTLRIW--DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
S S D+T +IW D P L LRGH+ V C F+ S L+ +G + IRIW
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLP---LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Query: 136 VKTGKCTRV--------IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187
V G+ + H VT + F+ DG +++S G K W+ G +T
Sbjct: 1162 VSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTF 1219
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/326 (19%), Positives = 117/326 (35%), Gaps = 44/326 (13%)
Query: 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHY 78
T H + FS L A V +W+ S + V GH + + +S D
Sbjct: 843 TGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 79 ICSASDDRTLRIWDART-------------------------PFDCLKTLR------GHS 107
++SDD+T+R+W+ + D ++ L+ G
Sbjct: 903 FLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQI 962
Query: 108 DF-----VFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS 162
D+ V C +P I G + +I I E+ + + H V + F D
Sbjct: 963 DYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEK 1022
Query: 163 LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS 222
++S S D ++W+ C+ + V + N + +L + D T+K+WN
Sbjct: 1023 TLISSSDDAEIQVWNWQLDKCI--FLRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNII 1079
Query: 223 AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSV 282
G K + H + T S S D +W + +L GH +
Sbjct: 1080 TGNKEKDFVCHQGTVLSCDISHDATK---FSSTSADKTAKIWSFDLLLPLHELRGH-NGC 1135
Query: 283 ISVTCHPTENKIASAGLDGDRTVRVW 308
+ + ++ + + G D + +R+W
Sbjct: 1136 VRCSAFSVDSTLLATG-DDNGEIRIW 1160
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 13/174 (7%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
K H V S+D T +S S DKT IWS L +H GH+ + A+S D
Sbjct: 1085 KDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVD 1144
Query: 76 SHYICSASDDRTLRIWDART--------PFDCLKTLRGHSDFVFCVNFNPQSNLIVS-GS 126
S + + D+ +RIW+ P + H +V + F+P +++S G
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLHLCAPLS-EEGAATHGGWVTDLCFSPDGKMLISAGG 1203
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180
+ I+ W V TG+ ++ + + +H + D V+ + G I E
Sbjct: 1204 Y---IKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE 1254
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
R +TL H + + + D LL SAS D +IIW + + VH S + A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 73 SSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDE 129
+ +Y+ D I++ +T ++ R GH+ ++ C F N IV+ S D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
+ +W+++TG+ T H+ V S+ D L VSG+ D + K+WD EG C +T
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT- 223
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
+ ++ F PNG G+ D+T +L++ A + L Y+ H N ITS +G
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSG 282
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+ +++G +D VWD + L GH + V + T++ +A A D +++W
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 339
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
H+ V + + D L S + D + +W F GH I+ + + + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 81 SASDDRTLRIWDARTPFDCLKTLRGHS-DFVFC----VNFNPQSNLIVSGSFDESIRIWE 135
+ SDD T R++D R + L +S D + C V+F+ L+++G D + +W+
Sbjct: 243 TGSDDATCRLFDLRAD----QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
V+ H V+ + DG + +GS D KIW+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
R +TL H + + + D LL SAS D +IIW + + VH S + A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 73 SSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDE 129
+ +Y+ D I++ +T ++ R GH+ ++ C F N IV+ S D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
+ +W+++TG+ T H+ V S+ D L VSG+ D + K+WD EG C +T
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT- 223
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
+ ++ F PNG G+ D+T +L++ A + L Y+ H N ITS +G
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSG 282
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+ +++G +D VWD + L GH + V + T++ +A A D +++W
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 339
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
H+ V + + D L S + D + +W F GH I+ + + + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 81 SASDDRTLRIWDARTPFDCLKTLRGHS-DFVFC----VNFNPQSNLIVSGSFDESIRIWE 135
+ SDD T R++D R + L +S D + C V+F+ L+++G D + +W+
Sbjct: 243 TGSDDATCRLFDLRAD----QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
V+ H V+ + DG + +GS D KIW+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
R +TL H + + + D LL SAS D +IIW + + VH S + A+
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 73 SSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDE 129
+ +Y+ D I++ +T ++ R GH+ ++ C F N IV+ S D
Sbjct: 117 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 175
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
+ +W+++TG+ T H+ V S+ D L VSG+ D + K+WD EG C +T
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT- 234
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
+ ++ F PNG G+ D+T +L++ A + L Y+ H N ITS +G
Sbjct: 235 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSG 293
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+ +++G +D VWD + L GH + V + T++ +A A D +++W
Sbjct: 294 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 350
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
H+ V + + D L S + D + +W F GH I+ + + + +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 81 SASDDRTLRIWDARTPFDCLKTLRGHS-DFVFC----VNFNPQSNLIVSGSFDESIRIWE 135
+ SDD T R++D R + L +S D + C V+F+ L+++G D + +W+
Sbjct: 254 TGSDDATCRLFDLRAD----QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
Query: 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
V+ H V+ + DG + +GS D KIW+
Sbjct: 310 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
R +TL H + + + D LL SAS D +IIW + + VH S + A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 73 SSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDE 129
+ +Y+ D I++ +T ++ R GH+ ++ C F N IV+ S D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
+ +W+++TG+ T H+ V S+ D L VSG+ D + K+WD EG C +T
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT- 223
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
+ ++ F PNG G+ D+T +L++ A + L Y+ H N ITS +G
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSG 282
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+ +++G +D VWD + L GH + V + T++ +A A D +++W
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 339
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
H+ V + + D L S + D + +W F GH I+ + + + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 81 SASDDRTLRIWDARTPFDCLKTLRGHS-DFVFC----VNFNPQSNLIVSGSFDESIRIWE 135
+ SDD T R++D R + L +S D + C V+F+ L+++G D + +W+
Sbjct: 243 TGSDDATCRLFDLRAD----QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
V+ H V+ + DG + +GS D KIW+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
R +TL H + + + D LL SAS D +IIW + + VH S + A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 73 SSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDE 129
+ +Y+ D I++ +T ++ R GH+ ++ C F N IV+ S D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
+ +W+++TG+ T H+ V S+ D L VSG+ D + K+WD EG C +T
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT- 223
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
+ ++ F PNG G+ D+T +L++ A + L Y+ H N ITS +G
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSG 282
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+ +++G +D VWD + L GH + V + T++ +A A D +++W
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 339
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
H+ V + + D L S + D + +W F GH I+ + + + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 81 SASDDRTLRIWDARTPFDCLKTLRGHS-DFVFC----VNFNPQSNLIVSGSFDESIRIWE 135
+ SDD T R++D R + L +S D + C V+F+ L+++G D + +W+
Sbjct: 243 TGSDDATCRLFDLRAD----QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
V+ H V+ + DG + +GS D KIW+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 26/275 (9%)
Query: 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA-------LVHRFVGHSEGISDLA 71
TAH +A+ V + +LLA+ S D TV IW+ A L+ GH + +A
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 72 WSSDSHYICSASDDRTLRIWD---ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
WS+D +Y+ + S D+++ IW+ + ++C+ L+ HS V V ++P L+ S S+D
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 129 ESIRIWE--VKTGKCTRVIRAHSMPVTSVHFNRDGSL--IVSGSHDGTCKIW-------- 176
+++RIW+ +C V+ H V S F++ + + SGS D T ++W
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED 234
Query: 177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK---FLKIYTGH 233
D E C L D V + NG VG D L ++ G+ F K H
Sbjct: 235 DQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGA-DGVLAVYEEVDGEWKVFAKRALCH 293
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ 268
+ + + + +G +D V W L++
Sbjct: 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIW----SASSLALVHRFVGHSEGISDLAWS 73
+ H V V +SNDG LA+ S DK+V IW S + HS+ + + W
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 74 SDSHYICSASDDRTLRIW-DARTPFDCLKTLRGHSDFVFCVNFNPQSNL--IVSGSFDES 130
+ S+S D T+RIW D ++C+ L GH V+ +F+ + + SGS D +
Sbjct: 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222
Query: 131 IRIWEV--------KTGKCTRVI-RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181
+R+W+ + C ++ H V +V + +G LI S DG +++ +G
Sbjct: 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 15/225 (6%)
Query: 97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV----IRAHSMPV 152
+ +K+L+ + + ++ +F+ ++ +GS D I++ VK T + AH +
Sbjct: 4 INLIKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAI 61
Query: 153 TSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC------LKTLIDDKDPAVSFAKFSPNGKF 206
SV + SL+ +GS D T IW E A L +I+ + V +S +G +
Sbjct: 62 RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY 121
Query: 207 ILVGTLDSTLKLWNY-SAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD 265
+ + D ++ +W +G+ + + + + + S S D+ V +W
Sbjct: 122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181
Query: 266 LQQKTM--IQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+ L+GH +V S TE D TVRVW
Sbjct: 182 DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 10 KPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS--ASSLALVHRFVGHSEGI 67
+ Y L HS+ V V + LLAS+S D TV IW V GH EG
Sbjct: 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGT 199
Query: 68 SDLAWSSD------SHYICSASDDRTLRIW 91
WSSD +CS SDD T+R+W
Sbjct: 200 ---VWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 9 YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
Y+ +++ V KF + S D + +++ ++ V F H + I
Sbjct: 42 YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101
Query: 69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSF 127
+A Y+ S SDD T+++W+ + +T GH FV CV FNP+ + SG
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 128 DESIRIWE---------VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
D ++++W + TG+ V P+ D +++ S D T KIWD
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP------DKPYMITASDDLTIKIWDY 215
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
+C+ TL + VSFA F P I+ G+ D TLK+WN S K K + +
Sbjct: 216 QTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274
Query: 239 CITSTFSVTNGKYIVSGSED 258
CI +T YI SG ++
Sbjct: 275 CI-ATHPTGRKNYIASGFDN 293
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
Query: 88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA 147
+ +W+ T + +++++ V F + N I+ GS D IR++ TG+ A
Sbjct: 37 VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 148 HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFI 207
H + S+ + ++SGS D T K+W+ L+ + + V F+P
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 208 LV-GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST--FSVTNGKYIVSGSEDNCVYVW 264
G LD T+K+W S G+ +T T ++ + + + + Y+++ S+D + +W
Sbjct: 156 FASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
D Q K+ + L+GH +V HPT I S DG T+++W
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG--TLKIW 255
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 129/298 (43%), Gaps = 15/298 (5%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
KT + S V + F + + V +W+ + V + + +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 76 SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
++I SDD +R+++ T + + H D++ + +P ++SGS D ++++W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 136 VKTG-KCTRVIRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP 193
+ + H V V FN +D S SG D T K+W G+ TL ++
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 194 AVSFAKFSP--NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG-- 249
V++ + P + +++ + D T+K+W+Y + GH + +F+V +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN-----VSFAVFHPTL 240
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPT--ENKIASAGLDGDRTV 305
I+SGSED + +W+ + + L+ + + HPT +N IAS G D TV
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS-GFDNGFTV 297
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 9 YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
Y+ +++ V KF + S D + +++ ++ V F H + I
Sbjct: 42 YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101
Query: 69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSF 127
+A Y+ S SDD T+++W+ + +T GH FV CV FNP+ + SG
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 128 DESIRIWE---------VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
D ++++W + TG+ V P+ D +++ S D T KIWD
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP------DKPYMITASDDLTIKIWDY 215
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
+C+ TL + VSFA F P I+ G+ D TLK+WN S K K + +
Sbjct: 216 QTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274
Query: 239 CITSTFSVTNGKYIVSGSED 258
CI +T YI SG ++
Sbjct: 275 CI-ATHPTGRKNYIASGFDN 293
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
Query: 88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA 147
+ +W+ T + +++++ V F + N I+ GS D IR++ TG+ A
Sbjct: 37 VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 148 HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFI 207
H + S+ + ++SGS D T K+W+ L+ + + V F+P
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 208 LV-GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST--FSVTNGKYIVSGSEDNCVYVW 264
G LD T+K+W S G+ +T T ++ + + + + Y+++ S+D + +W
Sbjct: 156 FASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
D Q K+ + L+GH +V HPT I S DG T+++W
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG--TLKIW 255
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 129/298 (43%), Gaps = 15/298 (5%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
KT + S V + F + + V +W+ + V + + +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 76 SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
++I SDD +R+++ T + + H D++ + +P ++SGS D ++++W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 136 VKTG-KCTRVIRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP 193
+ + H V V FN +D S SG D T K+W G+ TL ++
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 194 AVSFAKFSP--NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG-- 249
V++ + P + +++ + D T+K+W+Y + GH + +F+V +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN-----VSFAVFHPTL 240
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPT--ENKIASAGLDGDRTV 305
I+SGSED + +W+ + + L+ + + HPT +N IAS G D TV
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS-GFDNGFTV 297
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 129/308 (41%), Gaps = 19/308 (6%)
Query: 9 YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
Y+ +++ V KF + S D + +++ ++ V F H + I
Sbjct: 42 YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101
Query: 69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSF 127
+A Y+ S SDD T+++W+ + +T GH FV CV FNP+ + SG
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 128 DESIRIWE---------VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
D ++++W + TG+ V P+ D +++ S D T KIWD
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP------DKPYMITASDDLTIKIWDY 215
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
+C+ TL + VSFA F P I+ G+ D TLK+WN S K K + +
Sbjct: 216 QTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298
CI +T YI SG DN V L LD V S + + I +A
Sbjct: 275 CI-ATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAV 332
Query: 299 LDGDRTVR 306
+ G+ V
Sbjct: 333 IRGNEEVE 340
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
Query: 88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA 147
+ +W+ T + +++++ V F + N I+ GS D IR++ TG+ A
Sbjct: 37 VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 148 HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFI 207
H + S+ + ++SGS D T K+W+ L+ + + V F+P
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 208 LV-GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST--FSVTNGKYIVSGSEDNCVYVW 264
G LD T+K+W S G+ +T T ++ + + + + Y+++ S+D + +W
Sbjct: 156 FASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
D Q K+ + L+GH +V HPT I S DG T+++W
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG--TLKIW 255
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 51 ASSLALVHR--FVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTL 103
AS+ LV R GH+ ++ LA S+ + + SAS D+TL W D + +++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
+GHS V +S S+D+++R+W+V TG+ + H V SV ++ S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLK 217
I+SGS D T K+W +G CL TL+ D VS + PN K I+ D +K
Sbjct: 122 IISGSRDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
WN + + + GH + +T++ +G I S +D + +W+L K + L
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 278 HTDSVISVTCHPTENKIASAGLDG 301
D V S+ P +A+A G
Sbjct: 237 Q-DEVFSLAFSPNRYWLAAATATG 259
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 21/268 (7%)
Query: 11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDL 70
P R FK HS V + DG SAS DKT+ +W ++ RFVGH + +
Sbjct: 57 PVRSFK---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ------SNLIVS 124
+ I S S D+T+++W + CL TL GH+D+V V P S I+S
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 125 GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
D+ ++ W + + H+ + ++ + DG+LI S DG +W+ +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW----NYSAGKFLKIYTGHTN--KKY 238
TL +D S A FSPN ++ L + +K++ Y + G++ + +
Sbjct: 232 YTL-SAQDEVFSLA-FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDL 266
++ +S +G+ + +G DN + VW +
Sbjct: 289 AVSLAWSA-DGQTLFAGYTDNVIRVWQV 315
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 15/223 (6%)
Query: 17 TLTAHSRAVSCVKFS-NDGTLLASASLDKTVIIWSASS-----LALVHRFVGHSEGISDL 70
TL H+ V+ + S LL SAS DKT+I W + V F GHS + D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
++D Y SAS D+TLR+WD T + + GH V V+ + ++++I+SGS D++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHF------NRDGSLIVSGSHDGTCKIWDAGEGACL 184
I++W +K G+C + H+ V+ V + D I+S +D K W+ +
Sbjct: 131 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL 227
I + ++ SP+G I D + LWN +A K +
Sbjct: 190 ADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 102 TLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEV-----KTGKCTRVIRAHSMPVTSV 155
TL GH+ +V + + Q NL++S S D+++ W++ K G R + HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST 215
DG+ +S S D T ++WD G + + K +S I+ G+ D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKT 130
Query: 216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY------IVSGSEDNCVYVWDLQQK 269
+K+W G+ L GH + ++ V N K I+S D V W+L Q
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 270 TMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
+ GH ++ ++T P IASAG DG+
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI 79
H+ ++ + S DGTL+ASA D +++W+ ++ ++ E S LA+S + +++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWL 252
Query: 80 CSA--------SDDRTLRIWDARTPFDCL-KTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
+A S D + D R F K H+ + ++ + +G D
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA---VSLAWSADGQTLFAGYTDNV 309
Query: 131 IRIWEVKTG 139
IR+W+V T
Sbjct: 310 IRVWQVMTA 318
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 51 ASSLALVHR--FVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTL 103
AS+ LV R GH+ ++ LA S+ + + SAS D+TL W D + +++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
+GHS V +S S+D+++R+W+V TG+ + H V SV ++ S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLK 217
I+SGS D T K+W +G CL TL+ D VS + PN K I+ D +K
Sbjct: 122 IISGSRDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
WN + + + GH + +T++ +G I S +D + +W+L K + L
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 278 HTDSVISVTCHPTENKIASAGLDG 301
D V S+ P +A+A G
Sbjct: 237 Q-DEVFSLAFSPNRYWLAAATATG 259
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 21/268 (7%)
Query: 11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDL 70
P R FK HS V + DG SAS DKT+ +W ++ RFVGH + +
Sbjct: 57 PVRSFK---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ------SNLIVS 124
+ I S S D+T+++W + CL TL GH+D+V V P S I+S
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 125 GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
D+ ++ W + + H+ + ++ + DG+LI S DG +W+ +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW----NYSAGKFLKIYTGHT--NKKY 238
TL +D S A FSPN ++ L + +K++ Y + G++ + +
Sbjct: 232 YTL-SAQDEVFSLA-FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPH 288
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDL 266
++ +S +G+ + +G DN + VW +
Sbjct: 289 AVSLAWSA-DGQTLFAGYTDNVIRVWQV 315
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 15/223 (6%)
Query: 17 TLTAHSRAVSCVKFS-NDGTLLASASLDKTVIIWSASS-----LALVHRFVGHSEGISDL 70
TL H+ V+ + S LL SAS DKT+I W + V F GHS + D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
++D Y SAS D+TLR+WD T + + GH V V+ + ++++I+SGS D++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHF------NRDGSLIVSGSHDGTCKIWDAGEGACL 184
I++W +K G+C + H+ V+ V + D I+S +D K W+ +
Sbjct: 131 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL 227
I + ++ SP+G I D + LWN +A K +
Sbjct: 190 ADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 102 TLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEV-----KTGKCTRVIRAHSMPVTSV 155
TL GH+ +V + + Q NL++S S D+++ W++ K G R + HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST 215
DG+ +S S D T ++WD G + + K +S I+ G+ D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKT 130
Query: 216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY------IVSGSEDNCVYVWDLQQK 269
+K+W G+ L GH + ++ V N K I+S D V W+L Q
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 270 TMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
+ GH ++ ++T P IASAG DG+
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI 79
H+ ++ + S DGTL+ASA D +++W+ ++ ++ E S LA+S + +++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWL 252
Query: 80 CSA--------SDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI 131
+A S D + D R F + ++ + +G D I
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSA--AAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 132 RIWEVKTG 139
R+W+V T
Sbjct: 311 RVWQVMTA 318
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 51 ASSLALVHR--FVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTL 103
AS+ LV R GH+ ++ LA S+ + + SAS D+TL W D + +++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
+GHS V +S S+D+++R+W+V TG+ + H V SV ++ S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLK 217
I+SGS D T K+W +G CL TL+ D VS + PN K I+ D +K
Sbjct: 122 IISGSRDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
WN + + + GH + +T++ +G I S +D + +W+L K + L
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 278 HTDSVISVTCHPTENKIASAGLDG 301
D V S+ P +A+A G
Sbjct: 237 Q-DEVFSLAFSPNRYWLAAATATG 259
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 121/266 (45%), Gaps = 21/266 (7%)
Query: 11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDL 70
P R FK HS V + DG SAS DKT+ +W ++ RFVGH + +
Sbjct: 57 PVRSFK---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ------SNLIVS 124
+ I S S D+T+++W + CL TL GH+D+V V P S I+S
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 125 GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
D+ ++ W + + H+ + ++ + DG+LI S DG +W+ +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW----NYSAGKFLKIYTGHTN--KKY 238
TL +D S A FSPN ++ L + +K++ Y + G++ + +
Sbjct: 232 YTL-SAQDEVFSLA-FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVW 264
++ +S +G+ + +G DN + VW
Sbjct: 289 AVSLAWSA-DGQTLFAGYTDNVIRVW 313
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 15/223 (6%)
Query: 17 TLTAHSRAVSCVKFS-NDGTLLASASLDKTVIIWSASS-----LALVHRFVGHSEGISDL 70
TL H+ V+ + S LL SAS DKT+I W + V F GHS + D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
++D Y SAS D+TLR+WD T + + GH V V+ + ++++I+SGS D++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHF------NRDGSLIVSGSHDGTCKIWDAGEGACL 184
I++W +K G+C + H+ V+ V + D I+S +D K W+ +
Sbjct: 131 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL 227
I + ++ SP+G I D + LWN +A K +
Sbjct: 190 ADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 102 TLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEV-----KTGKCTRVIRAHSMPVTSV 155
TL GH+ +V + + Q NL++S S D+++ W++ K G R + HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST 215
DG+ +S S D T ++WD G + + K +S I+ G+ D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKT 130
Query: 216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY------IVSGSEDNCVYVWDLQQK 269
+K+W G+ L GH + ++ V N K I+S D V W+L Q
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 270 TMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
+ GH ++ ++T P IASAG DG+
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 51 ASSLALVHR--FVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTL 103
AS+ LV R GH+ ++ LA S+ + + SAS D+TL W D + +++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
+GHS V +S S+D+++R+W+V TG+ + H V SV ++ S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLK 217
I+SGS D T K+W +G CL TL+ D VS + PN K I+ D +K
Sbjct: 122 IISGSRDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
WN + + + GH + +T++ +G I S +D + +W+L K + L
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 278 HTDSVISVTCHPTENKIASAGLDG 301
D V S+ P +A+A G
Sbjct: 237 Q-DEVFSLAFSPNRYWLAAATATG 259
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 21/268 (7%)
Query: 11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDL 70
P R FK HS V + DG SAS DKT+ +W ++ RFVGH + +
Sbjct: 57 PVRSFK---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ------SNLIVS 124
+ I S S D+T+++W + CL TL GH+D+V V P S I+S
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 125 GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
D+ ++ W + + H+ + ++ + DG+LI S DG +W+ +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW----NYSAGKFLKIYTGHTN--KKY 238
TL +D S A FSPN ++ L + +K++ Y + G++ + +
Sbjct: 232 YTL-SAQDEVFSLA-FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDL 266
++ +S +G+ + +G DN + VW +
Sbjct: 289 AVSLAWSA-DGQTLFAGYTDNVIRVWQV 315
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 15/223 (6%)
Query: 17 TLTAHSRAVSCVKFS-NDGTLLASASLDKTVIIWSASS-----LALVHRFVGHSEGISDL 70
TL H+ V+ + S LL SAS DKT+I W + V F GHS + D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
++D Y SAS D+TLR+WD T + + GH V V+ + ++++I+SGS D++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHF------NRDGSLIVSGSHDGTCKIWDAGEGACL 184
I++W +K G+C + H+ V+ V + D I+S +D K W+ +
Sbjct: 131 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL 227
I + ++ SP+G I D + LWN +A K +
Sbjct: 190 ADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 102 TLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEV-----KTGKCTRVIRAHSMPVTSV 155
TL GH+ +V + + Q NL++S S D+++ W++ K G R + HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST 215
DG+ +S S D T ++WD G + + K +S I+ G+ D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKT 130
Query: 216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY------IVSGSEDNCVYVWDLQQK 269
+K+W G+ L GH + ++ V N K I+S D V W+L Q
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 270 TMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
+ GH ++ ++T P IASAG DG+
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI 79
H+ ++ + S DGTL+ASA D +++W+ ++ ++ E S LA+S + +++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWL 252
Query: 80 CSA--------SDDRTLRIWDARTPFDCL-KTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
+A S D + D R F K H+ + ++ + +G D
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA---VSLAWSADGQTLFAGYTDNV 309
Query: 131 IRIWEVKTG 139
IR+W+V T
Sbjct: 310 IRVWQVMTA 318
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 121/259 (46%), Gaps = 17/259 (6%)
Query: 54 LALVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTLRGHSD 108
L L GH+ ++ LA S+ + + SAS D+TL W D + +++ +GHS
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS 168
V +S S+D+++R+W+V TG+ + H V SV ++ S+I+SGS
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLKLWNYS 222
D T K+W +G CL TL+ D VS + PN K I+ D +K WN +
Sbjct: 121 RDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 223 AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSV 282
+ + GH + +T++ +G I S +D + +W+L K + L D V
Sbjct: 179 QFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEV 234
Query: 283 ISVTCHPTENKIASAGLDG 301
S+ P +A+A G
Sbjct: 235 FSLAFSPNRYWLAAATATG 253
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 21/268 (7%)
Query: 11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDL 70
P R FK HS V + DG SAS DKT+ +W ++ RFVGH + +
Sbjct: 51 PVRSFK---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 107
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ------SNLIVS 124
+ I S S D+T+++W + CL TL GH+D+V V P S I+S
Sbjct: 108 DIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 165
Query: 125 GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
D+ ++ W + + H+ + ++ + DG+LI S DG +W+ +
Sbjct: 166 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 225
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW----NYSAGKFLKIYTGHTN--KKY 238
TL +D S A FSPN ++ L + +K++ Y + G++ + +
Sbjct: 226 YTL-SAQDEVFSLA-FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 282
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDL 266
++ +S +G+ + +G DN + VW +
Sbjct: 283 AVSLAWSA-DGQTLFAGYTDNVIRVWQV 309
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 15/223 (6%)
Query: 17 TLTAHSRAVSCVKFS-NDGTLLASASLDKTVIIWSASS-----LALVHRFVGHSEGISDL 70
TL H+ V+ + S LL SAS DKT+I W + V F GHS + D
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
++D Y SAS D+TLR+WD T + + GH V V+ + ++++I+SGS D++
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 124
Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHF------NRDGSLIVSGSHDGTCKIWDAGEGACL 184
I++W +K G+C + H+ V+ V + D I+S +D K W+ +
Sbjct: 125 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 183
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL 227
I + ++ SP+G I D + LWN +A K +
Sbjct: 184 ADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 225
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 102 TLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEV-----KTGKCTRVIRAHSMPVTSV 155
TL GH+ +V + + Q NL++S S D+++ W++ K G R + HS V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST 215
DG+ +S S D T ++WD G + + K +S I+ G+ D T
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKT 124
Query: 216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY------IVSGSEDNCVYVWDLQQK 269
+K+W G+ L GH + ++ V N K I+S D V W+L Q
Sbjct: 125 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 270 TMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
+ GH ++ ++T P IASAG DG+
Sbjct: 181 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 213
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI 79
H+ ++ + S DGTL+ASA D +++W+ ++ ++ E S LA+S + +++
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWL 246
Query: 80 CSA--------SDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI 131
+A S D + D R F + + ++ + +G D I
Sbjct: 247 AAATATGIKVFSLDPQYLVDDLRPEFAGYS--KAAEPHAVSLAWSADGQTLFAGYTDNVI 304
Query: 132 RIWEVKTG 139
R+W+V T
Sbjct: 305 RVWQVMTA 312
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 129/308 (41%), Gaps = 19/308 (6%)
Query: 9 YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
Y+ +++ V KF + S D + +++ ++ V F H + I
Sbjct: 42 YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101
Query: 69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSF 127
+A Y+ S SDD T+++W+ + +T GH FV CV FNP+ + SG
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 128 DESIRIWE---------VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
D ++++W + TG+ V P+ D +++ S D T KIWD
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP------DKPYMITASDDLTIKIWDY 215
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
+C+ TL + VSFA F P I+ G+ D TLK+WN S K K + +
Sbjct: 216 QTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298
CI +T YI SG DN V L LD V S + + I +A
Sbjct: 275 CI-ATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAV 332
Query: 299 LDGDRTVR 306
+ G+ V
Sbjct: 333 IRGNEEVE 340
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
Query: 88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA 147
+ IW+ T + +++++ V F + N I+ GS D IR++ TG+ A
Sbjct: 37 VEIWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 148 HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFI 207
H + S+ + ++SGS D T K+W+ L+ + + V F+P
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 208 LV-GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST--FSVTNGKYIVSGSEDNCVYVW 264
G LD T+K+W S G+ +T T ++ + + + + Y+++ S+D + +W
Sbjct: 156 FASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
D Q K+ + L+GH +V HPT I S DG T+++W
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG--TLKIW 255
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 15/298 (5%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
KT + S V + F + + V IW+ + V + + +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 76 SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
++I SDD +R+++ T + + H D++ + +P ++SGS D ++++W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 136 VKTG-KCTRVIRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP 193
+ + H V V FN +D S SG D T K+W G+ TL ++
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 194 AVSFAKFSP--NGKFILVGTLDSTLKLWNYSAGKFLKIYTGH-TNKKYCIT-STFSVTNG 249
V++ + P + +++ + D T+K+W+Y + GH +N + + T +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI--- 242
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPT--ENKIASAGLDGDRTV 305
I+SGSED + +W+ + + L+ + + HPT +N IAS G D TV
Sbjct: 243 --IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS-GFDNGFTV 297
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 21/268 (7%)
Query: 11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDL 70
P R FK HS V + DG SAS DKT+ +W ++ RFVGH + +
Sbjct: 57 PVRSFK---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSV 113
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ------SNLIVS 124
+ I S S D+T+++W + CL TL GH+D+V V P S I+S
Sbjct: 114 DIDKKASXIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 125 GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
D+ ++ W + + H+ + ++ + DG+LI S DG +W+
Sbjct: 172 AGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAX 231
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW----NYSAGKFLKIYTGHTN--KKY 238
TL +D S A FSPN ++ L + +K++ Y + G++ + +
Sbjct: 232 YTL-SAQDEVFSLA-FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDL 266
++ +S +G+ + +G DN + VW +
Sbjct: 289 AVSLAWSA-DGQTLFAGYTDNVIRVWQV 315
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 123/264 (46%), Gaps = 19/264 (7%)
Query: 51 ASSLALVHR--FVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTL 103
AS+ LV R GH+ ++ LA S+ + + SAS D+TL W D + +++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
+GHS V +S S+D+++R+W+V TG+ + H V SV ++ S
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX 121
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLK 217
I+SGS D T K+W +G CL TL+ D VS + PN K I+ D +K
Sbjct: 122 IISGSRDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
WN + + + GH + +T++ +G I S +D + +W+L K L
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 278 HTDSVISVTCHPTENKIASAGLDG 301
D V S+ P +A+A G
Sbjct: 237 Q-DEVFSLAFSPNRYWLAAATATG 259
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 17 TLTAHSRAVSCVKFS-NDGTLLASASLDKTVIIWSASS-----LALVHRFVGHSEGISDL 70
TL H+ V+ + S LL SAS DKT+I W + V F GHS + D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
++D Y SAS D+TLR+WD T + + GH V V+ + +++ I+SGS D++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKT 130
Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHF------NRDGSLIVSGSHDGTCKIWDAGEGACL 184
I++W +K G+C + H+ V+ V + D I+S +D K W+ +
Sbjct: 131 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK 225
I + ++ SP+G I D + LWN +A K
Sbjct: 190 ADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 17/213 (7%)
Query: 102 TLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEV-----KTGKCTRVIRAHSMPVTSV 155
TL GH+ +V + + Q NL++S S D+++ W++ K G R + HS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST 215
DG+ +S S D T ++WD G + + K S I+ G+ D T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSV-DIDKKASXIISGSRDKT 130
Query: 216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY------IVSGSEDNCVYVWDLQQK 269
+K+W G+ L GH + ++ V N K I+S D V W+L Q
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF 186
Query: 270 TMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
+ GH ++ ++T P IASAG DG+
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI 79
H+ ++ + S DGTL+ASA D + +W+ ++ + E S LA+S + +++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS-LAFSPNRYWL 252
Query: 80 CSA--------SDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI 131
+A S D + D R F + + ++ + +G D I
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRPEFAGYS--KAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 132 RIWEVKTG 139
R+W+V T
Sbjct: 311 RVWQVXTA 318
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 11/229 (4%)
Query: 34 GTLLASASLDKTVIIWSASSLALVHRFV---GHSEGISDLAWSSDSHYICSASDDRTLRI 90
GTLLAS D+ + IW + + + V GH + +AWS +Y+ SAS D T I
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 91 WDA-RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG---KCTRVIR 146
W + F+C+ TL GH + V V + P NL+ + S D+S+ +WEV +C V+
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Query: 147 AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG--ACLKTLIDDKDPAVSFAKFSPNG 204
+H+ V V ++ L+ S S+D T K++ E C TL + S A F P+G
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA-FDPSG 206
Query: 205 KFILVGTLDSTLKLW-NYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252
+ + + D T+++W Y G + ++ + T S + + I
Sbjct: 207 QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--LALVHRFVGHSEGISDLAWSSDSH 77
H R V V +S G LASAS D T IW + V GH + +AW+ +
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 78 YICSASDDRTLRIW--DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW- 134
+ + S D+++ +W D ++C+ L H+ V V ++P L+ S S+D++++++
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 135 -EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176
E C + H V S+ F+ G + S S D T +IW
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSA---SSLALVHRFVGHSEGISDLAWS 73
TL H V V ++ G LLA+ S DK+V +W V H++ + + W
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159
Query: 74 SDSHYICSASDDRTLRIW-DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR 132
+ SAS D T++++ + + C TL GH V+ + F+P + S S D ++R
Sbjct: 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 133 IW 134
IW
Sbjct: 220 IW 221
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 10/220 (4%)
Query: 53 SLALVHRFVGHSEG-ISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTL-RGHSDF 109
SL L+ R H + LAW+ + S DR +RIW + C L GH
Sbjct: 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT 63
Query: 110 VFCVNFNPQSNLIVSGSFDESIRIWEVKTG--KCTRVIRAHSMPVTSVHFNRDGSLIVSG 167
V V ++P N + S SFD + IW+ +C + H V SV + G+L+ +
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC 123
Query: 168 SHDGTCKIWDAGEG---ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG 224
S D + +W+ E C+ ++++ V + P+ + + + D T+KL+
Sbjct: 124 SRDKSVWVWEVDEEDEYECV-SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED 182
Query: 225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVW 264
++ T ++ + F +G+ + S S+D V +W
Sbjct: 183 DWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIW 221
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 16/206 (7%)
Query: 115 FNPQSNLIVSGSFDESIRIW--EVKTGKCTRVI-RAHSMPVTSVHFNRDGSLIVSGSHDG 171
+NP L+ S D IRIW E + C V+ H V V ++ G+ + S S D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 172 TCKIWDAGEG--ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG---KF 226
T IW + C+ TL ++ S A ++P+G + + D ++ +W +
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVA-WAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 227 LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI--QKLDGHTDSVIS 284
+ + HT + + + + S S D+ V ++ ++ + L+GH +V S
Sbjct: 143 VSVLNSHTQD---VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199
Query: 285 VTCHPTENKIASAGLDGDRTVRVWVQ 310
+ P+ ++AS DRTVR+W Q
Sbjct: 200 LAFDPSGQRLASCS--DDRTVRIWRQ 223
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 27/192 (14%)
Query: 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV--HRFVGHSEGISD 69
Y L +H++ V V + LLASAS D TV ++ V GH +
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199
Query: 70 LAWSSDSHYICSASDDRTLRIWDARTP--------------FDCLKTLRG-HSDFVFCVN 114
LA+ + S SDDRT+RIW P + C+ TL G HS ++ +
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259
Query: 115 FNPQSNLIVSGSFDESIRIWEVKTGK---------CTRVIRAHSMPVTSVHFN-RDGSLI 164
+ + + + D++IR+++ + +AHS V V +N ++ L+
Sbjct: 260 WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319
Query: 165 VSGSHDGTCKIW 176
S S DG W
Sbjct: 320 ASCSDDGEVAFW 331
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 31/256 (12%)
Query: 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
+ +Y+ + +DD+ +R++D+ L L GH V+ + + ++VSGS D ++R+W
Sbjct: 131 EDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVW 188
Query: 135 EVKTGKCTRVIRAHSMPVTSVHF--NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD 192
++K G CT V H+ V + ++ IV+GS D T +W + + + ++ D
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 193 PAVSFAKFSPN--------------------GKFILVGTLDSTLKLWNYSAGKFLKIYTG 232
+ F N G ++ G+ D+TL +W+ + K L I +G
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 308
Query: 233 HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN 292
HT++ Y ST K +S S D + +WDL+ ++ L GHT V + ++
Sbjct: 309 HTDRIY---STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL--SDK 363
Query: 293 KIASAGLDGDRTVRVW 308
+ SA DG ++R W
Sbjct: 364 FLVSAAADG--SIRGW 377
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 35/280 (12%)
Query: 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS--DLAWSSD 75
L+ H V +K+++ G +L S S D+TV +W H F GH+ + D+ +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 76 SHYICSASDDRTLRIWDA-------------------RTPFD---CLKTLRGHSDFVFCV 113
YI + S D TL +W TP + + LRGH V V
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 114 NFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173
+ N++VSGS+D ++ +W+V KC ++ H+ + S ++ + +S S D T
Sbjct: 277 S--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
+IWD G + TL V + S KF++ D +++ W+ A + + ++ H
Sbjct: 335 RIWDLENGELMYTL-QGHTALVGLLRLSD--KFLVSAAADGSIRGWD--ANDYSRKFSYH 389
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ 273
IT TF V++ +VSGSE N +++L+ ++
Sbjct: 390 HTNLSAIT-TFYVSDN-ILVSGSE-NQFNIYNLRSGKLVH 426
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 31/256 (12%)
Query: 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
+ +Y+ + +DD+ +R++D+ L L GH V+ + + ++VSGS D ++R+W
Sbjct: 131 EDNYVITGADDKXIRVYDSINK-KFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVW 188
Query: 135 EVKTGKCTRVIRAHSMPVTSVHF--NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD 192
++K G CT V H+ V + ++ IV+GS D T +W + + + ++ D
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 193 PAVSFAKFSPN--------------------GKFILVGTLDSTLKLWNYSAGKFLKIYTG 232
+ F N G ++ G+ D+TL +W+ + K L I +G
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG 308
Query: 233 HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN 292
HT++ Y ST K +S S D + +WDL+ + L GHT V + ++
Sbjct: 309 HTDRIY---STIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL--SDK 363
Query: 293 KIASAGLDGDRTVRVW 308
+ SA DG ++R W
Sbjct: 364 FLVSAAADG--SIRGW 377
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 127/280 (45%), Gaps = 35/280 (12%)
Query: 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS--DLAWSSD 75
L+ H V +K+++ G +L S S D+TV +W H F GH+ + D+ +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 76 SHYICSASDDRTLRIWDA-------------------RTPFD---CLKTLRGHSDFVFCV 113
YI + S D TL +W TP + + LRGH V V
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 114 NFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173
+ N++VSGS+D ++ +W+V KC ++ H+ + S ++ + +S S D T
Sbjct: 277 S--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
+IWD G TL V + S KF++ D +++ W+ A + + ++ H
Sbjct: 335 RIWDLENGELXYTL-QGHTALVGLLRLSD--KFLVSAAADGSIRGWD--ANDYSRKFSYH 389
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ 273
IT TF V++ +VSGSE N +++L+ ++
Sbjct: 390 HTNLSAIT-TFYVSDN-ILVSGSE-NQFNIYNLRSGKLVH 426
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 24/267 (8%)
Query: 15 FKTLTAHSRAVSCV-----KFSNDGTLLASASLDKTVIIWSAS-----SLALVHRFVG-H 63
F T H+ + C ++ G +A LD ++ + ++A + V H
Sbjct: 94 FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH 153
Query: 64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS--NL 121
+ +S ++++ I +AS D T +WD + L++ GH V C++ P N
Sbjct: 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 122 IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181
VSG D+ +W++++G+C + H V SV + G SGS D TC+++D
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL--R 270
Query: 182 ACLKTLIDDKDPAV---SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
A + I K+ + S FS +G+ + G D T+ +W+ G + I GH N+
Sbjct: 271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-- 328
Query: 239 CITSTFSVT-NGKYIVSGSEDNCVYVW 264
ST V+ +G SGS D+ + VW
Sbjct: 329 --VSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 101 KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVH---F 157
+TL+GH + V C+++ IVS S D + +W+ T T A +MP T V +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT---TNKEHAVTMPCTWVMACAY 114
Query: 158 NRDGSLIVSGSHDGTCKIW----DAGEG-ACLKTLIDDKDPAVSFAKFSPNGKFILVGTL 212
G I G D C ++ D E A K + +S F+ + IL +
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI 272
D T LW+ +G+ L+ + GH C+ S T G VSG D VWD++ +
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET-GNTFVSGGCDKKAMVWDMRSGQCV 233
Query: 273 QKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
Q + H V SV +P+ + AS G D D T R++
Sbjct: 234 QAFETHESDVNSVRYYPSGDAFAS-GSD-DATCRLY 267
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS 50
L H VS ++ S DGT S S D T+ +W+
Sbjct: 322 LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 9/234 (3%)
Query: 63 HSEGISDLAWSSD----SHYICSASDDRTLRIWDARTP-FDCLKTLRGHSDFVFCVNFNP 117
H + I +AW ++ S + + S D +++W R D +L GH V V+ +
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 118 QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
+ S S D IR+W+++ GK + I A + ++ F+ D + +G+H G I+
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK 237
G +L D + + +SP+GK++ G +D + +++ + GK L GH
Sbjct: 151 VESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209
Query: 238 YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE 291
+ TFS + + +V+ S+D + ++D+Q + L GH V++V P +
Sbjct: 210 RSL--TFS-PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS 76
+L + + + +S DG LAS ++D + I+ ++ L+H GH+ I L +S DS
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218
Query: 77 HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV 136
+ +ASDD ++I+D + + TL GH+ +V V F P VS S D+S+++W+V
Sbjct: 219 QLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
Query: 137 KTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
T C H V V +N +GS IVS D I+D
Sbjct: 278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 122/296 (41%), Gaps = 19/296 (6%)
Query: 15 FKTLTAHSRAVSCVKFS----NDGTLLASASLDKTVIIWS--ASSLALVHRFVGHSEGIS 68
FK AH A+ V + + + + SLD V +W L L GH G+
Sbjct: 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV 84
Query: 69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
+ S S+S D +R+WD G D + + F+P S + +G+
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-AWTLAFSPDSQYLATGTHV 143
Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
+ I+ V++GK + + S+ ++ DG + SG+ DG I+D G L TL
Sbjct: 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT----NKKYCITSTF 244
P S FSP+ + ++ + D +K+++ +GH N +C T
Sbjct: 204 GHAMPIRSLT-FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT- 261
Query: 245 SVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD 300
+ VS S D V VWD+ +T + H D V V + +KI S G D
Sbjct: 262 ------HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 21/286 (7%)
Query: 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEG--ISDLAWSSDSHYICSASDDRTLRIW 91
G +LA A LD +V +WSASS ++ G IS +AW + +Y+ + +++W
Sbjct: 127 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
Query: 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSM 150
D + L+ + HS V +++N S ++ SGS I +V+ + + HS
Sbjct: 186 DVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 242
Query: 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDA--GEGA--CLKTLIDDKDP--AVSFAKFSPNG 204
V + + DG + SG +D +W + GEG L+T + AV++ + N
Sbjct: 243 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 302
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS--EDNCVY 262
GT D +++WN +G L H+ + S + K ++SG N +
Sbjct: 303 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----VCSILWSPHYKELISGHGFAQNQLV 358
Query: 263 VWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+W + +L GHT V+S+T P +ASA D T+R+W
Sbjct: 359 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA--ADETLRLW 402
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%)
Query: 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS----SLALVHRFVGHSEGISD 69
H TL+ HS+ V ++++ DG LAS D V +W ++ + F H +
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 70 LA---WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
+A W S+ + DR +RIW+ + CL + HS V + ++P ++SG
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ-VCSILWSPHYKELISGH 350
Query: 127 --FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176
+ IW+ T ++ H+ V S+ + DG+ + S + D T ++W
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 21/286 (7%)
Query: 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEG--ISDLAWSSDSHYICSASDDRTLRIW 91
G +LA A LD +V +WSASS ++ G IS +AW + +Y+ + +++W
Sbjct: 116 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
Query: 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSM 150
D + L+ + HS V +++N S ++ SGS I +V+ + + HS
Sbjct: 175 DVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231
Query: 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDA--GEGA--CLKTLIDDKDP--AVSFAKFSPNG 204
V + + DG + SG +D +W + GEG L+T + AV++ + N
Sbjct: 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS--EDNCVY 262
GT D +++WN +G L H+ + S + K ++SG N +
Sbjct: 292 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----VCSILWSPHYKELISGHGFAQNQLV 347
Query: 263 VWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+W + +L GHT V+S+T P +ASA D T+R+W
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA--ADETLRLW 391
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS----SLALVHRFVGHSEGISD 69
H TL+ HS+ V ++++ DG LAS D V +W ++ + F H +
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 70 LA---WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
+A W S+ + DR +RIW+ CL + HS V + ++P ++SG
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNV-CSGACLSAVDAHSQ-VCSILWSPHYKELISGH 339
Query: 127 --FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176
+ IW+ T ++ H+ V S+ + DG+ + S + D T ++W
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 21/286 (7%)
Query: 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEG--ISDLAWSSDSHYICSASDDRTLRIW 91
G +LA A LD +V +WSASS ++ G IS +AW + +Y+ + +++W
Sbjct: 36 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSM 150
D + L+ + HS V +++N S ++ SGS I +V+ + + HS
Sbjct: 95 DVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 151
Query: 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDA--GEGAC--LKTLIDDKDP--AVSFAKFSPNG 204
V + + DG + SG +D +W + GEG L+T + AV++ + N
Sbjct: 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 211
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS--EDNCVY 262
GT D +++WN +G L H+ + S + K ++SG N +
Sbjct: 212 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----VCSILWSPHYKELISGHGFAQNQLV 267
Query: 263 VWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
+W + +L GHT V+S+T P +ASA D T+R+W
Sbjct: 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA--ADETLRLW 311
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS----SLALVHRFVGHSEGISD 69
H TL+ HS+ V ++++ DG LAS D V +W ++ + F H +
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 70 LA---WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
+A W S+ + DR +RIW+ CL + HS V + ++P ++SG
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNV-CSGACLSAVDAHSQ-VCSILWSPHYKELISGH 259
Query: 127 --FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176
+ IW+ T ++ H+ V S+ + DG+ + S + D T ++W
Sbjct: 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 17/225 (7%)
Query: 16 KTLTAH-SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF-----VGHSEGISD 69
+ LT H A SC + T L + S D+T ++W ++ + F GH+ +
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 70 LAWSS-DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
L+ +S +++ S S D T+R+WD R ++T GH + V F P +GS D
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Query: 129 ESIRIWEVKTGKCTRVIRA------HSMP-VTSVHFNRDGSLIVSGSHDGTCKIWD---A 178
+ R+++++TG +V + +P VTSV F+ G L+ +G +G C +WD A
Sbjct: 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223
L TL + + +S S +G + G+ D LK+W +S
Sbjct: 331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 131/304 (43%), Gaps = 25/304 (8%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
+TL HS V + ++ + + SAS D +I+W+A + H H + + A++ +
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 76 SHYICSASDDRTLRIWDARTPFD------CLKTLRGHSDFVFCVNFNP-QSNLIVSGSFD 128
+ D I++ + D + L GH + + P Q +++GS D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 129 ESIRIWEVKTGKCTRVI-----RAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGA 182
++ +W+V TG+ + H+ V S+ N + ++ +SGS D T ++WD +
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT----NKKY 238
+ ++ KF P+G+ G+ D T +L++ G L++Y N+
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298
+TS +G+ + +G + YVWD M+ L +S E +I+ G
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS--------HEGRISCLG 351
Query: 299 LDGD 302
L D
Sbjct: 352 LSSD 355
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 15/220 (6%)
Query: 95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTS 154
T C +TL+GHS V+ +++ P+ N IVS S D + +W T + T I+ H V
Sbjct: 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Query: 155 VHFNRDGSLIVSGSHDGTCKIWDA-------GEGACLKTLIDDKDPAVSFAKFSPNGKFI 207
F +G + G D C I++ G + L K A S +
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173
Query: 208 LVGTLDSTLKLWNYSAGKFLKIY-----TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVY 262
+ G+ D T LW+ + G+ + I+ +GHT ++ + + N +SGS D V
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD--VLSLSINSLNANMFISGSCDTTVR 231
Query: 263 VWDLQ-QKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301
+WDL+ ++ GH + SV P + + DG
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 114/257 (44%), Gaps = 20/257 (7%)
Query: 39 SASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD 98
S + +T + ++ + L GHS + L W+ + ++I SAS D L +W+A T
Sbjct: 41 SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-------CTRVIRAHSMP 151
++ H +V F P + G D + I+ + + +RV+ H
Sbjct: 101 -THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY 159
Query: 152 VTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA------VSFAKFSPNG 204
+S + D + +++GS D TC +WD G + ++ + P+ +S + S N
Sbjct: 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI-SIFGSEFPSGHTADVLSLSINSLNA 218
Query: 205 KFILVGTLDSTLKLWNYS-AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYV 263
+ G+ D+T++LW+ + ++ Y GH I S +G+ +GS+D +
Sbjct: 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD---INSVKFFPDGQRFGTGSDDGTCRL 275
Query: 264 WDLQQKTMIQKLDGHTD 280
+D++ +Q + D
Sbjct: 276 FDMRTGHQLQVYNREPD 292
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIW---SASSLALVHRFVGHSEG--- 66
R +T H ++ VKF DG + S D T ++ + L + +R ++
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 67 -ISDLAWSSDSHYICSASDDRTLRIWD---ARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
++ +A+S + + + +WD A + H + C+ + + +
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 123 VSGSFDESIRIW 134
+GS+D++++IW
Sbjct: 360 CTGSWDKNLKIW 371
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 30/229 (13%)
Query: 18 LTAHSRAVSCV------KFSNDGTLLASASLDKTVIIWSASS------LALVHR-FVGHS 64
L HS V+ + K + D +L S S DKTV+IW + H+ GH+
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVS 124
+SDLA S ++ + S+S D+TLR+WD RT K GH V+ V F+P + I+S
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 125 GSFDESIRIWEVKTGKC---TRVIRAHSMPVTSVHFNRD----------GSLIVSGSHDG 171
+ I++W + G+C + HS V+ V ++ S DG
Sbjct: 136 AGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194
Query: 172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWN 220
K+W+ ++ + V+ SPNGK+I G D L +W+
Sbjct: 195 RLKVWNT--NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 16/217 (7%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
K LT H+ VS + S + S+S DKT+ +W + RFVGH + +A+S D
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 76 SHYICSASDDRTLRIWD--ARTPFDCLKTLRGHSDFVFCVNFNP---QSNLI-------V 123
+ I SA +R +++W+ F + HSD+V CV ++P +N +
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 124 SGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC 183
S +D +++W + +AH V + + +G I +G D IWD
Sbjct: 189 SVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247
Query: 184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWN 220
+ D A F+P +++ VGT D +K++N
Sbjct: 248 PQREFDAGSTINQIA-FNPKLQWVAVGT-DQGVKIFN 282
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 26/253 (10%)
Query: 73 SSDSHYICSASDDRTLRIW----DARTPFDCL--KTLRGHSDFVFCVNFNPQSNLIVSGS 126
+ DS + S S D+T+ IW + + + + K L GH+ FV + + ++ +S S
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD-AGEGACLK 185
+D+++R+W+++TG + H V SV F+ D I+S + K+W+ GE
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS 155
Query: 186 TLIDDKDPAVSFAKFSPNGK-----------FILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
++ VS ++SP K F VG D LK+WN + F YT
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-WDGRLKVWNTN---FQIRYTFKA 211
Query: 235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI 294
++ + S NGKYI +G +D + +WD+ T Q+ ++ + +P K+
Sbjct: 212 HESNVNHLSIS-PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP---KL 267
Query: 295 ASAGLDGDRTVRV 307
+ D+ V++
Sbjct: 268 QWVAVGTDQGVKI 280
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 35/206 (16%)
Query: 128 DESIRIWEVKTGKCTRVIRAHSMPVTSV------HFNRDGSLIVSGSHDGTCKIWDAGE- 180
+ S+ I VK G ++ HS VTS+ N D +++SGS D T IW E
Sbjct: 4 NSSLDIQVVKRG----ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEE 59
Query: 181 ------GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
G K L + VS S F + + D TL+LW+ G K + GH
Sbjct: 60 EQNGYFGIPHKALTG-HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ 118
Query: 235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL--QQKTMIQKLDGHTDSVISVTCHP--- 289
++ Y + FS N + + +G+E + +W++ + K + + H+D V V P
Sbjct: 119 SEVYSV--AFSPDNRQILSAGAERE-IKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 290 TENKI-------ASAGLDGDRTVRVW 308
+ NK+ AS G DG ++VW
Sbjct: 176 SANKVQPFAPYFASVGWDG--RLKVW 199
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 17 TLTAHSRAV---SCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAW 72
L AH+ +V V FS + L ASA DKT+ +W + + F G H++ + LA
Sbjct: 137 NLQAHNASVWDAKVVSFSENKFLTASA--DKTIKLWQNDKV--IKTFSGIHNDVVRHLAV 192
Query: 73 SSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR 132
D H+I S S+D +++ D T D L+T GH FV+C+ P +++ G D ++R
Sbjct: 193 VDDGHFI-SCSNDGLIKLVDXHTG-DVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVR 249
Query: 133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176
IW + G +VI ++ + SV +G +IV GS D +I+
Sbjct: 250 IWSKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDNLVRIF 292
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 136/310 (43%), Gaps = 22/310 (7%)
Query: 8 PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGI 67
P+ Y+ TL H + V V +D + +AS S D TV +WS L +
Sbjct: 4 PFTGYQLSATLKGHDQDVRDVVAVDD-SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFL 62
Query: 68 SDLAWSSDSHYICSASDDRTLR--IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSG 125
+ + + S+ + D + A + D L TL GH V ++F Q +++SG
Sbjct: 63 NSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISG 120
Query: 126 SFDESIRIWEVKTGKCTRVIRAHSMPV---TSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
S+D++ ++W K G ++AH+ V V F+ + L + S D T K+W +
Sbjct: 121 SWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFL--TASADKTIKLWQNDK-- 174
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
+KT + V +G FI D +KL + G L+ Y GH + YCI
Sbjct: 175 VIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIK- 232
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
+ NG IVS ED V +W + ++ Q + S+ SV C + I + D
Sbjct: 233 --LLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGS---SD 286
Query: 303 RTVRVWVQDR 312
VR++ Q++
Sbjct: 287 NLVRIFSQEK 296
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 85/191 (44%), Gaps = 17/191 (8%)
Query: 62 GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP-QSN 120
GHS + LAW SD + S +D ++IWDAR+ T H+ V V + P QSN
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF-TKTNHNAAVKAVAWCPWQSN 273
Query: 121 LIVS--GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS--GSHDGTCKIW 176
L+ + G+ D+ I W TG + A S VTS+ ++ I+S G D IW
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIW 332
Query: 177 DAGEGACLKTL-IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HT 234
K + I D V ++ SP+G+ + D LK W ++Y G H
Sbjct: 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW--------RVYDGDHV 384
Query: 235 NKKYCITSTFS 245
+ IT T S
Sbjct: 385 KRPIPITKTPS 395
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223
+V+ + + +W+A G+ D+ V+ K+S +G F+ VG + + +++ +
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165
Query: 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ-QKTMIQKLDGHTDSV 282
L+ GH + C++ N + SGS ++ D++ I L GH+ V
Sbjct: 166 QTKLRTMAGHQARVGCLS-----WNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220
Query: 283 ISVTCHPTENKIASAGLDGDRTVRVW 308
+ ++AS G D V++W
Sbjct: 221 CGLAWRSDGLQLASGG--NDNVVQIW 244
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 18/206 (8%)
Query: 111 FCVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVIRA-HSMPVTSVHFNRDGSLIVSGS 168
+ +N SNL +V+ + + ++ +W +G + + S V SV ++ DGS + G
Sbjct: 94 YYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL 153
Query: 169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTL-----KLWNYSA 223
+G I+D L+T+ + S N + G+ + ++ N+
Sbjct: 154 GNGLVDIYDVESQTKLRTMAGHQ---ARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQI 210
Query: 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVI 283
G GH+++ + ++G + SG DN V +WD + H +V
Sbjct: 211 GTL----QGHSSE---VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 263
Query: 284 SVT-CHPTENKIASAGLDGDRTVRVW 308
+V C N +A+ G D+ + W
Sbjct: 264 AVAWCPWQSNLLATGGGTMDKQIHFW 289
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 16/236 (6%)
Query: 6 TPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR--FVGH 63
T P + T HS + K S G AS + V IW + + +
Sbjct: 43 TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF 102
Query: 64 SEGISDLAWSSDSHYICSASDDRT----LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS 119
S + D++W S+S I + + R + ++D T L G + + V+F P
Sbjct: 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---SNGNLTGQARAMNSVDFKPSR 159
Query: 120 NL-IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
I+SGS D ++ I+E K H+ V SV +N DGSL S DGT +++
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
Query: 179 GEGACLKTLIDD--KDPAVSFAKF----SPNGKFILVGTLDSTLKLWNYSAGKFLK 228
+G DD K+ A S + F SP+G I + D T+K+WN + K K
Sbjct: 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 18/220 (8%)
Query: 1 MAAAQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR 59
+A + PP+K FK T H++ V V+++ DG+L AS D T+++++
Sbjct: 172 VAIFEGPPFK----FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227
Query: 60 F-------VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHS---DF 109
F V HS + L WS D I SAS D+T++IW+ T KT+ + D
Sbjct: 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQ 286
Query: 110 VFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH 169
+ + Q+ +VS S + I + G +V H+ +T++ + DG + S
Sbjct: 287 QLGIIWTKQA--LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA 344
Query: 170 DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV 209
+G WD G + D ++ K + G V
Sbjct: 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV 384
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 8/173 (4%)
Query: 12 YRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIW--SASSLALVHRFVGHSEGIS 68
Y H K T S SCV SND +A D V ++ S +S++ V V H I+
Sbjct: 437 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEIT 495
Query: 69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT--LRGHSDFVFCVNFNPQSNLIVSGS 126
+A+S++ ++ + R + + F+ T H+ V CV+++P + + +GS
Sbjct: 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 555
Query: 127 FDESIRIWEVKTGKCTRVI--RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
D S+ +W + +I AH+M + + + IVS D K W+
Sbjct: 556 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 18 LTAHSRAVSCVKFSNDGTL-LASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS 76
LT +RA++ V F + S S D TV I+ F H++ + + ++ D
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 77 HYICSASDDRTLRIWDA----RTPF---DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE 129
S D T+ +++ +T D LK + HS VF + ++P I S S D+
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV-AHSGSVFGLTWSPDGTKIASASADK 261
Query: 130 SIRIWEVKTGKCTRVI 145
+I+IW V T K + I
Sbjct: 262 TIKIWNVATLKVEKTI 277
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/381 (22%), Positives = 148/381 (38%), Gaps = 102/381 (26%)
Query: 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL------------------------A 55
AHS +V + +S DGT +ASAS DKT+ IW+ ++L A
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296
Query: 56 LVH-------RFV------------GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP 96
LV FV GH++ I+ L+ S+D + SA + + WD T
Sbjct: 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRI----------------------- 133
H+ + + + +L S+D+ +++
Sbjct: 357 ISNRVFPDVHATMITGIKTTSKGDLFTV-SWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 415
Query: 134 -------WEVKTGKCTRVIRAHS------MPVTS----VHFNRDGSLIVSGSHDGTCKIW 176
++ C + I +S +P++ V + D + G D ++
Sbjct: 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475
Query: 177 DAGEGACLKTLIDDKDPA-VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI-----Y 230
GA + + PA ++ FS NG F++ D + K+ YS ++ +
Sbjct: 476 KL-SGASVSEVKTIVHPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVANNFELAHTNSW 532
Query: 231 TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT---MIQKLDGHTDSVISVTC 287
T HT K C++ +S N + + +GS DN V VW++ + + +I K H S ++
Sbjct: 533 TFHTAKVACVS--WSPDNVR-LATGSLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVI 588
Query: 288 HPTENKIASAGLDGDRTVRVW 308
E I SAG D + ++ W
Sbjct: 589 WLNETTIVSAGQDSN--IKFW 607
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 10/161 (6%)
Query: 112 CVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIVSGSHD 170
CV + + G D + ++++ + V H +TSV F+ +G+ +V+
Sbjct: 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 512
Query: 171 GTCKIWDAGEGACLK-----TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK 225
+ L T K VS+ SP+ + G+LD+++ +WN +
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSW---SPDNVRLATGSLDNSVIVWNMNKPS 569
Query: 226 FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266
I + + S + N IVS +D+ + W++
Sbjct: 570 DHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNV 609
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 7/174 (4%)
Query: 133 IWEVKTGKCT--RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA-CLKTLID 189
++ V G T + HS T + G SG G +IWD + LKT I
Sbjct: 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100
Query: 190 D-KDPAVSFAKFSPNGKFILVGTLDSTL-KLWNYSAGKFLKIYTGHTNKKYCITSTFSVT 247
P + S + + VG ++ + G TG + F +
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV--DFKPS 158
Query: 248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301
I+SGS+DN V +++ HT V SV +P + AS G DG
Sbjct: 159 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 48/247 (19%)
Query: 37 LASASLDKTVIIWSASSLALVHR-------FVGHSEGISDLAWS-SDSHYICSASDDRTL 88
L SAS D T+ +W ++ HR F GH+ + D+AW S +DD+ L
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 89 RIWDARTPFDCLK--TLRGHSDFVFCVNFNPQSNLIVS-GSFDESIRIWEVKTGKCT-RV 144
IWD R T+ H+ V C++FNP S I++ GS D+++ +W+++ K
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 145 IRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
+H + V ++ + +++ S D +WD + ++ D +D
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED----------- 365
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT-NGKYIV-SGSEDNCV 261
+ L I+ GHT K S FS N +I+ S SEDN +
Sbjct: 366 ------------------GPPELLFIHGGHTAK----ISDFSWNPNEPWIICSVSEDNIM 403
Query: 262 YVWDLQQ 268
VW + +
Sbjct: 404 QVWQMAE 410
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 35 TLLASASLDKTVIIW---SASSLALVHRFVGHSEGISDLAWSSDSHYI-CSASDDRTLRI 90
+L S + D+ ++IW + ++ H H+ ++ L+++ S +I + S D+T+ +
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304
Query: 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEV-KTGKCTRVIRA- 147
WD R L + H D +F V ++P + I++ S D + +W++ K G+ A
Sbjct: 305 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 364
Query: 148 ------------HSMPVTSVHFNRDGSLIV-SGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
H+ ++ +N + I+ S S D ++W E + +D++P
Sbjct: 365 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN-----VYNDEEPE 419
Query: 195 VSFAKFSPN 203
+ ++ N
Sbjct: 420 IPASELETN 428
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 48/247 (19%)
Query: 37 LASASLDKTVIIWSASSLALVHR-------FVGHSEGISDLAWS-SDSHYICSASDDRTL 88
L SAS D T+ +W ++ HR F GH+ + D+AW S +DD+ L
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 89 RIWDARTPFDCLK--TLRGHSDFVFCVNFNPQSNLIVS-GSFDESIRIWEVKTGKCT-RV 144
IWD R T+ H+ V C++FNP S I++ GS D+++ +W+++ K
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 145 IRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
+H + V ++ + +++ S D +WD + ++ D +D
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED----------- 367
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT-NGKYIV-SGSEDNCV 261
+ L I+ GHT K S FS N +I+ S SEDN +
Sbjct: 368 ------------------GPPELLFIHGGHTAK----ISDFSWNPNEPWIICSVSEDNIM 405
Query: 262 YVWDLQQ 268
VW + +
Sbjct: 406 QVWQMAE 412
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 35 TLLASASLDKTVIIW---SASSLALVHRFVGHSEGISDLAWSSDSHYI-CSASDDRTLRI 90
+L S + D+ ++IW + ++ H H+ ++ L+++ S +I + S D+T+ +
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 306
Query: 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEV-KTGKCTRVIRA- 147
WD R L + H D +F V ++P + I++ S D + +W++ K G+ A
Sbjct: 307 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 366
Query: 148 ------------HSMPVTSVHFNRDGSLIV-SGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
H+ ++ +N + I+ S S D ++W E + +D++P
Sbjct: 367 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE-----NVYNDEEPE 421
Query: 195 VSFAKFSPN 203
+ ++ N
Sbjct: 422 IPASELETN 430
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 48/247 (19%)
Query: 37 LASASLDKTVIIWSASSLALVHR-------FVGHSEGISDLAWS-SDSHYICSASDDRTL 88
L SAS D T+ +W ++ HR F GH+ + D+AW S +DD+ L
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 89 RIWDARTPFDCLK--TLRGHSDFVFCVNFNPQSNLIVS-GSFDESIRIWEVKTGKCT-RV 144
IWD R T+ H+ V C++FNP S I++ GS D+++ +W+++ K
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 145 IRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
+H + V ++ + +++ S D +WD + ++ D +D
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED----------- 369
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT-NGKYIV-SGSEDNCV 261
+ L I+ GHT K S FS N +I+ S SEDN +
Sbjct: 370 ------------------GPPELLFIHGGHTAK----ISDFSWNPNEPWIICSVSEDNIM 407
Query: 262 YVWDLQQ 268
VW + +
Sbjct: 408 QVWQMAE 414
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Query: 35 TLLASASLDKTVIIW---SASSLALVHRFVGHSEGISDLAWSSDSHYI-CSASDDRTLRI 90
+L S + D+ ++IW + ++ H H+ ++ L+++ S +I + S D+T+ +
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 308
Query: 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEV-KTGKCTRVIRA- 147
WD R L + H D +F V ++P + I++ S D + +W++ K G+ A
Sbjct: 309 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 368
Query: 148 ------------HSMPVTSVHFNRDGSLIV-SGSHDGTCKIWDAGEGACLKTLIDDKDP 193
H+ ++ +N + I+ S S D ++W E + +D++P
Sbjct: 369 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE-----NVYNDEEP 422
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 92 DARTPFDCLKTLRGHSDFVFCVNFNPQS---NLIVSGSFDESIRIWEVKTGKCT--RVIR 146
D P ++ D + C++F+P + N +++GS+ +R WEV+ T + +
Sbjct: 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83
Query: 147 AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF 206
H+ PV V ++ DGS + + S D T K+WD ++ D +PN
Sbjct: 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 207 ILVGTLDSTLKLWN 220
++ G+ D TLK W+
Sbjct: 144 VMTGSWDKTLKFWD 157
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 1 MAAAQTPPYKPYRHFKTLTAHSRAVSCVKFSND---GTLLASASLDKTVIIWSA--SSLA 55
+A T + P + + ++ ++ C+ FS G L + S V W S
Sbjct: 18 FGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT 77
Query: 56 LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNF 115
+ H+ + D+ WS D + +AS D+T ++WD + + + H V +++
Sbjct: 78 IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS--NQAIQIAQHDAPVKTIHW 135
Query: 116 --NPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146
P + +++GS+D++++ W+ ++ V++
Sbjct: 136 IKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 220 NYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ--KTMIQKLDG 277
N++ K +++ + + C++ + G ++++GS N V W++Q +T+ +
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 278 HTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
HT V+ V +K+ +A D+T ++W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASC--DKTAKMW 113
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 30/190 (15%)
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
+ H + + F P ++S S D ++IW VK G R + H VT + G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDP------------------AVSFAK-----F 200
++S S DGT ++W+ G G + T ++P +S +K F
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 201 SPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY---CITSTFSVTNGKYIVSGSE 257
GK+++ G + + + N F K T K+ C + T N YI +G E
Sbjct: 256 GTYGKYVIAGHVSGVITVHNV----FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE 311
Query: 258 DNCVYVWDLQ 267
+ + WDL+
Sbjct: 312 NGMLAQWDLR 321
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 118 QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
Q + G+ + I++ + + +AH +T + F G ++S S D KIW
Sbjct: 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 167
Query: 178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN 235
+G+ +TLI + A G+ +L +LD T++LW G + + N
Sbjct: 168 VKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 224
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI 79
AH ++ +KF G L S+S D + IWS + +GH ++D+A +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 80 CSASDDRTLRIWDART 95
SAS D T+R+W+ T
Sbjct: 197 LSASLDGTIRLWECGT 212
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV 253
AV AK +FIL GT + +K+ + + +I H ++ IT +G+ ++
Sbjct: 101 AVDTAKLQMR-RFIL-GTTEGDIKVLDSNFNLQREIDQAHVSE---ITKLKFFPSGEALI 155
Query: 254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
S S+D + +W ++ + + L GH +V + + SA LDG T+R+W
Sbjct: 156 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG--TIRLW 208
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/246 (18%), Positives = 95/246 (38%), Gaps = 36/246 (14%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR---------------- 59
+TL H V+ + + G + SASLD T+ +W + +H
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
Query: 60 FVGHSEGISDLAWSSDSH--------YICSASDDRTLRIWDARTPFDCLKTLRGHSDFV- 110
FVG + +++ S ++ Y+ + + + + F +T++ S F
Sbjct: 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV---FSKEQTIQLPSKFTC 291
Query: 111 ----FCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT--RVIRAHSMPVTSVHFNRDGSLI 164
V+ N +N I +G + + W++++ +C + P+ +V+F G+L
Sbjct: 292 SCNSLTVDGN-NANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALF 349
Query: 165 VSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG 224
VS D + K+ + + I+ + P + +F V +S ++
Sbjct: 350 VSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN 409
Query: 225 KFLKIY 230
F +Y
Sbjct: 410 NFCALY 415
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 35/240 (14%)
Query: 59 RFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTP------FDCLKTLRGHSDFVF 111
R GH + L+W+S+ S ++ SASDD T+ +WD D GHS V
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 112 CVNFN-PQSNLIVSGSFDESIRIWEVK---TGKCTRVIRAHSMPVTSVHFNRDGSLIVS- 166
V ++ +L S + D+ + IW+ + T K + ++ AH+ V + FN I++
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 167 GSHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYS-- 222
GS D T +WD L T KD + +SP+ + IL + D L +W+ S
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKD-EIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 223 ------------AGKFLKIYTGHTNKKYCITSTFSVTNGK--YIVSGSEDNCVYVWDLQQ 268
+ L I+ GHT K S FS + I S SEDN + +W + +
Sbjct: 353 GEEQSAEDAEDGPPELLFIHGGHTAK----ISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 21/185 (11%)
Query: 18 LTAHSRAVSCVKFSN-DGTLLASASLDKTVIIW---SASSLALVHRFVGHSEGISDLAWS 73
T HS V V + +L S + D+ ++IW S ++ H H+ ++ L+++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 74 SDSHYI-CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESI 131
S +I + S D+T+ +WD R L T H D +F V+++P + I++ S D +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 132 RIWEV-KTGKCTRVIRA-------------HSMPVTSVHFNRDGSLIV-SGSHDGTCKIW 176
+W++ K G+ A H+ ++ +N + ++ S S D +IW
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Query: 177 DAGEG 181
E
Sbjct: 405 QMAEN 409
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 30/190 (15%)
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
+ H + + F P ++S S D ++IW VK G R + H VT + G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDP------------------AVSFAK-----F 200
++S S DGT ++W+ G G + T ++P +S +K F
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 201 SPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY---CITSTFSVTNGKYIVSGSE 257
GK+++ G + + + N F K T K+ C + T N YI +G E
Sbjct: 253 GTYGKYVIAGHVSGVITVHNV----FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE 308
Query: 258 DNCVYVWDLQ 267
+ + WDL+
Sbjct: 309 NGMLAQWDLR 318
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 118 QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
Q + G+ + I++ + + +AH +T + F G ++S S D KIW
Sbjct: 105 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 164
Query: 178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN 235
+G+ +TLI + A G+ +L +LD T++LW G + + N
Sbjct: 165 VKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 221
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI 79
AH ++ +KF G L S+S D + IWS + +GH ++D+A +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 80 CSASDDRTLRIWDART 95
SAS D T+R+W+ T
Sbjct: 194 LSASLDGTIRLWECGT 209
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV 253
AV AK +FIL GT + +K+ + + +I H ++ IT +G+ ++
Sbjct: 98 AVDTAKLQMR-RFIL-GTTEGDIKVLDSNFNLQREIDQAHVSE---ITKLKFFPSGEALI 152
Query: 254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
S S+D + +W ++ + + L GH +V + + SA LDG T+R+W
Sbjct: 153 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG--TIRLW 205
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/246 (18%), Positives = 95/246 (38%), Gaps = 36/246 (14%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR---------------- 59
+TL H V+ + + G + SASLD T+ +W + +H
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 231
Query: 60 FVGHSEGISDLAWSSDSH--------YICSASDDRTLRIWDARTPFDCLKTLRGHSDFV- 110
FVG + +++ S ++ Y+ + + + + F +T++ S F
Sbjct: 232 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV---FSKEQTIQLPSKFTC 288
Query: 111 ----FCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT--RVIRAHSMPVTSVHFNRDGSLI 164
V+ N +N I +G + + W++++ +C + P+ +V+F G+L
Sbjct: 289 SCNSLTVDGN-NANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAA-GALF 346
Query: 165 VSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG 224
VS D + K+ + + I+ + P + +F V +S ++
Sbjct: 347 VSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDEVSQFCYVSDDESNGEVLEVGKN 406
Query: 225 KFLKIY 230
F +Y
Sbjct: 407 NFCALY 412
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 103/236 (43%), Gaps = 35/236 (14%)
Query: 59 RFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTP------FDCLKTLRGHSDFVF 111
R GH + L+W+S+ S ++ SASDD T+ +WD D GHS V
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 112 CVNFN-PQSNLIVSGSFDESIRIWEVK---TGKCTRVIRAHSMPVTSVHFNRDGSLIVS- 166
V ++ +L S + D+ + IW+ + T K + ++ AH+ V + FN I++
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 167 GSHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYS-- 222
GS D T +WD L T KD + +SP+ + IL + D L +W+ S
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKD-EIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 223 ------------AGKFLKIYTGHTNKKYCITSTFSVTNGK--YIVSGSEDNCVYVW 264
+ L I+ GHT K S FS + I S SEDN +W
Sbjct: 353 GEEQSAEDAEDGPPELLFIHGGHTAK----ISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 103 LRGHSDFVFCVNFNPQSNL---IVSGSFDESIRIWEVKTG-KCTRVIRA------HSMPV 152
LRGH + +++N SNL ++S S D ++ +W++ G K +++ A HS V
Sbjct: 175 LRGHQKEGYGLSWN--SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 153 TSVHFNR-DGSLIVSGSHDGTCKIWDAGEGACLKT--LIDDKDPAVSFAKFSPNGKFILV 209
V ++ SL S + D IWD K L+D V+ F+P +FIL
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 210 -GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ 268
G+ D T+ LW+ K LK++T ++K +S N + S D + VWDL +
Sbjct: 293 TGSADKTVALWDLRNLK-LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 18 LTAHSRAVSCVKFSN-DGTLLASASLDKTVIIW---SASSLALVHRFVGHSEGISDLAWS 73
T HS V V + +L S + D+ + IW S ++ H H+ ++ L+++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 74 SDSHYI-CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESI 131
S +I + S D+T+ +WD R L T H D +F V+++P + I++ S D +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 132 RIWEV-KTGKCTRVIRA-------------HSMPVTSVHFNRDGSLIV-SGSHDGTCKIW 176
+W++ K G+ A H+ ++ +N + ++ S S D +IW
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Query: 177 DAGEG 181
E
Sbjct: 405 QXAEN 409
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 33/239 (13%)
Query: 59 RFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWD-ARTP-----FDCLKTLRGHSDFVF 111
R GH + L+W+ + S ++ SASDD T+ +WD + P D GH+ V
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 112 CVNFN-PQSNLIVSGSFDESIRIWEVK---TGKCTRVIRAHSMPVTSVHFNRDGSLIVS- 166
V+++ +L S + D+ + IW+ + T K + + AH+ V + FN I++
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYS--- 222
GS D T +WD + + ++SP+ + IL + D L +W+ S
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
Query: 223 -----------AGKFLKIYTGHTNKKYCITSTFSVTNGK--YIVSGSEDNCVYVWDLQQ 268
+ L I+ GHT K S FS + I S SEDN + VW + +
Sbjct: 352 EEQSPEDAEDGPPELLFIHGGHTAK----ISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 35 TLLASASLDKTVIIW---SASSLALVHRFVGHSEGISDLAWSSDSHYI-CSASDDRTLRI 90
+L S + D+ ++IW S ++ H H+ ++ L+++ S +I + S D+T+ +
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEV-KTGKCTRVIRA- 147
WD R L + H D +F V ++P + I++ S D + +W++ K G+ A
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 148 ------------HSMPVTSVHFNRDGSLIV-SGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
H+ ++ +N + ++ S S D ++W E + +D+DP
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE-----NIYNDEDPE 415
Query: 195 VSFAKFSPNGK 205
S P G+
Sbjct: 416 GS---VDPEGQ 423
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 35/251 (13%)
Query: 57 VHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDARTPFDCLKT--LRGHSDFVFCV 113
VHR+ + + W D+ S+S D+TL++WD T L+T + + V+
Sbjct: 97 VHRY-----SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT----LQTADVFNFEETVYSH 147
Query: 114 NFNPQSN---LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN-RDGSLIVSGSH 169
+ +P S L+ G+ +++ ++K+G C+ +++ H + +V ++ R ++ + S
Sbjct: 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA 207
Query: 170 DGTCKIWDAGEGA-CLKTLID---DKDPAVSFAKFSPNGK------------FILVGTLD 213
D K+WD + CL TL K AV A + NGK + VGT D
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-D 266
Query: 214 STLKLWNYSAGKFLKIYTGH--TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM 271
+ ++LWN S G+ + G N K + T S V + + V+ +
Sbjct: 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326
Query: 272 IQKLDGHTDSV 282
I L GH +V
Sbjct: 327 ITMLKGHYKTV 337
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 114/285 (40%), Gaps = 62/285 (21%)
Query: 21 HSRAVSCVK-FSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI 79
H +V V+ + +D + S+S DKT+ +W ++L F + + SH++
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF--------NFEETVYSHHM 149
Query: 80 CSASDDRTLRIWDARTP---------FDCLKTLRGHSDFVFCVNFNPQSNLIVS-GSFDE 129
S L R P C L+GH + V+++P+ + I++ S D
Sbjct: 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209
Query: 130 SIRIWEVK------------TGKCTRVIR----AHSMPVTSVHFNRDGSLIVSGSHDGTC 173
+++W+V+ GK ++ + AH+ V + F DG +++ D
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK--------------FILVGTLDSTLKLW 219
++W++ G ++ V++ K N K F+ V ST+ ++
Sbjct: 270 RLWNSSNG---------ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV-PYGSTIAVY 319
Query: 220 NYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVW 264
+G+ + + GH C +N + + SGS D + W
Sbjct: 320 TVYSGEQITMLKGHYKTVDCCVFQ---SNFQELYSGSRDCNILAW 361
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 35/219 (15%)
Query: 90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS 149
I + R PF + ++ V C+ ++ N IV+G + +R+W KTG V+ H
Sbjct: 91 IAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR 149
Query: 150 MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV 209
P+ SV +N+DG+ I+S + +W+ G ++ F L
Sbjct: 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ-------------------HFELK 190
Query: 210 GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK 269
T S++ N+S L + V + K+++ G + ++V+ + +K
Sbjct: 191 ETGGSSINAENHSGDGSLGV------------DVEWVDDDKFVIPGPK-GAIFVYQITEK 237
Query: 270 TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
T KL GH + + + T + SA DG T+R+W
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDG--TLRIW 274
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 21/222 (9%)
Query: 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS------ 68
L H + VK++ DGT + S ++ I+W+ S ++ F G S
Sbjct: 142 LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201
Query: 69 ---------DLAWSSDSHYICSASDDRTLRIW-DARTPFDCLKTLRGHSDFVFCVNFNPQ 118
D+ W D ++ +TP L GH + + FN
Sbjct: 202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP---TGKLIGHHGPISVLEFNDT 258
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
+ L++S S D ++RIW G HS + S + D ++S S DG+ ++W
Sbjct: 259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSL 317
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWN 220
+ L I D P + + S +G+ V +D + +++
Sbjct: 318 KQNTLLALSIVDGVPIFA-GRISQDGQKYAVAFMDGQVNVYD 358
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 19/216 (8%)
Query: 70 LAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE 129
LAWS D + I + ++ LR+W+ L L H + V +N I+S +
Sbjct: 114 LAWSHDGNSIVTGVENGELRLWNKTGAL--LNVLNFHRAPIVSVKWNKDGTHIISMDVEN 171
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNR---DGSLIVSGSHDGTCKIWDAG-EGACLK 185
+W V +G + +S++ DGSL V K G +GA
Sbjct: 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFV 231
Query: 186 TLIDDKDPA---------VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK 236
I +K P +S +F+ K +L + D TL++W+ G + GH+
Sbjct: 232 YQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ- 290
Query: 237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI 272
I S V + K ++S S D V +W L+Q T++
Sbjct: 291 --SIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLL 323
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 121/296 (40%), Gaps = 26/296 (8%)
Query: 13 RHFKTLTAHS----RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
RH L+A S V+C+ +S+DG + + + + +W+ + AL++ H I
Sbjct: 95 RHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG-ALLNVLNFHRAPIV 153
Query: 69 DLAWSSDSHYICSASDDRTLRIWDARTP-----FDCLKT---------LRGHSDFVFCVN 114
+ W+ D +I S + +W+ + F+ +T G V
Sbjct: 154 SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213
Query: 115 FNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174
+ ++ G +I ++++ T + H P++ + FN L++S S DGT +
Sbjct: 214 WVDDDKFVIPGP-KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272
Query: 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
IW G G VS A + + K I ++D +++LW+ L +
Sbjct: 273 IWHGGNGNSQNCFYGHSQSIVS-ASWVGDDKVISC-SMDGSVRLWSLKQNTLLALSI--V 328
Query: 235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHP 289
+ S KY V+ D V V+DL++ + + L G+ D +++ P
Sbjct: 329 DGVPIFAGRISQDGQKYAVA-FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 128/322 (39%), Gaps = 50/322 (15%)
Query: 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD-- 75
LT H R ++ VK++ +G LL S S D + +W + + + GH+ I WS D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI----WSIDVD 83
Query: 76 --SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE---- 129
+ Y + S D ++++WD C+ T + V V F+P N ++ D
Sbjct: 84 CFTKYCVTGSADYSIKLWDVSNG-QCVATWKSPVP-VKRVEFSPCGNYFLA-ILDNVMKN 140
Query: 130 --SIRIWEVKTGKCT-RVIRAHSMPVTSV--HFNRD----------GSLIVSGSHDGTCK 174
SI I+E++ T + + P+ + H D G I++G DG
Sbjct: 141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200
Query: 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
+D ID + ++S +FSP+ + + + D+ L + S + LK Y
Sbjct: 201 KYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY---- 256
Query: 235 NKKYCITSTFSVTNGKYIV---SGSEDNCVYVWDLQQ------------KTMIQKLDGHT 279
+ C +T +T K + G E V + + I ++ GH
Sbjct: 257 -ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315
Query: 280 DSVISVTCHPTENKIASAGLDG 301
+ +V P AS G DG
Sbjct: 316 GPLNTVAISPQGTSYASGGEDG 337
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ 118
+ GH ++ + ++ + + S S D + +W + + L TL GH+ ++ ++ +
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCF 85
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS-----GSHDGTC 173
+ V+GS D SI++W+V G+C ++ +PV V F+ G+ ++ + G+
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 174 KIWD------------AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY 221
I++ E K + + A + A +S GK+I+ G D + ++
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDV 204
Query: 222 S 222
S
Sbjct: 205 S 205
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 7/179 (3%)
Query: 87 TLRIWDARTPFDCLKT-LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI 145
TL IWD P +K L + + + +P S + S D +I +W++ R
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 146 RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK 205
+ H+ + + + DG+ + +G D T + WD EG L+ D + + P G+
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGE 237
Query: 206 FILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVW 264
++ VG S +++ + + +++ + C+ S GK+ VS +DN + W
Sbjct: 238 WLAVGMESSNVEVLHVNKPDKYQLHLHES----CVLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 16/214 (7%)
Query: 3 AAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
AA TP K LT+ + A + S D + S D + +W + LV +F G
Sbjct: 127 AAPTPRIK-----AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDF---VFCVNFNPQS 119
H++G S + S+D + + D T+R WD R + L+ H DF +F + + P
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG----RQLQQH-DFTSQIFSLGYCPTG 236
Query: 120 NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG 179
+ G ++ + V + + H V S+ F G VS D W
Sbjct: 237 EWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295
Query: 180 EGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD 213
GA + + +V S + K+I+ G+ D
Sbjct: 296 YGASI--FQSKESSSVLSCDISVDDKYIVTGSGD 327
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 5/145 (3%)
Query: 152 VTSVHFNRDGSLIVSGSHDGTCKIWD-AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG 210
+ S DG ++ G T IWD A +K + PA SP+ K
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 211 TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT 270
D + +W+ ++ + GHT+ CI + +G + +G DN V WDL++
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS---NDGTKLWTGGLDNTVRSWDLREGR 216
Query: 271 MIQKLDGHTDSVISVTCHPTENKIA 295
+Q+ D T + S+ PT +A
Sbjct: 217 QLQQHD-FTSQIFSLGYCPTGEWLA 240
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 171 GTCKIWD---AGEGACLKTL-IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF 226
G K+WD G + + L ++D + K P+G ++VG STL +W+ +A
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA-PT 130
Query: 227 LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVT 286
+I T+ + + K S D + VWDL +T++++ GHTD +
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 287 CHPTENKIASAGLDGDRTVRVW 308
K+ + GL D TVR W
Sbjct: 191 ISNDGTKLWTGGL--DNTVRSW 210
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 42/161 (26%)
Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIW-------------------------- 49
+ H+ SC+ SNDGT L + LD TV W
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236
Query: 50 -------SASSLALVH-------RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART 95
+S++ ++H + H + L ++ + S D L W RT
Sbjct: 237 EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW--RT 294
Query: 96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV 136
P+ S V + + IV+GS D+ ++EV
Sbjct: 295 PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 45/263 (17%)
Query: 62 GHSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGHSDFVFCVNF-NPQ- 118
H+E I D + + S D+T++I++ + TL GH V+ V++ +P+
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHF--NRDGSLIVSGSHDGTCK 174
++ S S+D + IW+ + G+ +++ HS V SV + + G +++ S DG
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 175 IWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
+ + E G +ID V+ A ++P T++ + H
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAP-------ATIEEDGE---------------H 164
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVW----DLQQKTMIQKLDGHTDSVISVTCHP 289
K + V+G DN V +W D Q + L+GH+D V V P
Sbjct: 165 NGTK----------ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 290 TE-NKIASAGLDGDRTVRVWVQD 311
T + A + DRT +W QD
Sbjct: 215 TVLLRSYMASVSQDRTCIIWTQD 237
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 12 YRHFKTLTAHSRAVSCVKFSND--GTLLASASLDKTVIIWSAS----SLALVHRFVGHSE 65
++ TLT H V V +++ GT+LAS S D V+IW S VH HS
Sbjct: 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV--HSA 100
Query: 66 GISDLAWSSDSH---YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP----- 117
++ + W+ + + ++SD + + + H+ V ++ P
Sbjct: 101 SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160
Query: 118 --------QSNLIVSGSFDESIRIWEVKTGKCTRVIRA----HSMPVTSVHFNRD---GS 162
+S V+G D ++IW+ + T V+ + HS V V ++ S
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Query: 163 LIVSGSHDGTCKIW--DAGEGACLKTLI-DDKDPAVSF-AKFSPNGKFILVGTLDSTLKL 218
+ S S D TC IW D +G KTL+ ++K P V + A +S +G + + D+ + L
Sbjct: 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
Query: 219 W 219
W
Sbjct: 281 W 281
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 45/263 (17%)
Query: 62 GHSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGHSDFVFCVNF-NPQ- 118
H+E I D + + S D+T++I++ + TL GH V+ V++ +P+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHF--NRDGSLIVSGSHDGTCK 174
++ S S+D + IW+ + G+ +++ HS V SV + + G L++ S DG
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 175 IWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
+ + E G +ID V+ A ++P T++ G
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAP-------ATIEED----------------GE 163
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVW----DLQQKTMIQKLDGHTDSVISVTCHP 289
N + V+G DN V +W D Q + L+GH+D V V P
Sbjct: 164 HN---------GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 290 TE-NKIASAGLDGDRTVRVWVQD 311
T + A + DRT +W QD
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQD 237
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 12 YRHFKTLTAHSRAVSCVKFSND--GTLLASASLDKTVIIWSAS----SLALVHRFVGHSE 65
++ TLT H V V +++ GT+LAS S D V+IW S VH HS
Sbjct: 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSA 100
Query: 66 GISDLAWSSDSH---YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP----- 117
++ + W+ + + ++SD + + + H+ V ++ P
Sbjct: 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160
Query: 118 --------QSNLIVSGSFDESIRIWEVKTGKCTRVIRA----HSMPVTSVHFNRD---GS 162
+S V+G D ++IW+ + T V+ + HS V V ++ S
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Query: 163 LIVSGSHDGTCKIW--DAGEGACLKTLI-DDKDPAVSF-AKFSPNGKFILVGTLDSTLKL 218
+ S S D TC IW D +G KTL+ ++K P V + A +S +G + + D+ + L
Sbjct: 221 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
Query: 219 W 219
W
Sbjct: 281 W 281
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 49/265 (18%)
Query: 62 GHSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGHSDFVFCVNF-NPQ- 118
H+E I D + + S D+T++I++ + TL GH V+ V++ +P+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHF--NRDGSLIVSGSHDGTCK 174
++ S S+D + IW+ + G+ +++ HS V SV + + G L++ S DG
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 175 IWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
+ + E G +ID V+ A ++P T++ + H
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAP-------ATIEEDGE---------------H 164
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVW----DLQQKTMIQKLDGHTDSVISVTCHP 289
K + V+G DN V +W D Q + L+GH+D V V P
Sbjct: 165 NGTK----------ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 290 T---ENKIASAGLDGDRTVRVWVQD 311
T + +AS + DRT +W QD
Sbjct: 215 TVLLRSYLAS--VSQDRTCIIWTQD 237
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 12 YRHFKTLTAHSRAVSCVKFSND--GTLLASASLDKTVIIWSAS----SLALVHRFVGHSE 65
++ TLT H V V +++ GT+LAS S D V+IW S VH HS
Sbjct: 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSA 100
Query: 66 GISDLAWSSDSH---YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP----- 117
++ + W+ + + ++SD + + + H+ V ++ P
Sbjct: 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160
Query: 118 --------QSNLIVSGSFDESIRIWEVKTGKCTRVIRA----HSMPVTSVHFNRD---GS 162
+S V+G D ++IW+ + T V+ + HS V V ++ S
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Query: 163 LIVSGSHDGTCKIW--DAGEGACLKTLI-DDKDPAVSF-AKFSPNGKFILVGTLDSTLKL 218
+ S S D TC IW D +G KTL+ ++K P V + A +S +G + + D+ + L
Sbjct: 221 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
Query: 219 W 219
W
Sbjct: 281 W 281
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 49/265 (18%)
Query: 62 GHSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGHSDFVFCVNF-NPQ- 118
H+E I D + + S D+T++I++ + TL GH V+ V++ +P+
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHF--NRDGSLIVSGSHDGTCK 174
++ S S+D + IW+ + G+ +++ HS V SV + + G L++ S DG
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 175 IWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
+ + E G +ID V+ A ++P T++ G
Sbjct: 129 VVEFKENGTTSPIIIDAHAIGVNSASWAP-------ATIEED----------------GE 165
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVW----DLQQKTMIQKLDGHTDSVISVTCHP 289
N + V+G DN V +W D Q + L+GH+D V V P
Sbjct: 166 HN---------GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 290 T---ENKIASAGLDGDRTVRVWVQD 311
T + +AS + DRT +W QD
Sbjct: 217 TVLLRSYLAS--VSQDRTCIIWTQD 239
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 12 YRHFKTLTAHSRAVSCVKFSND--GTLLASASLDKTVIIWSAS----SLALVHRFVGHSE 65
++ TLT H V V +++ GT+LAS S D V+IW S VH HS
Sbjct: 45 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSA 102
Query: 66 GISDLAWSSDSH---YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP----- 117
++ + W+ + + ++SD + + + H+ V ++ P
Sbjct: 103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162
Query: 118 --------QSNLIVSGSFDESIRIWEVKTGKCTRVIRA----HSMPVTSVHFNRD---GS 162
+S V+G D ++IW+ + T V+ + HS V V ++ S
Sbjct: 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222
Query: 163 LIVSGSHDGTCKIW--DAGEGACLKTLI-DDKDPAVSF-AKFSPNGKFILVGTLDSTLKL 218
+ S S D TC IW D +G KTL+ ++K P V + A +S +G + + D+ + L
Sbjct: 223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 282
Query: 219 W 219
W
Sbjct: 283 W 283
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 129/301 (42%), Gaps = 39/301 (12%)
Query: 18 LTAH-SRAVSCVKFS--NDGTLLASASLDKTVIIW--------SASSLALVHRFVGHSEG 66
T H S V+ VKFS L S VI+W ++ + + F +
Sbjct: 59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118
Query: 67 ISDLAWSSDSHYICSASDDR----TLRIWDARTPFDCLKTLRGHSDFVFCVNFN---PQS 119
ISD++W + +C + R WD+ + L + GHS + + P
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLKQSRPMR 175
Query: 120 NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP---VTSVHFNRD-GSLIVSGSHDGTCKI 175
++ V D S+ ++ K + R H V V F+ D G +++ D
Sbjct: 176 SMTVGD--DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233
Query: 176 WDAGEGACLKTLIDDKDPAVS--FA-KFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG 232
+D G LK + DD++P FA + + KF VG D+T+++W+ + K ++ +T
Sbjct: 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTL 292
Query: 233 HT----NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH 288
N++ + +T NG+ I+S S D + ++L +++ + GH + ++T +
Sbjct: 293 DKQQLGNQQVGVVAT---GNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN 348
Query: 289 P 289
P
Sbjct: 349 P 349
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 63 HSEG--ISDLAWSSDS-HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFV----FCVNF 115
H +G + D+ +S DS ++ + DR + +D ++ + LK + + V F +++
Sbjct: 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSW 261
Query: 116 NPQSNLIVSGSFDESIRIWEVKTGKCTR--VIRAHSMPVTSVHFNRDGS-LIVSGSHDGT 172
G+ D +IR+W+V T KC + + + V G+ I+S S DGT
Sbjct: 262 LDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320
Query: 173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223
++ G LKT I + ++ +P ++ G+ D + W+ S+
Sbjct: 321 LNFYELGHDEVLKT-ISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 366
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
+ + + S D + I+ + P +K L H D V + + S L+ SG+ D I+ W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA-DACIKRW 610
Query: 135 EV 136
V
Sbjct: 611 NV 612
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 45/262 (17%)
Query: 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGHSDFVFCVNF-NPQ-S 119
H+E I D + S D+T++I++ + TL GH V+ V++ +P+
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 120 NLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHF--NRDGSLIVSGSHDGTCKI 175
++ S S+D + IW+ + G+ +++ HS V SV + + G ++ S DG +
Sbjct: 68 TILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSV 127
Query: 176 WDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
+ E G +ID V+ A ++P T++ + H
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAP-------ATIEEDGE---------------HN 165
Query: 235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVW----DLQQKTMIQKLDGHTDSVISVTCHPT 290
K + V+G DN V +W D Q + L+GH+D V V PT
Sbjct: 166 GTK----------ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
Query: 291 E-NKIASAGLDGDRTVRVWVQD 311
+ A + DRT +W QD
Sbjct: 216 VLLRSYXASVSQDRTCIIWTQD 237
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 102/241 (42%), Gaps = 35/241 (14%)
Query: 12 YRHFKTLTAHSRAVSCVKFSND--GTLLASASLDKTVIIWSAS----SLALVHRFVGHSE 65
++ TLT H V V +++ GT+LAS S D V IW S VH HS
Sbjct: 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAV--HSA 100
Query: 66 GISDLAWSSDSH---YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP----- 117
++ + W+ + + ++SD + + + H+ V ++ P
Sbjct: 101 SVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160
Query: 118 --------QSNLIVSGSFDESIRIWEVKTGKCTRVIRA----HSMPVTSVHFNRD---GS 162
+S V+G D ++IW+ + T V+ + HS V V ++ S
Sbjct: 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Query: 163 LIVSGSHDGTCKIW--DAGEGACLKTLI-DDKDPAVSF-AKFSPNGKFILVGTLDSTLKL 218
S S D TC IW D +G KTL+ ++K P V + A +S +G + + D+ + L
Sbjct: 221 YXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
Query: 219 W 219
W
Sbjct: 281 W 281
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 29/296 (9%)
Query: 18 LTAH-SRAVSCVKFS--NDGTLLASASLDKTVIIW--------SASSLALVHRFVGHSEG 66
T H S V+ VKFS L S VI+W ++ + + F +
Sbjct: 59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118
Query: 67 ISDLAWSSDSHYICSASDDR----TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
ISD++W + +C + R WD+ + L + GHS + + QS
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLK-QSRPX 174
Query: 123 VSGSF--DESIRIWEVKTGKCTRVIRAHSMP---VTSVHFNRD-GSLIVSGSHDGTCKIW 176
S + D S+ ++ K + R H V V F+ D G +++ D +
Sbjct: 175 RSXTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234
Query: 177 DAGEGACLKTLIDDKDPAVS--FA-KFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
D G LK + DD++P FA + + KF VG D+T+++W+ + K ++ +T
Sbjct: 235 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTLD 293
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP 289
+ T I+S S D + ++L +++ + GH + ++T +P
Sbjct: 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 63 HSEG--ISDLAWSSDS-HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFV----FCVNF 115
H +G + D+ +S DS ++ + DR + +D ++ + LK + + V F +++
Sbjct: 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSW 261
Query: 116 NPQSNLIVSGSFDESIRIWEVKTGKCTR--VIRAHSMPVTSVHFNRDGS-LIVSGSHDGT 172
G+ D +IR+W+V T KC + + + V G+ I+S S DGT
Sbjct: 262 LDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320
Query: 173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW 219
++ G LKT I + ++ +P ++ G+ D + W
Sbjct: 321 LNFYELGHDEVLKT-ISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 26 SCVKFSNDGTLLASASLDKTVIIWSASSLAL-VHRFVGHSEGISDLAWSS---------- 74
S + S T +A+ + ++++ S + R+ + I+ ++W
Sbjct: 492 SYISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 551
Query: 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
+ + + S D + I+ + P +K L H D V + + S L+ SG+ D I+ W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGA-DACIKRW 610
Query: 135 EV 136
V
Sbjct: 611 NV 612
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 105 GHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSV--HFNRDG 161
GH+ V + + P + N+I SGS D ++ +WE+ G +R PV ++ H R G
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE---PVITLEGHTKRVG 135
Query: 162 ---------SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFA-KFSPNGKFILVGT 211
++++S D +WD G GA + TL D P ++ +S +G I
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 212 LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG---SEDNCVYVWD--- 265
D +++ G + + + F V+ GK + +G + V +WD
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF-VSEGKILTTGFSRMSERQVALWDTKH 254
Query: 266 LQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
L++ +Q+LD + V+ P N + G GD ++R
Sbjct: 255 LEEPLSLQELD-TSSGVLLPFFDPDTNIVYLCG-KGDSSIR 293
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 17 TLTAHSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSLALVHRFVG--HSEGISDLAWS 73
TL H++ V V + +L SA D +++W + A V H + I + WS
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 74 SDSHYICSASDDRTLRIWDAR 94
D IC++ D+ +R+ + R
Sbjct: 186 RDGALICTSCRDKRVRVIEPR 206
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 30/234 (12%)
Query: 92 DARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSM 150
D P C GH+ V + + P + N+I SGS D ++ +WE+ G +R
Sbjct: 71 DKNVPLVC-----GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE--- 122
Query: 151 PVTSV--HFNRDG---------SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFA- 198
PV ++ H R G ++++S D +WD G GA + TL D P ++
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 199 KFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG--- 255
+S +G I D +++ G + + + F V+ GK + +G
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF-VSEGKILTTGFSR 241
Query: 256 SEDNCVYVWD---LQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
+ V +WD L++ +Q+LD + V+ P N + G GD ++R
Sbjct: 242 MSERQVALWDTKHLEEPLSLQELD-TSSGVLLPFFDPDTNIVYLCG-KGDSSIR 293
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 17 TLTAHSRAVSCVKF-SNDGTLLASASLDKTVIIWSASSLALVHRFVG--HSEGISDLAWS 73
TL H++ V V + +L SA D +++W + A V H + I + WS
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 74 SDSHYICSASDDRTLRIWDAR 94
D IC++ D+ +R+ + R
Sbjct: 186 RDGALICTSCRDKRVRVIEPR 206
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 36 LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDAR 94
LLA A + I + ++ + +VGH I++L + D + + S S D LR+W+ +
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 95 TPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146
T D L + GH D V +++ I+S D S+++W + + + I+
Sbjct: 183 T--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 140 KCTRVIRA-HSMPVTSVHFN---RDGSLIV---SGSHDGTC-KIWDAGEGACLKTLID-- 189
KC ++ H+ P+ V FN ++G +V GS+ T + GE L++ +D
Sbjct: 44 KCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDAD 103
Query: 190 -DKDPAVSFAKFSPNGKFILVGTLDS--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
D++ + N L+ S +++ N + +K Y GH N + F
Sbjct: 104 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK--FHP 161
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQ---KLDGHTDSVISVTCHPTENKIASAGLDGDR 303
+ ++S S+D+ + +W++Q T++ ++GH D V+S KI S G+ D
Sbjct: 162 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM--DH 219
Query: 304 TVRVW 308
++++W
Sbjct: 220 SLKLW 224
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 36 LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDAR 94
LLA A + I + ++ + +VGH I++L + D + + S S D LR+W+ +
Sbjct: 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 95 TPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146
T D L + GH D V +++ I+S D S+++W + + + I+
Sbjct: 147 T--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 140 KCTRVIRA-HSMPVTSVHFN---RDGSLIV---SGSHDGTC-KIWDAGEGACLKTLID-- 189
KC ++ H+ P+ V FN ++G +V GS+ T + GE L++ +D
Sbjct: 8 KCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDAD 67
Query: 190 -DKDPAVSFAKFSPNGKFILVGTLDS--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
D++ + N L+ S +++ N + +K Y GH N + F
Sbjct: 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK--FHP 125
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQ---KLDGHTDSVISVTCHPTENKIASAGLDGDR 303
+ ++S S+D+ + +W++Q T++ ++GH D V+S KI S G+ D
Sbjct: 126 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM--DH 183
Query: 304 TVRVW 308
++++W
Sbjct: 184 SLKLW 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 71/308 (23%)
Query: 36 LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDAR 94
LLA A + I + ++ + +VGH I++L + D + + S S D LR+W+ +
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 95 TPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-- 148
T D L + GH D V +++ I+S D S+++W + + + I+
Sbjct: 146 T--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Query: 149 ------SMPVTS--VHF----NRD------------GSLIVSGSHDGTCKIWDAGEGACL 184
+ P S +HF RD G LI+S S + W G+ +
Sbjct: 204 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK---M 260
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLD-STLKLWNYSAGKFLKIYTGHTNKKYCITST 243
+ ID P+ S ++G D S +W +++ T K +
Sbjct: 261 EDDIDKIKPSES--------NVTILGRFDYSQCDIW------YMRFSTDFWQKMLAL--- 303
Query: 244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDR 303
G++ +YVWDL+ + D H ++T H I D
Sbjct: 304 -----------GNQVGKLYVWDLEVE------DPHKAKCTTLTHHKCGAAIRQTSFSRDS 346
Query: 304 TVRVWVQD 311
++ + V D
Sbjct: 347 SILIAVCD 354
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 140 KCTRVIRA-HSMPVTSVHFN---RDGSLIV---SGSHDGTC-KIWDAGEGACLKTLID-- 189
KC ++ H+ P+ V FN ++G +V GS+ T + GE L++ +D
Sbjct: 7 KCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDAD 66
Query: 190 -DKDPAVSFAKFSPNGKFILVGTLDS--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
D++ + N L+ S +++ N + +K Y GH N + F
Sbjct: 67 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK--FHP 124
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQ---KLDGHTDSVISVTCHPTENKIASAGLDGDR 303
+ ++S S+D+ + +W++Q T++ ++GH D V+S KI S G+ D
Sbjct: 125 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM--DH 182
Query: 304 TVRVW 308
++++W
Sbjct: 183 SLKLW 187
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 36 LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDAR 94
LLA A + I + ++ + +VGH I++L + D + + S S D LR+W+ +
Sbjct: 82 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 95 TPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146
T D L + GH D V +++ I+S D S+++W + + + I+
Sbjct: 142 T--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 140 KCTRVIRA-HSMPVTSVHFN---RDGSLIV---SGSHDGTC-KIWDAGEGACLKTLID-- 189
KC ++ H+ P+ V FN ++G +V GS+ T + GE L++ +D
Sbjct: 3 KCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDAD 62
Query: 190 -DKDPAVSFAKFSPNGKFILVGTLDS--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
D++ + N L+ S +++ N + +K Y GH N + F
Sbjct: 63 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK--FHP 120
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQ---KLDGHTDSVISVTCHPTENKIASAGLDGDR 303
+ ++S S+D+ + +W++Q T++ ++GH D V+S KI S G+ D
Sbjct: 121 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM--DH 178
Query: 304 TVRVW 308
++++W
Sbjct: 179 SLKLW 183
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 36 LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDAR 94
LLA A + I + ++ + +VGH I++L + D + + S S D LR+W+ +
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 95 TPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146
T D L + GH D V +++ I+S D S+++W + + + I+
Sbjct: 146 T--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 140 KCTRVIRA-HSMPVTSVHFN---RDGSLIV---SGSHDGTC-KIWDAGEGACLKTLID-- 189
KC ++ H+ P+ V FN ++G +V GS+ T + GE L++ +D
Sbjct: 7 KCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDAD 66
Query: 190 -DKDPAVSFAKFSPNGKFILVGTLDS--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
D++ + N L+ S +++ N + +K Y GH N + F
Sbjct: 67 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK--FHP 124
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQ---KLDGHTDSVISVTCHPTENKIASAGLDGDR 303
+ ++S S+D+ + +W++Q T++ ++GH D V+S KI S G+ D
Sbjct: 125 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM--DH 182
Query: 304 TVRVW 308
++++W
Sbjct: 183 SLKLW 187
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 127/318 (39%), Gaps = 77/318 (24%)
Query: 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSA---------SSLALVHRFVGHSEGISDL 70
+H + V + GT+ A+ S D ++ +WS +SL + +F +DL
Sbjct: 21 SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKF-------NDL 73
Query: 71 AWSSDSHYICSASDDRTLRIW---DARTPFDCLKTLRGHSDFVFCVNFNP-QSNLIVSGS 126
WS ++ I A D+ +L ++ +A + + HS V V FN Q N++ SG
Sbjct: 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG 133
Query: 127 FDESIRIWEVKTGKCTR-------VIRAHSM----PVTSVHFNRD-GSLIVSGSHDGTCK 174
+ I IW++ KCT + SM V S+ +N+ + S
Sbjct: 134 NNGEIFIWDMN--KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS 191
Query: 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
IWD + K + + SPN S +K + L + H
Sbjct: 192 IWD----------LKAKKEVIHLSYTSPN----------SGIK-------QQLSVVEWHP 224
Query: 235 -NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ-KTMIQKLD-GHTDSVISVT-CHPT 290
N T+T S D + +WDL+ T +Q L+ GH ++S+ CH
Sbjct: 225 KNSTRVATATGS----------DNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 291 ENKIASAGLDGDRTVRVW 308
E+ + S+G D TV +W
Sbjct: 275 EHLLLSSGR--DNTVLLW 290
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 43 DKTVIIWSA--SSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDARTPFDC 99
D +++IW ++ L GH +GI L W D H + S+ D T+ +W+ + +
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQ 297
Query: 100 LKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRI 133
L ++ F F P++ +L SFD I +
Sbjct: 298 LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC------ITSTFSV-TNGKYIVSGSE 257
+ ILV + ++LW + L + K+C I ST SV ++G VSGS+
Sbjct: 94 RGILVASDSGAVELWELDENETLIV------SKFCKYEHDDIVSTVSVLSSGTQAVSGSK 147
Query: 258 DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI 294
D C+ VWDL Q+ ++ H V V P ++ +
Sbjct: 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 112/296 (37%), Gaps = 36/296 (12%)
Query: 23 RAVSCVKFSNDGTLLASASLDKTVI----IW------SASSLALVHRFVGHSEGISDLAW 72
R + ++ +DG LL AS +W +A + V G++DL W
Sbjct: 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90
Query: 73 SSDSHYICSASDDRTLRIWDARTPFDCLKTL-------RGHSDFVFCVNFNPQSNLIVSG 125
+ I ASD + +W+ D +TL H D V V+ VSG
Sbjct: 91 VGE-RGILVASDSGAVELWE----LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG 145
Query: 126 SFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACL 184
S D I++W++ RAH+ VT V + S+ +S S D +WD C
Sbjct: 146 SKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT---RCP 202
Query: 185 K--TLIDDKDPA---VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC 239
K + I P S A + + G + T+ L + + + H+ C
Sbjct: 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ---C 259
Query: 240 ITS-TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI 294
+T FS + ++ S SED + V D + + H D V T P + +
Sbjct: 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSL 314
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 6/163 (3%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS--DSHY 78
H VS V + GT S S D + +W + ++ + H+ ++ +A S DS +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 79 ICSASDDRTLRIWDARTPFDCLKTLRGHSDFV-FCVNFNP-QSNLIVSGSFDESIRIWEV 136
+ + D+R L +WD R P + ++ + ++P QS + V G + ++ + +
Sbjct: 186 LSCSEDNRIL-LWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244
Query: 137 KTGKCTRVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDA 178
K+ C HS VT + F+ + S S D + + D+
Sbjct: 245 KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDS 287
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV-TNGKYIVSGSEDNCVYV 263
K ILV + ++LW + L + + I T SV ++G VSG +D V V
Sbjct: 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165
Query: 264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKI-ASAGLDG 301
WDL QK +++ + H+ V V P ++ I S G DG
Sbjct: 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG 204
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 6/163 (3%)
Query: 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW--SSDSHY 78
H V + +DGT S D +V +W S A++ + HS ++ +A D+ +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 79 ICSASDDRTLRIWDARTPFDCLKTLRGHSDFV-FCVNFNPQS-NLIVSGSFDESIRIWEV 136
+ D R L +WD R P + SD + V ++P+ + G ++ + +
Sbjct: 198 LSCGEDGRIL-LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256
Query: 137 KTGKCTRVIRAHSMPVTSVHFNRDGS-LIVSGSHDGTCKIWDA 178
K + HS +T + ++ S + S S D T + DA
Sbjct: 257 KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 122 IVSGSFDESIRIWEVKTGKCTRVIR----AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
I+ S ++ +WE+ + V + H V ++ DG+ VSG D + K+WD
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 178 AGEGACLKT 186
+ A LK+
Sbjct: 168 LSQKAVLKS 176
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 38/284 (13%)
Query: 25 VSCVKFSNDGTLLASASLDKTVIIW--SASSLALVHRFVGHSEGISDLAWSSDSHYICSA 82
+SC ++ D T +A + V I+ S + VH H+ ++ + W+ DS+ I +
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 83 SDDRTLRIW--DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK 140
DR +W RT L LR + CV + P GS I I +
Sbjct: 71 GTDRNAYVWTLKGRTWKPTLVILRINRA-ARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129
Query: 141 ----CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVS 196
C + + V S+ ++ + L+ +GS D C+I+ A +K + + P
Sbjct: 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEERPAP--- 182
Query: 197 FAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS 256
+P G + G L ++ ++ + FS NG + S
Sbjct: 183 ----TPWGSKMPFGEL----------------MFESSSSCGWVHGVCFS-ANGSRVAWVS 221
Query: 257 EDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD 300
D+ V + D +K + L T +++VT TE+ + +AG D
Sbjct: 222 HDSTVCLADADKKMAVATLASETLPLLAVT-FITESSLVAAGHD 264
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 38/284 (13%)
Query: 25 VSCVKFSNDGTLLASASLDKTVIIW--SASSLALVHRFVGHSEGISDLAWSSDSHYICSA 82
+SC ++ D T +A + V I+ S + VH H+ ++ + W+ DS+ I +
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 83 SDDRTLRIW--DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK 140
DR +W RT L LR + CV + P GS I I +
Sbjct: 71 GTDRNAYVWTLKGRTWKPTLVILRINRA-ARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129
Query: 141 ----CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVS 196
C + + V S+ ++ + L+ +GS D C+I+ A +K + + P
Sbjct: 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEERPAP--- 182
Query: 197 FAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS 256
+P G + G L ++ ++ + FS NG + S
Sbjct: 183 ----TPWGSKMPFGEL----------------MFESSSSCGWVHGVCFS-ANGSRVAWVS 221
Query: 257 EDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD 300
D+ V + D +K + L T +++VT TE+ + +AG D
Sbjct: 222 HDSTVCLADADKKMAVATLASETLPLLAVT-FITESSLVAAGHD 264
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTC-KIWDAGEGACLKTLIDDKD-PAVSFAKFS 201
+++AH+ PV V NR G ++ + S DGT +++ G ++ D ++ ++S
Sbjct: 174 LVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWS 233
Query: 202 PNGKFILVGTLDSTLKLWNY--SAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN 259
P+G + V + TL ++ A + N KY S +S+ N K VS ++
Sbjct: 234 PDGSKLAVVSDKWTLHVFEVFNDAENKRHVLKDWINIKY-FQSEWSICNFKLKVSKGSND 292
Query: 260 CVYVW 264
C W
Sbjct: 293 CKIAW 297
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 36/266 (13%)
Query: 79 ICSASDDRTLRIWDARTPFDCL-KTLRGHSDFVFCVNF-NPQ-SNLIVSGSFDESIRIWE 135
+ + S DR+++I+D R L LRGH V+ V + +P N++ S S+D + IW
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 136 VKTGKCTRVIR--AHSMPVTSVHF--NRDGSLIVSGSHDGTCKIWD-AGEGACLKTLIDD 190
+ G + H V SV + + G ++ GS DG + GEG I++
Sbjct: 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN 147
Query: 191 KDP----AVSFAKFSPNGKFI--------------LVGTLDSTLKLWNYSA-GKFLKIYT 231
AVS+A G I G D+ +KLW G++ +
Sbjct: 148 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK 207
Query: 232 GHTNKKYCITSTFSVTNG---KYIVSGSEDNCVYVW---DLQQKTMIQK-LDGHTDSVIS 284
+ + ++ + G I S S+D V++W D T K L D V
Sbjct: 208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH 267
Query: 285 VTCHPTENKIASAGLDGDRTVRVWVQ 310
V+ T N +A +G GD V +W +
Sbjct: 268 VSWSITANILAVSG--GDNKVTLWKE 291
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 97/248 (39%), Gaps = 36/248 (14%)
Query: 18 LTAHSRAVSCVKFSND--GTLLASASLDKTVIIWSAS--SLALVHRFVGHSEGISDLAWS 73
L H V V +++ G +LAS S D+ VIIW + H GH ++ + W+
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 112
Query: 74 SDSHYI---CSASDDR-TLRIWDARTPFDCLKTLRGHSDFVFCVNFNP------------ 117
+ + C +SD +L + ++ K H+ V++ P
Sbjct: 113 PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPS 172
Query: 118 --QSNLI---VSGSFDESIRIW-EVKTG--KCTRVIRAHSMPVTSVHF----NRDGSLIV 165
+ N I SG D I++W E + G K + + AHS V V + S I
Sbjct: 173 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232
Query: 166 SGSHDGTCKIW---DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS 222
S S DG IW DA L+ + V +S + V D+ + LW S
Sbjct: 233 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292
Query: 223 A-GKFLKI 229
G+++ I
Sbjct: 293 VDGQWVCI 300
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 42/229 (18%)
Query: 96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG----KCTRVIRAHSMP 151
PFD GH D V V ++ + + S D+ I+++++ + + RAH
Sbjct: 5 PFDS-----GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS 59
Query: 152 VTSVHFNRD--GSLIVSGSHDGTCKIW--DAGEGAC-------LKTLIDDKDPAVSFAKF 200
+ ++ + G +I S S+D T K+W D + C L TL D K S KF
Sbjct: 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS-VKF 118
Query: 201 SP------------NGKFILVGTLD-STLKLWNY-SAGKFLKI-YTGHTNKKYCIT---S 242
+P +G L L+ S L+ W S K L I H +C++ S
Sbjct: 119 APAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPS 178
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMI-QKLDGHTDSVISVTCHPT 290
FS K VS E +Y K + KL GH + S++ P+
Sbjct: 179 RFSPE--KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Query: 116 NPQSNLIVSGSFDESIRIWEVKTGKCTRVI-RAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174
NP+ IV+ D I ++ + R I A S + +V F R ++ S G K
Sbjct: 160 NPE---IVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNS-IGQLK 215
Query: 175 IWD----AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF-LKI 229
IWD E + + +L D+ P + + G D L +W+ G + +
Sbjct: 216 IWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSL 275
Query: 230 YTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD 265
H + + + F +N +++ + SED ++ WD
Sbjct: 276 LKAHEAEMWEVH--FHPSNPEHLFTCSEDGSLWHWD 309
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 74 SDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIR 132
+ H + + D L IWD R + L+ H ++ V+F+P + + + S D S+
Sbjct: 247 NQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLW 306
Query: 133 IWEVKT 138
W+ T
Sbjct: 307 HWDAST 312
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 4 AQTPPYKPYRHFKT---LTAHSRAVSCVKFSNDGTLLASA---------SLDKT------ 45
++ +P +F++ + +S ++ VKFS G+LLA A +L +T
Sbjct: 212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 271
Query: 46 --VIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL 103
+ + + SS A + F HS + L+++ +CSA D LR WD +T + + TL
Sbjct: 272 GSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTL 329
Query: 104 RGHSD 108
H D
Sbjct: 330 NMHCD 334
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 97 FDCLKTLRGHSDFVFCVNFNPQSNLIV----SGSFDESIRIWEVKTGKCTRVIR------ 146
F+ ++ +S+ + V F+PQ +L+ S SF I ++E + G+ +
Sbjct: 223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-CITLYETEFGERIGSLSVPTHSS 281
Query: 147 -------AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187
AHS V S+ FN G + S DG + WD + TL
Sbjct: 282 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 105 GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH 148
HS +V ++FN + S +D +R W+VKT + + H
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 8 PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASA---------SLDKT--------VIIWS 50
P + ++ +S ++ VKFS G+LLA A +L +T + + +
Sbjct: 229 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 288
Query: 51 ASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSD 108
SS A + F HS + L+++ +CSA D LR WD +T + + TL H D
Sbjct: 289 HSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCD 344
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 97 FDCLKTLRGHSDFVFCVNFNPQSNLIV----SGSFDESIRIWEVKTGKCTRVIR------ 146
F+ ++ +S+ + V F+PQ +L+ S SF I ++E + G+ +
Sbjct: 233 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-CITLYETEFGERIGSLSVPTHSS 291
Query: 147 -------AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187
AHS V S+ FN G + S DG + WD + TL
Sbjct: 292 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 105 GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH 148
HS +V ++FN + S +D +R W+VKT + + H
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGT-CKIWDAGEGACLKTLIDDKDPA-VSFAKFS 201
+I+AH+ P+ V NR ++ + S DGT +++ +G ++ D A V K+S
Sbjct: 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS 249
Query: 202 PNGKFILVGTLDSTLKLWNYSAGKFLKIYT--GHTNKKYCITSTFSVTNGKYIVSGSEDN 259
+G + V + TL ++ + K + G N KY S +S+ N K V
Sbjct: 250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY-FQSEWSLCNFKLSVDKHVRG 308
Query: 260 CVYVW 264
C W
Sbjct: 309 CKIAW 313
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVI-IWSASSLALVHRFVGHSE--GISDLAWSS 74
+ AH+ + V+ + ++A+ S D T+I ++ LV F + + D+ WS+
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250
Query: 75 DSHYICSASDDRTLRIWD 92
D + SD TL +++
Sbjct: 251 DGSKLAVVSDKWTLHVFE 268
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 196 SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT--GHT---NKKYCITSTFSVTNGK 250
+F S +++ G L +WN A + + +Y+ GH N I
Sbjct: 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAP 130
Query: 251 YIVSGSEDNCVYVWDLQQK 269
IV+GS D V VWD +QK
Sbjct: 131 EIVTGSRDGTVKVWDPRQK 149
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 25/76 (32%)
Query: 118 QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD----------------G 161
Q + +G F ++ IW + A MPV SV +++
Sbjct: 79 QQRYLATGDFGGNLHIWN---------LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA 129
Query: 162 SLIVSGSHDGTCKIWD 177
IV+GS DGT K+WD
Sbjct: 130 PEIVTGSRDGTVKVWD 145
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 21/125 (16%)
Query: 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL------IVS 124
A S Y+ + L IW+ P + +++GH + + ++ + IV+
Sbjct: 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134
Query: 125 GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVH------------FNRDGSLIVSGSHDGT 172
GS D ++++W+ + K V A+ PV + +N++ ++ +G +G
Sbjct: 135 GSRDGTVKVWDPRQ-KDDPV--ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 173 CKIWD 177
K++D
Sbjct: 192 IKLFD 196
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 68/179 (37%), Gaps = 36/179 (20%)
Query: 78 YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVN---------FNPQSNLIVSGSFD 128
++ +AS D+T++IWD L+ +RG + F++ + F+P +++
Sbjct: 265 FLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 317
Query: 129 ESIRIWEVKTGKCTRVIRAHS-------MPVTSVHFNRDGSLIVSGSHDGTCK------- 174
IR++ C + H P+ + R ++V D K
Sbjct: 318 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377
Query: 175 ----IWDAGEGACLKTLIDDKDPAV-SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228
++D G + L D + + S +F+P G L + + +W+ + K
Sbjct: 378 RTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD-TLASAMGYHILIWSQQEARTRK 435
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 36 LLASASLDKTVIIWSASSLALVHRF---VGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92
LA+AS+D+TV IW + F + H ++ +S D + + +R++
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
Query: 93 ARTPFDCLKTLRGHSDFVFC------VNFNPQSNLIVSGSFDE 129
A + +DC L H F ++P+ NLIV G + +
Sbjct: 325 A-SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 36 LLASASLDKTVIIWSASSLALVHRF---VGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92
LA+AS+D+TV IW + F + H ++ +S D + + +R++
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 325
Query: 93 ARTPFDCLKTLRGHSDFVFC------VNFNPQSNLIVSGSFDE 129
A + +DC L H F ++P+ NLIV G + +
Sbjct: 326 A-SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 367
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 68/179 (37%), Gaps = 36/179 (20%)
Query: 78 YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVN---------FNPQSNLIVSGSFD 128
++ +AS D+T++IWD L+ +RG + F++ + F+P +++
Sbjct: 266 FLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 318
Query: 129 ESIRIWEVKTGKCTRVIRAHS-------MPVTSVHFNRDGSLIVSGSHDGTCK------- 174
IR++ C + H P+ + R ++V D K
Sbjct: 319 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 378
Query: 175 ----IWDAGEGACLKTLIDDKDPAV-SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228
++D G + L D + + S +F+P G L + + +W+ + K
Sbjct: 379 RTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD-TLASAMGYHILIWSQEEARTRK 436
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 35/155 (22%)
Query: 78 YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVN---------FNPQSNLIVSGSFD 128
++ +AS D+T++IWD L+ +RG + F++ + F+P +++
Sbjct: 265 FLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 317
Query: 129 ESIRIWEVKTGKCTRVIRAHS-------MPVTSVHFNRDGSLIVSGSHDGTCK------- 174
IR++ C + H P+ + R ++V D K
Sbjct: 318 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377
Query: 175 ----IWDAGEGACLKTLIDDKDPAV-SFAKFSPNG 204
++D G + L D + + S +F+P G
Sbjct: 378 RTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG 412
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 36 LLASASLDKTVIIWSASSLALVHRF---VGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92
LA+AS+D+TV IW + F + H ++ +S D + + +R++
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
Query: 93 ARTPFDCLKTLRGHSDFVFC------VNFNPQSNLIVSGSFDE 129
A + +DC L H F ++P+ NLIV G + +
Sbjct: 325 A-SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS 222
GT IWD G C L D SF K+S +L G D + +++YS
Sbjct: 305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS 222
GT IWD G C L D SF K+S +L G D + +++YS
Sbjct: 305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRI----WEVKTGKCTRVI 145
+W +R PF+ + +V V F+P N + D S+ I + + +
Sbjct: 188 VWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247
Query: 146 RAHSMPVTSVHFNRDGSLIVSG 167
+ +P+ S+ + + +++ +G
Sbjct: 248 KLSQLPLRSLLWANESAIVAAG 269
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 101 KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK---TGKCTRVIRAHSMPVTSVHF 157
+T H V CV++ P+SN IV+ S D + ++E + T K T V+ + T V +
Sbjct: 49 RTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRW 108
Query: 158 --NRDGSLIVSGS 168
N D + SG+
Sbjct: 109 SPNEDKFAVGSGA 121
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 213 DSTLKLWNYSAGKFL-KIYTGHTNKKYCITSTFSVTNGKYI--VSGSEDNCVYVW----D 265
+S LKLWNY K K Y K I T ++TN K+I +D + VW D
Sbjct: 372 ESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVD 431
Query: 266 LQQKTMIQK 274
Q K +++K
Sbjct: 432 PQIKGLLEK 440
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 213 DSTLKLWNYSAGKFL-KIYTGHTNKKYCITSTFSVTNGKYI--VSGSEDNCVYVW----D 265
+S LKLWNY K K Y K I T ++TN K+I +D + VW D
Sbjct: 375 ESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVD 434
Query: 266 LQQKTMIQK 274
Q K +++K
Sbjct: 435 PQIKGLLEK 443
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 213 DSTLKLWNYSAGKFL-KIYTGHTNKKYCITSTFSVTNGKYI--VSGSEDNCVYVW----D 265
+S LKLWNY K K Y K I T ++TN K+I +D + VW D
Sbjct: 372 ESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVD 431
Query: 266 LQQKTMIQK 274
Q K +++K
Sbjct: 432 PQIKGLLEK 440
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 61 VGHSEGISD--LAWSSDSH-YICSASDDRTLRIWDARTPFDCLKTLRGHSDFV--FCVNF 115
+GH ++D L SD H +I ++ D ++I F K L GH FV C
Sbjct: 192 LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG- 250
Query: 116 NPQSNLIVSGSFDESIRIWEVKTGK 140
+ L++S D+ I W+ KTGK
Sbjct: 251 --KDYLLLSAGGDDKIFAWDWKTGK 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,984,464
Number of Sequences: 62578
Number of extensions: 410440
Number of successful extensions: 2987
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 451
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)